Warning: Permanently added '107.21.168.44' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9453217-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.3 PID: 8877 Logging PID: 8878 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9453217, 'buildroot_pkgs': ['fedora-clang-default-cc'], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '40061aa6f1f6841dec7a9b175db90925aee41f68', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.1.1-39', 'project_dirname': 'clang-monthly-fedora-rebuild', 'project_name': 'clang-monthly-fedora-rebuild', 'project_owner': '@fedora-llvm-team', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/clang-monthly-fedora-rebuild/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/tstellar/fedora-clang-default-cc/fedora-rawhide-aarch64/', 'id': 'copr_tstellar_fedora_clang_default_cc', 'name': 'Additional repo copr_tstellar_fedora_clang_default_cc'}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/llvm-snapshots-big-merge-20250813/fedora-rawhide-aarch64/', 'id': 'copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813', 'module_hotfixes': True, 'name': 'Additional repo copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813'}], 'sandbox': '@fedora-llvm-team/clang-monthly-fedora-rebuild--tstellar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'tstellar', 'tags': [], 'task_id': '9453217-fedora-rawhide-aarch64', 'timeout': 90000, 'uses_devel_repo': False, 'with_opts': ['toolchain_clang', 'clang_lto'], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/openbabel /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel'... Running: git checkout 40061aa6f1f6841dec7a9b175db90925aee41f68 -- cmd: ['git', 'checkout', '40061aa6f1f6841dec7a9b175db90925aee41f68', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel rc: 0 stdout: stderr: Note: switching to '40061aa6f1f6841dec7a9b175db90925aee41f68'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 40061aa automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-1-1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o openbabel-openbabel-3-1-1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-llvm-team/clang-monthly-fedora-rebuild/openbabel/openbabel-openbabel-3-1-1.tar.gz/md5/7efb864d2ba5593b286ddc49d70aa851/openbabel-openbabel-3-1-1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 34.9M 100 34.9M 0 0 400M 0 --:--:-- --:--:-- --:--:-- 402M INFO: Reading stdout from command: md5sum openbabel-openbabel-3-1-1.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=90000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1755767217.818727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto INFO: mock.py version 6.3 starting (python version = 3.13.5, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1755767217.818727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel/openbabel.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1755767217.818727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-b68827be-c548-4b85-9b9d-9e0143988c29 INFO: Checking that 03e260f347e505c0b5558f0160a91570d02e64f432908ec70672d288c8839de8 image matches host's architecture INFO: Copy content of container 03e260f347e505c0b5558f0160a91570d02e64f432908ec70672d288c8839de8 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1755767217.818727/root INFO: mounting 03e260f347e505c0b5558f0160a91570d02e64f432908ec70672d288c8839de8 with podman image mount INFO: image 03e260f347e505c0b5558f0160a91570d02e64f432908ec70672d288c8839de8 as /var/lib/containers/storage/overlay/cb80e687859449f935fa1993f1c1661366c68c9c3c8cca8a483b598bbcaf2873/merged INFO: umounting image 03e260f347e505c0b5558f0160a91570d02e64f432908ec70672d288c8839de8 (/var/lib/containers/storage/overlay/cb80e687859449f935fa1993f1c1661366c68c9c3c8cca8a483b598bbcaf2873/merged) with podman image umount INFO: Removing image mock-bootstrap-b68827be-c548-4b85-9b9d-9e0143988c29 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.91-4.fc44.aarch64 rpm-sequoia-1.9.0-2.fc43.aarch64 dnf5-5.2.16.0-3.fc44.aarch64 dnf5-plugins-5.2.16.0-3.fc44.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo copr_tstellar_fedora_c 100% | 23.4 KiB/s | 2.5 KiB | 00m00s Additional repo copr_fedora_llvm_team_ 100% | 226.4 KiB/s | 24.4 KiB | 00m00s Copr repository 100% | 22.8 MiB/s | 2.8 MiB | 00m00s fedora 100% | 21.6 MiB/s | 20.9 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.3.0-2.fc44 copr_base 8.5 MiB bzip2 aarch64 1.0.8-21.fc44 copr_base 170.9 KiB coreutils aarch64 9.7-5.fc43 fedora 8.1 MiB cpio aarch64 2.15-6.fc43 fedora 1.1 MiB diffutils aarch64 3.12-3.fc44 copr_base 1.6 MiB fedora-release-common noarch 44-0.2 fedora 20.4 KiB findutils aarch64 1:4.10.0-6.fc44 copr_base 1.9 MiB gawk aarch64 5.3.2-2.fc44 copr_base 2.5 MiB glibc-minimal-langpack aarch64 2.42.9000-1.fc44 fedora 0.0 B grep aarch64 3.12-2.fc43 fedora 1.0 MiB gzip aarch64 1.14-1.fc44 fedora 437.6 KiB info aarch64 7.2-6.fc44 copr_base 421.3 KiB patch aarch64 2.8-2.fc44 copr_base 263.1 KiB redhat-rpm-config noarch 343-11.fc44 fedora 182.9 KiB rpm-build aarch64 5.99.91-4.fc44 fedora 596.9 KiB sed aarch64 4.9-5.fc44 copr_base 873.6 KiB shadow-utils aarch64 2:4.18.0-3.fc44 copr_base 4.6 MiB tar aarch64 2:1.35-6.fc43 fedora 3.0 MiB unzip aarch64 6.0-68.fc44 fedora 470.2 KiB util-linux aarch64 2.41.1-16.fc44 fedora 6.8 MiB which aarch64 2.23-3.fc43 fedora 123.4 KiB xz aarch64 1:5.8.1-2.fc44 copr_base 1.4 MiB Installing dependencies: add-determinism aarch64 0.6.0-2.fc43 fedora 2.1 MiB alternatives aarch64 1.33-2.fc44 copr_base 90.0 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs aarch64 4.1.1-2.fc44 fedora 486.9 KiB binutils aarch64 2.45-3.fc44 fedora 30.1 MiB build-reproducibility-srpm-macros noarch 0.6.0-2.fc43 fedora 735.0 B bzip2-libs aarch64 1.0.8-21.fc44 copr_base 72.4 KiB ca-certificates noarch 2024.2.69_v8.0.401-8.fc44 fedora 2.6 MiB coreutils-common aarch64 9.7-5.fc43 fedora 11.3 MiB crypto-policies noarch 20250714-4.gitcd6043a.fc44 fedora 146.9 KiB curl aarch64 8.15.0-2.fc44 copr_base 469.8 KiB cyrus-sasl-lib aarch64 2.1.28-33.fc44 fedora 2.4 MiB debugedit aarch64 5.2-2.fc44 copr_base 249.4 KiB dwz aarch64 0.16-2.fc43 fedora 322.6 KiB ed aarch64 1.22.2-1.fc44 copr_base 156.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils aarch64 0.193-3.fc43 fedora 3.2 MiB elfutils-debuginfod-client aarch64 0.193-3.fc43 fedora 143.9 KiB elfutils-default-yama-scope noarch 0.193-3.fc43 fedora 1.8 KiB elfutils-libelf aarch64 0.193-3.fc43 fedora 1.2 MiB elfutils-libs aarch64 0.193-3.fc43 fedora 746.7 KiB fedora-gpg-keys noarch 44-0.1 fedora 131.2 KiB fedora-release noarch 44-0.2 fedora 0.0 B fedora-release-identity-basic noarch 44-0.2 fedora 664.0 B fedora-repos noarch 44-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 44-0.1 fedora 2.2 KiB file aarch64 5.46-7.fc44 fedora 140.2 KiB file-libs aarch64 5.46-7.fc44 fedora 11.9 MiB filesystem aarch64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 1-1.fc44 fedora 2.0 KiB gdb-minimal aarch64 16.3-5.fc44 fedora 13.0 MiB gdbm-libs aarch64 1:1.23-10.fc44 copr_base 234.0 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc aarch64 2.42.9000-1.fc44 fedora 6.3 MiB glibc-common aarch64 2.42.9000-1.fc44 fedora 1.3 MiB glibc-gconv-extra aarch64 2.42.9000-1.fc44 fedora 18.6 MiB gmp aarch64 1:6.3.0-4.fc43 fedora 657.9 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnupg2 aarch64 2.4.8-4.fc44 copr_base 6.7 MiB gnupg2-dirmngr aarch64 2.4.8-4.fc44 copr_base 712.5 KiB gnupg2-gpg-agent aarch64 2.4.8-4.fc44 copr_base 850.5 KiB gnupg2-gpgconf aarch64 2.4.8-4.fc44 copr_base 323.2 KiB gnupg2-keyboxd aarch64 2.4.8-4.fc44 copr_base 234.4 KiB gnupg2-verify aarch64 2.4.8-4.fc44 copr_base 431.4 KiB gnutls aarch64 3.8.10-3.fc43 fedora 3.6 MiB go-srpm-macros noarch 3.7.0-4.fc43 fedora 61.6 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs aarch64 1.6.2-6.fc44 copr_base 92.6 KiB jansson aarch64 2.14-3.fc44 copr_base 157.3 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c aarch64 0.18-7.fc44 copr_base 138.6 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-6.fc44 copr_base 98.2 KiB krb5-libs aarch64 1.21.3-7.fc43 fedora 2.5 MiB libacl aarch64 2.3.2-4.fc43 fedora 68.0 KiB libarchive aarch64 3.8.1-3.fc44 copr_base 975.3 KiB libassuan aarch64 2.5.7-4.fc44 copr_base 216.2 KiB libattr aarch64 2.5.2-6.fc43 fedora 68.5 KiB libblkid aarch64 2.41.1-16.fc44 fedora 290.5 KiB libbrotli aarch64 1.1.0-9.fc44 copr_base 909.2 KiB libcap aarch64 2.76-3.fc44 fedora 508.8 KiB libcap-ng aarch64 0.8.5-7.fc44 copr_base 160.7 KiB libcom_err aarch64 1.47.3-2.fc44 copr_base 111.0 KiB libcurl aarch64 8.15.0-2.fc44 copr_base 1.1 MiB libeconf aarch64 0.7.9-2.fc43 fedora 81.0 KiB libevent aarch64 2.1.12-16.fc43 fedora 1.1 MiB libfdisk aarch64 2.41.1-16.fc44 fedora 418.9 KiB libffi aarch64 3.5.1-2.fc43 fedora 155.7 KiB libfsverity aarch64 1.6-3.fc43 fedora 68.5 KiB libgcc aarch64 15.2.1-1.fc43 fedora 222.2 KiB libgcrypt aarch64 1.11.1-2.fc43 fedora 1.2 MiB libgomp aarch64 15.2.1-1.fc43 fedora 516.6 KiB libgpg-error aarch64 1.55-2.fc44 copr_base 971.7 KiB libidn2 aarch64 2.3.8-2.fc44 copr_base 560.5 KiB libksba aarch64 1.6.7-4.fc44 copr_base 463.8 KiB liblastlog2 aarch64 2.41.1-16.fc44 fedora 137.9 KiB libmount aarch64 2.41.1-16.fc44 fedora 420.2 KiB libnghttp2 aarch64 1.66.0-2.fc44 copr_base 199.1 KiB libpkgconf aarch64 2.3.0-3.fc44 copr_base 133.9 KiB libpsl aarch64 0.21.5-6.fc44 copr_base 132.3 KiB libselinux aarch64 3.9-4.fc44 fedora 201.1 KiB libsemanage aarch64 3.9-3.fc44 fedora 360.2 KiB libsepol aarch64 3.9-2.fc44 copr_base 940.5 KiB libsmartcols aarch64 2.41.1-16.fc44 fedora 224.6 KiB libssh aarch64 0.11.2-2.fc43 fedora 586.6 KiB libssh-config noarch 0.11.2-2.fc43 fedora 277.0 B libstdc++ aarch64 15.2.1-1.fc43 fedora 2.8 MiB libtasn1 aarch64 4.20.0-2.fc43 fedora 220.4 KiB libtool-ltdl aarch64 2.5.4-7.fc43 fedora 94.0 KiB libunistring aarch64 1.1-10.fc44 copr_base 1.7 MiB libusb1 aarch64 1.0.29-3.fc43 fedora 178.9 KiB libuuid aarch64 2.41.1-16.fc44 fedora 69.4 KiB libverto aarch64 0.3.2-11.fc43 fedora 69.4 KiB libxcrypt aarch64 4.4.38-8.fc43 fedora 272.5 KiB libxml2 aarch64 2.12.10-4.fc44 fedora 1.9 MiB libzstd aarch64 1.5.7-2.fc43 fedora 667.7 KiB lua-libs aarch64 5.4.8-2.fc43 fedora 328.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs aarch64 1.10.0-3.fc43 fedora 197.4 KiB mpfr aarch64 4.2.2-2.fc43 fedora 755.5 KiB ncurses-base noarch 6.5-7.20250614.fc44 copr_base 328.1 KiB ncurses-libs aarch64 6.5-7.20250614.fc44 copr_base 1.3 MiB nettle aarch64 3.10.1-2.fc43 fedora 765.3 KiB npth aarch64 1.8-3.fc44 copr_base 93.5 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap aarch64 2.6.10-3.fc43 fedora 697.9 KiB openssl-libs aarch64 1:3.5.1-2.fc43 fedora 7.4 MiB p11-kit aarch64 0.25.5-9.fc43 fedora 2.4 MiB p11-kit-trust aarch64 0.25.5-9.fc43 fedora 463.3 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs aarch64 1.7.1-3.fc44 copr_base 222.9 KiB pcre2 aarch64 10.45-1.fc44.1 copr_base 841.0 KiB pcre2-syntax noarch 10.45-1.fc44.1 copr_base 273.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf aarch64 2.3.0-3.fc44 copr_base 110.5 KiB pkgconf-m4 noarch 2.3.0-3.fc44 copr_base 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-3.fc44 copr_base 990.0 B popt aarch64 1.19-9.fc44 copr_base 144.6 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.3-2.fc43 fedora 1.9 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.1-2.fc43 fedora 464.0 B readline aarch64 8.3-2.fc44 copr_base 563.8 KiB rpm aarch64 5.99.91-4.fc44 fedora 3.3 MiB rpm-build-libs aarch64 5.99.91-4.fc44 fedora 264.1 KiB rpm-libs aarch64 5.99.91-4.fc44 fedora 995.4 KiB rpm-sequoia aarch64 1.9.0-2.fc43 fedora 2.3 MiB rpm-sign-libs aarch64 5.99.91-4.fc44 fedora 67.8 KiB rust-srpm-macros noarch 26.4-1.fc44 fedora 4.8 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs aarch64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs aarch64 257.7-1.fc43 fedora 2.3 MiB systemd-standalone-sysusers aarch64 257.7-1.fc43 fedora 329.4 KiB tpm2-tss aarch64 4.1.3-8.fc44 copr_base 2.2 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core aarch64 2.41.1-16.fc44 fedora 2.4 MiB xxhash-libs aarch64 0.8.3-3.fc44 copr_base 85.7 KiB xz-libs aarch64 1:5.8.1-2.fc44 copr_base 265.9 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip aarch64 3.0-44.fc43 fedora 762.5 KiB zlib-ng-compat aarch64 2.2.5-1.fc44 copr_base 133.2 KiB zstd aarch64 1.5.7-2.fc43 fedora 1.5 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 57 MiB. Need to download 57 MiB. After this operation, 225 MiB extra will be used (install 225 MiB, remove 0 B). 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32.0 KiB | 00m00s [168/170] publicsuffix-list-dafsa-0:202 100% | 19.3 MiB/s | 59.2 KiB | 00m00s [169/170] libcom_err-0:1.47.3-2.fc44.aa 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [170/170] gdb-minimal-0:16.3-5.fc44.aar 100% | 54.8 MiB/s | 4.2 MiB | 00m00s -------------------------------------------------------------------------------- [170/170] Total 100% | 100.3 MiB/s | 57.2 MiB | 00m01s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/172] Verify package files 100% | 769.0 B/s | 170.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.aarch64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.aarch64 >>> [RPM] /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root/var/cache/ [ 2/172] Prepare transaction 100% | 2.7 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-1. 100% | 109.3 MiB/s | 223.9 KiB | 00m00s [ 4/172] Installing publicsuffix-list- 100% | 68.2 MiB/s | 69.8 KiB | 00m00s [ 5/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/172] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 7/172] Installing fedora-gpg-keys-0: 100% | 29.1 MiB/s | 179.0 KiB | 00m00s [ 8/172] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/172] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/172] Installing fedora-release-com 100% | 24.2 MiB/s | 24.8 KiB | 00m00s [ 11/172] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/172] Installing setup-0:2.15.0-26. 100% | 37.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/172] Installing filesystem-0:3.18- 100% | 1.9 MiB/s | 212.8 KiB | 00m00s [ 14/172] Installing pcre2-syntax-0:10. 100% | 135.0 MiB/s | 276.4 KiB | 00m00s [ 15/172] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 16/172] Installing ncurses-base-0:6.5 100% | 49.3 MiB/s | 353.5 KiB | 00m00s [ 17/172] Installing glibc-common-0:2.4 100% | 57.6 MiB/s | 1.3 MiB | 00m00s [ 18/172] Installing glibc-gconv-extra- 100% | 365.9 MiB/s | 18.7 MiB | 00m00s [ 19/172] Installing glibc-0:2.42.9000- 100% | 146.1 MiB/s | 6.3 MiB | 00m00s [ 20/172] Installing ncurses-libs-0:6.5 100% | 261.7 MiB/s | 1.3 MiB | 00m00s [ 21/172] Installing bash-0:5.3.0-2.fc4 100% | 202.1 MiB/s | 8.5 MiB | 00m00s [ 22/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/172] Installing zlib-ng-compat-0:2 100% | 130.9 MiB/s | 134.0 KiB | 00m00s [ 24/172] Installing bzip2-libs-0:1.0.8 100% | 71.8 MiB/s | 73.5 KiB | 00m00s [ 25/172] Installing libgpg-error-0:1.5 100% | 45.5 MiB/s | 977.6 KiB | 00m00s [ 26/172] Installing libstdc++-0:15.2.1 100% | 315.1 MiB/s | 2.8 MiB | 00m00s [ 27/172] Installing xz-libs-1:5.8.1-2. 100% | 130.4 MiB/s | 267.0 KiB | 00m00s [ 28/172] Installing libgcrypt-0:1.11.1 100% | 238.9 MiB/s | 1.2 MiB | 00m00s [ 29/172] Installing libassuan-0:2.5.7- 100% | 212.9 MiB/s | 218.0 KiB | 00m00s [ 30/172] Installing readline-0:8.3-2.f 100% | 276.3 MiB/s | 565.9 KiB | 00m00s [ 31/172] Installing gmp-1:6.3.0-4.fc43 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 32/172] Installing libuuid-0:2.41.1-1 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 33/172] Installing popt-0:1.19-9.fc44 100% | 49.2 MiB/s | 151.3 KiB | 00m00s [ 34/172] Installing npth-0:1.8-3.fc44. 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [ 35/172] Installing libblkid-0:2.41.1- 100% | 142.4 MiB/s | 291.6 KiB | 00m00s [ 36/172] Installing libattr-0:2.5.2-6. 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 37/172] Installing libacl-0:2.3.2-4.f 100% | 67.2 MiB/s | 68.8 KiB | 00m00s [ 38/172] Installing libxcrypt-0:4.4.38 100% | 134.4 MiB/s | 275.2 KiB | 00m00s [ 39/172] Installing libzstd-0:1.5.7-2. 100% | 217.8 MiB/s | 669.0 KiB | 00m00s [ 40/172] Installing elfutils-libelf-0: 100% | 297.5 MiB/s | 1.2 MiB | 00m00s [ 41/172] Installing sqlite-libs-0:3.50 100% | 250.2 MiB/s | 1.5 MiB | 00m00s [ 42/172] Installing gnupg2-gpgconf-0:2 100% | 12.7 MiB/s | 325.3 KiB | 00m00s [ 43/172] Installing crypto-policies-0: 100% | 21.0 MiB/s | 172.0 KiB | 00m00s [ 44/172] Installing libtasn1-0:4.20.0- 100% | 108.5 MiB/s | 222.2 KiB | 00m00s [ 45/172] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 46/172] Installing libidn2-0:2.3.8-2. 100% | 138.3 MiB/s | 566.6 KiB | 00m00s [ 47/172] Installing dwz-0:0.16-2.fc43. 100% | 17.6 MiB/s | 324.0 KiB | 00m00s [ 48/172] Installing gnupg2-verify-0:2. 100% | 23.5 MiB/s | 432.6 KiB | 00m00s [ 49/172] Installing mpfr-0:4.2.2-2.fc4 100% | 184.9 MiB/s | 757.2 KiB | 00m00s [ 50/172] Installing gawk-0:5.3.2-2.fc4 100% | 100.8 MiB/s | 2.5 MiB | 00m00s [ 51/172] Installing libksba-0:1.6.7-4. 100% | 227.7 MiB/s | 466.4 KiB | 00m00s [ 52/172] Installing unzip-0:6.0-68.fc4 100% | 25.7 MiB/s | 473.8 KiB | 00m00s [ 53/172] Installing file-libs-0:5.46-7 100% | 540.0 MiB/s | 11.9 MiB | 00m00s [ 54/172] Installing file-0:5.46-7.fc44 100% | 8.1 MiB/s | 141.7 KiB | 00m00s [ 55/172] Installing libsmartcols-0:2.4 100% | 220.3 MiB/s | 225.6 KiB | 00m00s [ 56/172] Installing lua-libs-0:5.4.8-2 100% | 161.2 MiB/s | 330.0 KiB | 00m00s [ 57/172] Installing libcap-ng-0:0.8.5- 100% | 158.7 MiB/s | 162.5 KiB | 00m00s [ 58/172] Installing audit-libs-0:4.1.1 100% | 239.1 MiB/s | 489.6 KiB | 00m00s [ 59/172] Installing libsepol-0:3.9-2.f 100% | 306.5 MiB/s | 941.4 KiB | 00m00s [ 60/172] Installing pcre2-0:10.45-1.fc 100% | 274.2 MiB/s | 842.4 KiB | 00m00s [ 61/172] Installing libselinux-0:3.9-4 100% | 98.8 MiB/s | 202.4 KiB | 00m00s [ 62/172] Installing grep-0:3.12-2.fc43 100% | 45.1 MiB/s | 1.0 MiB | 00m00s [ 63/172] Installing findutils-1:4.10.0 100% | 80.1 MiB/s | 1.9 MiB | 00m00s [ 64/172] Installing sed-0:4.9-5.fc44.a 100% | 39.1 MiB/s | 881.7 KiB | 00m00s [ 65/172] Installing xz-1:5.8.1-2.fc44. 100% | 56.5 MiB/s | 1.4 MiB | 00m00s [ 66/172] Installing libmount-0:2.41.1- 100% | 205.7 MiB/s | 421.2 KiB | 00m00s [ 67/172] Installing json-c-0:0.18-7.fc 100% | 136.5 MiB/s | 139.8 KiB | 00m00s [ 68/172] Installing libffi-0:3.5.1-2.f 100% | 153.4 MiB/s | 157.1 KiB | 00m00s [ 69/172] Installing p11-kit-0:0.25.5-9 100% | 85.6 MiB/s | 2.4 MiB | 00m00s [ 70/172] Installing alternatives-0:1.3 100% | 5.3 MiB/s | 91.5 KiB | 00m00s [ 71/172] Installing p11-kit-trust-0:0. 100% | 17.5 MiB/s | 464.9 KiB | 00m00s [ 72/172] Installing libeconf-0:0.7.9-2 100% | 80.7 MiB/s | 82.6 KiB | 00m00s [ 73/172] Installing pam-libs-0:1.7.1-3 100% | 110.0 MiB/s | 225.2 KiB | 00m00s [ 74/172] Installing libcap-0:2.76-3.fc 100% | 26.4 MiB/s | 513.9 KiB | 00m00s [ 75/172] Installing systemd-libs-0:257 100% | 259.5 MiB/s | 2.3 MiB | 00m00s [ 76/172] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB | 00m00s [ 77/172] Installing zstd-0:1.5.7-2.fc4 100% | 71.7 MiB/s | 1.5 MiB | 00m00s [ 78/172] Installing util-linux-core-0: 100% | 94.9 MiB/s | 2.5 MiB | 00m00s [ 79/172] Installing libusb1-0:1.0.29-3 100% | 88.2 MiB/s | 180.6 KiB | 00m00s [ 80/172] Installing systemd-standalone 100% | 17.9 MiB/s | 329.9 KiB | 00m00s [ 81/172] Installing tar-2:1.35-6.fc43. 100% | 107.3 MiB/s | 3.0 MiB | 00m00s [ 82/172] Installing libsemanage-0:3.9- 100% | 176.7 MiB/s | 361.9 KiB | 00m00s [ 83/172] Installing zip-0:3.0-44.fc43. 100% | 37.4 MiB/s | 766.4 KiB | 00m00s [ 84/172] Installing gnupg2-keyboxd-0:2 100% | 32.9 MiB/s | 235.7 KiB | 00m00s [ 85/172] Installing libpsl-0:0.21.5-6. 100% | 130.2 MiB/s | 133.4 KiB | 00m00s [ 86/172] Installing liblastlog2-0:2.41 100% | 19.5 MiB/s | 139.9 KiB | 00m00s [ 87/172] Installing libfdisk-0:2.41.1- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [ 88/172] Installing nettle-0:3.10.1-2. 100% | 187.6 MiB/s | 768.4 KiB | 00m00s [ 89/172] Installing gnutls-0:3.8.10-3. 100% | 279.4 MiB/s | 3.6 MiB | 00m00s [ 90/172] Installing libxml2-0:2.12.10- 100% | 78.8 MiB/s | 1.9 MiB | 00m00s [ 91/172] Installing bzip2-0:1.0.8-21.f 100% | 9.5 MiB/s | 175.4 KiB | 00m00s [ 92/172] Installing add-determinism-0: 100% | 91.4 MiB/s | 2.1 MiB | 00m00s [ 93/172] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 94/172] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [ 95/172] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [ 96/172] Installing elfutils-libs-0:0. 100% | 182.8 MiB/s | 748.5 KiB | 00m00s [ 97/172] Installing ed-0:1.22.2-1.fc44 100% | 8.1 MiB/s | 158.4 KiB | 00m00s [ 98/172] Installing patch-0:2.8-2.fc44 100% | 14.4 MiB/s | 264.6 KiB | 00m00s [ 99/172] Installing cpio-0:2.15-6.fc43 100% | 49.8 MiB/s | 1.1 MiB | 00m00s [100/172] Installing diffutils-0:3.12-3 100% | 67.7 MiB/s | 1.6 MiB | 00m00s [101/172] Installing libgomp-0:15.2.1-1 100% | 252.9 MiB/s | 518.0 KiB | 00m00s [102/172] Installing libtool-ltdl-0:2.5 100% | 92.9 MiB/s | 95.1 KiB | 00m00s [103/172] Installing libpkgconf-0:2.3.0 100% | 131.8 MiB/s | 135.0 KiB | 00m00s [104/172] Installing pkgconf-0:2.3.0-3. 100% | 6.5 MiB/s | 113.0 KiB | 00m00s [105/172] Installing pkgconf-pkg-config 100% | 110.8 KiB/s | 1.8 KiB | 00m00s [106/172] Installing gdbm-libs-1:1.23-1 100% | 115.1 MiB/s | 235.8 KiB | 00m00s [107/172] Installing cyrus-sasl-lib-0:2 100% | 96.7 MiB/s | 2.4 MiB | 00m00s [108/172] Installing jansson-0:2.14-3.f 100% | 155.0 MiB/s | 158.7 KiB | 00m00s [109/172] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.1 KiB | 00m00s [110/172] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.2 KiB | 00m00s [111/172] Installing libbrotli-0:1.1.0- 100% | 222.5 MiB/s | 911.3 KiB | 00m00s [112/172] Installing libnghttp2-0:1.66. 100% | 195.5 MiB/s | 200.2 KiB | 00m00s [113/172] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.6 KiB | 00m00s [114/172] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.1 KiB | 00m00s [115/172] Installing coreutils-common-0 100% | 297.1 MiB/s | 11.3 MiB | 00m00s [116/172] Installing openssl-libs-1:3.5 100% | 306.6 MiB/s | 7.4 MiB | 00m00s [117/172] Installing coreutils-0:9.7-5. 100% | 173.7 MiB/s | 8.2 MiB | 00m00s [118/172] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.4 MiB | 00m02s [119/172] Installing libarchive-0:3.8.1 100% | 190.9 MiB/s | 977.3 KiB | 00m00s [120/172] Installing krb5-libs-0:1.21.3 100% | 133.3 MiB/s | 2.5 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc44.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc44.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [121/172] Installing tpm2-tss-0:4.1.3-8 100% | 246.4 MiB/s | 2.2 MiB | 00m00s [122/172] Installing gnupg2-gpg-agent-0 100% | 28.8 MiB/s | 854.5 KiB | 00m00s [123/172] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [124/172] Installing libssh-0:0.11.2-2. 100% | 191.6 MiB/s | 588.7 KiB | 00m00s [125/172] Installing gzip-0:1.14-1.fc44 100% | 21.6 MiB/s | 443.2 KiB | 00m00s [126/172] Installing rpm-sequoia-0:1.9. 100% | 287.9 MiB/s | 2.3 MiB | 00m00s [127/172] Installing rpm-libs-0:5.99.91 100% | 243.4 MiB/s | 996.9 KiB | 00m00s [128/172] Installing libfsverity-0:1.6- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [129/172] Installing libevent-0:2.1.12- 100% | 271.3 MiB/s | 1.1 MiB | 00m00s [130/172] Installing openldap-0:2.6.10- 100% | 171.3 MiB/s | 701.7 KiB | 00m00s [131/172] Installing libcurl-0:8.15.0-2 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [132/172] Installing elfutils-debuginfo 100% | 7.9 MiB/s | 146.2 KiB | 00m00s [133/172] Installing binutils-0:2.45-3. 100% | 274.4 MiB/s | 30.2 MiB | 00m00s [134/172] Installing elfutils-0:0.193-3 100% | 114.4 MiB/s | 3.2 MiB | 00m00s [135/172] Installing gdb-minimal-0:16.3 100% | 224.9 MiB/s | 13.0 MiB | 00m00s [136/172] Installing debugedit-0:5.2-2. 100% | 13.7 MiB/s | 252.1 KiB | 00m00s [137/172] Installing curl-0:8.15.0-2.fc 100% | 16.5 MiB/s | 472.6 KiB | 00m00s [138/172] Installing rpm-0:5.99.91-4.fc 100% | 59.4 MiB/s | 2.7 MiB | 00m00s [139/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [140/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [141/172] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [142/172] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [143/172] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [144/172] Installing gnupg2-dirmngr-0:2 100% | 25.9 MiB/s | 715.2 KiB | 00m00s [145/172] Installing gnupg2-0:2.4.8-4.f 100% | 163.8 MiB/s | 6.7 MiB | 00m00s [146/172] Installing rpm-sign-libs-0:5. 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [147/172] Installing rpm-build-libs-0:5 100% | 129.4 MiB/s | 265.0 KiB | 00m00s [148/172] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [149/172] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [150/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [151/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [152/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [154/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [155/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [156/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [157/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [158/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [159/172] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.6 KiB | 00m00s [160/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [161/172] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [162/172] Installing redhat-rpm-config- 100% | 92.3 MiB/s | 189.1 KiB | 00m00s [163/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [164/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [165/172] Installing go-srpm-macros-0:3 100% | 61.3 MiB/s | 62.7 KiB | 00m00s [166/172] Installing rpm-build-0:5.99.9 100% | 28.2 MiB/s | 605.9 KiB | 00m00s [167/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 25.8 MiB/s | 52.8 KiB | 00m00s [169/172] Installing util-linux-0:2.41. 100% | 131.9 MiB/s | 6.9 MiB | 00m00s [170/172] Installing which-0:2.23-3.fc4 100% | 6.5 MiB/s | 125.6 KiB | 00m00s [171/172] Installing shadow-utils-2:4.1 100% | 100.4 MiB/s | 4.6 MiB | 00m00s [172/172] Installing info-0:7.2-6.fc44. 100% | 197.4 KiB/s | 421.7 KiB | 00m02s Warning: skipped OpenPGP checks for 55 packages from repository: copr_base Complete! Updating and loading repositories: Additional repo copr_fedora_llvm_team_ 100% | 58.6 KiB/s | 1.5 KiB | 00m00s Additional repo copr_tstellar_fedora_c 100% | 58.1 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 59.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 45.2 KiB/s | 14.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: fedora-clang-default-cc noarch 1-1.fc43 copr_tstellar_fedora_clang_default_cc 17.0 B Installing dependencies: annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc aarch64 12.99-1.fc43 fedora 1.0 MiB clang aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 69.3 MiB clang-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 109.7 MiB clang-resource-filesystem aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 15.3 KiB compiler-rt aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 34.2 MiB cpp aarch64 15.2.1-1.fc43 fedora 35.5 MiB expat aarch64 2.7.1-3.fc44 copr_base 354.0 KiB gcc aarch64 15.2.1-1.fc43 fedora 99.5 MiB gcc-c++ aarch64 15.2.1-1.fc43 fedora 38.9 MiB gcc-plugin-annobin aarch64 15.2.1-1.fc43 fedora 69.2 KiB glibc-devel aarch64 2.42.9000-1.fc44 fedora 2.3 MiB kernel-headers aarch64 6.17.0-0.rc2.24.fc44 fedora 6.6 MiB libasan aarch64 15.2.1-1.fc43 fedora 1.5 MiB libatomic aarch64 15.2.1-1.fc43 fedora 68.8 KiB libedit aarch64 3.1-56.20250104cvs.fc44 copr_base 280.8 KiB libmpc aarch64 1.3.1-8.fc44 copr_base 152.6 KiB libomp aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 2.8 MiB libstdc++-devel aarch64 15.2.1-1.fc43 fedora 36.4 MiB libubsan aarch64 15.2.1-1.fc43 fedora 475.6 KiB libxcrypt-devel aarch64 4.4.38-8.fc43 fedora 30.8 KiB lld aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 44.9 KiB lld-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 6.2 MiB llvm aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 86.0 MiB llvm-filesystem aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 0.0 B llvm-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 133.7 MiB make aarch64 1:4.4.1-11.fc44 copr_base 1.8 MiB mpdecimal aarch64 4.0.1-2.fc44 copr_base 281.2 KiB python-pip-wheel noarch 25.1.1-16.fc44 fedora 1.2 MiB python3 aarch64 3.14.0~rc2-1.fc44 fedora 84.9 KiB python3-libs aarch64 3.14.0~rc2-1.fc44 fedora 44.8 MiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB Transaction Summary: Installing: 33 packages Total size of inbound packages is 183 MiB. Need to download 183 MiB. After this operation, 715 MiB extra will be used (install 715 MiB, remove 0 B). [ 1/33] fedora-clang-default-cc-0:1-1.f 100% | 495.6 KiB/s | 7.4 KiB | 00m00s [ 2/33] clang-0:22.0.0~pre20250813.g6ab 100% | 125.7 MiB/s | 7.4 MiB | 00m00s [ 3/33] clang-libs-0:22.0.0~pre20250813 100% | 157.6 MiB/s | 29.0 MiB | 00m00s [ 4/33] llvm-libs-0:22.0.0~pre20250813. 100% | 154.1 MiB/s | 33.6 MiB | 00m00s [ 5/33] clang-resource-filesystem-0:22. 100% | 13.5 MiB/s | 13.8 KiB | 00m00s [ 6/33] llvm-filesystem-0:22.0.0~pre202 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 7/33] gcc-c++-0:15.2.1-1.fc43.aarch64 100% | 61.8 MiB/s | 14.0 MiB | 00m00s [ 8/33] libstdc++-devel-0:15.2.1-1.fc43 100% | 47.4 MiB/s | 5.2 MiB | 00m00s [ 9/33] glibc-devel-0:2.42.9000-1.fc44. 100% | 78.5 MiB/s | 563.0 KiB | 00m00s [10/33] libasan-0:15.2.1-1.fc43.aarch64 100% | 44.5 MiB/s | 501.1 KiB | 00m00s [11/33] libatomic-0:15.2.1-1.fc43.aarch 100% | 21.4 MiB/s | 43.7 KiB | 00m00s [12/33] libubsan-0:15.2.1-1.fc43.aarch6 100% | 31.2 MiB/s | 223.3 KiB | 00m00s [13/33] llvm-0:22.0.0~pre20250813.g6abb 100% | 279.2 MiB/s | 23.7 MiB | 00m00s [14/33] lld-0:22.0.0~pre20250813.g6abbf 100% | 33.4 MiB/s | 34.2 KiB | 00m00s [15/33] libomp-0:22.0.0~pre20250813.g6a 100% | 153.4 MiB/s | 785.4 KiB | 00m00s [16/33] kernel-headers-0:6.17.0-0.rc2.2 100% | 138.7 MiB/s | 1.7 MiB | 00m00s [17/33] libxcrypt-devel-0:4.4.38-8.fc43 100% | 9.5 MiB/s | 29.1 KiB | 00m00s [18/33] compiler-rt-0:22.0.0~pre2025081 100% | 230.2 MiB/s | 2.5 MiB | 00m00s [19/33] python3-0:3.14.0~rc2-1.fc44.aar 100% | 13.5 MiB/s | 27.6 KiB | 00m00s [20/33] lld-libs-0:22.0.0~pre20250813.g 100% | 179.6 MiB/s | 1.8 MiB | 00m00s [21/33] python3-libs-0:3.14.0~rc2-1.fc4 100% | 40.5 MiB/s | 9.7 MiB | 00m00s [22/33] python-pip-wheel-0:25.1.1-16.fc 100% | 16.5 MiB/s | 1.2 MiB | 00m00s [23/33] libedit-0:3.1-56.20250104cvs.fc 100% | 51.2 MiB/s | 104.9 KiB | 00m00s [24/33] expat-0:2.7.1-3.fc44.aarch64 100% | 37.2 MiB/s | 114.4 KiB | 00m00s [25/33] mpdecimal-0:4.0.1-2.fc44.aarch6 100% | 99.5 MiB/s | 101.9 KiB | 00m00s [26/33] tzdata-0:2025b-3.fc43.noarch 100% | 36.7 MiB/s | 713.9 KiB | 00m00s [27/33] libmpc-0:1.3.1-8.fc44.aarch64 100% | 33.7 MiB/s | 69.0 KiB | 00m00s [28/33] make-1:4.4.1-11.fc44.aarch64 100% | 139.9 MiB/s | 573.0 KiB | 00m00s [29/33] cpp-0:15.2.1-1.fc43.aarch64 100% | 20.9 MiB/s | 11.7 MiB | 00m01s [30/33] annobin-plugin-gcc-0:12.99-1.fc 100% | 22.1 MiB/s | 995.9 KiB | 00m00s [31/33] gcc-plugin-annobin-0:15.2.1-1.f 100% | 10.9 MiB/s | 55.8 KiB | 00m00s [32/33] annobin-docs-0:12.99-1.fc43.noa 100% | 14.6 MiB/s | 89.5 KiB | 00m00s [33/33] gcc-0:15.2.1-1.fc43.aarch64 100% | 35.8 MiB/s | 36.2 MiB | 00m01s -------------------------------------------------------------------------------- [33/33] Total 100% | 146.2 MiB/s | 182.7 MiB | 00m01s Running transaction [ 1/35] Verify package files 100% | 51.0 B/s | 33.0 B | 00m01s [ 2/35] Prepare transaction 100% | 578.0 B/s | 33.0 B | 00m00s [ 3/35] Installing libmpc-0:1.3.1-8.fc4 100% | 75.3 MiB/s | 154.1 KiB | 00m00s [ 4/35] Installing clang-resource-files 100% | 5.4 MiB/s | 16.7 KiB | 00m00s [ 5/35] Installing libstdc++-devel-0:15 100% | 351.5 MiB/s | 36.6 MiB | 00m00s [ 6/35] Installing cpp-0:15.2.1-1.fc43. 100% | 262.7 MiB/s | 35.5 MiB | 00m00s [ 7/35] Installing annobin-docs-0:12.99 100% | 97.7 MiB/s | 100.1 KiB | 00m00s [ 8/35] Installing make-1:4.4.1-11.fc44 100% | 63.8 MiB/s | 1.8 MiB | 00m00s [ 9/35] Installing tzdata-0:2025b-3.fc4 100% | 35.7 MiB/s | 1.9 MiB | 00m00s [10/35] Installing mpdecimal-0:4.0.1-2. 