## START: Set by rpmautospec ## (rpmautospec version 0.6.0) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 1; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec Name: python-pyspike Version: 0.8.0 Release: %autorelease Summary: Library for the numerical analysis of spike train similarity License: BSD-2-Clause URL: https://github.com/mariomulansky/PySpike Source: %{url}/archive/%{version}/PySpike-%{version}.tar.gz # Adapt numpy_include proxy for Cython 3 by making it an os.PathLike # https://github.com/mariomulansky/PySpike/pull/75 # See also: # https://github.com/mariomulansky/PySpike/pull/68 Patch: %{url}/pull/75.patch # Exclude tests from packages # https://github.com/mariomulansky/PySpike/pull/76 Patch: %{url}/pull/76.patch # In setup.cfg, replace deprecated metadata.description-file # https://github.com/mariomulansky/PySpike/pull/77 Patch: %{url}/pull/77.patch BuildRequires: python3-devel BuildRequires: %{py3_dist Cython} BuildRequires: gcc # Test dependencies are documented in Readme.rst: BuildRequires: %{py3_dist pytest} BuildRequires: %{py3_dist scipy} %global _description %{expand: PySpike is a Python library for the numerical analysis of spike train similarity. Its core functionality is the implementation of the ISI-distance[1] and SPIKE-distance[2], SPIKE-Synchronization [3], as well as their adaptive generalizations[4]. It provides functions to compute multivariate profiles, distance matrices, as well as averaging and general spike train processing. All computation intensive parts are implemented in C via Cython to reach a competitive performance (factor 100-200 over plain Python). PySpike provides the same fundamental functionality as the SPIKY framework for Matlab, which additionally contains spike-train generators, more spike train distance measures and many visualization routines. If you use PySpike in your research, please cite our SoftwareX publication on PySpike: Mario Mulansky, Thomas Kreuz, *PySpike - A Python library for analyzing spike train synchrony*, Software X 5, 183 (2016) Additionally, depending on the used methods: ISI-distance [1], SPIKE-distance [2], SPIKE-Synchronization [3], or their adaptive generalizations [4], please cite one or more of the following publications: [1] Kreuz T, Haas JS, Morelli A, Abarbanel HDI, Politi A, Measuring spike train synchrony. J Neurosci Methods 165, 151 (2007) [2] Kreuz T, Chicharro D, Houghton C, Andrzejak RG, Mormann F, Monitoring spike train synchrony. J Neurophysiol 109, 1457 (2013) [3] Kreuz T, Mulansky M and Bozanic N, *SPIKY: A graphical user interface for monitoring spike train synchrony*, J Neurophysiol 113, 3432 (2015) [4] Satuvuori E, Mulansky M, Bozanic N, Malvestio I, Zeldenrust F, Lenk K, and Kreuz T, Measures of spike train synchrony for data with multiple time-scales, J Neurosci Methods 287, 25 (2017) Documentation is available at http://mariomulansky.github.io/PySpike/} %description %_description %package -n python3-pyspike Summary: %{summary} %description -n python3-pyspike %_description %prep %autosetup -n PySpike-%{version} -p1 # Remove Cythonized C sources # https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_using_cython find . -type f -exec grep -FrinIl 'Generated by Cython' '{}' '+' | xargs -r -t rm -v # Comment out to remove /usr/bin/env shebangs # Can use something similar to correct/remove /usr/bin/python shebangs also # find . -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';' %generate_buildrequires %pyproject_buildrequires %build %pyproject_wheel %install %pyproject_install %pyproject_save_files pyspike %check %pytest -v %files -n python3-pyspike -f %{pyproject_files} %license License.txt %doc Readme.rst %doc Changelog %doc Contributors.txt %doc examples/ %changelog ## START: Generated by rpmautospec * Sun Feb 25 2024 Benjamin A. Beasley - 0.8.0-1 - Update to 0.8.0 (close RHBZ#2222843) - Update License to SPDX - Run the tests - Support Cython 3 (fix RHBZ#2254038) - Package examples as documentation * Fri Jan 26 2024 Fedora Release Engineering - 0.7.0-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering - 0.7.0-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Sep 06 2023 Sandro - 0.7.0-9 - Use Cython < 3~~ (RHBZ#2226301) - Add documentation * Tue Aug 15 2023 Ankur Sinha (Ankur Sinha Gmail) - 0.7.0-8 - chore: add packit * Fri Jul 21 2023 Fedora Release Engineering - 0.7.0-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue Jun 13 2023 Python Maint - 0.7.0-6 - Rebuilt for Python 3.12 * Fri Jan 20 2023 Fedora Release Engineering - 0.7.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jul 22 2022 Fedora Release Engineering - 0.7.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Mon Jun 13 2022 Python Maint - 0.7.0-3 - Rebuilt for Python 3.11 * Fri Jan 21 2022 Fedora Release Engineering - 0.7.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sun Jan 16 2022 Ankur Sinha (Ankur Sinha Gmail) - 0.7.0-1 - feat: update to 0.7.0 - move to pyproject macros - drop doc subpackage (requires unbundling of js etc.) * Fri Jul 23 2021 Fedora Release Engineering - 0.6.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint - 0.6.0-2 - Rebuilt for Python 3.10 * Wed Apr 14 2021 Ankur Sinha - 0.6.0-1 - Include examples in doc sub package - Build and include docs * Sun Apr 11 2021 Ankur Sinha - 0.6.0-1 - Initial build ## END: Generated by rpmautospec