Warning: Permanently added '3.95.243.160' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6965137-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.70
PID: 6128
Logging PID: 6129
Task:
{'appstream': False,
 'background': True,
 'bootstrap': 'off',
 'build_id': 6965137,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'e08a25c670b94fa1b46a98db70c070ab2e11c8c6',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/avogadro2-libs',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'avogadro2-libs',
 'package_version': '1.98.1-4',
 'project_dirname': 'python3.12',
 'project_name': 'python3.12',
 'project_owner': '@python',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.12/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': '@python/python3.12--https://src.fedoraproject.org/user/sagitter',
 'source_json': {},
 'source_type': None,
 'submitter': 'https://src.fedoraproject.org/user/sagitter',
 'tags': [],
 'task_id': '6965137-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs'...

Running: git checkout e08a25c670b94fa1b46a98db70c070ab2e11c8c6 --

cmd: ['git', 'checkout', 'e08a25c670b94fa1b46a98db70c070ab2e11c8c6', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs
rc: 0
stdout: 
stderr: Note: switching to 'e08a25c670b94fa1b46a98db70c070ab2e11c8c6'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at e08a25c automatic import of avogadro2-libs

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading avogadrolibs-1.98.1.tar.gz
INFO: Reading stdout from command: curl --help all
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Calling: curl -H Pragma: -o avogadrolibs-1.98.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/avogadro2-libs/avogadrolibs-1.98.1.tar.gz/md5/6e8d34caae91cbd1031a194893066cae/avogadrolibs-1.98.1.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 4494k  100 4494k    0     0   119M      0 --:--:-- --:--:-- --:--:--  121M
INFO: Reading stdout from command: md5sum avogadrolibs-1.98.1.tar.gz
INFO: Downloading avogenerators-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o avogenerators-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/avogadro2-libs/avogenerators-1.98.0.tar.gz/md5/74b508114f30f469256a19ebc4996f87/avogenerators-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 15676  100 15676    0     0   684k      0 --:--:-- --:--:-- --:--:--  695k
INFO: Reading stdout from command: md5sum avogenerators-1.98.0.tar.gz
INFO: Downloading crystals-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o crystals-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/avogadro2-libs/crystals-1.98.0.tar.gz/md5/07733a52b8a6572adb353abb6044d6f6/crystals-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 53.3M  100 53.3M    0     0   318M      0 --:--:-- --:--:-- --:--:--  319M
INFO: Reading stdout from command: md5sum crystals-1.98.0.tar.gz
INFO: Downloading molecules-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o molecules-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/avogadro2-libs/molecules-1.98.0.tar.gz/md5/789264f5a03f37bf336d2904abe9cd3d/molecules-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 9720k  100 9720k    0     0   170M      0 --:--:-- --:--:-- --:--:--  172M
INFO: Reading stdout from command: md5sum molecules-1.98.0.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706299090.170202 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706299090.170202 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs/avogadro2-libs.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.4
INFO: Mock Version: 5.4
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706299090.170202/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (fallback)
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.18.2-1.fc38.x86_64
  rpm-sequoia-1.4.0-3.fc38.x86_64
  python3-dnf-4.18.2-1.fc38.noarch
  python3-dnf-plugins-core-4.4.4-1.fc38.noarch
  yum-4.18.2-1.fc38.noarch
  dnf5-5.1.11-1.fc38.x86_64
  dnf5-plugins-5.1.11-1.fc38.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  33.6 MiB/s |  20.7 MiB |  00m01s
 Copr repository                        100% |  23.8 MiB/s |   4.7 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 118.8 MiB/s |  17.0 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository                                                         Size
Installing group/module packages:                                                                                                          
 bash                             x86_64 5.2.26-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.1 MiB
 bzip2                            x86_64 1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  91.5 KiB
 coreutils                        x86_64 9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 MiB
 cpio                             x86_64 2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                        x86_64 3.10-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common            noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 KiB
 findutils                        x86_64 1:4.9.0-6.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 gawk                             x86_64 5.3.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack           x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                             x86_64 3.11-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                             x86_64 1.12-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.0 KiB
 info                             x86_64 7.1-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 373.6 KiB
 patch                            x86_64 2.7.6-22.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 254.6 KiB
 redhat-rpm-config                noarch 280-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.2 KiB
 rpm-build                        x86_64 4.19.1-4.fc40              copr_base                                                     173.7 KiB
 sed                              x86_64 4.8-14.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.8 KiB
 shadow-utils                     x86_64 2:4.14.0-2.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                              x86_64 2:1.35-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                            x86_64 6.0-62.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394.6 KiB
 util-linux                       x86_64 2.39.3-4.fc40              copr_base                                                       3.5 MiB
 which                            x86_64 2.21-40.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.1 KiB
 xz                               x86_64 5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
Installing dependencies:                                                                                                                   
 alternatives                     x86_64 1.26-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  62.3 KiB
 ansible-srpm-macros              noarch 1-12.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                       x86_64 4.0-7.fc40                 copr_base                                                     311.3 KiB
 authselect                       x86_64 1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.5 KiB
 authselect-libs                  x86_64 1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 987.8 KiB
 basesystem                       noarch 11-18.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                         x86_64 2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.4 MiB
 binutils-gold                    x86_64 2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 bzip2-libs                       x86_64 1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.6 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-4.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                 x86_64 9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.4 MiB
 cracklib                         x86_64 2.9.11-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 246.6 KiB
 crypto-policies                  noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB
 curl                             x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.4 KiB
 cyrus-sasl-lib                   x86_64 2.1.28-17.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 debugedit                        x86_64 5.0-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.8 KiB
 dwz                              x86_64 0.15-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.9 KiB
 ed                               x86_64 1.20-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.4 KiB
 efi-srpm-macros                  noarch 5-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                         x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 elfutils-debuginfod-client       x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.7 KiB
 elfutils-default-yama-scope      noarch 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                  x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 elfutils-libs                    x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 690.0 KiB
 fedora-gpg-keys                  noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB
 fedora-release                   noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic    noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                     noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide             noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                             x86_64 5.45-3.fc40                copr_base                                                     103.5 KiB
 file-libs                        x86_64 5.45-3.fc40                copr_base                                                       9.9 MiB
 filesystem                       x86_64 3.18-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-12.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                noarch 0.2.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 fpc-srpm-macros                  noarch 1.3-8.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                      x86_64 14.1-7.fc40                copr_base                                                      12.3 MiB
 gdbm                             x86_64 1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 472.5 KiB
 gdbm-libs                        x86_64 1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.7 KiB
 ghc-srpm-macros                  noarch 1.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0   B
 glibc                            x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.7 MiB
 glibc-common                     x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 gmp                              x86_64 1:6.2.1-5.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 798.5 KiB
 gnat-srpm-macros                 noarch 6-3.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                   noarch 3.3.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.6 KiB
 jansson                          x86_64 2.13.1-7.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.3 KiB
 kernel-srpm-macros               noarch 1.0-20.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                    x86_64 1.6.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 krb5-libs                        x86_64 1.21.2-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                           x86_64 2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0 KiB
 libarchive                       x86_64 3.7.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 922.5 KiB
 libattr                          x86_64 2.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 libblkid                         x86_64 2.39.3-4.fc40              copr_base                                                     229.0 KiB
 libbrotli                        x86_64 1.1.0-3.fc40               copr_base                                                     829.5 KiB
 libcap                           x86_64 2.69-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224.6 KiB
 libcap-ng                        x86_64 0.8.4-4.fc40               copr_base                                                      73.1 KiB
 libcom_err                       x86_64 1.47.0-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.1 KiB
 libcurl                          x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 768.6 KiB
 libeconf                         x86_64 0.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.9 KiB