100% | 138.0 MiB/s | 282.7 KiB | 00m00s [11/35] Installing expat-0:2.7.1-3.fc44 100% | 17.4 MiB/s | 356.0 KiB | 00m00s [12/35] Installing libedit-0:3.1-56.202 100% | 137.9 MiB/s | 282.4 KiB | 00m00s [13/35] Installing python-pip-wheel-0:2 100% | 155.6 MiB/s | 1.2 MiB | 00m00s [14/35] Installing python3-libs-0:3.14. 100% | 241.9 MiB/s | 45.2 MiB | 00m00s [15/35] Installing python3-0:3.14.0~rc2 100% | 4.5 MiB/s | 86.7 KiB | 00m00s [16/35] Installing compiler-rt-0:22.0.0 100% | 535.0 MiB/s | 34.2 MiB | 00m00s [17/35] Installing kernel-headers-0:6.1 100% | 125.1 MiB/s | 6.8 MiB | 00m00s [18/35] Installing glibc-devel-0:2.42.9 100% | 100.9 MiB/s | 2.3 MiB | 00m00s [19/35] Installing libxcrypt-devel-0:4. 100% | 32.3 MiB/s | 33.1 KiB | 00m00s [20/35] Installing libubsan-0:15.2.1-1. 100% | 232.6 MiB/s | 476.4 KiB | 00m00s [21/35] Installing libatomic-0:15.2.1-1 100% | 68.0 MiB/s | 69.6 KiB | 00m00s [22/35] Installing libasan-0:15.2.1-1.f 100% | 256.8 MiB/s | 1.5 MiB | 00m00s [23/35] Installing gcc-0:15.2.1-1.fc43. 100% | 310.9 MiB/s | 99.5 MiB | 00m00s [24/35] Installing gcc-c++-0:15.2.1-1.f 100% | 262.6 MiB/s | 38.9 MiB | 00m00s [25/35] Installing llvm-filesystem-0:22 100% | 1.0 MiB/s | 1.1 KiB | 00m00s [26/35] Installing llvm-libs-0:22.0.0~p 100% | 348.2 MiB/s | 133.7 MiB | 00m00s [27/35] Installing clang-libs-0:22.0.0~ 100% | 348.5 MiB/s | 109.8 MiB | 00m00s [28/35] Installing clang-0:22.0.0~pre20 100% | 467.9 MiB/s | 69.3 MiB | 00m00s [29/35] Installing llvm-0:22.0.0~pre202 100% | 299.0 MiB/s | 86.1 MiB | 00m00s [30/35] Installing libomp-0:22.0.0~pre2 100% | 308.6 MiB/s | 2.8 MiB | 00m00s [31/35] Installing lld-libs-0:22.0.0~pr 100% | 326.9 MiB/s | 6.2 MiB | 00m00s [32/35] Installing lld-0:22.0.0~pre2025 100% | 1.7 MiB/s | 47.9 KiB | 00m00s [33/35] Installing fedora-clang-default 100% | 281.2 KiB/s | 288.0 B | 00m00s [34/35] Installing annobin-plugin-gcc-0 100% | 58.7 MiB/s | 1.0 MiB | 00m00s [35/35] Installing gcc-plugin-annobin-0 100% | 536.3 KiB/s | 70.8 KiB | 00m00s Warning: skipped OpenPGP checks for 16 packages from repositories: copr_base, copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813, copr_tstellar_fedora_clang_default_cc Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-2.fc43.aarch64 alternatives-1.33-2.fc44.aarch64 annobin-docs-12.99-1.fc43.noarch annobin-plugin-gcc-12.99-1.fc43.aarch64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.1-2.fc44.aarch64 bash-5.3.0-2.fc44.aarch64 binutils-2.45-3.fc44.aarch64 build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch bzip2-1.0.8-21.fc44.aarch64 bzip2-libs-1.0.8-21.fc44.aarch64 ca-certificates-2024.2.69_v8.0.401-8.fc44.noarch clang-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 clang-libs-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 clang-resource-filesystem-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 compiler-rt-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 coreutils-9.7-5.fc43.aarch64 coreutils-common-9.7-5.fc43.aarch64 cpio-2.15-6.fc43.aarch64 cpp-15.2.1-1.fc43.aarch64 crypto-policies-20250714-4.gitcd6043a.fc44.noarch curl-8.15.0-2.fc44.aarch64 cyrus-sasl-lib-2.1.28-33.fc44.aarch64 debugedit-5.2-2.fc44.aarch64 diffutils-3.12-3.fc44.aarch64 dwz-0.16-2.fc43.aarch64 ed-1.22.2-1.fc44.aarch64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.193-3.fc43.aarch64 elfutils-debuginfod-client-0.193-3.fc43.aarch64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.aarch64 elfutils-libs-0.193-3.fc43.aarch64 expat-2.7.1-3.fc44.aarch64 fedora-clang-default-cc-1-1.fc43.noarch fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.2.noarch fedora-release-common-44-0.2.noarch fedora-release-identity-basic-44-0.2.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-7.fc44.aarch64 file-libs-5.46-7.fc44.aarch64 filesystem-3.18-50.fc43.aarch64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc44.aarch64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-1-1.fc44.noarch gawk-5.3.2-2.fc44.aarch64 gcc-15.2.1-1.fc43.aarch64 gcc-c++-15.2.1-1.fc43.aarch64 gcc-plugin-annobin-15.2.1-1.fc43.aarch64 gdb-minimal-16.3-5.fc44.aarch64 gdbm-libs-1.23-10.fc44.aarch64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-1.fc44.aarch64 glibc-common-2.42.9000-1.fc44.aarch64 glibc-devel-2.42.9000-1.fc44.aarch64 glibc-gconv-extra-2.42.9000-1.fc44.aarch64 glibc-minimal-langpack-2.42.9000-1.fc44.aarch64 gmp-6.3.0-4.fc43.aarch64 gnat-srpm-macros-6-8.fc43.noarch gnupg2-2.4.8-4.fc44.aarch64 gnupg2-dirmngr-2.4.8-4.fc44.aarch64 gnupg2-gpg-agent-2.4.8-4.fc44.aarch64 gnupg2-gpgconf-2.4.8-4.fc44.aarch64 gnupg2-keyboxd-2.4.8-4.fc44.aarch64 gnupg2-verify-2.4.8-4.fc44.aarch64 gnutls-3.8.10-3.fc43.aarch64 go-srpm-macros-3.7.0-4.fc43.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.aarch64 gzip-1.14-1.fc44.aarch64 ima-evm-utils-libs-1.6.2-6.fc44.aarch64 info-7.2-6.fc44.aarch64 jansson-2.14-3.fc44.aarch64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc44.aarch64 kernel-headers-6.17.0-0.rc2.24.fc44.aarch64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc44.aarch64 krb5-libs-1.21.3-7.fc43.aarch64 libacl-2.3.2-4.fc43.aarch64 libarchive-3.8.1-3.fc44.aarch64 libasan-15.2.1-1.fc43.aarch64 libassuan-2.5.7-4.fc44.aarch64 libatomic-15.2.1-1.fc43.aarch64 libattr-2.5.2-6.fc43.aarch64 libblkid-2.41.1-16.fc44.aarch64 libbrotli-1.1.0-9.fc44.aarch64 libcap-2.76-3.fc44.aarch64 libcap-ng-0.8.5-7.fc44.aarch64 libcom_err-1.47.3-2.fc44.aarch64 libcurl-8.15.0-2.fc44.aarch64 libeconf-0.7.9-2.fc43.aarch64 libedit-3.1-56.20250104cvs.fc44.aarch64 libevent-2.1.12-16.fc43.aarch64 libfdisk-2.41.1-16.fc44.aarch64 libffi-3.5.1-2.fc43.aarch64 libfsverity-1.6-3.fc43.aarch64 libgcc-15.2.1-1.fc43.aarch64 libgcrypt-1.11.1-2.fc43.aarch64 libgomp-15.2.1-1.fc43.aarch64 libgpg-error-1.55-2.fc44.aarch64 libidn2-2.3.8-2.fc44.aarch64 libksba-1.6.7-4.fc44.aarch64 liblastlog2-2.41.1-16.fc44.aarch64 libmount-2.41.1-16.fc44.aarch64 libmpc-1.3.1-8.fc44.aarch64 libnghttp2-1.66.0-2.fc44.aarch64 libomp-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 libpkgconf-2.3.0-3.fc44.aarch64 libpsl-0.21.5-6.fc44.aarch64 libselinux-3.9-4.fc44.aarch64 libsemanage-3.9-3.fc44.aarch64 libsepol-3.9-2.fc44.aarch64 libsmartcols-2.41.1-16.fc44.aarch64 libssh-0.11.2-2.fc43.aarch64 libssh-config-0.11.2-2.fc43.noarch libstdc++-15.2.1-1.fc43.aarch64 libstdc++-devel-15.2.1-1.fc43.aarch64 libtasn1-4.20.0-2.fc43.aarch64 libtool-ltdl-2.5.4-7.fc43.aarch64 libubsan-15.2.1-1.fc43.aarch64 libunistring-1.1-10.fc44.aarch64 libusb1-1.0.29-3.fc43.aarch64 libuuid-2.41.1-16.fc44.aarch64 libverto-0.3.2-11.fc43.aarch64 libxcrypt-4.4.38-8.fc43.aarch64 libxcrypt-devel-4.4.38-8.fc43.aarch64 libxml2-2.12.10-4.fc44.aarch64 libzstd-1.5.7-2.fc43.aarch64 lld-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 lld-libs-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 llvm-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 llvm-filesystem-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 llvm-libs-22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44.aarch64 lua-libs-5.4.8-2.fc43.aarch64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.aarch64 make-4.4.1-11.fc44.aarch64 mpdecimal-4.0.1-2.fc44.aarch64 mpfr-4.2.2-2.fc43.aarch64 ncurses-base-6.5-7.20250614.fc44.noarch ncurses-libs-6.5-7.20250614.fc44.aarch64 nettle-3.10.1-2.fc43.aarch64 npth-1.8-3.fc44.aarch64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-3.fc43.aarch64 openssl-libs-3.5.1-2.fc43.aarch64 p11-kit-0.25.5-9.fc43.aarch64 p11-kit-trust-0.25.5-9.fc43.aarch64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc44.aarch64 patch-2.8-2.fc44.aarch64 pcre2-10.45-1.fc44.1.aarch64 pcre2-syntax-10.45-1.fc44.1.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc44.aarch64 pkgconf-m4-2.3.0-3.fc44.noarch pkgconf-pkg-config-2.3.0-3.fc44.aarch64 popt-1.19-9.fc44.aarch64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.3-2.fc43.noarch python-pip-wheel-25.1.1-16.fc44.noarch python-srpm-macros-3.14-5.fc43.noarch python3-3.14.0~rc2-1.fc44.aarch64 python3-libs-3.14.0~rc2-1.fc44.aarch64 qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.9.1-2.fc43.noarch readline-8.3-2.fc44.aarch64 redhat-rpm-config-343-11.fc44.noarch rpm-5.99.91-4.fc44.aarch64 rpm-build-5.99.91-4.fc44.aarch64 rpm-build-libs-5.99.91-4.fc44.aarch64 rpm-libs-5.99.91-4.fc44.aarch64 rpm-sequoia-1.9.0-2.fc43.aarch64 rpm-sign-libs-5.99.91-4.fc44.aarch64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-5.fc44.aarch64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc44.aarch64 sqlite-libs-3.50.2-2.fc43.aarch64 systemd-libs-257.7-1.fc43.aarch64 systemd-standalone-sysusers-257.7-1.fc43.aarch64 tar-1.35-6.fc43.aarch64 tpm2-tss-4.1.3-8.fc44.aarch64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch tzdata-2025b-3.fc43.noarch unzip-6.0-68.fc44.aarch64 util-linux-2.41.1-16.fc44.aarch64 util-linux-core-2.41.1-16.fc44.aarch64 which-2.23-3.fc43.aarch64 xxhash-libs-0.8.3-3.fc44.aarch64 xz-5.8.1-2.fc44.aarch64 xz-libs-5.8.1-2.fc44.aarch64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.aarch64 zlib-ng-compat-2.2.5-1.fc44.aarch64 zstd-1.5.7-2.fc43.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1755216000 Wrote: /builddir/build/SRPMS/openbabel-3.1.1-39.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-oowjd_01/openbabel/openbabel.spec) Config(child) 0 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.1.1-39.fc44.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1755767217.818727/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1755767217.818727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.91-4.fc44.aarch64 rpm-sequoia-1.9.0-2.fc43.aarch64 dnf5-5.2.16.0-3.fc44.aarch64 dnf5-plugins-5.2.16.0-3.fc44.aarch64 Finish: chroot init Start: build phase for openbabel-3.1.1-39.fc44.src.rpm Start: build setup for openbabel-3.1.1-39.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1755216000 Wrote: /builddir/build/SRPMS/openbabel-3.1.1-39.fc44.src.rpm Updating and loading repositories: Additional repo copr_fedora_llvm_team_ 100% | 60.9 KiB/s | 1.5 KiB | 00m00s Additional repo copr_tstellar_fedora_c 100% | 60.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 61.4 KiB/s | 1.5 KiB | 00m00s fedora 100% | 66.9 KiB/s | 14.1 KiB | 00m00s Repositories loaded. Package "gcc-c++-15.2.1-1.fc43.aarch64" is already installed. Package "make-1:4.4.1-11.fc44.aarch64" is already installed. Package Arch Version Repository Size Downgrading: clang aarch64 20.1.8-18.fc44 fedora 68.5 MiB replacing clang aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 69.3 MiB clang-libs aarch64 20.1.8-18.fc44 fedora 112.1 MiB replacing clang-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 109.7 MiB clang-resource-filesystem aarch64 20.1.8-18.fc44 fedora 15.3 KiB replacing clang-resource-filesystem aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 15.3 KiB compiler-rt aarch64 20.1.8-18.fc44 fedora 33.8 MiB replacing compiler-rt aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 34.2 MiB libomp aarch64 20.1.8-18.fc44 fedora 2.1 MiB replacing libomp aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 2.8 MiB lld aarch64 20.1.8-18.fc44 fedora 44.2 KiB replacing lld aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 44.9 KiB lld-libs aarch64 20.1.8-18.fc44 fedora 5.9 MiB replacing lld-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 6.2 MiB llvm aarch64 20.1.8-18.fc44 fedora 86.2 MiB replacing llvm aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 86.0 MiB llvm-filesystem aarch64 20.1.8-18.fc44 fedora 0.0 B replacing llvm-filesystem aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 0.0 B llvm-libs aarch64 20.1.8-18.fc44 fedora 132.7 MiB replacing llvm-libs aarch64 22.0.0~pre20250813.g6abbfcae6ee25d-1.fc44 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250813 133.7 MiB Installing: ImageMagick aarch64 1:7.1.1.47-3.fc44 copr_base 139.6 KiB boost-devel aarch64 1.83.0-16.fc44 fedora 143.0 MiB cmake aarch64 3.31.6-4.fc43 fedora 29.7 MiB desktop-file-utils aarch64 0.28-2.fc44 copr_base 317.8 KiB dos2unix aarch64 7.5.2-4.fc44 copr_base 847.3 KiB eigen3-devel noarch 3.4.0-18.fc43 fedora 8.4 MiB inchi-devel aarch64 1.0.6-13.fc43 fedora 97.0 KiB libxml2-devel aarch64 2.12.10-4.fc44 fedora 3.4 MiB perl-devel aarch64 4:5.42.0-520.fc43 fedora 3.8 MiB perl-generators noarch 1.16-8.fc43 fedora 21.8 KiB python3-devel aarch64 3.14.0~rc2-1.fc44 fedora 1.9 MiB python3-setuptools noarch 78.1.1-12.fc44 fedora 9.0 MiB rapidjson-devel aarch64 1.1.0^20241222git24b5e7a-3.fc43 fedora 785.8 KiB ruby-devel aarch64 3.4.5-27.fc44 fedora 1.6 MiB swig aarch64 4.3.1-5.fc43 fedora 6.1 MiB wxGTK-devel aarch64 3.2.8-2.fc43 fedora 74.2 KiB Installing dependencies: ImageMagick-libs aarch64 1:7.1.1.47-3.fc44 copr_base 13.7 MiB LibRaw aarch64 0.21.4-2.fc43 fedora 2.3 MiB SDL3 aarch64 3.2.20-1.fc44 copr_base 2.9 MiB abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB adobe-mappings-cmap noarch 20231115-3.fc43 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-3.fc43 fedora 582.1 KiB adobe-mappings-pdf noarch 20190401-10.fc43 fedora 4.4 MiB adwaita-cursor-theme noarch 48.1-2.fc43 fedora 11.4 MiB adwaita-icon-theme noarch 48.1-2.fc43 fedora 1.2 MiB adwaita-icon-theme-legacy noarch 46.2-4.fc43 fedora 2.1 MiB alsa-lib aarch64 1.2.14-4.fc43 fedora 1.5 MiB at-spi2-atk aarch64 2.57.1-2.fc44 fedora 359.3 KiB at-spi2-atk-devel aarch64 2.57.1-2.fc44 fedora 1.6 KiB at-spi2-core aarch64 2.57.1-2.fc44 fedora 1.6 MiB at-spi2-core-devel aarch64 2.57.1-2.fc44 fedora 4.3 MiB atk aarch64 2.57.1-2.fc44 fedora 296.8 KiB atk-devel aarch64 2.57.1-2.fc44 fedora 5.9 MiB avahi-glib aarch64 0.9~rc2-6.fc43 fedora 67.6 KiB avahi-libs aarch64 0.9~rc2-6.fc43 fedora 230.4 KiB boost aarch64 1.83.0-16.fc44 fedora 1.3 KiB boost-atomic aarch64 1.83.0-16.fc44 fedora 68.8 KiB boost-chrono aarch64 1.83.0-16.fc44 fedora 69.4 KiB boost-container aarch64 1.83.0-16.fc44 fedora 69.4 KiB boost-context aarch64 1.83.0-16.fc44 fedora 68.3 KiB boost-contract aarch64 1.83.0-16.fc44 fedora 134.7 KiB boost-coroutine aarch64 1.83.0-16.fc44 fedora 69.1 KiB boost-date-time aarch64 1.83.0-16.fc44 fedora 68.2 KiB boost-fiber aarch64 1.83.0-16.fc44 fedora 134.4 KiB boost-filesystem aarch64 1.83.0-16.fc44 fedora 134.8 KiB boost-graph aarch64 1.83.0-16.fc44 fedora 334.0 KiB boost-iostreams aarch64 1.83.0-16.fc44 fedora 134.2 KiB boost-json aarch64 1.83.0-16.fc44 fedora 328.4 KiB boost-locale aarch64 1.83.0-16.fc44 fedora 594.6 KiB boost-log aarch64 1.83.0-16.fc44 fedora 1.5 MiB boost-math aarch64 1.83.0-16.fc44 fedora 862.2 KiB boost-nowide aarch64 1.83.0-16.fc44 fedora 68.9 KiB boost-numpy3 aarch64 1.83.0-16.fc44 fedora 69.4 KiB boost-program-options aarch64 1.83.0-16.fc44 fedora 267.4 KiB boost-python3 aarch64 1.83.0-16.fc44 fedora 268.3 KiB boost-random aarch64 1.83.0-16.fc44 fedora 69.5 KiB boost-regex aarch64 1.83.0-16.fc44 fedora 266.3 KiB boost-serialization aarch64 1.83.0-16.fc44 fedora 467.4 KiB boost-stacktrace aarch64 1.83.0-16.fc44 fedora 203.7 KiB boost-system aarch64 1.83.0-16.fc44 fedora 68.2 KiB boost-test aarch64 1.83.0-16.fc44 fedora 728.4 KiB boost-thread aarch64 1.83.0-16.fc44 fedora 136.3 KiB boost-timer aarch64 1.83.0-16.fc44 fedora 69.0 KiB boost-type_erasure aarch64 1.83.0-16.fc44 fedora 70.0 KiB boost-wave aarch64 1.83.0-16.fc44 fedora 854.2 KiB brotli aarch64 1.1.0-9.fc44 copr_base 67.4 KiB brotli-devel aarch64 1.1.0-9.fc44 copr_base 65.6 KiB bubblewrap aarch64 0.11.0-2.fc44 copr_base 182.8 KiB bzip2-devel aarch64 1.0.8-21.fc44 copr_base 309.8 KiB cairo aarch64 1.18.4-2.fc44 copr_base 1.9 MiB cairo-devel aarch64 1.18.4-2.fc44 copr_base 2.3 MiB cairo-gobject aarch64 1.18.4-2.fc44 copr_base 67.1 KiB cairo-gobject-devel aarch64 1.18.4-2.fc44 copr_base 7.0 KiB cdparanoia-libs aarch64 10.2-48.fc43 fedora 137.6 KiB cmake-data noarch 3.31.6-4.fc43 fedora 8.5 MiB cmake-filesystem aarch64 3.31.6-4.fc43 fedora 0.0 B cmake-rpm-macros noarch 3.31.6-4.fc43 fedora 7.7 KiB colord-libs aarch64 1.4.8-2.fc43 fedora 970.2 KiB cups-filesystem noarch 1:2.4.12-4.fc44 copr_base 0.0 B cups-libs aarch64 1:2.4.12-4.fc44 copr_base 859.0 KiB dbus aarch64 1:1.16.0-4.fc44 copr_base 0.0 B dbus-devel aarch64 1:1.16.0-4.fc44 copr_base 131.7 KiB dbus-libs aarch64 1:1.16.0-4.fc44 copr_base 464.3 KiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B enchant2 aarch64 2.8.12-4.fc44 fedora 329.7 KiB fftw-libs-double aarch64 3.3.10-16.fc44 fedora 1.8 MiB flac-libs aarch64 1.5.0-3.fc44 copr_base 619.8 KiB flexiblas aarch64 3.4.5-4.fc43 fedora 50.4 KiB flexiblas-netlib aarch64 3.4.5-4.fc43 fedora 9.3 MiB flexiblas-openblas-openmp aarch64 3.4.5-4.fc43 fedora 67.3 KiB flite aarch64 2.2-12.fc43 fedora 21.5 MiB fontconfig aarch64 2.17.0-3.fc44 copr_base 1.3 MiB fontconfig-devel aarch64 2.17.0-3.fc44 copr_base 123.6 KiB fonts-filesystem noarch 1:2.0.5-23.fc43 fedora 0.0 B freetype aarch64 2.13.3-3.fc43 fedora 814.5 KiB freetype-devel aarch64 2.13.3-3.fc43 fedora 8.5 MiB fribidi aarch64 1.0.16-3.fc44 copr_base 246.0 KiB fribidi-devel aarch64 1.0.16-3.fc44 copr_base 78.0 KiB gdk-pixbuf2 aarch64 2.43.3-7.fc44 fedora 2.6 MiB gdk-pixbuf2-devel aarch64 2.43.3-7.fc44 fedora 2.4 MiB gdk-pixbuf2-modules aarch64 2.43.3-7.fc44 fedora 271.0 KiB gettext aarch64 0.25.1-2.fc44 copr_base 13.6 MiB gettext-envsubst aarch64 0.25.1-2.fc44 copr_base 106.8 KiB gettext-libs aarch64 0.25.1-2.fc44 copr_base 2.3 MiB gettext-runtime aarch64 0.25.1-2.fc44 copr_base 508.2 KiB glib2 aarch64 2.85.3-2.fc44 fedora 15.4 MiB glib2-devel aarch64 2.85.3-2.fc44 fedora 16.2 MiB glycin-devel aarch64 2.0~alpha.6-3.fc43 fedora 111.9 KiB glycin-libs aarch64 2.0~alpha.6-3.fc43 fedora 4.8 MiB glycin-loaders aarch64 2.0~alpha.6-3.fc43 fedora 11.6 MiB google-droid-sans-fonts noarch 20200215-23.fc43 fedora 6.3 MiB google-noto-fonts-common noarch 20250801-4.fc43 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250801-4.fc43 fedora 1.4 MiB graphene aarch64 1.10.8-2.fc44 copr_base 178.3 KiB graphite2 aarch64 1.3.14-19.fc44 copr_base 240.6 KiB graphite2-devel aarch64 1.3.14-19.fc44 copr_base 49.3 KiB graphviz-libs aarch64 13.1.1-3.fc44 fedora 1.3 MiB groff-base aarch64 1.23.0-9.fc44 copr_base 4.3 MiB gsm aarch64 1.0.22-9.fc43 fedora 76.7 KiB gssdp aarch64 1.6.4-2.fc43 fedora 190.5 KiB gstreamer1 aarch64 1.26.5-2.fc43 fedora 5.8 MiB gstreamer1-plugins-bad-free-libs aarch64 1.26.5-4.fc44 fedora 3.8 MiB gstreamer1-plugins-base aarch64 1.26.5-1.fc44 copr_base 8.4 MiB gtk-update-icon-cache aarch64 3.24.49-3.fc43 fedora 94.1 KiB gtk3 aarch64 3.24.49-3.fc43 fedora 23.7 MiB gtk3-devel aarch64 3.24.49-3.fc43 fedora 34.3 MiB gupnp aarch64 1.6.9-2.fc43 fedora 320.1 KiB gupnp-igd aarch64 1.6.0-7.fc43 fedora 98.8 KiB harfbuzz aarch64 11.4.1-1.fc44 copr_base 2.8 MiB harfbuzz-cairo aarch64 11.4.1-1.fc44 copr_base 68.1 KiB harfbuzz-devel aarch64 11.4.1-1.fc44 copr_base 5.3 MiB harfbuzz-icu aarch64 11.4.1-1.fc44 copr_base 67.3 KiB hicolor-icon-theme noarch 0.18-2.fc43 fedora 72.4 KiB hidapi aarch64 0.15.0-2.fc44 copr_base 179.0 KiB highway aarch64 1.2.0-5.fc42 fedora 4.4 MiB hunspell aarch64 1.7.2-10.fc43 fedora 1.4 MiB hunspell-en-US noarch 0.20201207-12.fc43 fedora 557.4 KiB hunspell-filesystem aarch64 1.7.2-10.fc43 fedora 0.0 B hwdata noarch 0.398-1.fc43 fedora 9.6 MiB hyphen aarch64 2.8.8-27.fc43 fedora 91.6 KiB imath aarch64 3.1.12-4.fc44 copr_base 387.4 KiB inchi-libs aarch64 1.0.6-13.fc43 fedora 1.2 MiB iso-codes noarch 4.18.0-2.fc43 fedora 21.5 MiB jasper-libs aarch64 4.2.3-5.fc44 copr_base 461.7 KiB javascriptcoregtk4.1 aarch64 2.49.4-2.fc43 fedora 29.7 MiB jbig2dec-libs aarch64 0.20-7.fc43 fedora 173.0 KiB jbigkit-libs aarch64 2.1-32.fc43 fedora 181.5 KiB json-glib aarch64 1.10.6-3.fc43 fedora 610.7 KiB jsoncpp aarch64 1.9.6-2.fc44 copr_base 271.5 KiB lame-libs aarch64 3.100-20.fc44 copr_base 1.2 MiB lcms2 aarch64 2.16-6.fc44 copr_base 549.1 KiB 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135.8 KiB libzstd-devel aarch64 1.5.7-2.fc43 fedora 208.0 KiB lm_sensors-libs aarch64 3.6.0-23.fc43 fedora 93.8 KiB lzo aarch64 2.10-15.fc43 fedora 162.9 KiB lzo-devel aarch64 2.10-15.fc43 fedora 212.2 KiB lzo-minilzo aarch64 2.10-15.fc43 fedora 88.7 KiB mesa-dri-drivers aarch64 25.1.4-2.fc43 fedora 34.4 MiB mesa-filesystem aarch64 25.1.4-2.fc43 fedora 3.6 KiB mesa-libEGL aarch64 25.1.4-2.fc43 fedora 394.9 KiB mesa-libGL aarch64 25.1.4-2.fc43 fedora 398.2 KiB mesa-libGLU aarch64 9.0.3-7.fc44 copr_base 460.0 KiB mesa-libGLU-devel aarch64 9.0.3-7.fc44 copr_base 17.0 KiB mesa-libgbm aarch64 25.1.4-2.fc43 fedora 67.8 KiB mpg123-libs aarch64 1.32.10-2.fc44 copr_base 754.3 KiB ncurses aarch64 6.5-7.20250614.fc44 copr_base 892.9 KiB noopenh264 aarch64 2.6.0-2.fc44 copr_base 95.0 KiB openblas aarch64 0.3.29-2.fc43 fedora 111.7 KiB openblas-openmp aarch64 0.3.29-2.fc43 fedora 20.4 MiB openexr-libs aarch64 3.2.4-6.fc44 copr_base 6.5 MiB openjpeg aarch64 2.5.3-8.fc44 copr_base 411.5 KiB opus aarch64 1.5.2-3.fc44 copr_base 520.8 KiB orc aarch64 0.4.41-2.fc44 copr_base 1.5 MiB pango aarch64 1.56.4-2.fc44 copr_base 1.2 MiB pango-devel aarch64 1.56.4-2.fc44 copr_base 1.5 MiB pcre2-devel aarch64 10.45-1.fc44.1 copr_base 2.1 MiB pcre2-utf16 aarch64 10.45-1.fc44.1 copr_base 709.8 KiB pcre2-utf32 aarch64 10.45-1.fc44.1 copr_base 645.6 KiB perl-AutoLoader noarch 5.74-520.fc43 fedora 20.6 KiB perl-AutoSplit noarch 5.74-520.fc43 fedora 23.1 KiB perl-B aarch64 1.89-520.fc43 fedora 545.4 KiB perl-Benchmark noarch 1.27-520.fc43 fedora 36.4 KiB perl-Carp noarch 1.54-520.fc43 fedora 46.6 KiB perl-Class-Struct noarch 0.68-520.fc43 fedora 25.4 KiB perl-Data-Dumper aarch64 2.191-521.fc43 fedora 135.7 KiB perl-Devel-PPPort aarch64 3.73-521.fc43 fedora 917.9 KiB perl-Digest noarch 1.20-520.fc43 fedora 35.3 KiB perl-Digest-MD5 aarch64 2.59-520.fc43 fedora 103.7 KiB perl-DynaLoader aarch64 1.57-520.fc43 fedora 32.1 KiB perl-Encode aarch64 4:3.21-520.fc43 fedora 4.8 MiB perl-Errno aarch64 1.38-520.fc43 fedora 8.4 KiB perl-Exporter noarch 5.79-520.fc43 fedora 54.3 KiB perl-ExtUtils-Command noarch 2:7.76-521.fc43 fedora 9.6 KiB perl-ExtUtils-Constant noarch 0.25-520.fc43 fedora 85.9 KiB perl-ExtUtils-Install noarch 2.22-520.fc43 fedora 85.5 KiB perl-ExtUtils-MakeMaker noarch 2:7.76-521.fc43 fedora 739.7 KiB perl-ExtUtils-Manifest noarch 1:1.75-520.fc43 fedora 84.8 KiB perl-ExtUtils-ParseXS noarch 1:3.58-2.fc43 fedora 539.6 KiB perl-Fcntl aarch64 1.20-520.fc43 fedora 92.8 KiB perl-Fedora-VSP noarch 0.001-37.fc43 fedora 39.7 KiB perl-File-Basename noarch 2.86-520.fc43 fedora 14.0 KiB perl-File-Compare noarch 1.100.800-520.fc43 fedora 5.6 KiB perl-File-Copy noarch 2.41-520.fc43 fedora 19.7 KiB perl-File-Find noarch 1.44-520.fc43 fedora 42.0 KiB perl-File-Path noarch 2.18-520.fc43 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-520.fc43 fedora 162.3 KiB perl-File-stat noarch 1.14-520.fc43 fedora 12.5 KiB perl-FileHandle noarch 2.05-520.fc43 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-520.fc43 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-520.fc43 fedora 11.2 KiB perl-HTTP-Tiny noarch 0.090-521.fc43 fedora 154.4 KiB perl-Hash-Util aarch64 0.32-520.fc43 fedora 99.0 KiB perl-Hash-Util-FieldHash aarch64 1.27-520.fc43 fedora 106.6 KiB perl-IO aarch64 1.55-520.fc43 fedora 191.4 KiB perl-IO-Socket-IP noarch 0.43-521.fc43 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.095-2.fc43 fedora 714.5 KiB perl-IPC-Open3 noarch 1.24-520.fc43 fedora 27.7 KiB perl-MIME-Base32 noarch 1.303-24.fc43 fedora 30.7 KiB perl-MIME-Base64 aarch64 3.16-520.fc43 fedora 94.1 KiB perl-Net-SSLeay aarch64 1.94-11.fc43 fedora 1.4 MiB perl-POSIX aarch64 2.23-520.fc43 fedora 263.5 KiB perl-PathTools aarch64 3.94-520.fc43 fedora 224.0 KiB perl-Pod-Escapes noarch 1:1.07-520.fc43 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-521.fc43 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-3.fc43 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-520.fc43 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-1.fc43 fedora 152.9 KiB perl-SelectSaver noarch 1.02-520.fc43 fedora 2.2 KiB perl-Socket aarch64 4:2.040-2.fc43 fedora 144.3 KiB perl-Storable aarch64 1:3.37-521.fc43 fedora 243.2 KiB perl-Symbol noarch 1.09-520.fc43 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-521.fc43 fedora 97.5 KiB perl-Term-Cap noarch 1.18-520.fc43 fedora 29.3 KiB perl-Test-Harness noarch 1:3.52-4.fc43 fedora 560.8 KiB perl-Text-ParseWords noarch 3.31-520.fc43 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-520.fc43 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-520.fc43 fedora 69.0 KiB perl-URI noarch 5.32-2.fc43 fedora 261.2 KiB perl-base noarch 2.27-520.fc43 fedora 12.6 KiB perl-constant noarch 1.33-521.fc43 fedora 26.2 KiB perl-fields noarch 2.27-520.fc43 fedora 11.9 KiB perl-if noarch 0.61.000-520.fc43 fedora 5.8 KiB perl-interpreter aarch64 4:5.42.0-520.fc43 fedora 174.6 KiB perl-lib aarch64 0.65-520.fc43 fedora 8.5 KiB perl-libnet noarch 3.15-521.fc43 fedora 289.4 KiB perl-libs aarch64 4:5.42.0-520.fc43 fedora 11.6 MiB perl-locale noarch 1.13-520.fc43 fedora 6.1 KiB perl-macros noarch 4:5.42.0-520.fc43 fedora 5.5 KiB perl-mro aarch64 1.29-520.fc43 fedora 81.6 KiB perl-overload noarch 1.40-520.fc43 fedora 71.6 KiB perl-overloading noarch 0.02-520.fc43 fedora 4.9 KiB perl-parent noarch 1:0.244-520.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-520.fc43 fedora 317.5 KiB perl-vars noarch 1.05-520.fc43 fedora 3.9 KiB perl-version aarch64 9:0.99.33-521.fc43 fedora 160.8 KiB pixman aarch64 0.46.2-2.fc44 copr_base 719.0 KiB pixman-devel aarch64 0.46.2-2.fc44 copr_base 56.1 KiB pulseaudio-libs aarch64 17.0-7.fc44 copr_base 3.6 MiB pyproject-rpm-macros noarch 1.18.3-2.fc43 fedora 114.5 KiB python-rpm-macros noarch 3.14-5.fc43 fedora 23.2 KiB python3-numpy aarch64 1:2.3.2-2.fc44 fedora 35.2 MiB python3-numpy-f2py aarch64 1:2.3.2-2.fc44 fedora 2.1 MiB python3-packaging noarch 25.0-5.fc44 fedora 607.4 KiB python3-pyparsing noarch 3.1.2-13.fc44 fedora 1.0 MiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-5.fc43 fedora 6.5 KiB rav1e-libs aarch64 0.7.1-8.fc43 fedora 2.0 MiB rhash aarch64 1.4.5-3.fc43 fedora 394.8 KiB rsvg-pixbuf-loader aarch64 2.60.0-4.fc43 fedora 340.1 KiB ruby aarch64 3.4.5-27.fc44 fedora 141.4 KiB ruby-default-gems noarch 3.4.5-27.fc44 fedora 65.9 KiB ruby-libs aarch64 3.4.5-27.fc44 fedora 18.8 MiB rubygem-io-console aarch64 0.8.1-27.fc44 fedora 69.2 KiB rubygem-psych aarch64 5.2.2-27.fc44 fedora 168.6 KiB rubygems noarch 3.6.9-27.fc44 fedora 1.4 MiB rubypick noarch 1.1.1-23.fc43 fedora 4.4 KiB sdl2-compat aarch64 2.32.56-2.fc44 copr_base 611.5 KiB shared-mime-info aarch64 2.4-2.fc43 fedora 5.3 MiB spirv-tools-libs aarch64 2025.3-4.fc43 fedora 5.3 MiB svt-av1-libs aarch64 2.3.0-2.fc44 copr_base 3.5 MiB sysprof-capture-devel aarch64 49~alpha-2.fc43 fedora 766.2 KiB systemd-devel aarch64 257.7-1.fc43 fedora 600.4 KiB systemd-rpm-macros noarch 257.7-1.fc43 fedora 8.5 KiB systemtap-sdt-devel aarch64 5.3-4.fc44 fedora 182.9 KiB systemtap-sdt-dtrace aarch64 5.3-4.fc44 fedora 179.6 KiB urw-base35-bookman-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-26.fc43 fedora 84.3 KiB urw-base35-fonts noarch 20200910-26.fc43 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-26.fc43 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-26.fc43 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-26.fc43 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-26.fc43 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-26.fc43 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-26.fc43 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-26.fc43 fedora 390.8 KiB vim-filesystem noarch 2:9.1.1623-1.fc43 fedora 40.0 B vulkan-loader aarch64 1.4.321.0-3.fc44 copr_base 548.1 KiB wayland-devel aarch64 1.24.0-1.fc44 copr_base 711.8 KiB webkit2gtk4.1 aarch64 2.49.4-2.fc43 fedora 87.2 MiB woff2 aarch64 1.0.2-23.fc43 fedora 205.2 KiB wxBase aarch64 3.2.8-2.fc43 fedora 2.9 MiB wxBase-devel aarch64 3.2.8-2.fc43 fedora 6.7 MiB wxGTK aarch64 3.2.8-2.fc43 fedora 15.9 MiB wxGTK-gl aarch64 3.2.8-2.fc43 fedora 134.6 KiB wxGTK-i18n noarch 3.2.8-2.fc43 fedora 5.7 MiB wxGTK-media aarch64 3.2.8-2.fc43 fedora 134.2 KiB wxGTK-webview aarch64 3.2.8-2.fc43 fedora 267.4 KiB xdg-dbus-proxy aarch64 0.1.6-3.fc44 copr_base 98.5 KiB xkeyboard-config noarch 2.45-1.fc43 fedora 10.2 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc44 copr_base 1.7 MiB xprop aarch64 1.2.8-4.fc44 copr_base 78.6 KiB xz-devel aarch64 1:5.8.1-2.fc44 copr_base 258.8 KiB zlib-ng-compat-devel aarch64 2.2.5-1.fc44 copr_base 107.0 KiB Transaction Summary: Installing: 434 packages Replacing: 10 packages Downgrading: 10 packages Total size of inbound packages is 336 MiB. Need to download 336 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 442 MiB). 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Running transaction [ 1/456] Verify package files 100% | 398.0 B/s | 444.0 B | 00m01s >>> Running %pretrans scriptlet: xkeyboard-config-0:2.45-1.fc43.noarch >>> Finished %pretrans scriptlet: xkeyboard-config-0:2.45-1.fc43.noarch >>> [RPM] /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root/var/cache/ [ 2/456] Prepare transaction 100% | 1.3 KiB/s | 454.0 B | 00m00s [ 3/456] Installing glib2-0:2.85.3-2.f 100% | 217.6 MiB/s | 15.4 MiB | 00m00s [ 4/456] Installing xorg-x11-proto-dev 100% | 162.1 MiB/s | 1.8 MiB | 00m00s [ 5/456] Installing libjpeg-turbo-0:3. 100% | 241.1 MiB/s | 740.7 KiB | 00m00s [ 6/456] Installing libwayland-client- 100% | 69.7 MiB/s | 71.4 KiB | 00m00s [ 7/456] Installing libpng-2:1.6.50-2. 100% | 132.6 MiB/s | 271.5 KiB | 00m00s [ 8/456] Installing libicu-0:77.1-1.fc 100% | 335.2 MiB/s | 36.5 MiB | 00m00s [ 9/456] Installing cmake-filesystem-0 100% | 3.7 MiB/s | 7.6 KiB | 00m00s [ 10/456] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.5 KiB | 00m00s [ 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00m01s Warning: skipped OpenPGP checks for 106 packages from repository: copr_base Complete! Finish: build setup for openbabel-3.1.1-39.fc44.src.rpm Start: rpmbuild openbabel-3.1.1-39.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1755216000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.tBhsWl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ijILub + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd /builddir/build/BUILD/openbabel-3.1.1-build + rm -rf openbabel-openbabel-3-1-1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-1-1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-1-1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (openbabel-perl.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 Patch #0 (openbabel-perl.patch): patching file scripts/CMakeLists.txt Hunk #1 succeeded at 367 (offset 31 lines). + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 Patch #1 (openbabel-plugindir.patch): patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in + echo 'Patch #2 (openbabel-noswig-rubymethod.patch):' Patch #2 (openbabel-noswig-rubymethod.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .noswig_ruby --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 416 (offset 42 lines). Patch #3 (openbabel-ruby19-vendorarch.patch): + echo 'Patch #3 (openbabel-ruby19-vendorarch.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .ruby_vendor --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 447 (offset 47 lines). Patch #4 (openbabel-disable-tests.patch): + echo 'Patch #4 (openbabel-disable-tests.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .tests --fuzz=0 patching file test/CMakeLists.txt + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .s390x --fuzz=0 Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): patching file openbabel-3.pc.cmake + echo 'Patch #7 (openbabel-3.1.1-fix_bug2223.patch):' Patch #7 (openbabel-3.1.1-fix_bug2223.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file src/forcefields/forcefielduff.cpp + echo 'Patch #8 (openbabel-3.1.1-fix_bug2217.patch):' Patch #8 (openbabel-3.1.1-fix_bug2217.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file test/testdistgeom.py + echo 'Patch #9 (openbabel-3.1.1-bug2378.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 Patch #9 (openbabel-3.1.1-bug2378.patch): patching file scripts/CMakeLists.txt Hunk #1 succeeded at 102 (offset -4 lines). + echo 'Patch #10 (openbabel-3.1.1-bug2493.patch):' Patch #10 (openbabel-3.1.1-bug2493.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file src/config.h.cmake + echo 'Patch #12 (2784.patch):' Patch #12 (2784.