 libevent                         x86_64 2.1.12-9.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 899.2 KiB
 libfdisk                         x86_64 2.39.3-4.fc40              copr_base                                                     362.9 KiB
 libffi                           x86_64 3.4.4-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.5 KiB
 libgcc                           x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 270.6 KiB
 libgomp                          x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.7 KiB
 libidn2                          x86_64 2.3.4-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 323.0 KiB
 libmount                         x86_64 2.39.3-4.fc40              copr_base                                                     352.1 KiB
 libnghttp2                       x86_64 1.59.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166.1 KiB
 libnsl2                          x86_64 2.0.0-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 libpkgconf                       x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.1 KiB
 libpsl                           x86_64 0.21.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libpwquality                     x86_64 1.4.5-9.fc40               copr_base                                                     417.8 KiB
 libselinux                       x86_64 3.6-4.fc40                 copr_base                                                     173.0 KiB
 libsemanage                      x86_64 3.6-3.fc40                 copr_base                                                     293.5 KiB
 libsepol                         x86_64 3.6-3.fc40                 copr_base                                                     802.0 KiB
 libsmartcols                     x86_64 2.39.3-4.fc40              copr_base                                                     144.1 KiB
 libssh                           x86_64 0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.2 KiB
 libssh-config                    noarch 0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                        x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                         x86_64 4.19.0-3.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.6 KiB
 libtirpc                         x86_64 1.3.4-1.rc1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.8 KiB
 libunistring                     x86_64 1.1-5.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                      x86_64 1.2.1-10.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.6 KiB
 libuuid                          x86_64 2.39.3-4.fc40              copr_base                                                      37.5 KiB
 libverto                         x86_64 0.3.2-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.4 KiB
 libxcrypt                        x86_64 4.4.36-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.8 KiB
 libxml2                          x86_64 2.12.4-3.fc40              copr_base                                                       1.7 MiB
 libzstd                          x86_64 1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 772.0 KiB
 lua-libs                         x86_64 5.4.6-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.0 KiB
 lua-srpm-macros                  noarch 1-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                         x86_64 1.9.4-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.3 KiB
 mpfr                             x86_64 4.2.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 820.1 KiB
 ncurses-base                     noarch 6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                     x86_64 6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.1 KiB
 ocaml-srpm-macros                noarch 9-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros             noarch 2-14.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0   B
 openldap                         x86_64 2.6.6-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 641.5 KiB
 openssl-libs                     x86_64 1:3.1.4-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 p11-kit                          x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 p11-kit-trust                    x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 459.4 KiB
 package-notes-srpm-macros        noarch 0.5-9.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                              x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 pam-libs                         x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB
 pcre2                            x86_64 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 633.4 KiB
 pcre2-syntax                     noarch 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-srpm-macros                 noarch 1-51.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                          x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.7 KiB
 pkgconf-m4                       noarch 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config               x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0   B
 popt                             x86_64 1.19-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.8 KiB
 publicsuffix-list-dafsa          noarch 20240107-1.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros               noarch 3.12-312.fc39              copr_base                                                      50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                  noarch 6.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                         x86_64 8.2-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB
 rpm                              x86_64 4.19.1-4.fc40              copr_base                                                       3.0 MiB
 rpm-build-libs                   x86_64 4.19.1-4.fc40              copr_base                                                     194.4 KiB
 rpm-libs                         x86_64 4.19.1-4.fc40              copr_base                                                     710.0 KiB
 rpm-sequoia                      x86_64 1.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 rust-srpm-macros                 noarch 25.2-2.fc40                copr_base                                                       5.1 KiB
 setup                            noarch 2.14.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB
 sqlite-libs                      x86_64 3.45.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 systemd-libs                     x86_64 255.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 util-linux-core                  x86_64 2.39.3-4.fc40              copr_base                                                       1.4 MiB
 xxhash-libs                      x86_64 0.8.2-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.4 KiB
 xz-libs                          x86_64 5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.7 KiB
 zig-srpm-macros                  noarch 1-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                              x86_64 3.0-39.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.2 KiB
 zlib-ng-compat                   x86_64 2.1.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.0 KiB
 zstd                             x86_64 1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
Installing groups:                                                                                                                         
 Buildsystem building group                                                                                                                

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation 178 MiB will be used (install 178 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-16.fc39.x86_64  100% |   1.5 MiB/s |  52.3 KiB |  00m00s
[  2/152] coreutils-0:9.4-3.fc40.x86_64 100% |  31.3 MiB/s |   1.1 MiB |  00m00s
[  3/152] cpio-0:2.15-1.fc40.x86_64     100% |  55.7 MiB/s | 285.1 KiB |  00m00s
[  4/152] fedora-release-common-0:40-0. 100% |  10.0 MiB/s |  20.5 KiB |  00m00s
[  5/152] findutils-1:4.9.0-6.fc40.x86_ 100% |  94.1 MiB/s | 482.0 KiB |  00m00s
[  6/152] diffutils-0:3.10-3.fc39.x86_6 100% |  25.4 MiB/s | 389.6 KiB |  00m00s
[  7/152] glibc-minimal-langpack-0:2.38 100% |  23.6 MiB/s |  96.5 KiB |  00m00s
[  8/152] grep-0:3.11-5.fc40.x86_64     100% |  70.2 MiB/s | 287.4 KiB |  00m00s
[  9/152] bash-0:5.2.26-1.fc40.x86_64   100% |  27.1 MiB/s |   1.8 MiB |  00m00s
[ 10/152] gzip-0:1.12-6.fc39.x86_64     100% |  31.1 MiB/s | 159.1 KiB |  00m00s
[ 11/152] info-0:7.1-1.fc40.x86_64      100% |  45.0 MiB/s | 184.5 KiB |  00m00s
[ 12/152] patch-0:2.7.6-22.fc39.x86_64  100% |  24.5 MiB/s | 125.4 KiB |  00m00s
[ 13/152] gawk-0:5.3.0-1.fc40.x86_64    100% |  48.1 MiB/s |   1.1 MiB |  00m00s
[ 14/152] redhat-rpm-config-0:280-1.fc4 100% |  24.5 MiB/s |  75.2 KiB |  00m00s
[ 15/152] sed-0:4.8-14.fc39.x86_64      100% |  29.1 MiB/s | 297.5 KiB |  00m00s
[ 16/152] shadow-utils-2:4.14.0-2.fc40. 100% | 120.5 MiB/s |   1.2 MiB |  00m00s
[ 17/152] rpm-build-0:4.19.1-4.fc40.x86 100% |   5.0 MiB/s |  71.0 KiB |  00m00s
[ 18/152] unzip-0:6.0-62.fc39.x86_64    100% |  45.0 MiB/s | 184.4 KiB |  00m00s
[ 19/152] which-0:2.21-40.fc39.x86_64   100% |  13.6 MiB/s |  41.8 KiB |  00m00s
[ 20/152] tar-2:1.35-2.fc40.x86_64      100% |  83.5 MiB/s | 854.6 KiB |  00m00s
[ 21/152] util-linux-0:2.39.3-4.fc40.x8 100% |  50.1 MiB/s |   1.1 MiB |  00m00s
[ 22/152] xz-0:5.4.5-1.fc40.x86_64      100% |  32.4 MiB/s | 531.3 KiB |  00m00s
[ 23/152] glibc-0:2.38.9000-35.fc40.x86 100% | 130.8 MiB/s |   2.2 MiB |  00m00s
[ 24/152] rpm-0:4.19.1-4.fc40.x86_64    100% | 125.1 MiB/s | 512.5 KiB |  00m00s
[ 25/152] rpm-libs-0:4.19.1-4.fc40.x86_ 100% |  60.4 MiB/s | 309.0 KiB |  00m00s
[ 26/152] glibc-common-0:2.38.9000-35.f 100% |  30.6 MiB/s | 376.5 KiB |  00m00s
[ 27/152] glibc-gconv-extra-0:2.38.9000 100% | 135.7 MiB/s |   1.6 MiB |  00m00s
[ 28/152] rpm-build-libs-0:4.19.1-4.fc4 100% |  46.7 MiB/s |  95.6 KiB |  00m00s
[ 29/152] xz-libs-0:5.4.5-1.fc40.x86_64 100% |  21.2 MiB/s | 108.4 KiB |  00m00s
[ 30/152] bzip2-libs-0:1.0.8-16.fc39.x8 100% |  13.5 MiB/s |  41.3 KiB |  00m00s
[ 31/152] libacl-0:2.3.2-1.fc40.x86_64  100% |   8.0 MiB/s |  24.4 KiB |  00m00s
[ 32/152] libattr-0:2.5.2-1.fc40.x86_64 100% |   5.9 MiB/s |  18.0 KiB |  00m00s
[ 33/152] libselinux-0:3.6-4.fc40.x86_6 100% |  21.5 MiB/s |  88.0 KiB |  00m00s
[ 34/152] audit-libs-0:4.0-7.fc40.x86_6 100% |  29.4 MiB/s | 120.5 KiB |  00m00s
[ 35/152] libeconf-0:0.5.2-1.fc40.x86_6 100% |   9.8 MiB/s |  30.1 KiB |  00m00s
[ 36/152] libxcrypt-0:4.4.36-4.fc40.x86 100% |  38.6 MiB/s | 118.4 KiB |  00m00s
[ 37/152] libsemanage-0:3.6-3.fc40.x86_ 100% |  22.8 MiB/s | 116.9 KiB |  00m00s
[ 38/152] setup-0:2.14.5-1.fc40.noarch  100% |  36.2 MiB/s | 148.1 KiB |  00m00s
[ 39/152] ansible-srpm-macros-0:1-12.fc 100% |   6.8 MiB/s |  20.9 KiB |  00m00s
[ 40/152] dwz-0:0.15-3.fc39.x86_64      100% |  32.7 MiB/s | 134.1 KiB |  00m00s
[ 41/152] efi-srpm-macros-0:5-9.fc39.no 100% |   7.2 MiB/s |  22.2 KiB |  00m00s
[ 42/152] file-0:5.45-3.fc40.x86_64     100% |  12.1 MiB/s |  49.4 KiB |  00m00s
[ 43/152] fonts-srpm-macros-1:2.0.5-12. 100% |   8.6 MiB/s |  26.5 KiB |  00m00s
[ 44/152] forge-srpm-macros-0:0.2.0-1.f 100% |   6.0 MiB/s |  18.5 KiB |  00m00s
[ 45/152] fpc-srpm-macros-0:1.3-8.fc39. 100% |   1.8 MiB/s |   7.4 KiB |  00m00s
[ 46/152] ghc-srpm-macros-0:1.6.1-3.fc4 100% |   4.0 MiB/s |   8.1 KiB |  00m00s
[ 47/152] gnat-srpm-macros-0:6-3.fc39.n 100% |   2.9 MiB/s |   8.8 KiB |  00m00s
[ 48/152] go-srpm-macros-0:3.3.1-1.fc40 100% |   9.0 MiB/s |  27.7 KiB |  00m00s
[ 49/152] kernel-srpm-macros-0:1.0-20.f 100% |   3.4 MiB/s |  10.5 KiB |  00m00s
[ 50/152] lua-srpm-macros-0:1-9.fc39.no 100% |   4.2 MiB/s |   8.6 KiB |  00m00s
[ 51/152] file-libs-0:5.45-3.fc40.x86_6 100% |  43.8 MiB/s | 763.2 KiB |  00m00s
[ 52/152] ocaml-srpm-macros-0:9-1.fc40. 100% |   2.9 MiB/s |   9.0 KiB |  00m00s
[ 53/152] openblas-srpm-macros-0:2-14.f 100% |   2.5 MiB/s |   7.5 KiB |  00m00s
[ 54/152] package-notes-srpm-macros-0:0 100% |   3.6 MiB/s |  11.2 KiB |  00m00s
[ 55/152] perl-srpm-macros-0:1-51.fc39. 100% |   3.9 MiB/s |   8.0 KiB |  00m00s
[ 56/152] pyproject-srpm-macros-0:1.12. 100% |   4.4 MiB/s |  13.6 KiB |  00m00s
[ 57/152] python-srpm-macros-0:3.12-312 100% |  10.5 MiB/s |  21.4 KiB |  00m00s
[ 58/152] qt5-srpm-macros-0:5.15.12-1.f 100% |   4.1 MiB/s |   8.4 KiB |  00m00s
[ 59/152] qt6-srpm-macros-0:6.6.1-3.fc4 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 60/152] rust-srpm-macros-0:25.2-2.fc4 100% |   6.6 MiB/s |  13.5 KiB |  00m00s
[ 61/152] zig-srpm-macros-0:1-1.fc40.no 100% |   2.6 MiB/s |   8.0 KiB |  00m00s
[ 62/152] zip-0:3.0-39.fc40.x86_64      100% |  64.8 MiB/s | 265.6 KiB |  00m00s
[ 63/152] ed-0:1.20-1.fc40.x86_64       100% |  19.9 MiB/s |  81.7 KiB |  00m00s
[ 64/152] basesystem-0:11-18.fc39.noarc 100% |   2.3 MiB/s |   7.2 KiB |  00m00s
[ 65/152] ncurses-libs-0:6.4-9.20240113 100% |  64.9 MiB/s | 332.4 KiB |  00m00s
[ 66/152] pcre2-0:10.42-2.fc40.x86_64   100% |  45.5 MiB/s | 233.2 KiB |  00m00s
[ 67/152] libgcc-0:14.0.1-0.3.fc40.x86_ 100% |  27.2 MiB/s | 111.4 KiB |  00m00s
[ 68/152] filesystem-0:3.18-6.fc39.x86_ 100% | 133.6 MiB/s |   1.1 MiB |  00m00s
[ 69/152] gmp-1:6.2.1-5.fc39.x86_64     100% |  33.9 MiB/s | 312.6 KiB |  00m00s
[ 70/152] mpfr-0:4.2.1-1.fc40.x86_64    100% |  47.8 MiB/s | 342.8 KiB |  00m00s
[ 71/152] readline-0:8.2-7.fc40.x86_64  100% |  41.6 MiB/s | 213.2 KiB |  00m00s
[ 72/152] fedora-repos-0:40-0.2.noarch  100% |   2.3 MiB/s |   9.3 KiB |  00m00s
[ 73/152] libcap-0:2.69-1.fc40.x86_64   100% |  20.3 MiB/s |  83.1 KiB |  00m00s
[ 74/152] elfutils-libelf-0:0.190-4.fc4 100% |  21.1 MiB/s | 194.3 KiB |  00m00s
[ 75/152] coreutils-common-0:9.4-3.fc40 100% | 163.5 MiB/s |   2.1 MiB |  00m00s
[ 76/152] authselect-libs-0:1.5.0-1.fc4 100% |  45.6 MiB/s | 233.5 KiB |  00m00s
[ 77/152] libcap-ng-0:0.8.4-4.fc40.x86_ 100% |  16.2 MiB/s |  33.1 KiB |  00m00s
[ 78/152] libblkid-0:2.39.3-4.fc40.x86_ 100% |  12.5 MiB/s | 114.9 KiB |  00m00s
[ 79/152] openssl-libs-1:3.1.4-1.fc40.x 100% | 136.0 MiB/s |   2.2 MiB |  00m00s
[ 80/152] libmount-0:2.39.3-4.fc40.x86_ 100% |  18.9 MiB/s | 154.4 KiB |  00m00s
[ 81/152] libsmartcols-0:2.39.3-4.fc40. 100% |   9.5 MiB/s |  68.1 KiB |  00m00s
[ 82/152] libfdisk-0:2.39.3-4.fc40.x86_ 100% |   9.8 MiB/s | 159.8 KiB |  00m00s
[ 83/152] libutempter-0:1.2.1-10.fc39.x 100% |   8.5 MiB/s |  26.3 KiB |  00m00s
[ 84/152] libuuid-0:2.39.3-4.fc40.x86_6 100% |   4.0 MiB/s |  28.9 KiB |  00m00s
[ 85/152] pam-libs-0:1.6.0-1.fc40.x86_6 100% |  11.1 MiB/s |  56.9 KiB |  00m00s
[ 86/152] pam-0:1.6.0-1.fc40.x86_64     100% |  84.0 MiB/s | 516.0 KiB |  00m00s
[ 87/152] zlib-ng-compat-0:2.1.6-1.fc40 100% |  18.7 MiB/s |  76.4 KiB |  00m00s
[ 88/152] systemd-libs-0:255.3-1.fc40.x 100% |  86.3 MiB/s | 707.0 KiB |  00m00s
[ 89/152] util-linux-core-0:2.39.3-4.fc 100% |  59.8 MiB/s | 490.0 KiB |  00m00s
[ 90/152] libzstd-0:1.5.5-4.fc39.x86_64 100% |  60.3 MiB/s | 308.6 KiB |  00m00s
[ 91/152] lua-libs-0:5.4.6-3.fc39.x86_6 100% |  32.4 MiB/s | 132.7 KiB |  00m00s
[ 92/152] popt-0:1.19-3.fc39.x86_64     100% |  14.5 MiB/s |  59.2 KiB |  00m00s
[ 93/152] elfutils-libs-0:0.190-4.fc40. 100% |  36.1 MiB/s | 258.7 KiB |  00m00s
[ 94/152] rpm-sequoia-0:1.5.0-2.fc40.x8 100% |  85.8 MiB/s | 878.7 KiB |  00m00s
[ 95/152] sqlite-libs-0:3.45.0-1.fc40.x 100% |  62.5 MiB/s | 704.4 KiB |  00m00s
[ 96/152] libgomp-0:14.0.1-0.3.fc40.x86 100% |  64.7 MiB/s | 331.1 KiB |  00m00s
[ 97/152] debugedit-0:5.0-12.fc40.x86_6 100% |  19.1 MiB/s |  78.4 KiB |  00m00s
[ 98/152] pkgconf-pkg-config-0:1.9.5-2. 100% |   1.3 MiB/s |   9.6 KiB |  00m00s
[ 99/152] elfutils-0:0.190-4.fc40.x86_6 100% |  40.9 MiB/s | 544.6 KiB |  00m00s
[100/152] zstd-0:1.5.5-4.fc39.x86_64    100% |  47.1 MiB/s | 482.3 KiB |  00m00s
[101/152] libarchive-0:3.7.2-1.fc40.x86 100% |  49.8 MiB/s | 407.9 KiB |  00m00s
[102/152] binutils-0:2.41-30.fc40.x86_6 100% | 172.6 MiB/s |   6.2 MiB |  00m00s
[103/152] lz4-libs-0:1.9.4-4.fc39.x86_6 100% |  16.3 MiB/s |  66.7 KiB |  00m00s
[104/152] libstdc++-0:14.0.1-0.3.fc40.x 100% |  77.2 MiB/s | 870.1 KiB |  00m00s
[105/152] pkgconf-0:1.9.5-2.fc39.x86_64 100% |  10.4 MiB/s |  42.5 KiB |  00m00s
[106/152] pkgconf-m4-0:1.9.5-2.fc39.noa 100% |   4.5 MiB/s |  13.9 KiB |  00m00s
[107/152] libsepol-0:3.6-3.fc40.x86_64  100% |  17.5 MiB/s | 340.6 KiB |  00m00s
[108/152] libpkgconf-0:1.9.5-2.fc39.x86 100% |  12.3 MiB/s |  37.7 KiB |  00m00s
[109/152] pcre2-syntax-0:10.42-2.fc40.n 100% |  34.9 MiB/s | 143.1 KiB |  00m00s
[110/152] authselect-0:1.5.0-1.fc40.x86 100% |  46.8 MiB/s | 143.8 KiB |  00m00s
[111/152] gdbm-1:1.23-4.fc39.x86_64     100% |  36.5 MiB/s | 149.6 KiB |  00m00s
[112/152] gdbm-libs-1:1.23-4.fc39.x86_6 100% |  13.7 MiB/s |  56.1 KiB |  00m00s
[113/152] libnsl2-0:2.0.0-6.fc39.x86_64 100% |   9.7 MiB/s |  29.7 KiB |  00m00s
[114/152] libtirpc-0:1.3.4-1.rc1.fc40.x 100% |  30.5 MiB/s |  93.7 KiB |  00m00s
[115/152] libpwquality-0:1.4.5-9.fc40.x 100% |  15.2 MiB/s | 108.8 KiB |  00m00s
[116/152] ca-certificates-0:2023.2.62_v 100% | 120.3 MiB/s | 862.6 KiB |  00m00s
[117/152] crypto-policies-0:20231204-1. 100% |  13.4 MiB/s |  68.7 KiB |  00m00s
[118/152] ncurses-base-0:6.4-9.20240113 100% |  20.7 MiB/s |  63.5 KiB |  00m00s
[119/152] libcom_err-0:1.47.0-2.fc39.x8 100% |   6.3 MiB/s |  26.0 KiB |  00m00s
[120/152] krb5-libs-0:1.21.2-3.fc40.x86 100% | 104.8 MiB/s | 751.5 KiB |  00m00s
[121/152] keyutils-libs-0:1.6.3-1.fc40. 100% |  10.2 MiB/s |  31.3 KiB |  00m00s
[122/152] libverto-0:0.3.2-6.fc39.x86_6 100% |   6.6 MiB/s |  20.4 KiB |  00m00s
[123/152] fedora-gpg-keys-0:40-0.2.noar 100% |  38.9 MiB/s | 119.4 KiB |  00m00s
[124/152] fedora-repos-rawhide-0:40-0.2 100% |   2.9 MiB/s |   8.9 KiB |  00m00s
[125/152] elfutils-default-yama-scope-0 100% |   4.2 MiB/s |  12.8 KiB |  00m00s
[126/152] p11-kit-0:0.25.3-1.fc40.x86_6 100% |  82.6 MiB/s | 507.6 KiB |  00m00s
[127/152] p11-kit-trust-0:0.25.3-1.fc40 100% |  34.5 MiB/s | 141.5 KiB |  00m00s
[128/152] libxml2-0:2.12.4-3.fc40.x86_6 100% |  35.2 MiB/s | 685.6 KiB |  00m00s
[129/152] alternatives-0:1.26-1.fc40.x8 100% |   7.7 MiB/s |  39.6 KiB |  00m00s
[130/152] elfutils-debuginfod-client-0: 100% |   7.3 MiB/s |  37.6 KiB |  00m00s
[131/152] binutils-gold-0:2.41-30.fc40. 100% |  95.4 MiB/s | 781.8 KiB |  00m00s
[132/152] cracklib-0:2.9.11-2.fc39.x86_ 100% |  26.9 MiB/s |  82.7 KiB |  00m00s
[133/152] jansson-0:2.13.1-7.fc39.x86_6 100% |  10.8 MiB/s |  44.1 KiB |  00m00s
[134/152] libtasn1-0:4.19.0-3.fc39.x86_ 100% |  24.2 MiB/s |  74.2 KiB |  00m00s
[135/152] fedora-release-0:40-0.29.noar 100% |   3.3 MiB/s |  10.0 KiB |  00m00s
[136/152] libffi-0:3.4.4-5.fc40.x86_64  100% |  12.8 MiB/s |  39.4 KiB |  00m00s
[137/152] fedora-release-identity-basic 100% |   3.5 MiB/s |  10.8 KiB |  00m00s
[138/152] libcurl-0:8.5.0-2.fc40.x86_64 100% |  55.9 MiB/s | 343.2 KiB |  00m00s
[139/152] curl-0:8.5.0-2.fc40.x86_64    100% |  71.8 MiB/s | 367.5 KiB |  00m00s
[140/152] xxhash-libs-0:0.8.2-1.fc39.x8 100% |  12.2 MiB/s |  37.3 KiB |  00m00s
[141/152] libidn2-0:2.3.4-3.fc39.x86_64 100% |  36.0 MiB/s | 110.6 KiB |  00m00s
[142/152] libnghttp2-0:1.59.0-1.fc40.x8 100% |  18.3 MiB/s |  75.1 KiB |  00m00s
[143/152] libbrotli-0:1.1.0-3.fc40.x86_ 100% |  23.6 MiB/s | 338.9 KiB |  00m00s
[144/152] libpsl-0:0.21.5-1.fc40.x86_64 100% |  20.6 MiB/s |  63.3 KiB |  00m00s
[145/152] libssh-0:0.10.6-2.fc40.x86_64 100% |  51.9 MiB/s | 212.5 KiB |  00m00s
[146/152] openldap-0:2.6.6-1.fc39.x86_6 100% |  49.8 MiB/s | 254.8 KiB |  00m00s
[147/152] gdb-minimal-0:14.1-7.fc40.x86 100% | 130.9 MiB/s |   4.2 MiB |  00m00s
[148/152] cyrus-sasl-lib-0:2.1.28-17.fc 100% |  96.3 MiB/s | 789.0 KiB |  00m00s
[149/152] libevent-0:2.1.12-9.fc39.x86_ 100% |  28.0 MiB/s | 257.7 KiB |  00m00s
[150/152] libssh-config-0:0.10.6-2.fc40 100% |   3.0 MiB/s |   9.1 KiB |  00m00s
[151/152] publicsuffix-list-dafsa-0:202 100% |  18.9 MiB/s |  58.0 KiB |  00m00s
[152/152] libunistring-0:1.1-5.fc40.x86 100% |  88.4 MiB/s | 543.2 KiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% | 127.5 MiB/s |  51.8 MiB |  00m00s
Running transaction
[  1/154] Verify package files          100% | 921.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
[  2/154] Prepare transaction           100% |   4.2 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 265.9 MiB/s | 272.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.x86_64
[  4/154] Installing crypto-policies-0: 100% |  44.4 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no
[  5/154] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  54.6 MiB/s | 167.6 KiB |  00m00s
[  7/154] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/154] Installing fedora-repos-0:40- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  22.6 MiB/s |  23.2 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.14.5-1.f 100% |  70.9 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   3.3 MiB/s | 212.4 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-18 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/154] Installing ncurses-base-0:6.4 100% |  85.9 MiB/s | 351.6 KiB |  00m00s
[ 17/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 18/154] Installing ncurses-libs-0:6.4 100% | 236.7 MiB/s | 969.6 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 19/154] Installing glibc-0:2.38.9000- 100% | 224.9 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 20/154] Installing bash-0:5.2.26-1.fc 100% | 408.1 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-1.fc40.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-1.fc40.x86_64
[ 21/154] Installing glibc-common-0:2.3 100% | 204.2 MiB/s |   1.0 MiB |  00m00s
[ 22/154] Installing glibc-gconv-extra- 100% | 245.7 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
[ 23/154] Installing zlib-ng-compat-0:2 100% | 127.8 MiB/s | 130.8 KiB |  00m00s
[ 24/154] Installing xz-libs-0:5.4.5-1. 100% | 205.9 MiB/s | 210.8 KiB |  00m00s
[ 25/154] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.7 KiB |  00m00s
[ 26/154] Installing readline-0:8.2-7.f 100% | 239.9 MiB/s | 491.4 KiB |  00m00s
[ 27/154] Installing libuuid-0:2.39.3-4 100% |   0.0   B/s |  38.8 KiB |  00m00s
[ 28/154] Installing libzstd-0:1.5.5-4. 100% | 377.6 MiB/s | 773.2 KiB |  00m00s
[ 29/154] Installing elfutils-libelf-0: 100% | 492.8 MiB/s |   1.0 MiB |  00m00s
[ 30/154] Installing popt-0:1.19-3.fc39 100% |  70.0 MiB/s | 143.4 KiB |  00m00s
[ 31/154] Installing libstdc++-0:14.0.1 100% | 394.6 MiB/s |   2.8 MiB |  00m00s
[ 32/154] Installing libblkid-0:2.39.3- 100% | 224.7 MiB/s | 230.1 KiB |  00m00s
[ 33/154] Installing libattr-0:2.5.2-1. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 34/154] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  40.8 KiB |  00m00s
[ 35/154] Installing libxcrypt-0:4.4.36 100% | 259.3 MiB/s | 265.5 KiB |  00m00s
[ 36/154] Installing gmp-1:6.2.1-5.fc39 100% | 391.0 MiB/s | 800.8 KiB |  00m00s
[ 37/154] Installing libeconf-0:0.5.2-1 100% |  56.2 MiB/s |  57.6 KiB |  00m00s
[ 38/154] Installing lz4-libs-0:1.9.4-4 100% |   0.0   B/s | 134.4 KiB |  00m00s
[ 39/154] Installing gdbm-libs-1:1.23-4 100% | 124.4 MiB/s | 127.4 KiB |  00m00s
[ 40/154] Installing mpfr-0:4.2.1-1.fc4 100% | 401.2 MiB/s | 821.6 KiB |  00m00s
[ 41/154] Installing gawk-0:5.3.0-1.fc4 100% | 344.8 MiB/s |   1.7 MiB |  00m00s
[ 42/154] Installing dwz-0:0.15-3.fc39. 100% | 277.6 MiB/s | 284.2 KiB |  00m00s
[ 43/154] Installing unzip-0:6.0-62.fc3 100% | 194.4 MiB/s | 398.2 KiB |  00m00s
[ 44/154] Installing file-libs-0:5.45-3 100% | 662.0 MiB/s |   9.9 MiB |  00m00s
[ 45/154] Installing file-0:5.45-3.fc40 100% | 102.6 MiB/s | 105.0 KiB |  00m00s
[ 46/154] Installing libcap-ng-0:0.8.4- 100% |  73.2 MiB/s |  75.0 KiB |  00m00s
[ 47/154] Installing audit-libs-0:4.0-7 100% | 306.0 MiB/s | 313.4 KiB |  00m00s
[ 48/154] Installing pam-libs-0:1.6.0-1 100% | 134.1 MiB/s | 137.3 KiB |  00m00s
[ 49/154] Installing libcap-0:2.69-1.fc 100% | 112.0 MiB/s | 229.3 KiB |  00m00s
[ 50/154] Installing systemd-libs-0:255 100% | 386.1 MiB/s |   1.9 MiB |  00m00s
[ 51/154] Installing libsmartcols-0:2.3 100% | 142.0 MiB/s | 145.4 KiB |  00m00s
[ 52/154] Installing lua-libs-0:5.4.6-3 100% | 283.4 MiB/s | 290.2 KiB |  00m00s
[ 53/154] Installing libsepol-0:3.6-3.f 100% | 392.1 MiB/s | 803.0 KiB |  00m00s
[ 54/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.2 KiB |  00m00s
[ 55/154] Installing alternatives-0:1.2 100% |   0.0   B/s |  64.0 KiB |  00m00s
[ 56/154] Installing jansson-0:2.13.1-7 100% |   0.0   B/s |  85.6 KiB |  00m00s
[ 57/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.4 KiB |  00m00s
[ 58/154] Installing libunistring-0:1.1 100% | 435.6 MiB/s |   1.7 MiB |  00m00s
[ 59/154] Installing libidn2-0:2.3.4-3. 100% | 160.6 MiB/s | 328.9 KiB |  00m00s
[ 60/154] Installing libpsl-0:0.21.5-1. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 61/154] Installing zip-0:3.0-39.fc40. 100% | 349.2 MiB/s | 715.1 KiB |  00m00s
[ 62/154] Installing gdbm-1:1.23-4.fc39 100% | 233.1 MiB/s | 477.4 KiB |  00m00s
[ 63/154] Installing cyrus-sasl-lib-0:2 100% | 380.5 MiB/s |   2.3 MiB |  00m00s