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file CMakeLists.txt patching file doc/examples/static_executable/CMakeLists.txt patching file scripts/CMakeLists.txt patching file test/CMakeLists.txt Hunk #1 succeeded at 150 (offset 1 line). + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + convert src/GUI/babel.xpm -transparent white babel.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + pushd doc ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html + '[' -f roundtrip.html ']' + popd ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dk6DvT + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DLIB_SUFFIX=64 -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG=true -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -- The C compiler identification is Clang 20.1.8 -- The CXX compiler identification is Clang 20.1.8 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.10") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.8") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found PythonInterp: /usr/bin/python3 (found version "3.14") -- Found SWIG: /usr/bin/swig (found version "4.3.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.3.1", minimum required is "2.0") -- Found PythonLibs: /usr/lib64/libpython3.14.so (found version "3.14.0rc2") -- Python bindings will be compiled -- Found Perl: /usr/bin/perl (found version "5.42.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.42.0") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found suitable version "3.4.5", minimum required is "1.8.0") -- Ruby bindings will be compiled -- Configuring done (6.2s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 -B/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/CMakeFiles /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src 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/usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/atom.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/base.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables 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/usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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-flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/bondtyper.cpp [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/canon.cpp 1 warning generated. [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF CMakeFiles/openbabel.dir/chains.cpp.o.d -o CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/chains.cpp 1 warning generated. [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/chargemodel.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/data.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp:1082:31: warning: unused variable 'l' [-Wunused-variable] 1082 | vector::iterator l; | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/data.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/data.h:189:30: warning: private field '_nrows' is not used [-Wunused-private-field] 189 | unsigned int _ncols,_nrows; | ^ [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/data_utilities.cpp 1 warning generated. [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptor.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF CMakeFiles/openbabel.dir/elements.cpp.o.d -o CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/elements.cpp 1 warning generated. [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprint.cpp 2 warnings generated. [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/format.cpp [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprint.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/format.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:123:10: warning: 'OpenBabel::OBFloatGrid::Init' hides overloaded virtual function [-Woverloaded-virtual] 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:55:18: note: hidden overloaded virtual function 'OpenBabel::OBGrid::Init' declared here: different number of parameters (1 vs 3) 55 | virtual void Init(OBMol &box); | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ 1 warning generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1353:33: warning: [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o array subscript is of type 'char' [-Wchar-subscripts] cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/graphsym.cpp 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1291:9: warning: unused variable 'origLogLevel' [-Wunused-variable] 1291 | int origLogLevel = _loglvl; | ^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1327:12: warning: variable 'energy_offset' set but not used [-Wunused-but-set-variable] 1327 | double energy_offset; | ^ 1 warning generated. [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:123:10: warning: 'OpenBabel::OBFloatGrid::Init' hides overloaded virtual function [-Woverloaded-virtual] 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:55:18: note: hidden overloaded virtual function 'OpenBabel::OBGrid::Init' declared here: different number of parameters (1 vs 3) 55 | virtual void Init(OBMol &box); | ^ 1 warning generated. [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:123:10: warning: 'OpenBabel::OBFloatGrid::Init' hides overloaded virtual function [-Woverloaded-virtual] 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:55:18: note: hidden overloaded virtual function 'OpenBabel::OBGrid::Init' declared here: different number of parameters (1 vs 3) 55 | virtual void Init(OBMol &box); | ^ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/isomorphism.cpp 3 warnings generated. [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/kekulize.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/locale.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/kekulize.cpp:94:15: warning: unused variable 'nbr' [-Wunused-variable] 94 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/matrix.cpp 1 warning generated. [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp 7 warnings generated. [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/molchrg.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mol.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:2965:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 2965 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:3002:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 3002 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4399:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4399 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5036:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] 5036 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5660:9: warning: variable 'naStore' set but not used [-Wunused-but-set-variable] 5660 | int naStore; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5924:9: warning: variable 'qq' set but not used [-Wunused-but-set-variable] 5924 | int qq=0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:6684:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6684 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:48: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:164:13: warning: unused variable 'lightMetals' [-Wunused-const-variable] 164 | const int lightMetals[NLIGHT_METALS] = { | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:166:13: warning: unused variable 'heavyMetals' [-Wunused-const-variable] 166 | const int heavyMetals[NHEAVY_METALS] = { | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:53: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstream.h:333: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:242:44: warning: variable 'total_written_byte_size' set but not used [-Wunused-but-set-variable] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF CMakeFiles/openbabel.dir/oberror.cpp.o.d -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/oberror.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:179:9: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; pointer may be assumed to always convert to true [-Wundefined-bool-conversion] 179 | if(&_ostream) | ~~ ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:86:5: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::flush' requested here 86 | flush(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:620:35: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::~basic_zip_streambuf' requested here 620 | basic_zip_ostream::basic_zip_ostream(ostream_reference ostream, | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:398:46: note: in instantiation of member function 'zlib_stream::basic_zip_ostream::basic_zip_ostream' requested here 398 | zlib_stream::zip_ostream *zOut = new zlib_stream::zip_ostream(*pOutput, true); | ^ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obfunctions.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obiter.cpp 3 warnings generated. [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obutil.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/op.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/op.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/parsmart.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/patty.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 446 | int index,size; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 478 | int index,size; | ^ [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/phmodel.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/plugin.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/plugin.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/pointgroup.cpp 1 warning generated. [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/query.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/query.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ 2 warnings generated. [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/reactionfacade.cpp 1 warning generated. 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[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotor.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:412:10: warning: misleading indentation; statement is not part of the previous 'while' [-Wmisleading-indentation] 412 | while (angle > 360.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:410:11: note: previous statement is here 410 | while (angle < 0.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:545:10: warning: misleading indentation; statement is not part of the previous 'while' [-Wmisleading-indentation] 545 | while (angle > 360.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:543:11: note: previous statement is here 543 | while (angle < 0.0) | ^ 17 warnings generated. [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/spectrophore.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:93:14: warning: unused variable 'SwabInt' [-Wunused-const-variable] 93 | const bool SwabInt = (STPTR[0]!=0); | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp:406:13: warning: variable 'numSingleBond' set but not used [-Wunused-but-set-variable] 406 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^ 3 warnings generated. [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tokenst.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/transform.cpp 2 warnings generated. [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/typer.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/transform.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ 1 warning generated. [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:352:23: warning: unused variable 'end_it' [-Wunused-variable] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:924:35: warning: unused variable 'dit' [-Wunused-variable] 924 | std::vector::iterator dit; | ^~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:977:10: warning: unused variable 'flag_niched' [-Wunused-variable] 977 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1106:23: warning: unused variable 'lowest' [-Wunused-variable] 1106 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1106:37: warning: unused variable 'highest' [-Wunused-variable] 1106 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1107:32: warning: unused variable 'nit' [-Wunused-variable] 1107 | std::vector::iterator nit; | ^~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1108:35: warning: unused variable 'dit' [-Wunused-variable] 1108 | std::vector::iterator dit; | ^~~ 3 warnings generated. [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/dlhandler_unix.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:134:59: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:444:70: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:38: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1024:21: warning: unused variable 'metrics' [-Wunused-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1029:21: warning: unused variable 'metrics' [-Wunused-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~ ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1238:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:54:9: warning: unknown pragma ignored [-Wunknown-pragmas] 54 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:55:9: warning: unknown pragma ignored [-Wunknown-pragmas] 55 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:435:14: warning: variable 'angle' set but not used [-Wunused-but-set-variable] 435 | double angle = 180.0 - (360.0 / size); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ 9 warnings generated. [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:8: warning: initializer order does not match the declaration order [-Wreorder-ctor] 37 | m_Pencolor("black"), m_Fillcolor("white"), m_Gradientcolor(make_pair(OBColor("white"),OBColor("white"))), m_PenWidth(1), | ~~~~~~~~~~~~~ | m_Gradients(gradients) 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~ | m_isFillcolor(true) m_PenWidth(1) m_fontPointSize(16) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:8: note: field 'm_fontPointSize' will be initialized after field 'm_isFillcolor' 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:29: note: field 'm_isFillcolor' will be initialized after field 'm_Gradients' 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ 4 warnings generated. 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-Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/facade.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2951:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 2951 | return true; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2795:5: note: previous statement is here 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:80: warning: 'bind1st, unsigned long>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:134:5: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:16: warning: 'binder1st>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:130:7: note: 'binder1st>' has been explicitly marked deprecated here 130 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::bind"); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:85: warning: 'bind1st, unsigned long>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:134:5: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:16: warning: 'binder1st>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:130:7: note: 'binder1st>' has been explicitly marked deprecated here 130 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::bind"); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/gen3dstereohelper.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/gen3dstereohelper.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. 1 warning generated. 10 warnings generated. 5 warnings generated. [ 14%] Linking CXX shared library ../lib64/libopenbabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/openbabel.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -Wl,-soname,libopenbabel.so.7 -o ../lib64/libopenbabel.so.7.0.0 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CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl /usr/lib64/libz.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.7.0.0 ../lib64/libopenbabel.so.7 ../lib64/libopenbabel.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 14%] Built target openbabel /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend gmake[2]: Entering directory 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Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build /usr/bin/gmake -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build /usr/bin/gmake -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger2.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cansmidescriptor.cpp [ 15%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.cpp [ 15%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addfilename.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addfilename.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deIn file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cansmidescriptor.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ precated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger2.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.h:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cmpdfilter.cpp 1 warning generated. [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addinindex.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cmpdfilter.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addinindex.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 16%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/groupcontrib.cpp 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addpolarh.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX1In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/groupcontrib.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/groupcontrib.h:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp:258:34: warning: unsequenced modification and access to 'div' [-Wunsequenced] 258 | ngrp = (num + div -1)/div--; //rounds up | ~~~ ^ 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addnonpolarh.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addnonpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. [ 17%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/filters.cpp 1 warning generated. [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/filters.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/canonical.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp:64:8: warning: private field '_keepdups' is not used [-Wunused-private-field] 64 | bool _keepdups; | ^ 1 warning generated. [ 18%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.cpp 1 warning generated. [ 18%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp 1 warning generated. [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/changecell.cpp 2 warnings generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.h:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 18%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:In file included from 32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/changecell.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning 4 warnings generated. [ 18%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/smartsdescriptors.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/plugin_fingerprints.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 18%] Built target plugin_fingerprints [ 18%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/smartsdescriptors.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delpolarh.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:4660:29: warning: unused variable 'rj' [-Wunused-variable] 4660 | vector::iterator rj; | ^~ 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 19%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 1 warning generated. [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delnonpolarh.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/plugin_descriptors.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 19%] Built target plugin_descriptors [ 19%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delnonpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen2D.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.h:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen2D.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eem.cpp 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eem.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^[ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/fillUC.cpp 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/fillUC.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/gasteiger.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp 1 warning generated. [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/none.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable] 265 | bool done = true; | ^~~~ 1 warning generated. 2 warnings generated. [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/mmff94.cpp /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 20%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp 4 warnings generated. [ 20%] Linking CXX shared module ../lib64/plugin_forcefields.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 2In file included from warnings generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/mmff94.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen3d.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:318:54: warning: field '_preserve_aromaticity' will be initialized after field '_rxnrole' [-Wreorder-ctor] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ | _rxnrole(1) _preserve_aromaticity(preserve_aromaticity) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 655 | OBAtom* atom; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable] 2689 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable] 2690 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable] 3139 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable] 3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable] 3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen3d.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:4313:27: warning: unused variable 'i' [-Wunused-variable] 4313 | vector::iterator i; | ^ 1 warning generated. [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/fromfile.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/fromfile.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/fromfile.cpp:114:30: warning: object backing the pointer name will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); | ^~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/largest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/largest.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/plugin_forcefields.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 21%] Built target plugin_forcefields [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | In file included from ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.hCharP:141trL:7: esnote: 'binary_function' has been explicitly marked deprecated here s : public std:141:b | inar y } _GL_IfBCXX11_uDnctioEPnREC | ^ 119 | /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h#: 141d:e7fi:n enote: 'binary_function' has been explicitly marked deprecated here_ GLIBCXX1 1141_ | D E P R E} C_AGTLEIDB C_XGXL1I1B_CDXEX_PDREPERECCAATETD E | D ^; | ^/usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h :110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: 110note: | expanded from macro '_GLIBCXX11_DEPRECATED'# define _GLIBCX X119_D | E#PR EdCAeTfEDi n__ea tt_rGiLbuItBe_C_X (X(1__1d_epDrEecPRatEeCd_A_T))E D | ^_ GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:148:15: warning: private field '_filename' is not used [-Wunused-private-field] 148 | const char* _filename; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:149:15: warning: private field '_descr' is not used [-Wunused-private-field] 149 | const char* _descr; | ^ 3 warnings generated. [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/neutralize.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/neutralize.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:95:5: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 95 | if(pConv->IsFirstInput()) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:92:3: note: previous statement is here 92 | if(!pConv) | ^ 9 warnings generated. [ 22%] Linking CXX shared module ../../lib64/smilesformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 2 warnings generated. [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/optransform.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/optransform.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/partialcharges.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/smilesformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 23%] Built target smilesformat [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.cpp 1 warning generated. [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/readconformers.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/readconformers.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:32:28: warning: 'binary_function, std::pair, bool>' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:121:44: note: in instantiation of template class 'OpenBabel::Order' requested here 121 | std::sort(valvec.begin(),valvec.end(), Order(_pDesc, _rev)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function, std::pair, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:32:28: warning: 'binary_function>, std::pair>, bool>' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:152:44: note: in instantiation of template class 'OpenBabel::Order>' requested here 152 | std::sort(valvec.begin(),valvec.end(), Order(_pDesc, _rev)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function>, std::pair>, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.h:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 23%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:774:20: warning: variable 'count' set but not used [-Wunused-but-set-variable] 774 | unsigned int count = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1488 | bool chiralWatch=false; | ^~~~~~~~~~~ 1 warning generated. [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/ophighlight.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/xout.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/xout.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/conformer.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. 1 warning generated. [ 24%] Linking CXX shared module ../../lib64/mdlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opalign.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 24%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable] 785 | char ch = ifs.peek(); | ^~ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mdlformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 24%] Built target mdlformat [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opconfab.cpp 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 25%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:86:15: warning: unused function 'IsThiocarboxylSulfur' [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opconfab.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. [ 25%] Linking CXX shared module ../../lib64/mol2format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 1 warning generated. [ 26%] Linking CXX shared module ../lib64/plugin_ops.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mol2format.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 26%] Built target mol2format /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 26%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/plugin_ops.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 26%] Built target plugin_ops /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 27%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/asciiformat.cpp 1 warning generated. [ 27%] Linking CXX shared module ../../lib64/pdbformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/asciiformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 27%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/asciipainter.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pdbformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 27%] Built target pdbformat [ 28%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp:166:22: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] 166 | while((ch=is.get())!=EOF) | ~~~~~~~~~~~~~^ ~~~ 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' 1 warning generated. [ 29%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcopyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/copyformat.cpp [ 29%] Linking CXX shared module ../lib64/plugin_charges.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 [ 29%] Linking CXX shared module ../../lib64/asciiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 4 warnings generated. [ 29%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/copyformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/asciiformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 29%] Built target asciiformat /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 29%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MNAformat.cpp 1 warning generated. [ 29%] Linking CXX shared module ../../lib64/copyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/copyformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MNAformat.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 29%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molreport.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molreport.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 4 warnings generated. [ 29%] Linking CXX shared module ../../lib64/inchiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 1 warning generated. [ 29%] Linking CXX shared module ../../lib64/molreport.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 1 warning generated. [ 29%] Linking CXX shared module ../../lib64/MNAformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/molreport.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 29%] Built target molreport /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 30%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nulformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/MNAformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 30%] Built target MNAformat /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 31%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/inchiformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 31%] Built target inchiformat [ 31%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/commandpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nulformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 31%] Linking CXX shared module ../../lib64/nulformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp:114:12: warning: unused variable 'ofs' [-Wunused-variable] 114 | ostream& ofs = *pConv->GetOutStream(); | ^~~ /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/nulformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Built target nulformat /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/reportformat.cpp 2 warnings generated. [ 32%] Linking CXX shared module ../../lib64/painterformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/reportformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/painterformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Built target painterformat /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:173:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:526:71: warning: 'bind1st, char>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:134:5: note: 'bind1st, char>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:587:71: warning: 'bind1st, char>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:134:5: note: 'bind1st, char>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:807:17: warning: unused variable 'title' [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/plugin_charges.