[ 64/154] Installing zstd-0:1.5.5-4.fc3 100% | 407.7 MiB/s |   1.6 MiB |  00m00s
[ 65/154] Installing libfdisk-0:2.39.3- 100% | 355.5 MiB/s | 364.0 KiB |  00m00s
[ 66/154] Installing bzip2-0:1.0.8-16.f 100% |  93.7 MiB/s |  96.0 KiB |  00m00s
[ 67/154] Installing libxml2-0:2.12.4-3 100% | 424.9 MiB/s |   1.7 MiB |  00m00s
[ 68/154] Installing sqlite-libs-0:3.45 100% | 350.3 MiB/s |   1.4 MiB |  00m00s
[ 69/154] Installing ed-0:1.20-1.fc40.x 100% | 145.2 MiB/s | 148.7 KiB |  00m00s
[ 70/154] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.noar
[ 71/154] Installing cpio-0:2.15-1.fc40 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 72/154] Installing diffutils-0:3.10-3 100% | 315.6 MiB/s |   1.6 MiB |  00m00s
[ 73/154] Installing libgomp-0:14.0.1-0 100% | 506.9 MiB/s | 519.1 KiB |  00m00s
[ 74/154] Installing libpkgconf-0:1.9.5 100% |   0.0   B/s |  79.2 KiB |  00m00s
[ 75/154] Installing pkgconf-0:1.9.5-2. 100% |  84.2 MiB/s |  86.3 KiB |  00m00s
[ 76/154] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.7 KiB |  00m00s
[ 77/154] Installing libverto-0:0.3.2-6 100% |   0.0   B/s |  31.2 KiB |  00m00s
[ 78/154] Installing libffi-0:3.4.4-5.f 100% |  80.9 MiB/s |  82.9 KiB |  00m00s
[ 79/154] Installing p11-kit-0:0.25.3-1 100% | 301.2 MiB/s |   2.4 MiB |  00m00s
[ 80/154] Installing p11-kit-trust-0:0. 100% |  56.3 MiB/s | 461.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
[ 81/154] Installing xxhash-libs-0:0.8. 100% |  87.7 MiB/s |  89.8 KiB |  00m00s
[ 82/154] Installing libbrotli-0:1.1.0- 100% | 270.8 MiB/s | 831.8 KiB |  00m00s
[ 83/154] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB |  00m00s
[ 84/154] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 85/154] Installing pcre2-0:10.42-2.fc 100% | 310.0 MiB/s | 634.8 KiB |  00m00s
[ 86/154] Installing libselinux-0:3.6-4 100% | 170.2 MiB/s | 174.3 KiB |  00m00s
[ 87/154] Installing sed-0:4.8-14.fc39. 100% | 196.7 MiB/s | 805.9 KiB |  00m00s
[ 88/154] Installing grep-0:3.11-5.fc40 100% | 248.9 MiB/s |   1.0 MiB |  00m00s
[ 89/154] Installing findutils-1:4.9.0- 100% | 294.8 MiB/s |   1.5 MiB |  00m00s
[ 90/154] Installing xz-0:5.4.5-1.fc40. 100% | 285.9 MiB/s |   2.0 MiB |  00m00s
[ 91/154] Installing libmount-0:2.39.3- 100% | 172.5 MiB/s | 353.3 KiB |  00m00s
[ 92/154] Installing util-linux-core-0: 100% | 274.9 MiB/s |   1.4 MiB |  00m00s
[ 93/154] Installing patch-0:2.7.6-22.f 100% | 250.1 MiB/s | 256.1 KiB |  00m00s
[ 94/154] Installing tar-2:1.35-2.fc40. 100% | 371.3 MiB/s |   3.0 MiB |  00m00s
[ 95/154] Installing libsemanage-0:3.6- 100% | 144.2 MiB/s | 295.3 KiB |  00m00s
[ 96/154] Installing shadow-utils-2:4.1 100% | 155.6 MiB/s |   4.0 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-10.fc39.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-10.fc39.x86_64
[ 97/154] Installing libutempter-0:1.2. 100% |  58.2 MiB/s |  59.5 KiB |  00m00s
[ 98/154] Installing pkgconf-m4-0:1.9.5 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 99/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[100/154] Installing coreutils-common-0 100% | 409.4 MiB/s |  11.5 MiB |  00m00s
[101/154] Installing openssl-libs-1:3.1 100% | 432.9 MiB/s |   7.8 MiB |  00m00s
[102/154] Installing coreutils-0:9.4-3. 100% | 264.1 MiB/s |   5.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noar
[103/154] Installing ca-certificates-0: 100% |   4.1 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noa
[104/154] Installing krb5-libs-0:1.21.2 100% | 286.8 MiB/s |   2.3 MiB |  00m00s
[105/154] Installing libtirpc-0:1.3.4-1 100% | 199.7 MiB/s | 204.5 KiB |  00m00s
[106/154] Installing gzip-0:1.12-6.fc39 100% | 184.3 MiB/s | 377.5 KiB |  00m00s
>>> Running pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Stop pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
[107/154] Installing authselect-libs-0: 100% | 195.9 MiB/s |   1.0 MiB |  00m00s
[108/154] Installing authselect-0:1.5.0 100% |  78.6 MiB/s | 160.9 KiB |  00m00s
[109/154] Installing cracklib-0:2.9.11- 100% |  84.0 MiB/s | 257.9 KiB |  00m00s
[110/154] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB |  00m00s
[111/154] Installing libnsl2-0:2.0.0-6. 100% |  57.6 MiB/s |  59.0 KiB |  00m00s
[112/154] Installing pam-0:1.6.0-1.fc40 100% | 164.6 MiB/s |   1.8 MiB |  00m00s
[113/154] Installing libssh-0:0.10.6-2. 100% | 253.6 MiB/s | 519.3 KiB |  00m00s
[114/154] Installing rpm-sequoia-0:1.5. 100% | 384.3 MiB/s |   2.3 MiB |  00m00s
[115/154] Installing rpm-libs-0:4.19.1- 100% | 347.4 MiB/s | 711.6 KiB |  00m00s
[116/154] Installing libarchive-0:3.7.2 100% | 300.9 MiB/s | 924.5 KiB |  00m00s
[117/154] Installing libevent-0:2.1.12- 100% | 293.9 MiB/s | 903.0 KiB |  00m00s
[118/154] Installing openldap-0:2.6.6-1 100% | 210.0 MiB/s | 645.3 KiB |  00m00s
[119/154] Installing libcurl-0:8.5.0-2. 100% | 375.8 MiB/s | 769.7 KiB |  00m00s
[120/154] Installing elfutils-libs-0:0. 100% | 337.7 MiB/s | 691.6 KiB |  00m00s
[121/154] Installing elfutils-debuginfo 100% |  61.2 MiB/s |  62.7 KiB |  00m00s
[122/154] Installing binutils-0:2.41-30 100% | 388.3 MiB/s |  26.4 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-30.fc40.x86_64
>>> Stop post-install scriptlet: binutils-0:2.41-30.fc40.x86_64
[123/154] Installing binutils-gold-0:2. 100% | 184.6 MiB/s |   2.0 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-30.fc40.x86_64
>>> Stop post-install scriptlet: binutils-gold-0:2.41-30.fc40.x86_64
[124/154] Installing elfutils-0:0.190-4 100% | 401.8 MiB/s |   2.8 MiB |  00m00s
[125/154] Installing gdb-minimal-0:14.1 100% | 423.1 MiB/s |  12.3 MiB |  00m00s
[126/154] Installing debugedit-0:5.0-12 100% | 196.8 MiB/s | 201.5 KiB |  00m00s
[127/154] Installing rpm-build-libs-0:4 100% | 190.6 MiB/s | 195.2 KiB |  00m00s
[128/154] Installing curl-0:8.5.0-2.fc4 100% |  70.7 MiB/s | 796.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.1-4.fc40.x86_64
[129/154] Installing rpm-0:4.19.1-4.fc4 100% | 159.8 MiB/s |   2.4 MiB |  00m00s
[130/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[131/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[132/154] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[133/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.8 KiB |  00m00s
[134/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[135/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[136/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[137/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[138/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[139/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[140/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[141/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[142/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[143/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[144/154] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |   0.0   B/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |   0.0   B/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |   0.0   B/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  92.6 MiB/s | 189.6 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  88.8 MiB/s | 182.0 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.39. 100% | 222.1 MiB/s |   3.6 MiB |  00m00s
[153/154] Installing which-0:2.21-40.fc 100% |  80.4 MiB/s |  82.3 KiB |  00m00s
[154/154] Installing info-0:7.1-1.fc40. 100% | 440.5 KiB/s | 374.0 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.1-4.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
Warning: skipped PGP checks for 152 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-1.fc40.x86_64
ansible-srpm-macros-1-12.fc40.noarch
audit-libs-4.0-7.fc40.x86_64
authselect-1.5.0-1.fc40.x86_64
authselect-libs-1.5.0-1.fc40.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.26-1.fc40.x86_64
binutils-2.41-30.fc40.x86_64
binutils-gold-2.41-30.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-3.fc40.x86_64
coreutils-common-9.4-3.fc40.x86_64
cpio-2.15-1.fc40.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-2.fc40.x86_64
cyrus-sasl-lib-2.1.28-17.fc40.x86_64
debugedit-5.0-12.fc40.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.20-1.fc40.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.x86_64
elfutils-debuginfod-client-0.190-4.fc40.x86_64
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.x86_64
elfutils-libs-0.190-4.fc40.x86_64
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.29.noarch
fedora-release-common-40-0.29.noarch
fedora-release-identity-basic-40-0.29.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-3.fc40.x86_64
file-libs-5.45-3.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-4.9.0-6.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.3.0-1.fc40.x86_64
gdb-minimal-14.1-7.fc40.x86_64
gdbm-1.23-4.fc39.x86_64
gdbm-libs-1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-35.fc40.x86_64
glibc-common-2.38.9000-35.fc40.x86_64
glibc-gconv-extra-2.38.9000-35.fc40.x86_64
glibc-minimal-langpack-2.38.9000-35.fc40.x86_64
gmp-6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.1-1.fc40.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.3-1.fc40.x86_64
krb5-libs-1.21.2-3.fc40.x86_64
libacl-2.3.2-1.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.2-1.fc40.x86_64
libblkid-2.39.3-4.fc40.x86_64
libbrotli-1.1.0-3.fc40.x86_64
libcap-2.69-1.fc40.x86_64
libcap-ng-0.8.4-4.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.5.0-2.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.3-4.fc40.x86_64
libffi-3.4.4-5.fc40.x86_64
libgcc-14.0.1-0.3.fc40.x86_64
libgomp-14.0.1-0.3.fc40.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.3-4.fc40.x86_64
libnghttp2-1.59.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.5-1.fc40.x86_64
libpwquality-1.4.5-9.fc40.x86_64
libselinux-3.6-4.fc40.x86_64
libsemanage-3.6-3.fc40.x86_64
libsepol-3.6-3.fc40.x86_64
libsmartcols-2.39.3-4.fc40.x86_64
libssh-0.10.6-2.fc40.x86_64
libssh-config-0.10.6-2.fc40.noarch
libstdc++-14.0.1-0.3.fc40.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.4-1.rc1.fc40.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.3-4.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-4.fc40.x86_64
libxml2-2.12.4-3.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.1-1.fc40.x86_64
ncurses-base-6.4-9.20240113.fc40.noarch
ncurses-libs-6.4-9.20240113.fc40.x86_64
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.4-1.fc40.x86_64
p11-kit-0.25.3-1.fc40.x86_64
p11-kit-trust-0.25.3-1.fc40.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.6.0-1.fc40.x86_64
pam-libs-1.6.0-1.fc40.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-2.fc40.x86_64
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20240107-1.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-312.fc39.noarch
qt5-srpm-macros-5.15.12-1.fc40.noarch
qt6-srpm-macros-6.6.1-3.fc40.noarch
readline-8.2-7.fc40.x86_64
redhat-rpm-config-280-1.fc40.noarch
rpm-4.19.1-4.fc40.x86_64
rpm-build-4.19.1-4.fc40.x86_64
rpm-build-libs-4.19.1-4.fc40.x86_64
rpm-libs-4.19.1-4.fc40.x86_64
rpm-sequoia-1.5.0-2.fc40.x86_64
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.x86_64
sqlite-libs-3.45.0-1.fc40.x86_64
systemd-libs-255.3-1.fc40.x86_64
tar-1.35-2.fc40.x86_64
unzip-6.0-62.fc39.x86_64
util-linux-2.39.3-4.fc40.x86_64
util-linux-core-2.39.3-4.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.5-1.fc40.x86_64
xz-libs-5.4.5-1.fc40.x86_64
zig-srpm-macros-1-1.fc40.noarch
zip-3.0-39.fc40.x86_64
zlib-ng-compat-2.1.6-1.fc40.x86_64
zstd-1.5.5-4.fc39.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/avogadro2-libs-1.98.1-4.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706299090.170202/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-l066dlvq/avogadro2-libs/avogadro2-libs.spec) Config(child) 0 minutes 15 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.98.1-4.fc40.src.rpm)  Config(fedora-rawhide-x86_64)
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706299090.170202/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.18.2-1.fc38.x86_64
  rpm-sequoia-1.4.0-3.fc38.x86_64
  python3-dnf-4.18.2-1.fc38.noarch
  python3-dnf-plugins-core-4.4.4-1.fc38.noarch
  yum-4.18.2-1.fc38.noarch
  dnf5-5.1.11-1.fc38.x86_64
  dnf5-plugins-5.1.11-1.fc38.x86_64
Finish: chroot init
Start: build phase for avogadro2-libs-1.98.1-4.fc40.src.rpm
Start: build setup for avogadro2-libs-1.98.1-4.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/avogadro2-libs-1.98.1-4.fc40.src.rpm
Updating and loading repositories:
 fedora                                 100% | 526.7 KiB/s |  21.6 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 128.9 KiB/s |   4.1 KiB |  00m00s
 Copr repository                        100% |  93.9 KiB/s |   2.2 KiB |  00m00s
Repositories loaded.