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Built target plugin_charges /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/textformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:248:18: warning: unused variable 'n' [-Wunused-variable] 248 | unsigned int n=0; 1 warning generated. | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:273:8: warning: unused variable 'ret' [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [ 32%] Linking CXX shared module ../../lib64/reportformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/textformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 5 warnings generated. [ 32%] Linking CXX shared module ../../lib64/povrayformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:172:21: warning: private field '_textpos' is not used [-Wunused-private-field] 172 | string::size_type _textpos; | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/reportformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 32%] Built target reportformat /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/titleformat.cpp 1 warning generated. [ 34%] Linking CXX shared module ../../lib64/textformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/textformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Built target textformat /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/confabreport.cpp 4 warnings generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/titleformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 34%] Linking CXX shared module ../../lib64/svgformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/povrayformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Built target povrayformat /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pngformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/confabreport.cpp:34: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 34%] Linking CXX shared module ../../lib64/titleformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/svgformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Built target svgformat /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pngformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/titleformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Built target titleformat /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 34%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acesformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 35%] Linking CXX shared module ../../lib64/pngformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:171:15: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 171 | column = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:164:13: note: previous statement is here 164 | if (vs.size() < 3) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pngformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 35%] Built target pngformat /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 35%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 2 warnings generated. [ 35%] Linking CXX shared module ../../lib64/abinitformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 1 warning generated. [ 35%] Linking CXX shared module ../../lib64/acesformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/confabreport.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 35%] Built target confabreport /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd 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35%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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/usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/aoforceformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/castepformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crystal09format.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. [ 35%] Linking CXX shared module ../../lib64/adfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 1 warning generated. [ 36%] Linking CXX shared module ../../lib64/castepformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 1 warning generated. [ 36%] Linking CXX shared module ../../lib64/aoforceformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/castepformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 36%] Built target castepformat /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build 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-D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/aoforceformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 36%] Built target aoforceformat /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 36%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dmolformat.cpp 1 warning generated. [ 37%] Linking CXX shared module ../../lib64/crystal09format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard 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Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dmolformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp:148:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 148 | int atomcount = 0; // for each atom type | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/crystal09format.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 38%] Built target crystal09format /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 38%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhiaimsformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:668:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:671:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | 2 warnings generated. bind2nd(greater(), MxBond)) || | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIB[ 38%] Linking CXX shared module ../../lib64/daltonformat.so CXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19:cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:674:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:677:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. [ 38%] Linking CXX shared module ../../lib64/dmolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhiaimsformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/daltonformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 38%] Built target daltonformat /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 38%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/dmolformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 38%] Built target dmolformat /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^ 1 warning generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp:339:17: warning: [ 39%] Linking CXX shared module ../../lib64/fhiaimsformat.so unused variable 'pg' [-Wunused-variable] 339 | const char *pg = obPG.cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 IdentifyPointGroup(); | ^~ 5 warnings generated. [ 39%] Linking CXX shared module ../../lib64/fchkformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fhiaimsformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 39%] Built target fhiaimsformat /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fchkformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 39%] Built target fchkformat /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausszmatformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:114:17: warning: unused variable 'title' [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausszmatformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 4 warnings generated. [ 39%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 1 warning generated. [ 39%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 2 warnings generated. [ 40%] Linking CXX shared module ../../lib64/gamessformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gausscubeformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' 2 warnings generated. [ 40%] Built target gausscubeformat /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" [ 40%] Linking CXX shared module ../../lib64/gaussformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgulpformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gulpformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gausszmatformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Built target gausszmatformat /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dhinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/hinformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gulpformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/hinformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 41%] Linking CXX shared module ../../lib64/hinformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/hinformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Built target hinformat /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Djaguarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/jaguarformat.cpp 1 warning generated. [ 41%] Linking CXX shared module ../../lib64/gulpformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gamessformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Built target gamessformat /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolproformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molproformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/jaguarformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gaussformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 41%] Built target gaussformat /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gulpformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build [ 41%] Built target gulpformat /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" [ 42%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmopacformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 42%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnwchemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molproformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7In file included from : note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp:650:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] 650 | double x,y,z, isotopeMass; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 310 | else if (vs[0][0] == '2') | ^ 1 warning generated. [ 42%] Linking CXX shared module ../../lib64/jaguarformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:111:20: warning: unused variable 'BETA_ORBITAL_PATTERN' [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/jaguarformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 42%] Built target jaguarformat /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 42%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpwscfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pwscfformat.cpp 1 warning generated. [ 42%] Linking CXX shared module ../../lib64/molproformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pwscfformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/molproformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 42%] Built target molproformat /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 42%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dqchemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/qchemformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/qchemformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_fun2 warnings generated. ction | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 42%] Linking CXX shared module ../../lib64/mopacformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 1 warning generated. [ 43%] Linking CXX shared module ../../lib64/pwscfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 3 warnings generated. [ 43%] Linking CXX shared module ../../lib64/nwchemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pwscfformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 43%] Built target pwscfformat /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsiestaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mopacformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Built target mopacformat /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/turbomoleformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/nwchemformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:92:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 92 | bool coordsAreAngstrom = false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:98:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 98 | size_t size; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:102:30: warning: unused variable 'numSpecies' [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ [ 44%] Built target nwchemformat /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dvaspformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp 1 warning generated. [ 44%] Linking CXX shared module ../../lib64/qchemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/turbomoleformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/qchemformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Built target qchemformat /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxsfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xsfformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:451:17: warning: unused variable 'freqnum' [-Wunused-variable] 451 | 1 warning generated. int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:535:28: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | [ 44%] Linking CXX shared module ../../lib64/turbomoleformat.so ^ cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:589:29: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 4 warnings generated. [ 44%] Linking CXX shared module ../../lib64/siestaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/turbomoleformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Built target turbomoleformat /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xsfformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binargmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' y_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCX/usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build X11_DEPRECATEgmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' D _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 44%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dzindoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/zindoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/zindoformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/siestaformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Built target siestaformat /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 44%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessukformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp 1 warning generated. [ 44%] Linking CXX shared module ../../lib64/xsfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 1 warning generated. [ 45%] Linking CXX shared module ../../lib64/zindoformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/xsfformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Built target xsfformat /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/zindoformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Built target zindoformat /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend [ 45%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dorcaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:753:36: warning: expression result unused [-Wunused-value] 753 | gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' ifs.getline(buffer, /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build BUFF_SIZE) gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' && ifs.getline(buffer, BUFF_SIZE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:787:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 787 | bool ok=false; [ 45%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:793:38:cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/APIInterface.cpp warning: expression result unused [-Wunused-value] 792 | ifs.getline(buffer, BUFF_SIZE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 | ifs.getline(buffer, BUFF_SIZE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ 794 | ifs.getline(buffer, BUFF_SIZE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:853:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 853 | bool ok=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:868:38: warning: expression result unused [-Wunused-value] 868 | ifs.getline(buffer, BUFF_SIZE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ 869 | ifs.getline(buffer, BUFF_SIZE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:900:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 900 | bool ok=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:1215:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1215 | bool ok; | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/APIInterface.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 45%] Linking CXX shared module ../../lib64/APIInterface.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:131:12: warning: unused variable 'energy' [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:138:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 138 | int nModeAll = 0; | ^ 4 warnings generated. /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/APIInterface.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Built target APIInterface /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" [ 45%] Linking CXX shared module ../../lib64/vaspformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/CSRformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/CSRformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 45%] Linking CXX shared module ../../lib64/CSRformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 8 warnings generated. [ 45%] Linking CXX shared module ../../lib64/gamessukformat.so /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/CSRformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Built target CSRformat /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/PQSformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/vaspformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 45%] Built target vaspformat /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 46%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/PQSformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:287:13: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 287 | nt = 1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:283:9: note: previous statement is here 283 | if (jflag) | ^ 3 warnings generated. [ 46%] Linking CXX shared module ../../lib64/orcaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 1 warning generated. [ 47%] Linking CXX shared module ../../lib64/PQSformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gamessukformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 47%] Built target gamessukformat /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 47%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dalchemyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/alchemyformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/PQSformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 47%] Built target PQSformat /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 48%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/alchemyformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acrformat.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 49%] Linking CXX shared module ../../lib64/alchemyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 1 warning generated. [ 49%] Linking CXX shared module ../../lib64/acrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/alchemyformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 49%] Built target alchemyformat /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Damberformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/amberformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/orcaformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 49%] Built target orcaformat /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 49%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbalstformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/balstformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/acrformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 49%] Built target acrformat /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbgfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/bgfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/amberformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/balstformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/bgfformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 50%] Linking CXX shared module ../../lib64/amberformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 1 warning generated. [ 50%] Linking CXX shared module ../../lib64/balstformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/amberformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Built target amberformat /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dboxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/boxformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/balstformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Built target balstformat /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacaoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacaoformat.cpp 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/boxformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_[ 50%] Linking CXX shared module ../../lib64/bgfformat.so DEPRECATEcd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 D; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacaoformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/bgfformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 50%] Built target bgfformat /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacheformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacheformat.cpp 2 warnings generated. [ 51%] Linking CXX shared module ../../lib64/MCDLformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/boxformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacheformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/boxformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target boxformat /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/carformat.cpp 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/cacaoformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/cacheformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/carformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OB/usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cacaoformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so ERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target cacaoformat /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcccformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cccformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cacheformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target cacheformat /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchem3dformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chem3dformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cccformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chem3dformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/carformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/cccformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/carformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target carformat /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats 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-I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawct.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cccformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target cccformat /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend 1 warning generated. gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats 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-DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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-flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target chem3dformat /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawct.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_fungmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build ction | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32[ 51%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o : note: expanded from macro '_GLIBCXX11_DEPRECATED' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcifformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemtoolformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/chemdrawct.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/chemtoolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/chemdrawct.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/MCDLformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target chemdrawct /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend [ 51%] Built target MCDLformat gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/chemtoolformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target chemtoolformat /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend [ 51%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crkformat.cpp [ 51%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcofformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:1693:15: warning: unused label 'std' [-Wunused-label] 1693 | std:vector uc; | ^~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcssrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o -MF CMakeFiles/cssrformat.dir/cssrformat.cpp.o.d -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cssrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crkformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std:In file included from :binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cssrformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp:410:9: warning: unused variable 'nbonds' [-Wunused-variable] 410 | int nbonds = mol.NumBonds(); | ^~~~~~ 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/crkformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 1 warning generated. [ 51%] Linking CXX shared module ../../lib64/cssrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cssrformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 51%] Built target cssrformat /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/crkformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 52%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp [ 52%] Built target crkformat /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 52%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dexyzformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp 2 warnings generated. [ 52%] Linking CXX shared module ../../lib64/cofformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp:152:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 152 | bool ok; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp:124:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 124 | bool unitCell,virtualAtoms; | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 52%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastsearchformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastsearchformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. [ 53%] Linking CXX shared module ../../lib64/exyzformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 2 warnings generated. [ 53%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/exyzformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Built target exyzformat /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfastaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastaformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/dlpolyformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' 1 warning generated. [ 53%] Built target dlpolyformat In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastaformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : pub/usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend lic std::bgmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" inary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 : note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfeatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/featformat.cpp 6 warnings generated. [ 53%] Linking CXX shared module ../../lib64/cifformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/featformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fastsearchformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Built target fastsearchformat /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhformat.cpp 1 warning generated. [ 53%] Linking CXX shared module ../../lib64/fastaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 1 warning generated. [ 53%] Linking CXX shared module ../../lib64/featformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' 141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 53%] Built target featformat /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fingerprintformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fastaformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 53%] Built target fastaformat /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 54%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfpsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp 1 warning generated. [ 55%] Linking CXX shared module ../../lib64/fhformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fingerprintformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fhformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Built target fhformat /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfreefracformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/freefracformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp:175:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 175 | size_t time_res; /* Result of strftime */ | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/freefracformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBE1 warning generated. RROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX[ 55%] Linking CXX shared module ../../lib64/fingerprintformat.so _DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 2 warnings generated. [ 55%] Linking CXX shared module ../../lib64/fpsformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cifformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Built target cifformat /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dghemicalformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/ghemicalformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fingerprintformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Built target fingerprintformat /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgromos96format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gromos96format.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/fpsformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Built target fpsformat /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgroformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/groformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/ghemicalformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gromos96format.cpp:54: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 55%] Linking CXX shared module ../../lib64/freefracformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/groformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/freefracformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 55%] Built target freefracformat /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 56%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp 1 warning generated. [ 56%] Linking CXX shared module ../../lib64/gromos96format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/gromos96format.