Package                               Arch   Version                    Repository                                                         Size
Installing:                                                                                                                                    
 boost-devel                          x86_64 1.83.0-2.fc40              copr_base                                                     143.0 MiB
 chrpath                              x86_64 0.16-21.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.5 KiB
 cmake                                x86_64 3.27.7-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.6 MiB
 doxygen                              x86_64 2:1.10.0-2.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.1 MiB
 eigen3-devel                         noarch 3.4.0-12.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 gcc                                  x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.2 MiB
 gcc-c++                              x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.9 MiB
 glew-devel                           x86_64 2.2.0-5.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 graphviz                             x86_64 9.0.0-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.1 MiB
 hdf5-devel                           x86_64 1.12.1-15.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 jsoncpp-devel                        x86_64 1.9.5-5.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  79.8 KiB
 libarchive-devel                     x86_64 3.7.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.9 KiB
 make                                 x86_64 1:4.4.1-2.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 mesa-libGLU-devel                    x86_64 9.0.3-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.0 KiB
 mmtf-cpp-devel                       x86_64 1.1.0-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114.4 KiB
 openbabel-devel                      x86_64 3.1.1-24.fc40              copr_base                                                     865.4 KiB
 python3-devel                        x86_64 3.12.1-4.fc40              copr_base                                                       1.2 MiB
 qt5-qtbase-devel                     x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 MiB
 qt5-qtsvg-devel                      x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.7 KiB
 qt5-qttools-devel                    x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 934.1 KiB
 spglib-devel                         x86_64 2.1.0-1.fc40               copr_base                                                      54.1 KiB
Installing dependencies:                                                                                                                       
 abattis-cantarell-vf-fonts           noarch 0.301-10.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.3 KiB
 adobe-mappings-cmap                  noarch 20230622-1.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.4 MiB
 adobe-mappings-cmap-deprecated       noarch 20230622-1.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582.1 KiB
 adobe-mappings-pdf                   noarch 20190401-5.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.4 MiB
 annobin-docs                         noarch 12.38-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.6 KiB
 annobin-plugin-gcc                   x86_64 12.38-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 966.8 KiB
 avahi-libs                           x86_64 0.8-24.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 170.0 KiB
 boost                                x86_64 1.83.0-2.fc40              copr_base                                                       1.3 KiB
 boost-atomic                         x86_64 1.83.0-2.fc40              copr_base                                                      20.9 KiB
 boost-chrono                         x86_64 1.83.0-2.fc40              copr_base                                                      37.6 KiB
 boost-container                      x86_64 1.83.0-2.fc40              copr_base                                                      65.5 KiB
 boost-context                        x86_64 1.83.0-2.fc40              copr_base                                                      16.5 KiB
 boost-contract                       x86_64 1.83.0-2.fc40              copr_base                                                     103.2 KiB
 boost-coroutine                      x86_64 1.83.0-2.fc40              copr_base                                                      21.1 KiB
 boost-date-time                      x86_64 1.83.0-2.fc40              copr_base                                                      16.3 KiB
 boost-fiber                          x86_64 1.83.0-2.fc40              copr_base                                                      82.8 KiB
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 nss-sysinit                          x86_64 3.96.1-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.2 KiB
 nss-util                             x86_64 3.96.1-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.1 KiB
 openbabel-libs                       x86_64 3.1.1-24.fc40              copr_base                                                      14.6 MiB
 openblas                             x86_64 0.3.26-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp                      x86_64 0.3.26-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.3 MiB
 openjpeg2                            x86_64 2.5.0-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 405.1 KiB
 openssl-devel                        x86_64 1:3.1.4-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.1 MiB
 pango                                x86_64 1.51.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 pcre2-utf16                          x86_64 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 566.1 KiB
 perl-AutoLoader                      noarch 5.74-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                               x86_64 1.88-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.4 KiB
 perl-Carp                            noarch 1.54-500.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.5 KiB
 perl-Class-Struct                    noarch 0.68-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper                     x86_64 2.188-501.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.6 KiB
 perl-Digest                          noarch 1.20-500.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.2 KiB
 perl-Digest-MD5                      x86_64 2.59-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.7 KiB
 perl-DynaLoader                      x86_64 1.54-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                          x86_64 4:3.20-501.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 MiB
 perl-English                         noarch 1.11-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 KiB
 perl-Errno                           x86_64 1.37-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 KiB
 perl-Exporter                        noarch 5.78-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.2 KiB
 perl-Fcntl                           x86_64 1.15-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.6 KiB
 perl-File-Basename                   noarch 2.86-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Find                       noarch 1.43-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path                       noarch 2.18-501.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp                       noarch 1:0.231.100-501.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat                       noarch 1.13-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.7 KiB
 perl-FileHandle                      noarch 2.05-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long                     noarch 1:2.57-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.1 KiB
 perl-Getopt-Std                      noarch 1.13-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.1 KiB
 perl-HTTP-Tiny                       noarch 0.088-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.1 KiB
 perl-IO                              x86_64 1.52-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 151.0 KiB
 perl-IO-Socket-IP                    noarch 0.42-1.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.6 KiB
 perl-IO-Socket-SSL                   noarch 2.085-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 685.0 KiB
 perl-IPC-Open3                       noarch 1.22-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.4 KiB
 perl-MIME-Base64                     x86_64 3.16-501.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.0 KiB
 perl-Mozilla-CA                      noarch 20231213-1.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.2 KiB
 perl-Net-SSLeay                      x86_64 1.94-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 perl-POSIX                           x86_64 2.13-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.0 KiB
 perl-PathTools                       x86_64 3.89-500.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.5 KiB
 perl-Pod-Escapes                     noarch 1:1.07-501.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc                     noarch 3.28.01-501.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.1 KiB
 perl-Pod-Simple                      noarch 1:3.45-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 559.8 KiB
 perl-Pod-Usage                       noarch 4:2.03-500.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.7 KiB
 perl-Scalar-List-Utils               x86_64 5:1.63-500.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.4 KiB
 perl-SelectSaver                     noarch 1.02-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                          x86_64 4:2.037-3.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 127.5 KiB
 perl-Storable                        x86_64 1:3.32-500.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.3 KiB
 perl-Symbol                          noarch 1.09-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor                  noarch 5.01-502.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap                        noarch 1.18-500.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords                 noarch 3.31-500.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.5 KiB
 perl-Text-Tabs+Wrap                  noarch 2023.0511-3.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.4 KiB
 perl-Time-Local                      noarch 2:1.350-3.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.9 KiB
 perl-URI                             noarch 5.24-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 225.6 KiB
 perl-base                            noarch 2.27-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant                        noarch 1.33-501.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                              noarch 0.61.000-504.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter                     x86_64 4:5.38.2-504.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.8 KiB
 perl-libnet                          noarch 3.15-501.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.0 KiB
 perl-libs                            x86_64 4:5.38.2-504.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 MiB
 perl-locale                          noarch 1.10-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 KiB
 perl-mro                             x86_64 1.28-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.6 KiB
 perl-overload                        noarch 1.37-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading                     noarch 0.02-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                          noarch 1:0.241-500.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.7 KiB
 perl-podlators                       noarch 1:5.01-500.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB
 perl-vars                            noarch 1.05-504.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 pixman                               x86_64 0.43.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.1 KiB
 poppler                              x86_64 23.08.0-1.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 poppler-data                         noarch 0.4.11-5.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.3 MiB
 poppler-glib                         x86_64 23.08.0-1.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582.4 KiB
 pyproject-rpm-macros                 noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.8 KiB
 python-pip-wheel                     noarch 23.3.2-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python-rpm-macros                    noarch 3.12-312.fc39              copr_base                                                      21.3 KiB
 python3                              x86_64 3.12.1-4.fc40              copr_base                                                      31.9 KiB
 python3-libs                         x86_64 3.12.1-4.fc40              copr_base                                                      41.0 MiB
 python3-numpy                        x86_64 1:1.26.2-4.fc40            copr_base                                                      44.0 MiB
 python3-packaging                    noarch 23.2-4.fc40                copr_base                                                     421.1 KiB
 python3-rpm-generators               noarch 14-8.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  82.3 KiB
 python3-rpm-macros                   noarch 3.12-312.fc39              copr_base                                                       6.5 KiB
 qt-settings                          noarch 39.1-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 qt5-designer                         x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 487.9 KiB
 qt5-doctools                         x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 qt5-linguist                         x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 qt5-qtbase                           x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.0 MiB
 qt5-qtbase-common                    noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.0   B
 qt5-qtbase-gui                       x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.2 MiB
 qt5-qtdeclarative                    x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.7 MiB
 qt5-qtsvg                            x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 635.5 KiB
 qt5-qttools                          x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.5 KiB
 qt5-qttools-common                   noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.5 KiB
 qt5-qttools-libs-designer            x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 MiB
 qt5-qttools-libs-designercomponents  x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 qt5-qttools-libs-help                x86_64 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 461.0 KiB
 qt5-rpm-macros                       noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 rav1e-libs                           x86_64 0.6.6-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 rhash                                x86_64 1.4.3-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 352.5 KiB
 rsvg-pixbuf-loader                   x86_64 2.57.1-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.4 KiB
 shared-mime-info                     x86_64 2.3-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.2 MiB
 spglib                               x86_64 2.1.0-1.fc40               copr_base                                                       1.8 MiB
 svt-av1-libs                         x86_64 1.4.1-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.2 MiB
 tzdata                               noarch 2023d-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 urw-base35-bookman-fonts             noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 urw-base35-c059-fonts                noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 urw-base35-d050000l-fonts            noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.3 KiB
 urw-base35-fonts                     noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.3 KiB
 urw-base35-fonts-common              noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 urw-base35-gothic-fonts              noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 urw-base35-nimbus-mono-ps-fonts      noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 urw-base35-nimbus-roman-fonts        noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 urw-base35-nimbus-sans-fonts         noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 urw-base35-p052-fonts                noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  44.2 KiB
 urw-base35-z003-fonts                noarch 20200910-18.fc39           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB
 vim-filesystem                       noarch 2:9.1.031-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 vulkan-headers                       noarch 1.3.268.0-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.3 MiB
 vulkan-loader                        x86_64 1.3.268.0-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.3 KiB
 vulkan-loader-devel                  x86_64 1.3.268.0-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 KiB
 xapian-core-libs                     x86_64 1.4.23-1.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 xcb-util                             x86_64 0.4.1-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.3 KiB
 xcb-util-image                       x86_64 0.4.1-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 xcb-util-keysyms                     x86_64 0.4.1-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.7 KiB
 xcb-util-renderutil                  x86_64 0.3.10-3.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.4 KiB
 xcb-util-wm                          x86_64 0.4.2-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  85.2 KiB
 xkeyboard-config                     noarch 2.40-2.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 xml-common                           noarch 0.6.3-62.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xorg-x11-proto-devel                 noarch 2023.2-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 zlib-ng-compat-devel                 x86_64 2.1.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB

Transaction Summary:
 Installing:      326 packages

Total size of inbound packages is 311 MiB. Need to download 311 MiB.