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 56%] Built target gromos96format /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 56%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlpmdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:[ 57%] Linking CXX shared module ../../lib64/ghemicalformat.so 141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:277:13: warning: unused variable 'length' [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:367:11: warning: unused variable 'atomid' [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:368:14: warning: unused variable 'charge' [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/ghemicalformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 57%] Built target ghemicalformat /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 57%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdffformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 57%] Linking CXX shared module ../../lib64/groformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:11: warning: unused variable 'FX' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:32: warning: unused variable 'FY' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:53: warning: unused variable 'FZ' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/groformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 57%] Built target groformat /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 57%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmcifformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmcifformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:125:18: warning: variable 'totalAtoms' set but not used [-Wunused-but-set-variable] 125 | unsigned int totalAtoms = 0, atomCount = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:136:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] 136 | string path = (found == string::npos) ? "" : path.substr(0, found); | ~~~~ ^~~~ 4 warnings generated. [ 57%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmcifformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/lmpdatformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 57%] Built target lmpdatformat /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 58%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmodformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp 4 warnings generated. [ 58%] Linking CXX shared module ../../lib64/lpmdformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: warning: variable 'natoms' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:98:13: note: uninitialized use occurs here 98 | if (natoms == 0) | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:9: note: remove the 'if' if its condition is always true 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | sscanf(buffer,"%i%*s",&natoms); /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: warning: variable 'natoms' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:98:13: note: uninitialized use occurs here 98 | if (natoms == 0) | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: note: remove the '&&' if its condition is always true 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:87:15: note: initialize the variable 'natoms' to silence this warning 87 | int natoms; | ^ | = 0 3 warnings generated. [ 59%] Linking CXX shared module ../../lib64/mdffformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/lpmdformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Built target lpmdformat /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmoldenformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/moldenformat.cpp 3 warnings generated. [ 59%] Linking CXX shared module ../../lib64/mmodformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/moldenformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mdffformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Built target mdffformat /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp 1 warning generated. [ 59%] Linking CXX shared module ../../lib64/mmcifformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mmodformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Built target mmodformat /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 59%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpqcformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpqcformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpqcformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp:210:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^ 2 warnings generated. [ 59%] Linking CXX shared module ../../lib64/mpdformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 1 warning generated. [ 60%] Linking CXX shared module ../../lib64/mpqcformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mmcifformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 60%] Built target mmcifformat /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" 1 warning generated. gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 60%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp [ 61%] Linking CXX shared module ../../lib64/moldenformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mpdformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Built target mpdformat /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsmsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msmsformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/mpqcformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Built target mpqcformat /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dopendxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msmsformat.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp:77:17: warning: unused variable 'title' [-Wunused-variable] 77 | const char* title = pConv->GetTitle(); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/moldenformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ [ 61%] Built target moldenformat /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Doutformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/outformat.cpp 1 warning generated. [ 61%] Linking CXX shared module ../../lib64/msmsformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 2 warnings generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/outformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 61%] Linking CXX shared module ../../lib64/msiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/msmsformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Built target msmsformat /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 61%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pcmodelformat.cpp 3 warnings generated. [ 62%] Linking CXX shared module ../../lib64/opendxformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/msiformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target msiformat /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pcmodelformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 62%] Linking CXX shared module ../../lib64/outformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/opendxformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target opendxformat /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/outformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target outformat /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dposformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/posformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:581:20: warning: unused variable 'child' [-Wunused-variable] 581 | unsigned int child=i; | ^~~~~ 1 warning generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:797:9: warning: unused variable 'fragments' [-Wunused-variable] 797 | int fragments = 0; | ^~~~~~~~~ [ 62%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp:191:9: warning: variable 'total_points' set but not used [-Wunused-but-set-variable] 191 | int total_points = 0; | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/posformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pcmodelformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target pcmodelformat /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpqrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:750:16: warning: unused function 'AtomsSoFar' [-Wunused-function] 750 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ 2 warnings generated. [ 62%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 62%] Linking CXX shared module ../../lib64/posformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pointcloudformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target pointcloudformat /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:207:13: warning: unused variable 'atom' [-Wunused-variable] 207 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:222:13: warning: unused variable 'atom' [-Wunused-variable] 222 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dshelxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/shelxformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/posformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target posformat /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmileyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/shelxformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] 158 | switch (chirality) { | ^~~~~~~~~ 1 warning generated. [ 62%] Linking CXX shared module ../../lib64/shelxformat.so 3 warnings generated. cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 [ 62%] Linking CXX shared module ../../lib64/pqrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:26: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:977:13: warning: field 'isExplicit' will be initialized after field 'pos' [-Wreorder-ctor] 975 | bool isExplicit_, std::size_t pos_) : number(number_), | ~~~~~~~~~~~~~~ | pos(pos_ 976 | order(order_), isUp(isUp_), isDown(isDown_), | ~~~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~~~~~ | number(number_ order(order_ isUp(isUp_ 977 | isExplicit(isExplicit_), pos(pos_) | ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ | isDown(isDown_ isExplicit(isExplicit_ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2409:41: note: in instantiation of member function 'Smiley::Parser::RingBondInfo::RingBondInfo' requested here 2409 | m_ringBonds[m_prev].push_back(RingBondInfo(rnum, m_bondOrder, m_isUp, m_isDown, m_explicitBond, pos)); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2429:11: note: in instantiation of member function 'Smiley::Parser::processRingBond' requested here 2429 | /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/shelxformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' processRingBond(m_str[m_pos] - '0', m_pos); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2507:13: note: in instantiation of member function 'Smiley::Parser::parseRingBond' requested here 2507 | parseRingBond(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2698:9: note: in instantiation of member function 'Smiley::Parser::parseChain' requested here 2698 | parseChain(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:370:14: note: in instantiation of member function 'Smiley::Parser::parse' requested here 370 | parser.parse(smiles); | ^ [ 62%] Built target shelxformat /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dstlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/stlformat.cpp 4 warnings generated. [ 62%] Linking CXX shared module ../../lib64/pdbqtformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pqrformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Built target pqrformat /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 62%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dthermoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/thermoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/stlformat.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/thermoformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 62%] Linking CXX shared module ../../lib64/stlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 3 warnings generated. [ 63%] Linking CXX shared module ../../lib64/smileyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pdbqtformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Built target pdbqtformat /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/stlformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Built target stlformat /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" [ 63%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtinkerformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dunichemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/unichemformat.cpp 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 63%] Linking CXX shared module ../../lib64/thermoformat.so In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/unichemformat.cpp:17: cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:416:31: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 416 | countNeighborC++; break; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:415:11: note: previous statement is here 415 | if (b->GetHyb() == 2) // S=C | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:259:20: warning: unused variable 'i' [-Wunused-variable] 259 | OBBondIterator i, j; | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/smileyformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Built target smileyformat /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dviewmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/viewmolformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/thermoformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 63%] Built target thermoformat /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 64%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dwlnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp 1 warning generated. [ 65%] Linking CXX shared module ../../lib64/unichemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/viewmolformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/unichemformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 65%] Built target unichemformat [ 65%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dwlnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wln-nextmove.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. [ 65%] Linking CXX shared module ../../lib64/tinkerformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp:138:17: warning: unused variable 'title' [-Wunused-variable] 138 | const char* title = pConv->GetTitle(); | ^~~~~ 1 warning generated. [ 65%] Linking CXX shared module ../../lib64/viewmolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 2 warnings generated. /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/tinkerformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" [ 65%] Built target tinkerformat gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 65%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd 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-fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xedformat.cpp [ 66%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxyzformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xyzformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/viewmolformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 66%] Built target viewmolformat /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 66%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dyasaraformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xedformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xyzformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:34: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:374:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 374 | int /*samenames,*/reslen,charged; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:497:29: warning: unused variable 'e' [-Wunused-variable] 497 | vector::iterator e; | ^ [ 66%] Linking CXX shared module ../../lib64/wlnformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/wlnformat.dir/link.txt --verbose=1 1 warning generated. [ 66%] Linking CXX shared module ../../lib64/xedformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/xedformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 66%] Built target xedformat /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 66%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drxnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rxnformat.cpp 1 warning generated. 3 warnings generated. [ 66%] Linking CXX shared module ../../lib64/xyzformat.so [ 66%] Linking CXX shared module ../../lib64/yasaraformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/wlnformat.dir/link.d 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-fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/yasaraformat.dir/link.d -Wl,-z,relro -Wl,--as-needed 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-isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp [ 68%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rinchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rxnformat.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rinchiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:477:27: warning: variable 'hasElement' set but not used [-Wunused-but-set-variable] 477 | bool isAlias=false, hasElement=false; | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ 1 warning generated. [ 68%] Linking CXX shared module ../../lib64/rxnformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] 911 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] 990 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/rxnformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 68%] Built target rxnformat /usr/bin/gmake -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 68%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drsmiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp 1 warning generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:47:34: warning: unused function 'bswap_64' [-Wunused-function] 47 | static inline unsigned long long bswap_64(unsigned long long x) { | ^~~~~~~~ [ 68%] Linking CXX shared module ../../lib64/rinchiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/rinchiformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 68%] Built target rinchiformat /usr/bin/gmake -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 68%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpng2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.cpp.o -MF CMakeFiles/png2format.dir/png2format.cpp.o.d -o CMakeFiles/png2format.dir/png2format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/png2format.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/png2format.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 5 warnings generated. [ 68%] Linking CXX shared module ../../lib64/chemdrawcdx.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 3 warnings generated. [ 69%] Linking CXX shared module ../../lib64/rsmiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/rsmiformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 69%] Built target rsmiformat [ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpng2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -MF CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o.d -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/cairopainter.cpp 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 69%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cdxmlformat.cpp 5 warnings generated. [ 70%] Linking CXX shared module ../../lib64/chemkinformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/chemdrawcdx.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 70%] Built target chemdrawcdx [ 70%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cdxmlformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 70%] Linking CXX shared module ../../lib64/png2format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/png2format.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 70%] Built target png2format /usr/bin/gmake -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 71%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -MF CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp 1 warning generated. 1 warning generated. [ 71%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp [ 72%] Linking CXX shared module ../../lib64/cdxmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/chemkinformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 72%] Built target chemkinformat /usr/bin/gmake -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake "--color=" In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 72%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchem_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -MF CMakeFiles/pubchem.dir/xml/pubchem.cpp.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/pubchem.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1269:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 1269 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1319:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 1319 | size_t time_res; /* Result of strftime */ | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cdxmlformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm /usr/lib64/libxml2.so ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1366:26: warning: unused variable 'C_DESCRIPTION' [-Wunused-variable] [ 72%] Built target cdxmlformat 1366 | static const xmlChar C_DESCRIPTION[] = "description"; | ^~~~~~~~~~~~~ [ 73%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchem_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:2308:26: warning: unused variable 'C_SCALAR' [-Wunused-variable] 2308 | static const xmlChar C_SCALAR[] = "scalar"; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/pubchem.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 74%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xmlformat.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:201:54: warning: private field 'TransformsNeeded' is not used [-Wunused-private-field] 201 | int CrystalScalarsNeeded, PropertyScalarsNeeded, TransformsNeeded; | ^ 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 74%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xmlformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 74%] Linking CXX shared module ../../lib64/pubchem.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 1 warning generated. [ 74%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/pubchem.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm /usr/lib64/libxml2.so ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | [ 74%] Built target pubchem # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ [ 74%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:610:10: warning: variable 'mollistPos' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 610 | if(reaclistPos!=string::npos) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:616:25: note: uninitialized use occurs here 616 | << s.substr(mollistPos, footerPos-mollistPos) //moleculeList | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:610:7: note: remove the 'if' if its condition is always true 610 | if(reaclistPos!=string::npos) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | mollistPos = s.find("ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:734:10: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] 734 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:773:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 773 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:111:8: warning: private field 'MolsHaveBeenAdded' is not used [-Wunused-private-field] 111 | bool MolsHaveBeenAdded; //separate OBMols during output | ^ 1 warning generated. [ 74%] Linking CXX shared module ../../lib64/xmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 1 warning generated. /usr/bin/gmake -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 74%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/chemdoodlejsonformat.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/xmlformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm /usr/lib64/libxml2.so ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 74%] Built target xmlformat /usr/bin/gmake -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 74%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/pubchemjsonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/chemdoodlejsonformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/pubchemjsonformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 8 warnings generated. 8 warnings generated. [ 75%] Linking CXX shared module ../../lib64/cmlreactformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 [ 75%] Linking CXX shared module ../../lib64/cmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cmlreactformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm /usr/lib64/libxml2.so ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 75%] Built target cmlreactformat /usr/bin/gmake -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obabel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 75%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obabel.dir/obabel.cpp.o -MF CMakeFiles/obabel.dir/obabel.cpp.o.d -o CMakeFiles/obabel.dir/obabel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obabel.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obabel.cpp:43: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 76%] Linking CXX executable ../bin/obabel cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cmlformat.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm /usr/lib64/libxml2.so ../../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 76%] Built target cmlformat /usr/bin/gmake -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 76%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obconformer.cpp 1 warning generated. [ 76%] Linking CXX shared module ../../lib64/chemdoodlejsonformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obabel.dir/link.d CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 76%] Built target obabel /usr/bin/gmake -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obenergy.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 77%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obconformer.cpp:25: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp:117:12: warning: variable 'c' set but not used [-Wunused-but-set-variable] 117 | for (int c = 1;; c++) { | ^ 2 warnings generated. [ 77%] Linking CXX executable ../bin/obenergy cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 1 warning generated. [ 77%] Linking CXX executable ../bin/obconformer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obconformer.dir/link.d CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib64/libopenbabel.so.7.0.0 -lm 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 77%] Built target obenergy [ 77%] Built target obconformer /usr/bin/gmake -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obfit.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f 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/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obgen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 77%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obgen.dir/obgen.cpp.o -MF CMakeFiles/obgen.dir/obgen.cpp.o.d -o CMakeFiles/obgen.dir/obgen.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfit.cpp:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfitall.cpp:40: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfitall.cpp:219:18: warning: unused variable 'best_rmsd' [-Wunused-variable] 219 | double best_rmsd = 999.999; | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp:47:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 47 | int c; | ^ 1 warning generated. [ 77%] Linking CXX shared module ../../lib64/pubchemjsonformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 2 warnings generated. [ 77%] Linking CXX executable ../bin/obgen cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 2 warnings generated. [ 78%] Linking CXX executable ../bin/obfitall cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfitall.dir/link.txt --verbose=1 1 warning generated. [ 78%] Linking CXX executable ../bin/obfit cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obgen.dir/link.d CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: 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/usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -MF CMakeFiles/obminimize.dir/obminimize.cpp.o.d -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obfitall.dir/link.d CMakeFiles/obfitall.dir/obfitall.cpp.o -o ../bin/obfitall ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 78%] Built target obfitall /usr/bin/gmake -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E 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tools/CMakeFiles/obmm.dir/obmm.cpp.o -MF CMakeFiles/obmm.dir/obmm.cpp.o.d -o CMakeFiles/obmm.dir/obmm.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obmm.cpp /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obfit.dir/link.d CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory 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/usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -MF CMakeFiles/obprobe.dir/obprobe.cpp.o.d -o CMakeFiles/obprobe.dir/obprobe.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp:41:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 41 | int c; | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obmm.cpp:58: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:46:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 46 | int c; | ^ 2 warnings generated. [ 79%] Linking CXX executable ../bin/obminimize cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obminimize.dir/link.d CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 79%] Built target obminimize /usr/bin/gmake -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obprop.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 80%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprop.dir/obprop.cpp.o -MF CMakeFiles/obprop.dir/obprop.cpp.o.d -o CMakeFiles/obprop.dir/obprop.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprop.cpp 1 warning generated. [ 80%] Linking CXX executable ../bin/obmm cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obmm.dir/link.txt --verbose=1 4 warnings generated. [ 80%] Linking CXX executable ../bin/obprobe cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprop.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obprobe.dir/link.d CMakeFiles/obprobe.dir/obprobe.cpp.o -o ../bin/obprobe ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 80%] Built target obprobe /usr/bin/gmake -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obmm.dir/link.d CMakeFiles/obmm.dir/obmm.cpp.o -o ../bin/obmm ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 80%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o -MF CMakeFiles/obrotamer.dir/obrotamer.cpp.o.d -o CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c 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/usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrotate.dir/obrotate.cpp.o -MF CMakeFiles/obrotate.dir/obrotate.cpp.o.d -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotate.cpp /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obsym.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 81%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obsym.dir/obsym.cpp.o -MF CMakeFiles/obsym.dir/obsym.cpp.o.d -o CMakeFiles/obsym.dir/obsym.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 81%] Linking CXX executable ../bin/obprop cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotate.cpp:43: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp:41:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 41 | int c; | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obprop.dir/link.d CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 81%] Built target obprop /usr/bin/gmake -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 81%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o -MF CMakeFiles/obtautomer.dir/obtautomer.cpp.o.d -o CMakeFiles/obtautomer.dir/obtautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp 2 warnings generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp[ 81%] Linking CXX executable ../bin/obsym cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 :32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/../src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/../src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obsym.dir/link.d CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 81%] Built target obsym /usr/bin/gmake -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obthermo.