After this operation 1 GiB will be used (install 1 GiB, remove 0 B).
[  1/326] chrpath-0:0.16-21.fc39.x86_64 100% | 904.4 KiB/s |  29.8 KiB |  00m00s
[  2/326] doxygen-2:1.10.0-2.fc40.x86_6 100% | 123.9 MiB/s |   5.3 MiB |  00m00s
[  3/326] cmake-0:3.27.7-1.fc40.x86_64  100% |  95.5 MiB/s |   8.0 MiB |  00m00s
[  4/326] gcc-c++-0:14.0.1-0.3.fc40.x86 100% | 149.9 MiB/s |  14.1 MiB |  00m00s
[  5/326] graphviz-0:9.0.0-10.fc40.x86_ 100% | 133.6 MiB/s |   4.9 MiB |  00m00s
[  6/326] boost-devel-0:1.83.0-2.fc40.x 100% |  48.6 MiB/s |  11.8 MiB |  00m00s
[  7/326] hdf5-devel-0:1.12.1-15.fc40.x 100% |  54.4 MiB/s |   1.3 MiB |  00m00s
[  8/326] jsoncpp-devel-0:1.9.5-5.fc39. 100% |   5.7 MiB/s |  29.2 KiB |  00m00s
[  9/326] gcc-0:14.0.1-0.3.fc40.x86_64  100% | 182.4 MiB/s |  36.7 MiB |  00m00s
[ 10/326] mesa-libGLU-devel-0:9.0.3-1.f 100% |   3.8 MiB/s |  11.8 KiB |  00m00s
[ 11/326] make-1:4.4.1-2.fc39.x86_64    100% |  14.6 MiB/s | 581.2 KiB |  00m00s
[ 12/326] mmtf-cpp-devel-0:1.1.0-3.fc39 100% |   9.9 MiB/s |  30.4 KiB |  00m00s
[ 13/326] libarchive-devel-0:3.7.2-1.fc 100% |   2.9 MiB/s | 126.5 KiB |  00m00s
[ 14/326] glew-devel-0:2.2.0-5.fc39.x86 100% |  35.3 MiB/s | 216.6 KiB |  00m00s
[ 15/326] eigen3-devel-0:3.4.0-12.fc39. 100% | 108.5 MiB/s |   1.1 MiB |  00m00s
[ 16/326] python3-devel-0:3.12.1-4.fc40 100% |  89.3 MiB/s | 274.4 KiB |  00m00s
[ 17/326] qt5-qtsvg-devel-0:5.15.12-1.f 100% |   6.5 MiB/s |  26.5 KiB |  00m00s
[ 18/326] qt5-qttools-devel-0:5.15.12-1 100% |  36.2 MiB/s | 185.3 KiB |  00m00s
[ 19/326] qt5-qtbase-devel-0:5.15.12-1. 100% | 196.2 MiB/s |   3.1 MiB |  00m00s
[ 20/326] openbabel-devel-0:3.1.1-24.fc 100% |   7.2 MiB/s | 191.7 KiB |  00m00s
[ 21/326] spglib-devel-0:2.1.0-1.fc40.x 100% |   1.5 MiB/s |  21.3 KiB |  00m00s
[ 22/326] boost-0:1.83.0-2.fc40.x86_64  100% |   1.0 MiB/s |  14.5 KiB |  00m00s
[ 23/326] boost-numpy3-0:1.83.0-2.fc40. 100% |   1.7 MiB/s |  30.2 KiB |  00m00s
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[190/326] lasi-0:1.1.3-11.fc39.x86_64   100% |  10.5 MiB/s |  53.6 KiB |  00m00s
[191/326] libXrender-0:0.9.11-4.fc40.x8 100% |   4.4 MiB/s |  26.9 KiB |  00m00s
[192/326] libgs-0:10.02.1-7.fc40.x86_64 100% | 186.6 MiB/s |   3.4 MiB |  00m00s
[193/326] librsvg2-0:2.57.1-1.fc40.x86_ 100% |  96.5 MiB/s |   1.6 MiB |  00m00s
[194/326] libwebp-0:1.3.2-2.fc40.x86_64 100% |  46.2 MiB/s | 283.8 KiB |  00m00s
[195/326] pango-0:1.51.0-1.fc40.x86_64  100% |  47.9 MiB/s | 343.2 KiB |  00m00s
[196/326] poppler-glib-0:23.08.0-1.fc39 100% |  36.1 MiB/s | 184.8 KiB |  00m00s
[197/326] urw-base35-fonts-0:20200910-1 100% |   3.4 MiB/s |  10.5 KiB |  00m00s
[198/326] libxcrypt-devel-0:4.4.36-4.fc 100% |   7.1 MiB/s |  29.0 KiB |  00m00s
[199/326] kernel-headers-0:6.8.0-0.rc1. 100% | 102.8 MiB/s |   1.4 MiB |  00m00s
[200/326] gnutls-0:3.8.3-2.fc40.x86_64  100% |  99.2 MiB/s |   1.1 MiB |  00m00s
[201/326] libGLEW-0:2.2.0-5.fc39.x86_64 100% |  34.2 MiB/s | 175.0 KiB |  00m00s
[202/326] shared-mime-info-0:2.3-2.fc40 100% |  76.3 MiB/s | 390.8 KiB |  00m00s
[203/326] libXpm-0:3.5.17-1.fc40.x86_64 100% |  15.9 MiB/s |  65.1 KiB |  00m00s
[204/326] libavif-0:0.11.1-12.fc40.x86_ 100% |  10.2 MiB/s |  83.8 KiB |  00m00s
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[206/326] libtiff-0:4.5.0-3.fc40.x86_64 100% |  49.6 MiB/s | 304.6 KiB |  00m00s
[207/326] libmpc-0:1.3.1-3.fc39.x86_64  100% |  17.2 MiB/s |  70.4 KiB |  00m00s
[208/326] fonts-filesystem-1:2.0.5-12.f 100% |   2.7 MiB/s |   8.2 KiB |  00m00s
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[210/326] xml-common-0:0.6.3-62.fc40.no 100% |   7.6 MiB/s |  31.0 KiB |  00m00s
[211/326] abattis-cantarell-vf-fonts-0: 100% |  23.6 MiB/s | 120.6 KiB |  00m00s
[212/326] xapian-core-libs-0:1.4.23-1.f 100% |  75.3 MiB/s | 770.7 KiB |  00m00s
[213/326] avahi-libs-0:0.8-24.fc39.x86_ 100% |  16.3 MiB/s |  66.8 KiB |  00m00s
[214/326] google-noto-sans-vf-fonts-0:2 100% |  81.4 MiB/s | 583.4 KiB |  00m00s
[215/326] libuv-1:1.47.0-3.fc40.x86_64  100% |  34.9 MiB/s | 250.0 KiB |  00m00s
[216/326] rhash-0:1.4.3-3.fc39.x86_64   100% |  31.6 MiB/s | 194.3 KiB |  00m00s
[217/326] cmake-data-0:3.27.7-1.fc40.no 100% |  96.6 MiB/s |   1.7 MiB |  00m00s
[218/326] flexiblas-netlib-0:3.4.1-1.fc 100% | 175.4 MiB/s |   3.2 MiB |  00m00s
[219/326] pixman-0:0.43.0-1.fc40.x86_64 100% |  13.4 MiB/s | 287.6 KiB |  00m00s
[220/326] clang-resource-filesystem-0:1 100% |   7.2 MiB/s |  14.8 KiB |  00m00s
[221/326] duktape-0:2.7.0-5.fc39.x86_64 100% |  27.7 MiB/s | 169.9 KiB |  00m00s
[222/326] xcb-util-0:0.4.1-3.fc39.x86_6 100% |   3.6 MiB/s |  18.5 KiB |  00m00s
[223/326] vulkan-headers-0:1.3.268.0-1. 100% |  89.4 MiB/s |   1.2 MiB |  00m00s
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[225/326] urw-base35-bookman-fonts-0:20 100% |  63.7 MiB/s | 847.3 KiB |  00m00s
[226/326] urw-base35-c059-fonts-0:20200 100% |  94.9 MiB/s | 874.4 KiB |  00m00s
[227/326] clang-libs-0:17.0.6-5.fc40.x8 100% |  51.9 MiB/s |  22.0 MiB |  00m00s
[228/326] urw-base35-d050000l-fonts-0:2 100% |   3.4 MiB/s |  76.1 KiB |  00m00s
[229/326] urw-base35-fonts-common-0:202 100% |   4.1 MiB/s |  21.2 KiB |  00m00s
[230/326] urw-base35-gothic-fonts-0:202 100% |  69.8 MiB/s | 642.9 KiB |  00m00s
[231/326] urw-base35-nimbus-mono-ps-fon 100% |  64.7 MiB/s | 795.1 KiB |  00m00s
[232/326] llvm-libs-0:17.0.6-2.fc40.x86 100% | 221.6 MiB/s |  27.0 MiB |  00m00s
[233/326] urw-base35-nimbus-roman-fonts 100% |  23.9 MiB/s | 856.3 KiB |  00m00s
[234/326] urw-base35-standard-symbols-p 100% |   5.1 MiB/s |  41.9 KiB |  00m00s
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[237/326] urw-base35-p052-fonts-0:20200 100% |  38.0 MiB/s | 973.6 KiB |  00m00s
[238/326] lcms2-0:2.16-2.fc40.x86_64    100% |  22.0 MiB/s | 180.1 KiB |  00m00s
[239/326] poppler-0:23.08.0-1.fc39.x86_ 100% |  86.6 MiB/s |   1.2 MiB |  00m00s
[240/326] nspr-0:4.35.0-17.fc40.x86_64  100% |  26.9 MiB/s | 137.7 KiB |  00m00s
[241/326] nss-0:3.96.1-1.fc40.x86_64    100% |  75.5 MiB/s | 695.6 KiB |  00m00s
[242/326] openjpeg2-0:2.5.0-5.fc40.x86_ 100% |  24.8 MiB/s | 177.8 KiB |  00m00s
[243/326] perl-overloading-0:0.02-504.f 100% |   4.3 MiB/s |  13.2 KiB |  00m00s
[244/326] perl-mro-0:1.28-504.fc40.x86_ 100% |   5.7 MiB/s |  29.1 KiB |  00m00s
[245/326] poppler-data-0:0.4.11-5.fc39. 100% | 131.8 MiB/s |   2.0 MiB |  00m00s
[246/326] perl-Pod-Perldoc-0:3.28.01-50 100% |  15.6 MiB/s |  80.1 KiB |  00m00s
[247/326] perl-podlators-1:5.01-500.fc3 100% |  19.6 MiB/s | 120.5 KiB |  00m00s
[248/326] perl-File-Temp-1:0.231.100-50 100% |  14.4 MiB/s |  58.9 KiB |  00m00s
[249/326] groff-base-0:1.23.0-4.fc40.x8 100% | 118.9 MiB/s |   1.1 MiB |  00m00s
[250/326] perl-HTTP-Tiny-0:0.088-3.fc39 100% |   9.0 MiB/s |  55.5 KiB |  00m00s
[251/326] perl-IPC-Open3-0:1.22-504.fc4 100% |   7.2 MiB/s |  22.1 KiB |  00m00s
[252/326] perl-Pod-Simple-1:3.45-4.fc39 100% |  50.9 MiB/s | 208.5 KiB |  00m00s
[253/326] perl-POSIX-0:2.13-504.fc40.x8 100% |  23.6 MiB/s |  96.8 KiB |  00m00s
[254/326] perl-IO-Socket-SSL-0:2.085-1. 100% |  43.8 MiB/s | 224.5 KiB |  00m00s
[255/326] perl-Mozilla-CA-0:20231213-1. 100% |   4.5 MiB/s |  13.8 KiB |  00m00s
[256/326] perl-Net-SSLeay-0:1.94-1.fc40 100% |  71.7 MiB/s | 367.3 KiB |  00m00s
[257/326] perl-Time-Local-2:1.350-3.fc3 100% |  11.2 MiB/s |  34.3 KiB |  00m00s
[258/326] fribidi-0:1.0.13-2.fc39.x86_6 100% |  29.5 MiB/s |  90.7 KiB |  00m00s
[259/326] libXft-0:2.3.8-4.fc40.x86_64  100% |  23.5 MiB/s |  72.2 KiB |  00m00s
[260/326] libthai-0:0.1.29-6.fc39.x86_6 100% |  52.1 MiB/s | 213.4 KiB |  00m00s
[261/326] crypto-policies-scripts-0:202 100% |  25.6 MiB/s | 104.7 KiB |  00m00s
[262/326] nss-softokn-0:3.96.1-1.fc40.x 100% |  80.8 MiB/s | 413.8 KiB |  00m00s
[263/326] nss-sysinit-0:3.96.1-1.fc40.x 100% |   6.0 MiB/s |  18.4 KiB |  00m00s
[264/326] nss-util-0:3.96.1-1.fc40.x86_ 100% |  21.3 MiB/s |  87.1 KiB |  00m00s
[265/326] msgpack-0:3.1.0-13.fc39.x86_6 100% |   9.6 MiB/s |  29.5 KiB |  00m00s