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 81%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obthermo.dir/obthermo.cpp.o -MF CMakeFiles/obthermo.dir/obthermo.cpp.o.d -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp 1 warning generated. [ 81%] Linking CXX executable ../bin/obrotate cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 3 warnings generated. [ 82%] Linking CXX executable ../bin/obrotamer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp:47:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 47 | int c; | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obrotate.dir/link.d CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Built target obrotate /usr/bin/gmake -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o -MF CMakeFiles/obdistgen.dir/obdistgen.cpp.o.d -o CMakeFiles/obdistgen.dir/obdistgen.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obrotamer.dir/link.d CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Built target obrotamer /usr/bin/gmake -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obgrep.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obgrep.dir/obgrep.cpp.o -MF CMakeFiles/obgrep.dir/obgrep.cpp.o.d -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgrep.cpp 2 warnings generated. /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:159:18: warning: unused variable 'Rgas' [-Wunused-variable] 159 | double Rgas = 1.9872041; // cal/mol K | ^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:42:10: warning: variable 'bKJ' set but not used [-Wunused-but-set-variable] 42 | bool bKJ = false; | ^ [ 82%] Linking CXX executable ../bin/obtautomer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obtautomer.dir/link.d CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Built target obtautomer /usr/bin/gmake -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 82%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -MF CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o.d -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obspectrophore.cpp 3 warnings generated. [ 83%] Linking CXX executable ../bin/obthermo cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgrep.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgrep.cpp:59:48: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obthermo.dir/link.d CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so 59 | while ((cgmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' = getopt(argc, argv, "t:nvcfi:-")) != -1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~ [ 83%] Built target obthermo /usr/bin/gmake -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools/CMakeFiles/obrms.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 83%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrms.dir/obrms.cpp.o -MF CMakeFiles/obrms.dir/obrms.cpp.o.d -o CMakeFiles/obrms.dir/obrms.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obspectrophore.cpp:10: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. [ 83%] Linking CXX executable ../bin/obgrep cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obgrep.dir/link.d CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 83%] Built target obgrep /usr/bin/gmake -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 84%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o -MF CMakeFiles/obgui.dir/OBGUI.cpp.o.d -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:111:9: warning: suggest braces around initialization of subobject [-Wmissing-braces] 111 | { 0 }; | ^ | {} /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:219:7: warning: unused variable 'help' [-Wunused-variable] 219 | bool help = false; | ^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp:44:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 44 | int c; | ^ 1 warning generated. [ 84%] Linking CXX executable ../bin/obspectrophore cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 2 warnings generated. [ 84%] Linking CXX executable ../bin/obdistgen cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obdistgen.dir/link.d CMakeFiles/obdistgen.dir/obdistgen.cpp.o -o ../bin/obdistgen ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 84%] Built target obdistgen /usr/bin/gmake -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test/CMakeFiles/test_runner.dir/DependInfo.cmake "--color=" 3 warnings generated. gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o [ 84%] Linking CXX executable ../bin/obrms cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/test_runner.cpp.o -MF CMakeFiles/test_runner.dir/test_runner.cpp.o.d -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test/test_runner.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1 [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aligntest.cpp.o -MF CMakeFiles/test_runner.dir/aligntest.cpp.o.d -o CMakeFiles/test_runner.dir/aligntest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aligntest.cpp /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obspectrophore.dir/link.d CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 84%] Built target obspectrophore [ 84%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o -MF CMakeFiles/obgui.dir/stdwx.cpp.o.d -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/stdwx.cpp /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obrms.dir/link.d CMakeFiles/obrms.dir/obrms.cpp.o -o ../bin/obrms ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 84%] Built target obrms [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aliastest.cpp.o -MF CMakeFiles/test_runner.dir/aliastest.cpp.o.d -o CMakeFiles/test_runner.dir/aliastest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aligntest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:129:21: warning: unused variable 'splash' [-Wunused-variable] 129 | wxSplashScreen* splash = new wxSplashScreen(bitmap, | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:589:3: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result] 589 | ss.str(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:1005:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] 1005 | int n; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp:52:18: warning: unused variable 'ad' [-Wunused-variable] 52 | AliasData* ad = nullptr; | ^~ 2 warnings generated. [ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -MF CMakeFiles/obgui.dir/optswx.cpp.o.d -o CMakeFiles/obgui.dir/optswx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp /usr/bin/gmake -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -MF CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/inchiwrite.cpp 1 warning generated. [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/automorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/automorphismtest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/inchiwrite.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/automorphismtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -MF CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp:166:22: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] 166 | while((ch=is.get())!=EOF) | ~~~~~~~~~~~~~^ ~~~ 1 warning generated. [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/buildertest.cpp.o -MF CMakeFiles/test_runner.dir/buildertest.cpp.o.d -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/buildertest.cpp 1 warning generated. [ 86%] Linking CXX executable ../bin/test_inchiwrite cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/./optswx.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | if(pdef=strcasestr(pCaption,"default")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: note: place parentheses around the assignment to silence this warning 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | ( ) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: note: use '==' to turn this assignment into an equality comparison 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | == /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:226:17: warning: unused variable 'tok' [-Wunused-variable] 226 | char* tok=strtok(pdef," :-\t' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonconsistenttest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/buildertest.cpp:15:21: warning: unused variable 'failed' [-Wunused-variable] 15 | static unsigned int failed = 0; | ^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonfragmenttest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 2 warnings generated. 8 warnings generated. [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o -MF CMakeFiles/test_runner.dir/canonstabletest.cpp.o.d -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonstabletest.cpp [ 87%] Linking CXX executable ../../bin/obgui cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1 1 warning generated. [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -MF CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o.d -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/carspacegrouptest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonstabletest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: 1In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ warning generated. /usr/bin/gmake -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test/CMakeFiles/roundtrip.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 87%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o -MF CMakeFiles/roundtrip.dir/roundtrip.cpp.o.d -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/roundtrip.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/carspacegrouptest.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/roundtrip.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -MF CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o.d -o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cifspacegrouptest.cpp 41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cistranstest.cpp.o -MF CMakeFiles/test_runner.dir/cistranstest.cpp.o.d -o CMakeFiles/test_runner.dir/cistranstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cistranstest.cpp 1 warning generated. [ 87%] Linking CXX executable ../bin/roundtrip cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cifspacegrouptest.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/roundtrip.dir/link.d CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 87%] Built target roundtrip [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversiontest.cpp.o -MF CMakeFiles/test_runner.dir/conversiontest.cpp.o.d -o CMakeFiles/test_runner.dir/conversiontest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversiontest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cistranstest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversiontest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/gmake -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 88%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp, /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel.py cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/swig -python -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-python.i /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Xlinker --dependency-file=CMakeFiles/obgui.dir/link.d CMakeFiles/obgui.dir/OBGUI.cpp.o CMakeFiles/obgui.dir/stdwx.cpp.o CMakeFiles/obgui.dir/optswx.cpp.o -o ../../bin/obgui ../../lib64/libopenbabel.so.7.0.0 -pthread -lwx_baseu-3.2 -lwx_gtk3u_core-3.2 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 88%] Built target obgui [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o -MF CMakeFiles/test_runner.dir/graphsymtest.cpp.o.d -o CMakeFiles/test_runner.dir/graphsymtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/graphsymtest.cpp 1 warning generated. /usr/bin/gmake -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 89%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-perl.i 1 warning generated. [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/gziptest.cpp.o -MF CMakeFiles/test_runner.dir/gziptest.cpp.o.d -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/gziptest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/graphsymtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/gziptest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). 1 warning generated. /usr/bin/gmake -f scripts/CMakeFiles/bindings_ruby.dir/build.make scripts/CMakeFiles/bindings_ruby.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 89%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-ruby.i 1 warning generated. [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/addhtest.cpp.o -MF CMakeFiles/test_runner.dir/addhtest.cpp.o.d -o CMakeFiles/test_runner.dir/addhtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/addhtest.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/addhtest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) 1 warning generated. [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o -MF CMakeFiles/test_runner.dir/implicitHtest.cpp.o.d -o CMakeFiles/test_runner.dir/implicitHtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/implicitHtest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/implicitHtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/lssrtest.cpp.o -MF CMakeFiles/test_runner.dir/lssrtest.cpp.o.d -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 89%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_perl_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.14 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -MF CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o.d -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp:173:8: warning: unused variable 'fail' [-Wunused-variable] 173 | bool fail = false; | ^~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1795: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1795: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1805: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1992:58: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] 1992 | if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) { | ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~ /usr/bin/../lib/clang/20/include/limits.h:65:37: note: expanded from macro 'ULONG_MAX' 65 | #define ULONG_MAX (__LONG_MAX__ *2UL+1UL) | ~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:2056:65: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] 2056 | if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) { | ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~ /usr/bin/../lib/clang/20/include/limits.h:51:19: note: expanded from macro 'LONG_MAX' 51 | #define LONG_MAX __LONG_MAX__ | ^~~~~~~~~~~~ :98:22: note: expanded from macro '__LONG_MAX__' 98 | #define __LONG_MAX__ 9223372036854775807L | ^~~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/isomorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/isomorphismtest.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 90%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_python_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.14 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -MF CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o.d -o CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:207: In file included from /usr/include/python3.14/Python.h:14: In file included from /usr/include/python3.14/pyconfig.h:6: /usr/include/python3.14/pyconfig-64.h:1998:9: warning: '_LARGEFILE_SOURCE' macro redefined [-Wmacro-redefined] 1998 | #define _LARGEFILE_SOURCE 1 | ^ :10:9: note: previous definition is here 10 | #define _LARGEFILE_SOURCE | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/isomorphismtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11205:45: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11205 | XS(_wrap_new_Dummy) { { int argvi = 0; std::binary_function< char const *,char const *,bool > *result = 0 ; dXSARGS; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11207:20: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11207 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # deIn file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3696: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3696: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ fine _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11207:81: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11207 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11211:10: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11211 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11211:74: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11211 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,boolIn file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3703: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3703: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ > *) 0 ; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11217:36: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11217 | arg1 = reinterpret_cast< std::binary_function< char const *,char const *,bool > * >(argp1); delete arg1; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3710: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && sed -e 's/rb_define_module("Openbabel")/rb_define_module("OpenBabel")/' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.txt cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts/CMakeFiles/bindings_ruby.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/gmake -f scripts/CMakeFiles/bindings_ruby.dir/build.make scripts/CMakeFiles/bindings_ruby.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 90%] Building CXX object scripts/CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_ruby_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.14 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o -MF CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o.d -o CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp 1 warning generated. [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/multicmltest.cpp.o -MF CMakeFiles/test_runner.dir/multicmltest.cpp.o.d -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/multicmltest.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1611:11: warning: 'rb_data_object_wrap_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1611 | obj = Data_Wrap_Struct(sklass->klass, VOIDFUNC(sklass->mark), | ^ /usr/include/ruby/internal/core/rdata.h:199:5: note: expanded from macro 'Data_Wrap_Struct' 199 | rb_data_object_wrap( \ | ^ /usr/include/ruby/internal/core/rdata.h:363:31: note: expanded from macro 'rb_data_object_wrap' 363 | #define rb_data_object_wrap RUBY_MACRO_SELECT(rb_data_object_wrap_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :31:1: note: expanded from here 31 | rb_data_object_wrap_1 | ^ /usr/include/ruby/internal/core/rdata.h:361:31: note: expanded from macro 'rb_data_object_wrap_1' 361 | #define rb_data_object_wrap_1 rb_data_object_wrap_warning | ^ /usr/include/ruby/internal/core/rdata.h:277:1: note: 'rb_data_object_wrap_warning' has been explicitly marked deprecated here 277 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1626:11: warning: 'rb_data_object_wrap_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1626 | obj = Data_Wrap_Struct(klass, 0, 0, ptr); | ^ /usr/include/ruby/internal/core/rdata.h:199:5: note: expanded from macro 'Data_Wrap_Struct' 199 | rb_data_object_wrap( \ | ^ /usr/include/ruby/internal/core/rdata.h:363:31: note: expanded from macro 'rb_data_object_wrap' 363 | #define rb_data_object_wrap RUBY_MACRO_SELECT(rb_data_object_wrap_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :52:1: note: expanded from here 52 | rb_data_object_wrap_1 | ^ /usr/include/ruby/internal/core/rdata.h:361:31: note: expanded from macro 'rb_data_object_wrap_1' 361 | #define rb_data_object_wrap_1 rb_data_object_wrap_warning | ^ /usr/include/ruby/internal/core/rdata.h:277:1: note: 'rb_data_object_wrap_warning' has been explicitly marked deprecated here 277 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1639:9: warning: 'rb_data_object_wrap_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1639 | obj = Data_Wrap_Struct(klass, VOIDFUNC(sklass->mark), VOIDFUNC(sklass->destroy), 0); | ^ /usr/include/ruby/internal/core/rdata.h:199:5: note: expanded from macro 'Data_Wrap_Struct' 199 | rb_data_object_wrap( \ | ^ /usr/include/ruby/internal/core/rdata.h:363:31: note: expanded from macro 'rb_data_object_wrap' 363 | #define rb_data_object_wrap RUBY_MACRO_SELECT(rb_data_object_wrap_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :73:1: note: expanded from here 73 | rb_data_object_wrap_1 | ^ /usr/include/ruby/internal/core/rdata.h:361:31: note: expanded from macro 'rb_data_object_wrap_1' 361 | #define rb_data_object_wrap_1 rb_data_object_wrap_warning | ^ /usr/include/ruby/internal/core/rdata.h:277:1: note: 'rb_data_object_wrap_warning' has been explicitly marked deprecated here 277 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1687:5: warning: 'rb_data_object_get_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1687 | Data_Get_Struct(obj, void, vptr); | ^ /usr/include/ruby/internal/core/rdata.h:275:34: note: expanded from macro 'Data_Get_Struct' 275 | ((sval) = RBIMPL_CAST((type*)rb_data_object_get(obj))) | ^ /usr/include/ruby/internal/core/rdata.h:367:31: note: expanded from macro 'rb_data_object_get' 367 | #define rb_data_object_get RUBY_MACRO_SELECT(rb_data_object_get_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :144:1: note: expanded from here 144 | rb_data_object_get_1 | ^ /usr/include/ruby/internal/core/rdata.h:365:31: note: expanded from macro 'rb_data_object_get_1' 365 | #define rb_data_object_get_1 rb_data_object_get_warning | ^ /usr/include/ruby/internal/core/rdata.h:314:1: note: 'rb_data_object_get_warning' has been explicitly marked deprecated here 314 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1823:5: warning: 'rb_data_object_get_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1823 | Data_Get_Struct(pointer, swig_module_info, ret); | ^ /usr/include/ruby/internal/core/rdata.h:275:34: note: expanded from macro 'Data_Get_Struct' 275 | ((sval) = RBIMPL_CAST((type*)rb_data_object_get(obj))) | ^ /usr/include/ruby/internal/core/rdata.h:367:31: note: expanded from macro 'rb_data_object_get' 367 | #define rb_data_object_get RUBY_MACRO_SELECT(rb_data_object_get_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :47:1: note: expanded from here 47 | rb_data_object_get_1 | ^ /usr/include/ruby/internal/core/rdata.h:365:31: note: expanded from macro 'rb_data_object_get_1' 365 | #define rb_data_object_get_1 rb_data_object_get_warning | ^ /usr/include/ruby/internal/core/rdata.h:314:1: note: 'rb_data_object_get_warning' has been explicitly marked deprecated here 314 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:1838:36: warning: 'rb_data_object_wrap_warning' is deprecated: by TypedData [-Wdeprecated-declarations] 1838 | swig_runtime_data_type_pointer = Data_Wrap_Struct(cl, 0, 0, pointer); | ^ /usr/include/ruby/internal/core/rdata.h:199:5: note: expanded from macro 'Data_Wrap_Struct' 199 | rb_data_object_wrap( \ | ^ /usr/include/ruby/internal/core/rdata.h:363:31: note: expanded from macro 'rb_data_object_wrap' 363 | #define rb_data_object_wrap RUBY_MACRO_SELECT(rb_data_object_wrap_2, RUBY_UNTYPED_DATA_WARNING) | ^ /usr/include/ruby/internal/core/rdata.h:50:35: note: expanded from macro 'RUBY_MACRO_SELECT' 50 | #define RUBY_MACRO_SELECT(x, y) RBIMPL_MACRO_SELECT(x, y) | ^ /usr/include/ruby/internal/core/rdata.h:49:35: note: expanded from macro 'RBIMPL_MACRO_SELECT' 49 | #define RBIMPL_MACRO_SELECT(x, y) x ## y | ^ :58:1: note: expanded from here 58 | rb_data_object_wrap_1 | ^ /usr/include/ruby/internal/core/rdata.h:361:31: note: expanded from macro 'rb_data_object_wrap_1' 361 | #define rb_data_object_wrap_1 rb_data_object_wrap_warning | ^ /usr/include/ruby/internal/core/rdata.h:277:1: note: 'rb_data_object_wrap_warning' has been explicitly marked deprecated here 277 | RBIMPL_ATTRSET_UNTYPED_DATA_FUNC() | ^ /usr/include/ruby/internal/core/rdata.h:47:5: note: expanded from macro 'RBIMPL_ATTRSET_UNTYPED_DATA_FUNC' 47 | RBIMPL_ATTR_DEPRECATED(("by TypedData")) | ^ /usr/include/ruby/internal/attr/deprecated.h:36:53: note: expanded from macro 'RBIMPL_ATTR_DEPRECATED' 36 | # define RBIMPL_ATTR_DEPRECATED(msg) __attribute__((__deprecated__ msg)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/multicmltest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2208: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2208: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2215: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2215: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ 1 warning generated. [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/periodictest.cpp.o -MF CMakeFiles/test_runner.dir/periodictest.cpp.o.d -o CMakeFiles/test_runner.dir/periodictest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/periodictest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2220: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/periodictest.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22583:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22583 | std::binary_function< char const *,char const *,bool > *result = 0 ; (void)self; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22585:18: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22585 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22585:79: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22585 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22589:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22589 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22589:72: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22589 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22594:34: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22594 | arg1 = reinterpret_cast< std::binary_function< char const *,char const *,bool > * >(argp1); delete arg1; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21584:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21584 | std::binary_function< char const *,char const *,bool > *result = 0 ; if ((argc < 0) || (argc > 0)) { | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21586:18: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21586 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21586:79: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21586 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21590:10: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21590 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *)self; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21590:74: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21590 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *)self; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/regressionstest.cpp.o -MF CMakeFiles/test_runner.dir/regressionstest.cpp.o.d -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/regressionstest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/regressionstest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # def/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:41476:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41476 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ ine _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:50903:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 50903 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:53298:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 53298 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/rotortest.cpp.o -MF CMakeFiles/test_runner.dir/rotortest.cpp.o.d -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/rotortest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/rotortest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/shuffletest.cpp.o -MF CMakeFiles/test_runner.dir/shuffletest.cpp.o.d -o CMakeFiles/test_runner.dir/shuffletest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/shuffletest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/shuffletest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilestest.cpp.o -MF CMakeFiles/test_runner.dir/smilestest.cpp.o.d -o CMakeFiles/test_runner.dir/smilestest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilestest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilestest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -MF CMakeFiles/test_runner.dir/spectrophoretest.cpp.o.d -o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/spectrophoretest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/spectrophoretest.cpp:3: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o -MF CMakeFiles/test_runner.dir/squareplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/squareplanartest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/squareplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereotest.cpp.o -MF CMakeFiles/test_runner.dir/stereotest.cpp.o.d -o CMakeFiles/test_runner.dir/stereotest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] 102 | switch (units.at(i).type) { | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] 132 | switch (units.at(i).type) { | ^~~~~~~~~~~~~~~~ 3 warnings generated. [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -MF CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o.d -o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 255 | // / \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 270 | // / \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 285 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 287 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 310 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 432 | // \ | ^ 7 warnings generated. [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tautomertest.cpp.o -MF CMakeFiles/test_runner.dir/tautomertest.cpp.o.d -o CMakeFiles/test_runner.dir/tautomertest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tautomertest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tautomertest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -MF CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o.d -o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetrahedraltest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetrahedraltest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetranonplanartest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetranonplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetraplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetraplanartest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetraplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -MF CMakeFiles/test_runner.dir/uniqueidtest.cpp.o.d -o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/uniqueidtest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/uniqueidtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aromatest.cpp.o -MF CMakeFiles/test_runner.dir/aromatest.cpp.o.d -o CMakeFiles/test_runner.dir/aromatest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aromatest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aromatest.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/atom.cpp.o -MF CMakeFiles/test_runner.dir/atom.cpp.o.d -o CMakeFiles/test_runner.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/atom.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/atom.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/bond.cpp.o -MF CMakeFiles/test_runner.dir/bond.cpp.o.d -o CMakeFiles/test_runner.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/bond.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cansmi.cpp.o -MF CMakeFiles/test_runner.dir/cansmi.cpp.o.d -o CMakeFiles/test_runner.dir/cansmi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cansmi.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cansmi.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -MF CMakeFiles/test_runner.dir/charge_mmff94.cpp.o.d -o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_mmff94.cpp:13: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -MF CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o.d -o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_gasteiger.cpp:13: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversion.cpp.o -MF CMakeFiles/test_runner.dir/conversion.cpp.o.d -o CMakeFiles/test_runner.dir/conversion.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversion.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversion.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/datatest.cpp.o -MF CMakeFiles/test_runner.dir/datatest.cpp.o.d -o CMakeFiles/test_runner.dir/datatest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/datatest.cpp [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffgaff.cpp.o -MF CMakeFiles/test_runner.dir/ffgaff.cpp.o.d -o CMakeFiles/test_runner.dir/ffgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffgaff.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffgaff.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffghemical.cpp.o -MF CMakeFiles/test_runner.dir/ffghemical.cpp.o.d -o CMakeFiles/test_runner.dir/ffghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffghemical.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffghemical.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o -MF CMakeFiles/test_runner.dir/ffmmff94.cpp.o.d -o CMakeFiles/test_runner.dir/ffmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffmmff94.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffuff.cpp.o -MF CMakeFiles/test_runner.dir/ffuff.cpp.o.d -o CMakeFiles/test_runner.dir/ffuff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffuff.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffuff.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formalcharge.cpp.o -MF CMakeFiles/test_runner.dir/formalcharge.cpp.o.d -o CMakeFiles/test_runner.dir/formalcharge.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formalcharge.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formalcharge.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/format.cpp.o -MF CMakeFiles/test_runner.dir/format.cpp.o.d -o CMakeFiles/test_runner.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/format.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/format.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formula.cpp.o -MF CMakeFiles/test_runner.dir/formula.cpp.o.d -o CMakeFiles/test_runner.dir/formula.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formula.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formula.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/internalcoord.cpp.o -MF CMakeFiles/test_runner.dir/internalcoord.cpp.o.d -o CMakeFiles/test_runner.dir/internalcoord.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/internalcoord.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/internalcoord.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmarts.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmarts.cpp [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmiles.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmiles.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmiles.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/iterators.cpp.o -MF CMakeFiles/test_runner.dir/iterators.cpp.o.d -o CMakeFiles/test_runner.dir/iterators.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/iterators.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/iterators.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/logp_psa.cpp.o -MF CMakeFiles/test_runner.dir/logp_psa.cpp.o.d -o CMakeFiles/test_runner.dir/logp_psa.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/logp_psa.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/logp_psa.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/math.cpp.o -MF CMakeFiles/test_runner.dir/math.cpp.o.d -o CMakeFiles/test_runner.dir/math.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp:30: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/../src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/../src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ 2 warnings generated. [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/mol.cpp.o -MF CMakeFiles/test_runner.dir/mol.cpp.o.d -o CMakeFiles/test_runner.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/mol.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -MF CMakeFiles/test_runner.dir/pdbreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/pdbreadfile.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/pdbreadfile.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/phmodel.cpp.o -MF CMakeFiles/test_runner.dir/phmodel.cpp.o.d -o CMakeFiles/test_runner.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/phmodel.cpp:25: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/residue.cpp.o -MF CMakeFiles/test_runner.dir/residue.cpp.o.d -o CMakeFiles/test_runner.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/residue.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ringtest.cpp.o -MF CMakeFiles/test_runner.dir/ringtest.cpp.o.d -o CMakeFiles/test_runner.dir/ringtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ringtest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ringtest.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartstest.cpp.o -MF CMakeFiles/test_runner.dir/smartstest.cpp.o.d -o CMakeFiles/test_runner.dir/smartstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp:129:16: warning: variable 'res_line' set but not used [-Wunused-but-set-variable] 129 | unsigned int res_line = 0; | ^ 2 warnings generated. [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartsparse.cpp.o -MF CMakeFiles/test_runner.dir/smartsparse.cpp.o.d -o CMakeFiles/test_runner.dir/smartsparse.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartsparse.cpp [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o -MF CMakeFiles/test_runner.dir/smilesmatch.cpp.o.d -o CMakeFiles/test_runner.dir/smilesmatch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilesmatch.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilesmatch.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/unitcell.cpp.o -MF CMakeFiles/test_runner.dir/unitcell.cpp.o.d -o CMakeFiles/test_runner.dir/unitcell.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/unitcell.cpp [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -MF CMakeFiles/test_runner.dir/cmlreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cmlreadfile.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cmlreadfile.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:119:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 119 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/aarch64-redhat-linux/15/../../../../include/c++/15/aarch64-redhat-linux/bits/c++config.h:110:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 110 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 13 warnings generated. [ 99%] Linking CXX shared module /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/_openbabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 1 warning generated. [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtest_runner_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/obtest.cpp.o -MF CMakeFiles/test_runner.dir/obtest.cpp.o.d -o CMakeFiles/test_runner.dir/obtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.cpp [ 99%] Linking CXX executable ../bin/test_runner cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -Wl,--export-dynamic -rdynamic -Xlinker --dependency-file=CMakeFiles/test_runner.dir/link.d CMakeFiles/test_runner.dir/test_runner.cpp.o CMakeFiles/test_runner.dir/aligntest.cpp.o CMakeFiles/test_runner.dir/aliastest.cpp.o CMakeFiles/test_runner.dir/automorphismtest.cpp.o CMakeFiles/test_runner.dir/buildertest.cpp.o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o CMakeFiles/test_runner.dir/canonstabletest.cpp.o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cistranstest.cpp.o CMakeFiles/test_runner.dir/conversiontest.cpp.o CMakeFiles/test_runner.dir/graphsymtest.cpp.o CMakeFiles/test_runner.dir/gziptest.cpp.o CMakeFiles/test_runner.dir/addhtest.cpp.o CMakeFiles/test_runner.dir/implicitHtest.cpp.o CMakeFiles/test_runner.dir/lssrtest.cpp.o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o CMakeFiles/test_runner.dir/multicmltest.cpp.o CMakeFiles/test_runner.dir/periodictest.cpp.o CMakeFiles/test_runner.dir/regressionstest.cpp.o CMakeFiles/test_runner.dir/rotortest.cpp.o CMakeFiles/test_runner.dir/shuffletest.cpp.o CMakeFiles/test_runner.dir/smilestest.cpp.o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o CMakeFiles/test_runner.dir/squareplanartest.cpp.o CMakeFiles/test_runner.dir/stereotest.cpp.o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o CMakeFiles/test_runner.dir/tautomertest.cpp.o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o CMakeFiles/test_runner.dir/aromatest.cpp.o CMakeFiles/test_runner.dir/atom.cpp.o CMakeFiles/test_runner.dir/bond.cpp.o CMakeFiles/test_runner.dir/cansmi.cpp.o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o CMakeFiles/test_runner.dir/conversion.cpp.o CMakeFiles/test_runner.dir/datatest.cpp.o CMakeFiles/test_runner.dir/ffgaff.cpp.o CMakeFiles/test_runner.dir/ffghemical.cpp.o CMakeFiles/test_runner.dir/ffmmff94.cpp.o CMakeFiles/test_runner.dir/ffuff.cpp.o CMakeFiles/test_runner.dir/formalcharge.cpp.o CMakeFiles/test_runner.dir/format.cpp.o CMakeFiles/test_runner.dir/formula.cpp.o CMakeFiles/test_runner.dir/internalcoord.cpp.o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o CMakeFiles/test_runner.dir/iterators.cpp.o CMakeFiles/test_runner.dir/logp_psa.cpp.o CMakeFiles/test_runner.dir/math.cpp.o CMakeFiles/test_runner.dir/mol.cpp.o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o CMakeFiles/test_runner.dir/phmodel.cpp.o CMakeFiles/test_runner.dir/residue.cpp.o CMakeFiles/test_runner.dir/ringtest.cpp.o CMakeFiles/test_runner.dir/smartstest.cpp.o CMakeFiles/test_runner.dir/smartsparse.cpp.o CMakeFiles/test_runner.dir/smilesmatch.cpp.o CMakeFiles/test_runner.dir/unitcell.cpp.o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o CMakeFiles/test_runner.dir/obtest.cpp.o -o ../bin/test_runner ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [ 99%] Built target test_runner 17 warnings generated. [100%] Linking CXX shared module ../lib64/openbabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_ruby.dir/link.txt --verbose=1 12 warnings generated. [100%] Linking CXX shared module ../lib64/OpenBabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_perl.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/bindings_python.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/_openbabel.so "CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o" /usr/lib64/libpython3.14.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [100%] Built target bindings_python /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/bindings_ruby.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/openbabel.so "CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o" /usr/lib64/libruby.so ../lib64/libopenbabel.so.7.0.0 -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [100%] Built target bindings_ruby /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Xlinker --dependency-file=CMakeFiles/bindings_perl.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/OpenBabel.so "CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o" /usr/lib64/libperl.so ../lib64/libopenbabel.so.7.0.0 -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lm -ldl /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' [100%] Built target bindings_perl gmake[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sKnf6A + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + '[' /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build + mkdir /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + DESTDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/babelconfig.h -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/pkgconfig/openbabel-3.pc -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/cmake/openbabel3/OpenBabel3_EXPORTS.cmake -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/cmake/openbabel3/OpenBabel3_EXPORTS-release.cmake -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/cmake/openbabel3/OpenBabel3Config.cmake -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/cmake/openbabel3/OpenBabel3ConfigVersion.cmake -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/chemdrawcdx.h -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/alias.h -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/atom.h -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/base.h -- Installing: /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/include/openbabel3/openbabel/bitvec.h -- Installing: 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--unique-debug-suffix -3.1.1-39.fc44.aarch64 --unique-debug-src-base openbabel-3.1.1-39.fc44.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 find-debuginfo: starting Extracting debug info from 151 files DWARF-compressing 151 files dwz: ./usr/bin/obabel-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obconformer-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obdistgen-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obenergy-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obfit-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obfitall-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obgen-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: 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debugging section .debug_addr dwz: ./usr/lib64/openbabel3/boxformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cacaoformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cacheformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/carformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/castepformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cccformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cdxmlformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chem3dformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chemdoodlejsonformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chemdrawcdx.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chemdrawct.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chemkinformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/chemtoolformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cifformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cmlformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cmlreactformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cofformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/confabreport.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/copyformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/crkformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/crystal09format.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/cssrformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/daltonformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/dlpolyformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/dmolformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/exyzformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fastaformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fastsearchformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fchkformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/featformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fhformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fhiaimsformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fingerprintformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fpsformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/freefracformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gamessformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gamessukformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gausscubeformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gaussformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gausszmatformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/ghemicalformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/groformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gromos96format.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gulpformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/hinformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/inchiformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/jaguarformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/lmpdatformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/lpmdformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mdffformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mdlformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mmcifformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mmodformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mol2format.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/moldenformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/molproformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/molreport.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mopacformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mpdformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mpqcformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/msiformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/msmsformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/nulformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/nwchemformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/opendxformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/orcaformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/outformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/painterformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pcmodelformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pdbformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pdbqtformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_charges.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_descriptors.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_fingerprints.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_forcefields.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_ops.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/png2format.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pngformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pointcloudformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/posformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/povrayformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pqrformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pubchem.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pubchemjsonformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pwscfformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/qchemformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/reportformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rinchiformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rsmiformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rxnformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/shelxformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/siestaformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/smilesformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/smileyformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/stlformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/svgformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/textformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/thermoformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/tinkerformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/titleformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/turbomoleformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/unichemformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/vaspformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/viewmolformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/wlnformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xedformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xmlformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xsfformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xyzformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/yasaraformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/zindoformat.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/perl5/vendor_perl/auto/Chemistry/OpenBabel/OpenBabel.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/python3.14/site-packages/openbabel/_openbabel.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/ruby/vendor_ruby/openbabel.so-3.1.1-39.fc44.aarch64.debug: Unknown debugging section .debug_addr dwz: Too few files for multifile optimization sepdebugcrcfix: Updated 0 CRC32s, 151 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/openbabel-3.1.1-39.fc44.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.14 using python3.14 Bytecompiling .py files below /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14/site-packages/openbabel/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14/site-packages/openbabel/__pycache__/pybel.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14/site-packages/openbabel/__pycache__/openbabel.cpython-314.opt-1.pyc: rewriting with normalized contents Scanned 91 directories and 886 files, processed 23 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/openbabel-3.1.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rvcPj7 + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + rm -f redhat-linux-build/lib64/openbabel.so + export CTEST_OUTPUT_ON_FAILURE=1 + CTEST_OUTPUT_ON_FAILURE=1 + export PYTHONPATH=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14/site-packages + PYTHONPATH=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.14/site-packages + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j4 -E 'pybindtest_bindings|pybindtest_obconv_writers|test_align_4|test_align_5' Internal ctest changing into directory: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build Test project /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/redhat-linux-build Start 1: test_align_1 Start 2: test_align_2 Start 3: test_align_3 Start 4: test_alias_1 1/208 Test #1: test_align_1 ..................... Passed 0.01 sec Start 5: test_automorphism_1 2/208 Test #2: test_align_2 ..................... Passed 0.01 sec 3/208 Test #3: test_align_3 ..................... Passed 0.00 sec Start 6: test_automorphism_2 Start 7: test_automorphism_3 4/208 Test #5: test_automorphism_1 .............. Passed 0.04 sec Start 8: test_automorphism_4 5/208 Test #6: test_automorphism_2 .............. Passed 0.04 sec 6/208 Test #7: test_automorphism_3 .............. Passed 0.03 sec Start 9: test_automorphism_5 Start 10: test_automorphism_6 7/208 Test #4: test_alias_1 ..................... Passed 0.04 sec Start 11: test_automorphism_7 8/208 Test #8: test_automorphism_4 .............. Passed 0.02 sec Start 12: test_automorphism_8 9/208 Test #9: test_automorphism_5 .............. Passed 0.02 sec 10/208 Test #10: test_automorphism_6 .............. Passed 0.02 sec Start 13: test_automorphism_9 Start 14: test_automorphism_10 11/208 Test #11: test_automorphism_7 .............. Passed 0.02 sec Start 15: test_builder_1 12/208 Test #12: test_automorphism_8 .............. Passed 0.02 sec Start 16: test_builder_2 13/208 Test #13: test_automorphism_9 .............. Passed 0.02 sec 14/208 Test #14: test_automorphism_10 ............. Passed 0.02 sec Start 17: test_builder_3 Start 18: test_builder_4 15/208 Test #17: test_builder_3 ................... Passed 0.06 sec 16/208 Test #18: test_builder_4 ................... Passed 0.06 sec Start 19: test_builder_5 Start 20: test_builder_6 17/208 Test #20: test_builder_6 ................... Passed 0.06 sec Start 21: test_canonconsistent_1 18/208 Test #19: test_builder_5 ................... Passed 0.06 sec Start 22: test_canonconsistent_2 19/208 Test #22: test_canonconsistent_2 ........... Passed 0.02 sec Start 23: test_canonconsistent_3 20/208 Test #23: test_canonconsistent_3 ........... Passed 0.03 sec Start 24: test_canonfragment_1 21/208 Test #16: test_builder_2 ................... Passed 0.19 sec Start 25: test_canonstable_1 22/208 Test #24: test_canonfragment_1 ............. Passed 0.02 sec Start 26: test_carspacegroup_1 23/208 Test #26: test_carspacegroup_1 ............. Passed 0.02 sec Start 27: test_carspacegroup_2 24/208 Test #21: test_canonconsistent_1 ........... Passed 0.11 sec Start 28: test_carspacegroup_3 25/208 Test #27: test_carspacegroup_2 ............. Passed 0.12 sec Start 29: test_carspacegroup_4 26/208 Test #28: test_carspacegroup_3 ............. Passed 0.12 sec Start 30: test_cifspacegroup_1 27/208 Test #29: test_carspacegroup_4 ............. Passed 0.12 sec Start 31: test_cifspacegroup_2 28/208 Test #30: test_cifspacegroup_1 ............. Passed 0.12 sec Start 32: test_cifspacegroup_3 29/208 Test #32: test_cifspacegroup_3 ............. Passed 0.00 sec Start 33: test_cifspacegroup_4 30/208 Test #31: test_cifspacegroup_2 ............. Passed 0.12 sec Start 34: test_cifspacegroup_5 31/208 Test #33: test_cifspacegroup_4 ............. Passed 0.12 sec Start 35: test_cifspacegroup_6 32/208 Test #34: test_cifspacegroup_5 ............. Passed 0.12 sec Start 36: test_cifspacegroup_7 33/208 Test #35: test_cifspacegroup_6 ............. Passed 0.12 sec Start 37: test_cifspacegroup_8 34/208 Test #36: test_cifspacegroup_7 ............. Passed 0.12 sec Start 38: test_cifspacegroup_9 35/208 Test #37: test_cifspacegroup_8 ............. Passed 0.13 sec Start 39: test_cifspacegroup_10 36/208 Test #38: test_cifspacegroup_9 ............. Passed 0.12 sec Start 40: test_cifspacegroup_11 37/208 Test #39: test_cifspacegroup_10 ............ Passed 0.12 sec Start 41: test_cifspacegroup_12 38/208 Test #40: test_cifspacegroup_11 ............ Passed 0.12 sec Start 42: test_cifspacegroup_13 39/208 Test #41: test_cifspacegroup_12 ............ Passed 0.12 sec Start 43: test_cistrans_1 40/208 Test #43: test_cistrans_1 .................. Passed 0.00 sec Start 44: test_cistrans_2 41/208 Test #44: test_cistrans_2 .................. Passed 0.00 sec Start 45: test_cistrans_3 42/208 Test #45: test_cistrans_3 .................. Passed 0.00 sec Start 46: test_cistrans_4 43/208 Test #46: test_cistrans_4 .................. Passed 0.00 sec Start 47: test_cistrans_5 44/208 Test #47: test_cistrans_5 .................. Passed 0.00 sec Start 48: test_cistrans_6 45/208 Test #42: test_cifspacegroup_13 ............ Passed 0.05 sec Start 49: test_cistrans_7 46/208 Test #48: test_cistrans_6 .................. Passed 0.02 sec Start 50: test_cistrans_8 47/208 Test #49: test_cistrans_7 .................. Passed 0.02 sec Start 51: test_cistrans_9 48/208 Test #50: test_cistrans_8 .................. Passed 0.02 sec Start 52: test_conversion_1 49/208 Test #51: test_cistrans_9 .................. Passed 0.02 sec Start 53: test_graphsym_1 50/208 Test #52: test_conversion_1 ................ Passed 0.02 sec Start 54: test_graphsym_2 51/208 Test #53: test_graphsym_1 .................. Passed 0.02 sec Start 55: test_graphsym_3 52/208 Test #54: test_graphsym_2 .................. Passed 0.02 sec Start 56: test_graphsym_4 53/208 Test #55: test_graphsym_3 .................. Passed 0.02 sec Start 57: test_graphsym_5 54/208 Test #56: test_graphsym_4 .................. Passed 0.02 sec Start 58: test_gzip_1 55/208 Test #57: test_graphsym_5 .................. Passed 0.02 sec Start 59: test_addh_1 56/208 Test #58: test_gzip_1 ...................... Passed 0.11 sec Start 60: test_implicitH_1 57/208 Test #60: test_implicitH_1 ................. Passed 0.02 sec Start 61: test_lssr_1 58/208 Test #61: test_lssr_1 ...................... Passed 0.05 sec Start 62: test_lssr_2 59/208 Test #15: test_builder_1 ................... Passed 2.13 sec Start 63: test_lssr_3 60/208 Test #62: test_lssr_2 ...................... Passed 0.99 sec Start 64: test_lssr_4 61/208 Test #63: test_lssr_3 ...................... Passed 0.34 sec Start 65: test_lssr_5 62/208 Test #65: test_lssr_5 ...................... Passed 0.03 sec Start 66: test_isomorphism_1 63/208 Test #66: test_isomorphism_1 ............... Passed 0.02 sec Start 67: test_isomorphism_2 64/208 Test #67: test_isomorphism_2 ............... Passed 0.02 sec Start 68: test_isomorphism_3 65/208 Test #68: test_isomorphism_3 ............... Passed 0.02 sec Start 69: test_isomorphism_4 66/208 Test #69: test_isomorphism_4 ............... Passed 0.02 sec Start 70: test_isomorphism_5 67/208 Test #70: test_isomorphism_5 ............... Passed 0.02 sec Start 71: test_isomorphism_6 68/208 Test #71: test_isomorphism_6 ............... Passed 0.02 sec Start 72: test_isomorphism_7 69/208 Test #72: test_isomorphism_7 ............... Passed 0.02 sec Start 73: test_isomorphism_8 70/208 Test #73: test_isomorphism_8 ............... Passed 0.02 sec Start 74: test_isomorphism_9 71/208 Test #74: test_isomorphism_9 ............... Passed 0.02 sec Start 75: test_multicml_1 72/208 Test #75: test_multicml_1 .................. Passed 0.02 sec Start 76: test_periodic_1 73/208 Test #76: test_periodic_1 .................. Passed 0.00 sec Start 77: test_periodic_2 74/208 Test #77: test_periodic_2 .................. Passed 0.00 sec Start 78: test_periodic_3 75/208 Test #64: test_lssr_4 ...................... Passed 0.38 sec Start 79: test_periodic_4 76/208 Test #79: test_periodic_4 .................. Passed 0.00 sec Start 80: test_regressions_222 77/208 Test #78: test_periodic_3 .................. Passed 0.03 sec Start 81: test_regressions_223 78/208 Test #80: test_regressions_222 ............. Passed 0.03 sec Start 82: test_regressions_224 79/208 Test #81: test_regressions_223 ............. Passed 0.02 sec Start 83: test_rotor_1 80/208 Test #83: test_rotor_1 ..................... Passed 0.00 sec Start 84: test_rotor_2 81/208 Test #82: test_regressions_224 ............. Passed 0.03 sec Start 85: test_rotor_3 82/208 Test #84: test_rotor_2 ..................... Passed 0.03 sec Start 86: test_rotor_4 83/208 Test #85: test_rotor_3 ..................... Passed 0.02 sec Start 87: test_shuffle_1 84/208 Test #86: test_rotor_4 ..................... Passed 0.03 sec Start 88: test_shuffle_2 85/208 Test #87: test_shuffle_1 ................... Passed 0.14 sec Start 89: test_shuffle_3 86/208 Test #89: test_shuffle_3 ................... Passed 0.06 sec Start 90: test_shuffle_4 87/208 Test #88: test_shuffle_2 ................... Passed 0.18 sec Start 91: test_shuffle_5 88/208 Test #90: test_shuffle_4 ................... Passed 0.03 sec Start 92: test_smiles_1 89/208 Test #92: test_smiles_1 .................... Passed 0.02 sec Start 93: test_smiles_2 90/208 Test #91: test_shuffle_5 ................... Passed 0.07 sec Start 94: test_smiles_3 91/208 Test #93: test_smiles_2 .................... Passed 0.02 sec Start 95: test_spectrophore_1 92/208 Test #94: test_smiles_3 .................... Passed 0.02 sec Start 96: test_spectrophore_2 93/208 Test #96: test_spectrophore_2 .............. Passed 0.01 sec Start 97: test_spectrophore_3 94/208 Test #97: test_spectrophore_3 .............. Passed 0.01 sec Start 98: test_spectrophore_4 95/208 Test #98: test_spectrophore_4 .............. Passed 0.01 sec Start 99: test_spectrophore_5 96/208 Test #99: test_spectrophore_5 .............. Passed 0.01 sec Start 100: test_squareplanar_1 97/208 Test #100: test_squareplanar_1 .............. Passed 0.00 sec Start 101: test_squareplanar_2 98/208 Test #101: test_squareplanar_2 .............. Passed 0.00 sec Start 102: test_squareplanar_3 99/208 Test #102: test_squareplanar_3 .............. Passed 0.00 sec Start 103: test_squareplanar_4 100/208 Test #103: test_squareplanar_4 .............. Passed 0.00 sec Start 104: test_squareplanar_5 101/208 Test #104: test_squareplanar_5 .............. Passed 0.00 sec Start 105: test_stereo_1 102/208 Test #105: test_stereo_1 .................... Passed 0.00 sec Start 106: test_stereo_2 103/208 Test #106: test_stereo_2 .................... Passed 0.00 sec Start 107: test_stereo_3 104/208 Test #107: test_stereo_3 .................... Passed 0.00 sec Start 108: test_stereo_4 105/208 Test #108: test_stereo_4 .................... Passed 0.00 sec Start 109: test_stereo_5 106/208 Test #109: test_stereo_5 .................... Passed 0.00 sec Start 110: test_stereo_6 107/208 Test #95: test_spectrophore_1 .............. Passed 0.15 sec Start 111: test_stereoperception_1 108/208 Test #111: test_stereoperception_1 .......... Passed 0.02 sec Start 112: test_stereoperception_2 109/208 Test #110: test_stereo_6 .................... Passed 0.08 sec Start 113: test_stereoperception_3 110/208 Test #112: test_stereoperception_2 .......... Passed 0.03 sec Start 114: test_stereoperception_4 111/208 Test #113: test_stereoperception_3 .......... Passed 0.02 sec Start 115: test_tautomer_1 112/208 Test #114: test_stereoperception_4 .......... Passed 0.02 sec Start 116: test_tautomer_2 113/208 Test #115: test_tautomer_1 .................. Passed 0.02 sec Start 117: test_tautomer_3 114/208 Test #116: test_tautomer_2 .................. Passed 0.03 sec Start 118: test_tautomer_4 115/208 Test #118: test_tautomer_4 .................. Passed 0.02 sec Start 119: test_tautomer_5 116/208 Test #117: test_tautomer_3 .................. Passed 0.04 sec Start 120: test_tautomer_6 117/208 Test #119: test_tautomer_5 .................. Passed 0.02 sec Start 121: test_tautomer_7 118/208 Test #120: test_tautomer_6 .................. Passed 0.03 sec Start 122: test_tautomer_8 119/208 Test #121: test_tautomer_7 .................. Passed 0.02 sec Start 123: test_tautomer_9 120/208 Test #122: test_tautomer_8 .................. Passed 0.03 sec Start 124: test_tautomer_10 121/208 Test #123: test_tautomer_9 .................. Passed 0.02 sec Start 125: test_tautomer_11 122/208 Test #124: test_tautomer_10 ................. Passed 0.04 sec Start 126: test_tautomer_12 123/208 Test #125: test_tautomer_11 ................. Passed 0.04 sec Start 127: test_tautomer_13 124/208 Test #126: test_tautomer_12 ................. Passed 0.02 sec Start 128: test_tautomer_14 125/208 Test #127: test_tautomer_13 ................. Passed 0.02 sec Start 129: test_tautomer_15 126/208 Test #128: test_tautomer_14 ................. Passed 0.02 sec Start 130: test_tautomer_16 127/208 Test #25: test_canonstable_1 ............... Passed 3.37 sec Start 131: test_tautomer_17 128/208 Test #129: test_tautomer_15 ................. Passed 0.03 sec Start 132: test_tautomer_18 129/208 Test #132: test_tautomer_18 ................. Passed 0.02 sec Start 133: test_tautomer_19 130/208 Test #130: test_tautomer_16 ................. Passed 0.04 sec Start 134: test_tautomer_20 131/208 Test #131: test_tautomer_17 ................. Passed 0.03 sec Start 135: test_tautomer_21 132/208 Test #133: test_tautomer_19 ................. Passed 0.02 sec Start 136: test_tautomer_22 133/208 Test #134: test_tautomer_20 ................. Passed 0.04 sec Start 137: test_tautomer_23 134/208 Test #135: test_tautomer_21 ................. Passed 0.03 sec Start 138: test_tautomer_24 135/208 Test #136: test_tautomer_22 ................. Passed 0.02 sec Start 139: test_tautomer_25 136/208 Test #138: test_tautomer_24 ................. Passed 0.02 sec Start 140: test_tautomer_26 137/208 Test #139: test_tautomer_25 ................. Passed 0.02 sec Start 141: test_tautomer_27 138/208 Test #137: test_tautomer_23 ................. Passed 0.03 sec Start 142: test_tautomer_28 139/208 Test #140: test_tautomer_26 ................. Passed 0.02 sec Start 143: test_tetrahedral_1 140/208 Test #143: test_tetrahedral_1 ............... Passed 0.00 sec Start 144: test_tetrahedral_2 141/208 Test #144: test_tetrahedral_2 ............... Passed 0.00 sec Start 145: test_tetrahedral_3 142/208 Test #145: test_tetrahedral_3 ............... Passed 0.00 sec Start 146: test_tetrahedral_4 143/208 Test #146: test_tetrahedral_4 ............... Passed 0.00 sec Start 147: test_tetrahedral_5 144/208 Test #141: test_tautomer_27 ................. Passed 0.04 sec Start 148: test_tetranonplanar_1 145/208 Test #147: test_tetrahedral_5 ............... Passed 0.00 sec Start 149: test_tetraplanar_1 146/208 Test #148: test_tetranonplanar_1 ............ Passed 0.00 sec Start 150: test_uniqueid_1 147/208 Test #149: test_tetraplanar_1 ............... Passed 0.01 sec Start 151: test_uniqueid_2 148/208 Test #142: test_tautomer_28 ................. Passed 0.04 sec Start 152: test_aromatest_1 149/208 Test #150: test_uniqueid_1 .................. Passed 0.01 sec Start 153: test_atom_1 150/208 Test #151: test_uniqueid_2 .................. Passed 0.00 sec Start 154: test_atom_2 151/208 Test #153: test_atom_1 ...................... Passed 0.00 sec Start 155: test_atom_3 152/208 Test #154: test_atom_2 ...................... Passed 0.00 sec Start 156: test_atom_4 153/208 Test #155: test_atom_3 ...................... Passed 0.00 sec Start 157: test_bond_1 154/208 Test #156: test_atom_4 ...................... Passed 0.00 sec Start 158: test_cansmi_1 155/208 Test #157: test_bond_1 ...................... Passed 0.00 sec Start 159: test_charge_mmff94_1 156/208 Test #152: test_aromatest_1 ................. Passed 0.03 sec Start 160: test_charge_gasteiger_1 157/208 Test #160: test_charge_gasteiger_1 .......... Passed 0.04 sec Start 161: test_datatest_1 158/208 Test #161: test_datatest_1 .................. Passed 0.00 sec Start 162: test_ffgaff_1 159/208 Test #159: test_charge_mmff94_1 ............. Passed 0.08 sec Start 163: test_ffghemical_1 160/208 Test #158: test_cansmi_1 .................... Passed 0.17 sec Start 164: test_ffmmff94_1 161/208 Test #162: test_ffgaff_1 .................... Passed 0.34 sec Start 165: test_ffmmff94_2 162/208 Test #165: test_ffmmff94_2 .................. Passed 0.06 sec Start 166: test_ffmmff94_3 163/208 Test #164: test_ffmmff94_1 .................. Passed 0.39 sec Start 167: test_ffmmff94_4 164/208 Test #163: test_ffghemical_1 ................ Passed 0.50 sec Start 168: test_ffmmff94_5 165/208 Test #167: test_ffmmff94_4 .................. Passed 0.07 sec Start 169: test_ffmmff94_6 166/208 Test #169: test_ffmmff94_6 .................. Passed 0.00 sec Start 170: test_ffuff_1 167/208 Test #166: test_ffmmff94_3 .................. Passed 0.39 sec Start 171: test_formalcharge_1 168/208 Test #171: test_formalcharge_1 .............. Passed 0.03 sec Start 172: test_format_1 169/208 Test #172: test_format_1 .................... Passed 0.02 sec Start 173: test_formula_1 170/208 Test #170: test_ffuff_1 ..................... Passed 0.29 sec Start 174: test_internalcoord_1 171/208 Test #174: test_internalcoord_1 ............. Passed 0.00 sec Start 175: test_invalidsmarts_1 172/208 Test #175: test_invalidsmarts_1 ............. Passed 0.00 sec Start 176: test_invalidsmiles_1 173/208 Test #176: test_invalidsmiles_1 ............. Passed 0.00 sec Start 177: test_iterators_1 174/208 Test #173: test_formula_1 ................... Passed 0.04 sec Start 178: test_logp_psa_1 175/208 Test #168: test_ffmmff94_5 .................. Passed 0.39 sec Start 179: test_math_1 176/208 Test #178: test_logp_psa_1 .................. Passed 0.04 sec Start 180: test_math_2 177/208 Test #177: test_iterators_1 ................. Passed 0.05 sec Start 181: test_math_3 178/208 Test #181: test_math_3 ...................... Passed 0.01 sec Start 182: test_math_4 179/208 Test #180: test_math_2 ...................... Passed 0.03 sec Start 183: test_mol_1 180/208 Test #179: test_math_1 ...................... Passed 0.03 sec Start 184: test_pdbreadfile_1 181/208 Test #182: test_math_4 ...................... Passed 0.02 sec Start 185: test_pdbreadfile_2 182/208 Test #183: test_mol_1 ....................... Passed 0.02 sec Start 186: test_pdbreadfile_3 183/208 Test #184: test_pdbreadfile_1 ............... Passed 0.02 sec Start 187: test_pdbreadfile_4 184/208 Test #185: test_pdbreadfile_2 ............... Passed 0.02 sec Start 188: test_phmodel_1 185/208 Test #186: test_pdbreadfile_3 ............... Passed 0.02 sec Start 189: test_residue_1 186/208 Test #59: test_addh_1 ...................... Passed 3.53 sec Start 190: test_ringtest_1 187/208 Test #187: test_pdbreadfile_4 ............... Passed 0.02 sec Start 191: test_smartstest_1 188/208 Test #188: test_phmodel_1 ................... Passed 0.02 sec Start 192: test_smartsparse_1 189/208 Test #192: test_smartsparse_1 ............... Passed 0.01 sec Start 193: test_smilesmatch_1 190/208 Test #189: test_residue_1 ................... Passed 0.02 sec Start 194: test_unitcell_1 191/208 Test #194: test_unitcell_1 .................. Passed 0.01 sec Start 195: test_cmlreadfile_1 192/208 Test #190: test_ringtest_1 .................. Passed 0.04 sec Start 196: inchiSamples.sdf_Test 193/208 Test #195: test_cmlreadfile_1 ............... Passed 0.02 sec Start 197: inchiSamplesTechMan.sdf_Test 194/208 Test #191: test_smartstest_1 ................ Passed 0.06 sec Start 198: pytest_babel 195/208 Test #197: inchiSamplesTechMan.sdf_Test ..... Passed 0.04 sec Start 199: pytest_smartssym 196/208 Test #196: inchiSamples.sdf_Test ............ Passed 0.07 sec Start 200: pytest_fastsearch 197/208 Test #193: test_smilesmatch_1 ............... Passed 0.22 sec Start 201: pytest_unique 198/208 Test #200: pytest_fastsearch ................ Passed 0.14 sec Start 202: pytest_kekule 199/208 Test #201: pytest_unique .................... Passed 0.27 sec Start 203: pytest_pdbformat 200/208 Test #203: pytest_pdbformat ................. Passed 0.08 sec Start 204: pybindtest__pybel 201/208 Test #202: pytest_kekule .................... Passed 0.50 sec Start 205: pybindtest_example 202/208 Test #205: pybindtest_example ............... Passed 0.11 sec Start 206: pybindtest_cdjsonformat 203/208 Test #204: pybindtest__pybel ................ Passed 0.36 sec Start 207: pybindtest_pcjsonformat 204/208 Test #199: pytest_smartssym ................. Passed 0.87 sec Start 208: pybindtest_roundtrip 205/208 Test #206: pybindtest_cdjsonformat .......... Passed 0.12 sec 206/208 Test #207: pybindtest_pcjsonformat .......... Passed 0.13 sec 207/208 Test #198: pytest_babel ..................... Passed 2.49 sec 208/208 Test #208: pybindtest_roundtrip ............. Passed 172.12 sec 100% tests passed, 0 tests failed out of 208 Total Test time (real) = 177.94 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: openbabel-3.1.1-39.fc44.aarch64 warning: File listed twice: /usr/lib/.build-id/a5/3de1c777d0d10d062cfaaaf43262c9f26109c2 Provides: config(openbabel) = 3.1.1-39.fc44 openbabel = 3.1.1-39.fc44 openbabel(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: openbabel-devel-3.1.1-39.fc44.aarch64 Provides: cmake(OpenBabel3) = 3.1.1 cmake(openbabel3) = 3.1.1 openbabel-devel = 3.1.1-39.fc44 openbabel-devel(aarch-64) = 3.1.1-39.fc44 pkgconfig(openbabel-3) = 3.1.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem(aarch-64) libopenbabel.so.7()(64bit) Processing files: openbabel-doc-3.1.1-39.fc44.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.IxyNn0 + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + DOCDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/FAQ.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/OBTwoMigration.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/OpenBabelGUI.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/api-footer.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/api-header.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/README.dioxin.pov /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/README.povray /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.inc /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.mol2 /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.png /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.pov /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: openbabel-doc = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: openbabel-gui-3.1.1-39.fc44.aarch64 Provides: application() application(obgui.desktop) openbabel-gui = 3.1.1-39.fc44 openbabel-gui(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libwx_baseu-3.2.so.0()(64bit) libwx_baseu-3.2.so.0(WXU_3.2)(64bit) libwx_gtk3u_core-3.2.so.0()(64bit) libwx_gtk3u_core-3.2.so.0(WXU_3.2)(64bit) rtld(GNU_HASH) Processing files: openbabel-libs-3.1.1-39.fc44.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Q5Y8es + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + DOCDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/THANKS /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/AUTHORS /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/authors.txt /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/README.md /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.W3rPOl + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + LICENSEDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/COPYING /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libopenbabel.so.7()(64bit) openbabel-libs = 3.1.1-39.fc44 openbabel-libs(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.5.0)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.5)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: perl-openbabel-3.1.1-39.fc44.aarch64 Provides: perl(Chemistry::OpenBabel) perl(Chemistry::OpenBabel::AliasData) perl(Chemistry::OpenBabel::CharPtrLess) perl(Chemistry::OpenBabel::Dummy) perl(Chemistry::OpenBabel::LineSearchType) perl(Chemistry::OpenBabel::OBAngle) perl(Chemistry::OpenBabel::OBAngleData) perl(Chemistry::OpenBabel::OBAtom) perl(Chemistry::OpenBabel::OBAtomAtomIter) perl(Chemistry::OpenBabel::OBAtomBondIter) perl(Chemistry::OpenBabel::OBAtomHOF) perl(Chemistry::OpenBabel::OBAtomicHeatOfFormationTable) perl(Chemistry::OpenBabel::OBBase) perl(Chemistry::OpenBabel::OBBitVec) perl(Chemistry::OpenBabel::OBBond) perl(Chemistry::OpenBabel::OBBuilder) perl(Chemistry::OpenBabel::OBCommentData) perl(Chemistry::OpenBabel::OBConformerData) perl(Chemistry::OpenBabel::OBConversion) perl(Chemistry::OpenBabel::OBDOSData) perl(Chemistry::OpenBabel::OBDescriptor) perl(Chemistry::OpenBabel::OBElectronicTransitionData) perl(Chemistry::OpenBabel::OBError) perl(Chemistry::OpenBabel::OBExternalBond) perl(Chemistry::OpenBabel::OBExternalBondData) perl(Chemistry::OpenBabel::OBFFCalculation2) perl(Chemistry::OpenBabel::OBFFCalculation3) perl(Chemistry::OpenBabel::OBFFCalculation4) perl(Chemistry::OpenBabel::OBFFConstraint) perl(Chemistry::OpenBabel::OBFFConstraints) perl(Chemistry::OpenBabel::OBFFParameter) perl(Chemistry::OpenBabel::OBFingerprintIter) perl(Chemistry::OpenBabel::OBForceField) perl(Chemistry::OpenBabel::OBFormat) perl(Chemistry::OpenBabel::OBFreeGrid) perl(Chemistry::OpenBabel::OBFreeGridPoint) perl(Chemistry::OpenBabel::OBGenericData) perl(Chemistry::OpenBabel::OBGlobalDataBase) perl(Chemistry::OpenBabel::OBGridData) perl(Chemistry::OpenBabel::OBInternalCoord) perl(Chemistry::OpenBabel::OBMatrixData) perl(Chemistry::OpenBabel::OBMessageHandler) perl(Chemistry::OpenBabel::OBMol) perl(Chemistry::OpenBabel::OBMolAngleIter) perl(Chemistry::OpenBabel::OBMolAtomBFSIter) perl(Chemistry::OpenBabel::OBMolAtomDFSIter) perl(Chemistry::OpenBabel::OBMolAtomIter) perl(Chemistry::OpenBabel::OBMolBondBFSIter) perl(Chemistry::OpenBabel::OBMolBondIter) perl(Chemistry::OpenBabel::OBMolPairIter) perl(Chemistry::OpenBabel::OBMolRingIter) perl(Chemistry::OpenBabel::OBMolTorsionIter) perl(Chemistry::OpenBabel::OBOp) perl(Chemistry::OpenBabel::OBOrbital) perl(Chemistry::OpenBabel::OBOrbitalData) perl(Chemistry::OpenBabel::OBPairData) perl(Chemistry::OpenBabel::OBPcharge) perl(Chemistry::OpenBabel::OBPlugin) perl(Chemistry::OpenBabel::OBRTree) perl(Chemistry::OpenBabel::OBResidue) perl(Chemistry::OpenBabel::OBResidueAtomIter) perl(Chemistry::OpenBabel::OBResidueData) perl(Chemistry::OpenBabel::OBResidueIter) perl(Chemistry::OpenBabel::OBRing) perl(Chemistry::OpenBabel::OBRingData) perl(Chemistry::OpenBabel::OBRingSearch) perl(Chemistry::OpenBabel::OBRotamerList) perl(Chemistry::OpenBabel::OBRotationData) perl(Chemistry::OpenBabel::OBRotor) perl(Chemistry::OpenBabel::OBRotorKeys) perl(Chemistry::OpenBabel::OBRotorList) perl(Chemistry::OpenBabel::OBRotorRule) perl(Chemistry::OpenBabel::OBRotorRules) perl(Chemistry::OpenBabel::OBSSMatch) perl(Chemistry::OpenBabel::OBSerialNums) perl(Chemistry::OpenBabel::OBSetData) perl(Chemistry::OpenBabel::OBSmartsMatcher) perl(Chemistry::OpenBabel::OBSmartsPattern) perl(Chemistry::OpenBabel::OBSqrtTbl) perl(Chemistry::OpenBabel::OBStopwatch) perl(Chemistry::OpenBabel::OBSymmetryData) perl(Chemistry::OpenBabel::OBTorsion) perl(Chemistry::OpenBabel::OBTorsionData) perl(Chemistry::OpenBabel::OBTypeTable) perl(Chemistry::OpenBabel::OBUnitCell) perl(Chemistry::OpenBabel::OBVectorData) perl(Chemistry::OpenBabel::OBVibrationData) perl(Chemistry::OpenBabel::OBVirtualBond) perl(Chemistry::OpenBabel::VectorDouble) perl(Chemistry::OpenBabel::VectorInt) perl(Chemistry::OpenBabel::VectorOBBond) perl(Chemistry::OpenBabel::VectorOBMol) perl(Chemistry::OpenBabel::VectorOBResidue) perl(Chemistry::OpenBabel::VectorOBRing) perl(Chemistry::OpenBabel::VectorString) perl(Chemistry::OpenBabel::VectorUnsignedInt) perl(Chemistry::OpenBabel::VectorVInt) perl(Chemistry::OpenBabel::VectorVector3) perl(Chemistry::OpenBabel::VectorpOBGenericData) perl(Chemistry::OpenBabel::VectorpOBRing) perl(Chemistry::OpenBabel::_OBAtomAtomIter) perl(Chemistry::OpenBabel::_OBAtomBondIter) perl(Chemistry::OpenBabel::_OBMolAngleIter) perl(Chemistry::OpenBabel::_OBMolAtomBFSIter) perl(Chemistry::OpenBabel::_OBMolAtomDFSIter) perl(Chemistry::OpenBabel::_OBMolAtomIter) perl(Chemistry::OpenBabel::_OBMolBondIter) perl(Chemistry::OpenBabel::_OBMolPairIter) perl(Chemistry::OpenBabel::_OBMolRingIter) perl(Chemistry::OpenBabel::_OBMolTorsionIter) perl(Chemistry::OpenBabel::_OBResidueAtomIter) perl(Chemistry::OpenBabel::matrix3x3) perl(Chemistry::OpenBabel::obLogBuf) perl(Chemistry::OpenBabel::rotor_digit) perl(Chemistry::OpenBabel::stringbuf) perl(Chemistry::OpenBabel::vector3) perl(Chemistry::OpenBabelc) perl-openbabel = 3.1.1-39.fc44 perl-openbabel(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenbabel.so.7()(64bit) libperl.so.5.42()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(:MODULE_COMPAT_5.42.0) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) perl-libs rtld(GNU_HASH) Processing files: python3-openbabel-3.1.1-39.fc44.aarch64 Provides: python-openbabel = 3.1.1-39.fc44 python3-openbabel = 3.1.1-39.fc44 python3-openbabel(aarch-64) = 3.1.1-39.fc44 python3.14-openbabel = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenbabel.so.7()(64bit) libpython3.14.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.14 rtld(GNU_HASH) Obsoletes: python-openbabel < 3.1.1-39.fc44 python2-openbabel < 0:3.1.1-39.fc44 Processing files: ruby-openbabel-3.1.1-39.fc44.aarch64 Provides: ruby-openbabel = 3.1.1-39.fc44 ruby-openbabel(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenbabel.so.7()(64bit) libruby.so.3.4()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: openbabel-debugsource-3.1.1-39.fc44.aarch64 Provides: openbabel-debugsource = 3.1.1-39.fc44 openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: openbabel-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = 033b079ee0b0948fe48c20e55eb583ef522be575 debuginfo(build-id) = 0b88fa9478d22db080d4f0f1866453b169e6514b debuginfo(build-id) = 24e3dd7c76ad702f7ca69ef05a5876b4738cb603 debuginfo(build-id) = 32e4d82782a9bd4cc347f13dc295bf70ec4313a7 debuginfo(build-id) = 32f6076f4c8c6664c101e19b52082409d88820ab debuginfo(build-id) = 4759854769966424b344dab3c6b459908d584fbb debuginfo(build-id) = 487d13acae24b604efb153491a7f8ae047b4a04b debuginfo(build-id) = 4fb294b9c9471508020dd77939d56a47f360389a debuginfo(build-id) = 4fb50f88713215293656911a5b68f7ed333098cb debuginfo(build-id) = 7148d28fd66d70c925f4be080013e770f30bca53 debuginfo(build-id) = 7eb1ede1524abef85c3e47feccee8f9714ecc0c4 debuginfo(build-id) = 8494380962ff48fb144941f02d1a7e6d61fc87a3 debuginfo(build-id) = 919c2345368a0d8a625a319f8ed0975a93c68bf6 debuginfo(build-id) = 94746500d88667843ca0b54bc10c45a2a7980a43 debuginfo(build-id) = a40fde7c57973112f62c262fb415819c7cfcea9c debuginfo(build-id) = a53de1c777d0d10d062cfaaaf43262c9f26109c2 debuginfo(build-id) = d8a0dd9073fe05f153c124079aa90a89add1e057 debuginfo(build-id) = dce08ece6b583eec61714697b1605a154241eb83 debuginfo(build-id) = ecebdecf73dfd82bc13d77c9d1f1b64b5dcb41f3 debuginfo(build-id) = f7e73d083d05e74ab674c046c80651427c0e43e4 debuginfo(build-id) = fc0cc61d24956ca5915cbeb1d1d1b175f7bc1c69 openbabel-debuginfo = 3.1.1-39.fc44 openbabel-debuginfo(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Processing files: openbabel-gui-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = a53de1c777d0d10d062cfaaaf43262c9f26109c2 openbabel-gui-debuginfo = 3.1.1-39.fc44 openbabel-gui-debuginfo(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Processing files: openbabel-libs-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = 04d97c1f1e69a40901abb5d8479a90c4d6f0c14a debuginfo(build-id) = 0a593c3d069c8bfbf66a94237ace6b29daf422f2 debuginfo(build-id) = 0cba37b9a915b080b398e06138611542ffc05f8b debuginfo(build-id) = 11f41950314b18fe4ec6b265fd39bf90f5a22ec2 debuginfo(build-id) = 13b7022d42883bc06fe6bf68622c9806398dd7ec debuginfo(build-id) = 1533694376d9f45f29cb05e435ab0f002c54abe8 debuginfo(build-id) = 193239bb22726c9f184acaed1122f24119021150 debuginfo(build-id) = 19cd5b3695bdb8249b565a555c2ce1dba0535e60 debuginfo(build-id) = 1ab26cd7a00321f6c4575ea57ad56d2e92cd94ee debuginfo(build-id) = 1c05537f1bec6eac09e0f06800f89f9a6d344daa debuginfo(build-id) = 1c3e03f9e814114d850527a81a8915f545ac1d12 debuginfo(build-id) = 20e7fbc0a36b91185df86a44174ddbac371084e0 debuginfo(build-id) = 23a0c3d19d34244bb06bce074975dfbd35c87072 debuginfo(build-id) = 26c5a1a1ad4c27a55716bd6336040bb9bc2cb766 debuginfo(build-id) = 27188d8cf67d474cfd68606e062cd0bcf48bed05 debuginfo(build-id) = 28a7f81941d236b756ba050e4da70fcc1d252f7c debuginfo(build-id) = 28fdecd22e4e0303b4d78ceafeb0dca5260d6a7f debuginfo(build-id) = 2abc2c3666664e7d91c28dfafe104c99099ea98c debuginfo(build-id) = 2bfb2a18b13e6bdcaeb743d46a7d92ee33b20d8a debuginfo(build-id) = 3213e98201e0600382c3553697b8d15d8407a928 debuginfo(build-id) = 33989f00d73bbe7c29029b3405a4fafd3deaee35 debuginfo(build-id) = 39f0d8529d8274da6df3623ef6a8a5b2ca541347 debuginfo(build-id) = 3bb1d8107b33b0251f99ce3cbf056c6582c23284 debuginfo(build-id) = 3c1941ff507fb40e74e531edae0e11b899ae2830 debuginfo(build-id) = 3decdfd9604df3c916bc5d10a37d9790abe2e00b debuginfo(build-id) = 3e6462d2ca2affcaa6a6bf43bb0f7d3ad0de27b9 debuginfo(build-id) = 41b2367d76f61033357a643c167175eb3f64b8ed debuginfo(build-id) = 4645c66539bf7abe6274232a8dd9b0d542994079 debuginfo(build-id) = 49bc76f9ce639102bbd51f4d4e51a5328fe62ce6 debuginfo(build-id) = 4ac432b342059d6ccec0dd100ca80498c7324fd5 debuginfo(build-id) = 4fe39acd0477b3c97378026eeee2719942bef502 debuginfo(build-id) = 50bb7de6accf1338217d34844ab4af177d3ffa8e debuginfo(build-id) = 515dac315fb97b85ccb28ef91371b028c3e2016f debuginfo(build-id) = 554fa0bb4c2ad40e420ad1c00b89dbb05b80035d debuginfo(build-id) = 55a3b96c536d288822002d03a4ae822b0d3e482f debuginfo(build-id) = 55d697d161dfd7ed533e1f4c381be82fd1b5a842 debuginfo(build-id) = 57a1467fb50b3ec541c90101605154ba89d7f93d debuginfo(build-id) = 581299b97298e759d6802d99ccd5e30cedac8336 debuginfo(build-id) = 5851c9529b56279d56b2f372763c949494297576 debuginfo(build-id) = 58734383ad0915eaca85aae455df752871aa9655 debuginfo(build-id) = 5886e01a78ff7bdc0b3ab74f054f79a9ab6d00fd debuginfo(build-id) = 59ab16d7a462a6371bdf5496749b857f6bb1cc3e debuginfo(build-id) = 5bc8ec9313ee17d063198c9644db43ff58268acf debuginfo(build-id) = 5d5dd5abb7fe2a40c1069d5a677504e57b769983 debuginfo(build-id) = 5f8cdbd16d2b213bca35d023f62d4e58c8d9ea1c debuginfo(build-id) = 600fdb186c7881e0dd70b54f161291a03dc7c068 debuginfo(build-id) = 6092ae8589799eb6fc0ab272bc202d58391a4990 debuginfo(build-id) = 6205a108668b0bd5ecef9d626250791dc382c737 debuginfo(build-id) = 631d33266da3ef4003c953c201605d536d53a737 debuginfo(build-id) = 6390c37c5a1d7f3be4968f81d684a54e06c169f5 debuginfo(build-id) = 63a7bdaf57b7fbaa8ba11d014dea9c425d3f36b7 debuginfo(build-id) = 64171f63af5ea0bd9c9f2f0dd39201384b9a02b3 debuginfo(build-id) = 6a747ce9ccccdfcc18a563c1bdcfa5be16338c67 debuginfo(build-id) = 6a9acf1dca72d5c12f201395d0104eeb80dc6c41 debuginfo(build-id) = 6dc9b8a7b769e52694579629e57a95eb57f9260b debuginfo(build-id) = 6eb5a93ce3ba4fae7f290374e09fe36181e8466d debuginfo(build-id) = 6ebbdb6d6c1c07917f24331e5deb247fea0673ce debuginfo(build-id) = 7857889bf2b170ca0b5b4b4833ea2944b58098de debuginfo(build-id) = 78cf43391739e2882cac9e3f35a74f3b43c80089 debuginfo(build-id) = 790d32a616b2fcf43b77b4d677a822a67d0aaabd debuginfo(build-id) = 7a2d24e8f9c8e8cd928a1350805e7d9c2f0cb51d debuginfo(build-id) = 7b1d02a0b8d2d7e541afcf476b6839ec3f76c7de debuginfo(build-id) = 7d7587f8126c8a5cdf1d4c4b62cd87c523f77d8e debuginfo(build-id) = 7e63302ced394997044a5ad0fca92de96c4525e2 debuginfo(build-id) = 7e6395a4adf63a43c9371712d491cf28a778c679 debuginfo(build-id) = 7f8b915bd5e2213f2ceec5dd00593a93b9740024 debuginfo(build-id) = 8c7a333bf29518500a2d0f4c3635a3d88e734116 debuginfo(build-id) = 8db5c1ce9c712343c92030a1c609a4aeb0df57eb debuginfo(build-id) = 95363d7bcfd3c2d8ead340801275476d9f1910d7 debuginfo(build-id) = 992ad8125f95a4e36dc1ecd7851c25bb62c9d307 debuginfo(build-id) = 9a299d0c009c7fb9b8579adaaad3020fb0de5967 debuginfo(build-id) = 9aaf63012304fb162058b5b942f83bf60233d956 debuginfo(build-id) = 9aea53e903c43170cd32bcb76572ca79b0576094 debuginfo(build-id) = 9b99e0ce58ad89899ac3ed543a14f7b024b6277f debuginfo(build-id) = 9c695576e893f356deec17bbd8128ae998dca294 debuginfo(build-id) = 9cd4b21c9101223f74fc867a40f046a5f10e60d5 debuginfo(build-id) = 9d600b5645a5f992ef835bc714b9eb7cb274b017 debuginfo(build-id) = 9ea254339e7b72b90dcd779c0a2aa3fc0046bbb8 debuginfo(build-id) = a0ef12a2c572a369367e49d0cdcede8abc20735c debuginfo(build-id) = a2e66ae0267de305cef5da0dc83adb58c5e1dbd7 debuginfo(build-id) = a3047cf1746e40c0c15300b3ed0ac8fabcb04e9a debuginfo(build-id) = a67ca22854b3a2835dc50c70d698d8bb3c02d107 debuginfo(build-id) = a6da2396a50806de154014f1f4e27d2eb4c717ca debuginfo(build-id) = a71e6da347aa5d86865e4bec3be8a71cc2e61f1e debuginfo(build-id) = ab29e3b4444dd31227f68eced5e0e7ef6deeedaa debuginfo(build-id) = ad95e01ca930c539c30972624f0f968dddc83a74 debuginfo(build-id) = adc639f3f72c64272b5576137b2cc82589966c2d debuginfo(build-id) = b06e76633800a6d1ba2fae5cc7acf4840f776415 debuginfo(build-id) = b63e004ded67403c3b66927515d88133911e0d8d debuginfo(build-id) = b928653282ccfbebaf8698ed6b968e1d9b2c4ff1 debuginfo(build-id) = b9f76777dc523c772e779972428f1dac690db683 debuginfo(build-id) = bcd137da00f83eda7ba7b8598e508c3ab3b4d725 debuginfo(build-id) = c2dddc92acc0a116d2ca391e06ec15875d354e34 debuginfo(build-id) = c3fc37e78244328d7bee7f90e16a0f2effd1e6b9 debuginfo(build-id) = c75ef9cf75c8611670cb510fa356c5b5b201f890 debuginfo(build-id) = c7f1349ae3d4b509a47e2ccdb020131d1a7aa126 debuginfo(build-id) = c9512cccf74b8e58121e7fb6fb974113d31b3621 debuginfo(build-id) = cc4344437b6b280f3861c0aec507a9d30a4c182e debuginfo(build-id) = cd9051c748b08cb732bec7c7555735174e1c883a debuginfo(build-id) = cf00a4e58d25f19f182cb189195f61f8f332c04e debuginfo(build-id) = cf163f5bdcdaf41b6d255f5182e373c1416affdd debuginfo(build-id) = d245bbed84b97e666f31153eafbe65457a853aeb debuginfo(build-id) = d2c494af6615a97ab7cc5f2f25e19d6f83d4d276 debuginfo(build-id) = d5b3663dc0da59530ceb4b45e1679379f48bf808 debuginfo(build-id) = d6cced9205237bf46ab7a9b5d0503f7b9b1d5e53 debuginfo(build-id) = d786740af66131c3d4a89d7ee831263adf48b1dd debuginfo(build-id) = d8d414c53e80f15eb9e1c36b6626a0012b77dbc4 debuginfo(build-id) = da6259362de1f36cab31c8a11a82c5ed85217332 debuginfo(build-id) = dbf21bf12add00a08142d6911db2f2c1d39de237 debuginfo(build-id) = de0ba0283e95af1dcd2511a06010fc4754b2b845 debuginfo(build-id) = de301567fbdd22a56162fe9aac83e5339637c357 debuginfo(build-id) = dfcb682b351f8131676b7ba24f78e769ff181860 debuginfo(build-id) = e0ade87bda9940db2531863270bba80533e331d5 debuginfo(build-id) = e3843c485dc2529c5b8ed103ab72077d844759ec debuginfo(build-id) = e3ae1c208ee4bf67486c09346b681877732a4ad6 debuginfo(build-id) = e500e65ab3142b1aa023fbaf50f5aa955027e880 debuginfo(build-id) = e8dd4488f43948ac81176cde9f7ea0e95ab5e9d3 debuginfo(build-id) = ec925c1e9ec20b06357a50cdfb52d231678e7a15 debuginfo(build-id) = ecdc5f5c9c5e1ea93198c5a6184ee9ddd73a6434 debuginfo(build-id) = ed50d51c1beabcebe541fc65496538ee4ee19df8 debuginfo(build-id) = ef58fefa3045c828e33211fe12b865f1d53f5522 debuginfo(build-id) = f646badfa872725d75dee834966d0ae52492044e debuginfo(build-id) = f681bd54702d6d341e2be726fc90d00b51352211 debuginfo(build-id) = f81c6e59c656da4e94de7c2e044e1386ca9ab0e0 debuginfo(build-id) = f84daf9ce8b04d596f5f8ae5b70e7372e3978b9d debuginfo(build-id) = fa21f88612c705ea252a9ad102a2e8f0f3d01ba5 debuginfo(build-id) = fb2c969d239defd3dd6ad798236ddd84ad383790 libopenbabel.so.7.0.0-3.1.1-39.fc44.aarch64.debug()(64bit) openbabel-libs-debuginfo = 3.1.1-39.fc44 openbabel-libs-debuginfo(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Processing files: perl-openbabel-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = 83f6c8060239017813cd339145335c40ab46dbb0 perl-openbabel-debuginfo = 3.1.1-39.fc44 perl-openbabel-debuginfo(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Processing files: python3-openbabel-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = 57068a5bdb2ee52c425d9034e8afafcca9b26200 python-openbabel-debuginfo = 3.1.1-39.fc44 python3-openbabel-debuginfo = 3.1.1-39.fc44 python3-openbabel-debuginfo(aarch-64) = 3.1.1-39.fc44 python3.14-openbabel-debuginfo = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Processing files: ruby-openbabel-debuginfo-3.1.1-39.fc44.aarch64 Provides: debuginfo(build-id) = ee8e99fc1407e82a3320077c379fcf083b584c17 ruby-openbabel-debuginfo = 3.1.1-39.fc44 ruby-openbabel-debuginfo(aarch-64) = 3.1.1-39.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(aarch-64) = 3.1.1-39.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-openbabel-debuginfo-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-libs-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/ruby-openbabel-debuginfo-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-debugsource-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/perl-openbabel-debuginfo-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/perl-openbabel-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-debuginfo-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/ruby-openbabel-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/python3-openbabel-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-gui-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-doc-3.1.1-39.fc44.noarch.rpm Wrote: /builddir/build/RPMS/openbabel-gui-debuginfo-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-devel-3.1.1-39.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/openbabel-libs-debuginfo-3.1.1-39.fc44.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.SH2Y8R + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + test -d /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/openbabel-3.1.1-build + rm -rf /builddir/build/BUILD/openbabel-3.1.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: File listed twice: /usr/lib/.build-id/a5/3de1c777d0d10d062cfaaaf43262c9f26109c2 Finish: rpmbuild openbabel-3.1.1-39.fc44.src.rpm Finish: build phase for openbabel-3.1.1-39.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1755767217.818727/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/openbabel-3.1.1-39.fc44.src.rpm) Config(child) 8 minutes 1 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "openbabel-gui", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "python3-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-doc", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "noarch" }, { "name": "perl-openbabel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "ruby-openbabel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-devel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-debugsource", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-gui-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "perl-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-libs-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "src" }, { "name": "ruby-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "openbabel-libs", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" }, { "name": "python3-openbabel", "epoch": null, "version": "3.1.1", "release": "39.fc44", "arch": "aarch64" } ] } RPMResults finished