[266/326] libedit-0:3.1-48.20230828cvs. 100% |  34.9 MiB/s | 107.2 KiB |  00m00s
[267/326] libXau-devel-0:1.0.11-4.fc40. 100% |   4.4 MiB/s |  13.5 KiB |  00m00s
[268/326] libgudev-0:238-2.fc39.x86_64  100% |  11.2 MiB/s |  34.5 KiB |  00m00s
[269/326] jbigkit-libs-0:2.1-27.fc40.x8 100% |  17.3 MiB/s |  53.1 KiB |  00m00s
[270/326] libwacom-data-0:2.9.0-1.fc40. 100% |  28.8 MiB/s | 118.1 KiB |  00m00s
[271/326] liblerc-0:4.0.0-4.fc39.x86_64 100% |  49.1 MiB/s | 201.0 KiB |  00m00s
[272/326] libdatrie-0:0.2.13-7.fc39.x86 100% |  10.4 MiB/s |  31.9 KiB |  00m00s
[273/326] cairo-gobject-0:1.18.0-1.fc40 100% |   6.1 MiB/s |  18.6 KiB |  00m00s
[274/326] rsvg-pixbuf-loader-0:2.57.1-1 100% |   5.2 MiB/s |  16.1 KiB |  00m00s
[275/326] adobe-mappings-cmap-deprecate 100% |  22.1 MiB/s | 113.1 KiB |  00m00s
[276/326] hwdata-0:0.378-1.fc40.noarch  100% | 144.3 MiB/s |   1.6 MiB |  00m00s
[277/326] adobe-mappings-cmap-0:2023062 100% | 150.0 MiB/s |   2.1 MiB |  00m00s
[278/326] adobe-mappings-pdf-0:20190401 100% |  84.1 MiB/s | 688.8 KiB |  00m00s
[279/326] jbig2dec-libs-0:0.20-1.fc40.x 100% |  17.9 MiB/s |  73.4 KiB |  00m00s
[280/326] libijs-0:0.35-20.fc40.x86_64  100% |   5.7 MiB/s |  29.3 KiB |  00m00s
[281/326] libXt-0:1.3.0-1.fc40.x86_64   100% |  29.2 MiB/s | 179.1 KiB |  00m00s
[282/326] google-droid-sans-fonts-0:202 100% | 180.1 MiB/s |   2.7 MiB |  00m00s
[283/326] libpaper-1:2.1.1-1.fc39.x86_6 100% |   4.3 MiB/s |  26.7 KiB |  00m00s
[284/326] libdav1d-0:1.3.0-1.fc40.x86_6 100% |  99.7 MiB/s | 612.7 KiB |  00m00s
[285/326] libaom-0:3.8.0-1.fc40.x86_64  100% | 122.6 MiB/s |   1.8 MiB |  00m00s
[286/326] rav1e-libs-0:0.6.6-4.fc40.x86 100% | 102.8 MiB/s |   1.0 MiB |  00m00s
[287/326] svt-av1-libs-0:1.4.1-3.fc39.x 100% | 135.6 MiB/s |   2.0 MiB |  00m00s
[288/326] libvmaf-0:2.3.0-6.fc39.x86_64 100% |  25.1 MiB/s | 180.0 KiB |  00m00s
[289/326] libjxl-1:0.8.2-3.fc40.x86_64  100% | 108.0 MiB/s |   1.2 MiB |  00m00s
[290/326] google-noto-fonts-common-0:20 100% |   4.2 MiB/s |  17.3 KiB |  00m00s
[291/326] netpbm-0:11.02.00-5.fc40.x86_ 100% |  30.1 MiB/s | 184.8 KiB |  00m00s
[292/326] nettle-0:3.9.1-2.fc39.x86_64  100% |  82.9 MiB/s | 424.6 KiB |  00m00s
[293/326] emacs-filesystem-1:29.2-2.fc4 100% |   1.5 MiB/s |   7.6 KiB |  00m00s
[294/326] flexiblas-0:3.4.1-1.fc40.x86_ 100% |   2.7 MiB/s |  24.9 KiB |  00m00s
[295/326] flexiblas-openblas-openmp-0:3 100% |   2.1 MiB/s |  17.4 KiB |  00m00s
[296/326] vim-filesystem-2:9.1.031-1.fc 100% |   5.7 MiB/s |  17.5 KiB |  00m00s
[297/326] perl-Term-ANSIColor-0:5.01-50 100% |  15.5 MiB/s |  47.5 KiB |  00m00s
[298/326] perl-Term-Cap-0:1.18-500.fc39 100% |   5.3 MiB/s |  21.8 KiB |  00m00s
[299/326] perl-Pod-Escapes-1:1.07-501.f 100% |   6.3 MiB/s |  19.5 KiB |  00m00s
[300/326] perl-Text-Tabs+Wrap-0:2023.05 100% |   7.3 MiB/s |  22.4 KiB |  00m00s
[301/326] ncurses-0:6.4-9.20240113.fc40 100% |  67.6 MiB/s | 415.3 KiB |  00m00s
[302/326] perl-if-0:0.61.000-504.fc40.n 100% |   4.7 MiB/s |  14.3 KiB |  00m00s
[303/326] perl-locale-0:1.10-504.fc40.n 100% |   4.5 MiB/s |  14.0 KiB |  00m00s
[304/326] perl-AutoLoader-0:5.74-504.fc 100% |   7.0 MiB/s |  21.5 KiB |  00m00s
[305/326] perl-IO-Socket-IP-0:0.42-1.fc 100% |  13.5 MiB/s |  41.6 KiB |  00m00s
[306/326] perl-URI-0:5.24-1.fc40.noarch 100% |  36.8 MiB/s | 112.9 KiB |  00m00s
[307/326] nss-softokn-freebl-0:3.96.1-1 100% |  85.7 MiB/s | 351.0 KiB |  00m00s
[308/326] highway-0:1.0.7-1.fc40.x86_64 100% |  58.7 MiB/s | 480.8 KiB |  00m00s
[309/326] perl-Data-Dumper-0:2.188-501. 100% |   9.1 MiB/s |  56.0 KiB |  00m00s
[310/326] perl-libnet-0:3.15-501.fc39.n 100% |  19.9 MiB/s | 122.5 KiB |  00m00s
[311/326] perl-B-0:1.88-504.fc40.x86_64 100% |  24.6 MiB/s | 176.2 KiB |  00m00s
[312/326] openblas-openmp-0:0.3.26-1.fc 100% | 209.4 MiB/s |   5.0 MiB |  00m00s
[313/326] openblas-0:0.3.26-1.fc40.x86_ 100% |   5.4 MiB/s |  38.4 KiB |  00m00s
[314/326] perl-Digest-MD5-0:2.59-1.fc40 100% |   5.8 MiB/s |  35.6 KiB |  00m00s
[315/326] perl-Digest-0:1.20-500.fc39.n 100% |   8.0 MiB/s |  24.7 KiB |  00m00s
[316/326] perl-FileHandle-0:2.05-504.fc 100% |   3.9 MiB/s |  15.8 KiB |  00m00s
[317/326] pyproject-rpm-macros-0:1.12.0 100% |  10.1 MiB/s |  41.4 KiB |  00m00s
[318/326] gcc-plugin-annobin-0:14.0.1-0 100% |   8.4 MiB/s |  34.3 KiB |  00m00s
[319/326] python-rpm-macros-0:3.12-312. 100% |   7.5 MiB/s |  15.4 KiB |  00m00s
[320/326] python3-rpm-macros-0:3.12-312 100% |   3.4 MiB/s |  10.5 KiB |  00m00s
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[322/326] python3-packaging-0:23.2-4.fc 100% |  22.6 MiB/s | 116.0 KiB |  00m00s
[323/326] openssl-devel-1:3.1.4-1.fc40. 100% | 100.9 MiB/s |   2.5 MiB |  00m00s
[324/326] cmake-rpm-macros-0:3.27.7-1.f 100% |   2.3 MiB/s |  18.5 KiB |  00m00s
[325/326] annobin-plugin-gcc-0:12.38-1. 100% |  85.0 MiB/s | 957.3 KiB |  00m00s
[326/326] annobin-docs-0:12.38-1.fc40.n 100% |  29.2 MiB/s |  89.6 KiB |  00m00s
--------------------------------------------------------------------------------
[326/326] Total                         100% | 191.0 MiB/s | 311.1 MiB |  00m02s
Running transaction
[  1/328] Verify package files          100% | 357.0   B/s | 326.0   B |  00m01s
[  2/328] Prepare transaction           100% |   1.5 KiB/s | 326.0   B |  00m00s
[  3/328] Installing cmake-filesystem-0 100% |   7.1 MiB/s |   7.3 KiB |  00m00s
[  4/328] Installing libpng-2:1.6.40-1. 100% | 233.4 MiB/s | 239.0 KiB |  00m00s
[  5/328] Installing boost-system-0:1.8 100% |   0.0   B/s |  17.3 KiB |  00m00s
[  6/328] Installing boost-chrono-0:1.8 100% |   0.0   B/s |  38.6 KiB |  00m00s
[  7/328] Installing nspr-0:4.35.0-17.f 100% | 314.7 MiB/s | 322.2 KiB |  00m00s
[  8/328] Installing libjpeg-turbo-0:2. 100% | 319.4 MiB/s | 654.1 KiB |  00m00s
[  9/328] Installing libicu-0:73.2-3.fc 100% | 417.4 MiB/s |  36.3 MiB |  00m00s
[ 10/328] Installing expat-0:2.5.0-3.fc 100% | 270.1 MiB/s | 276.6 KiB |  00m00s
[ 11/328] Installing boost-thread-0:1.8 100% | 134.5 MiB/s | 137.8 KiB |  00m00s
[ 12/328] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
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[ 14/328] Installing libglvnd-1:1.7.0-1 100% | 382.6 MiB/s | 783.7 KiB |  00m00s
[ 15/328] Installing qt5-qttools-common 100% |   0.0   B/s |   7.9 KiB |  00m00s
[ 16/328] Installing nss-util-0:3.96.1- 100% | 217.9 MiB/s | 223.1 KiB |  00m00s
[ 17/328] Installing libmpc-0:1.3.1-3.f 100% | 162.2 MiB/s | 166.1 KiB |  00m00s
[ 18/328] Installing libwebp-0:1.3.2-2. 100% | 255.7 MiB/s | 785.5 KiB |  00m00s
[ 19/328] Installing libX11-xcb-0:1.8.7 100% |   0.0   B/s |  15.8 KiB |  00m00s
[ 20/328] Installing libgfortran-0:14.0 100% | 420.4 MiB/s |   2.9 MiB |  00m00s
[ 21/328] Installing boost-regex-0:1.83 100% | 265.6 MiB/s | 272.0 KiB |  00m00s
[ 22/328] Installing python-rpm-macros- 100% |   0.0   B/s |  22.1 KiB |  00m00s
[ 23/328] Installing libICE-0:1.1.1-1.f 100% | 182.1 MiB/s | 186.5 KiB |  00m00s
[ 24/328] Installing libquadmath-0:14.0 100% | 323.3 MiB/s | 331.1 KiB |  00m00s
[ 25/328] Installing boost-context-0:1. 100% |   0.0   B/s |  17.5 KiB |  00m00s
[ 26/328] Installing boost-atomic-0:1.8 100% |   0.0   B/s |  21.9 KiB |  00m00s
[ 27/328] Installing boost-filesystem-0 100% | 145.1 MiB/s | 148.6 KiB |  00m00s
[ 28/328] Installing libSM-0:1.2.4-1.fc 100% |   0.0   B/s |  98.6 KiB |  00m00s
[ 29/328] Installing python3-rpm-macros 100% |   0.0   B/s |   6.8 KiB |  00m00s
[ 30/328] Installing libglvnd-opengl-1: 100% | 169.6 MiB/s | 173.6 KiB |  00m00s
[ 31/328] Installing adobe-mappings-cma 100% | 400.4 MiB/s |  14.4 MiB |  00m00s
[ 32/328] Installing openjpeg2-0:2.5.0- 100% | 198.8 MiB/s | 407.1 KiB |  00m00s
[ 33/328] Installing lcms2-0:2.16-2.fc4 100% | 412.6 MiB/s | 422.5 KiB |  00m00s
[ 34/328] Installing libtool-ltdl-0:2.4 100% |   0.0   B/s |  67.3 KiB |  00m00s
[ 35/328] Installing libaec-0:1.0.6-5.f 100% | 118.3 MiB/s | 121.1 KiB |  00m00s
[ 36/328] Installing jsoncpp-0:1.9.5-5. 100% | 124.4 MiB/s | 254.8 KiB |  00m00s
[ 37/328] Installing xorg-x11-proto-dev 100% | 292.7 MiB/s |   1.8 MiB |  00m00s
[ 38/328] Installing libevdev-0:1.13.1- 100% | 120.3 MiB/s | 123.2 KiB |  00m00s
[ 39/328] Installing libXau-0:1.0.11-4. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 40/328] Installing libxcb-0:1.16-2.fc 100% | 275.5 MiB/s |   1.1 MiB |  00m00s
[ 41/328] Installing libxshmfence-0:1.3 100% |   0.0   B/s |  16.1 KiB |  00m00s
[ 42/328] Installing libwayland-server- 100% |  89.5 MiB/s |  91.6 KiB |  00m00s
[ 43/328] Installing dbus-libs-1:1.14.1 100% | 365.2 MiB/s | 373.9 KiB |  00m00s
[ 44/328] Installing mesa-libglapi-0:24 100% | 165.4 MiB/s | 169.3 KiB |  00m00s
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[ 46/328] Installing boost-container-0: 100% |   0.0   B/s |  66.5 KiB |  00m00s
[ 47/328] Installing boost-json-0:1.83. 100% | 318.4 MiB/s | 326.0 KiB |  00m00s
[ 48/328] Installing boost-wave-0:1.83. 100% | 311.0 MiB/s | 636.9 KiB |  00m00s
[ 49/328] Installing avahi-libs-0:0.8-2 100% | 168.5 MiB/s | 172.5 KiB |  00m00s
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[ 51/328] Installing xcb-util-renderuti 100% |   0.0   B/s |  29.8 KiB |  00m00s
[ 52/328] Installing xcb-util-wm-0:0.4. 100% |  85.2 MiB/s |  87.2 KiB |  00m00s
[ 53/328] Installing xcb-util-0:0.4.1-3 100% |   0.0   B/s |  35.7 KiB |  00m00s
[ 54/328] Installing xcb-util-image-0:0 100% |  23.0 MiB/s |  23.5 KiB |  00m00s
[ 55/328] Installing libXau-devel-0:1.0 100% |   2.7 MiB/s |   8.2 KiB |  00m00s
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[ 57/328] Installing hdf5-0:1.12.1-15.f 100% | 380.5 MiB/s |   8.4 MiB |  00m00s
[ 58/328] Installing libaec-devel-0:1.0 100% |   0.0   B/s |  11.9 KiB |  00m00s
[ 59/328] Installing adobe-mappings-cma 100% | 285.7 MiB/s | 585.2 KiB |  00m00s
[ 60/328] Installing mesa-libGLU-0:9.0. 100% | 350.2 MiB/s | 358.6 KiB |  00m00s
[ 61/328] Installing pyproject-rpm-macr 100% |  98.4 MiB/s | 100.8 KiB |  00m00s
[ 62/328] Installing boost-fiber-0:1.83 100% |  81.8 MiB/s |  83.7 KiB |  00m00s
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[ 64/328] Installing boost-coroutine-0: 100% |   0.0   B/s |  22.2 KiB |  00m00s
[ 65/328] Installing boost-graph-0:1.83 100% | 335.3 MiB/s | 343.4 KiB |  00m00s
[ 66/328] Installing cpp-0:14.0.1-0.3.f 100% | 399.3 MiB/s |  34.7 MiB |  00m00s
[ 67/328] Installing nss-softokn-freebl 100% | 267.5 MiB/s | 821.8 KiB |  00m00s
[ 68/328] Installing nss-softokn-0:3.96 100% | 380.3 MiB/s |   1.9 MiB |  00m00s
[ 69/328] Installing urw-base35-bookman 100% | 113.7 MiB/s |   1.4 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-bookman-fonts-0:20200910-18.fc39.
>>> Stop post-install scriptlet: urw-base35-bookman-fonts-0:20200910-18.fc39.noa
[ 70/328] Installing urw-base35-c059-fo 100% | 174.4 MiB/s |   1.4 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39.noa
>>> Stop post-install scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39.noarch
[ 71/328] Installing urw-base35-d050000 100% |  16.7 MiB/s |  85.4 KiB |  00m00s
>>> Running post-install scriptlet: urw-base35-d050000l-fonts-0:20200910-18.fc39
>>> Stop post-install scriptlet: urw-base35-d050000l-fonts-0:20200910-18.fc39.no
[ 72/328] Installing urw-base35-gothic- 100% | 166.1 MiB/s |   1.2 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39.n
>>> Stop post-install scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39.noar
[ 73/328] Installing urw-base35-nimbus- 100% | 150.3 MiB/s |   1.1 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910-1
>>> Stop post-install scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910-18.f
[ 74/328] Installing urw-base35-nimbus- 100% | 170.7 MiB/s |   1.4 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-18.
>>> Stop post-install scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-18.fc3
[ 75/328] Installing urw-base35-nimbus- 100% | 239.4 MiB/s |   2.4 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-18.f
>>> Stop post-install scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-18.fc39
[ 76/328] Installing urw-base35-p052-fo 100% | 212.5 MiB/s |   1.5 MiB |  00m00s
>>> Running post-install scriptlet: urw-base35-p052-fonts-0:20200910-18.fc39.noa
>>> Stop post-install scriptlet: urw-base35-p052-fonts-0:20200910-18.fc39.noarch
[ 77/328] Installing urw-base35-standar 100% |   8.8 MiB/s |  45.1 KiB |  00m00s
>>> Running post-install scriptlet: urw-base35-standard-symbols-ps-fonts-0:20200
>>> Stop post-install scriptlet: urw-base35-standard-symbols-ps-fonts-0:20200910
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>>> Running post-install scriptlet: urw-base35-z003-fonts-0:20200910-18.fc39.noa
>>> Stop post-install scriptlet: urw-base35-z003-fonts-0:20200910-18.fc39.noarch
[ 79/328] Installing urw-base35-fonts-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 80/328] Installing abattis-cantarell- 100% | 189.5 MiB/s | 194.1 KiB |  00m00s
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[ 93/328] Installing ncurses-0:6.4-9.20 100% | 204.2 MiB/s | 627.4 KiB |  00m00s
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>>> Running post-install scriptlet: shared-mime-info-0:2.3-2.fc40.x86_64
>>> Stop post-install scriptlet: shared-mime-info-0:2.3-2.fc40.x86_64
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[101/328] Installing cups-libs-1:2.4.7- 100% | 302.9 MiB/s | 620.4 KiB |  00m00s
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[104/328] Installing google-noto-fonts- 100% |   0.0   B/s |  18.1 KiB |  00m00s
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[106/328] Installing default-fonts-core 100% |  17.8 MiB/s |  18.2 KiB |  00m00s
[107/328] Installing google-droid-sans- 100% | 391.1 MiB/s |   6.3 MiB |  00m00s
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[110/328] Installing libvmaf-0:2.3.0-6. 100% | 381.3 MiB/s | 780.9 KiB |  00m00s
[111/328] Installing libaom-0:3.8.0-1.f 100% | 422.1 MiB/s |   5.1 MiB |  00m00s
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[113/328] Installing rav1e-libs-0:0.6.6 100% | 437.0 MiB/s |   3.1 MiB |  00m00s
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[115/328] Installing libavif-0:0.11.1-1 100% | 161.0 MiB/s | 164.9 KiB |  00m00s
[116/328] Installing libpaper-1:2.1.1-1 100% |   0.0   B/s |  50.7 KiB |  00m00s
[117/328] Installing libijs-0:0.35-20.f 100% |   0.0   B/s |  62.6 KiB |  00m00s
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[119/328] Installing adobe-mappings-pdf 100% | 439.6 MiB/s |   4.4 MiB |  00m00s
[120/328] Installing hwdata-0:0.378-1.f 100% | 562.5 MiB/s |   9.0 MiB |  00m00s
[121/328] Installing libpciaccess-0:0.1 100% |   0.0   B/s |  49.9 KiB |  00m00s
[122/328] Installing libdrm-0:2.4.120-1 100% | 198.2 MiB/s | 405.8 KiB |  00m00s
[123/328] Installing mesa-libgbm-0:24.0 100% |  64.6 MiB/s |  66.2 KiB |  00m00s
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[125/328] Installing libthai-0:0.1.29-6 100% | 381.4 MiB/s | 781.2 KiB |  00m00s
[126/328] Installing liblerc-0:4.0.0-4. 100% | 289.5 MiB/s | 592.9 KiB |  00m00s
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[128/328] Installing libtiff-0:4.5.0-3. 100% | 280.8 MiB/s |   1.1 MiB |  00m00s
[129/328] Installing libwacom-data-0:2. 100% |  82.9 MiB/s | 678.8 KiB |  00m00s
[130/328] Installing libedit-0:3.1-48.2 100% | 247.5 MiB/s | 253.5 KiB |  00m00s
[131/328] Installing llvm-libs-0:17.0.6 100% | 482.5 MiB/s | 117.7 MiB |  00m00s
[132/328] Installing msgpack-0:3.1.0-13 100% |  30.1 MiB/s |  61.6 KiB |  00m00s
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[134/328] Installing fribidi-0:1.0.13-2 100% |  40.3 MiB/s | 371.6 KiB |  00m00s
>>> Running pre-install scriptlet: groff-base-0:1.23.0-4.fc40.x86_64
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-4.fc40.x86_64
[135/328] Installing groff-base-0:1.23. 100% | 203.0 MiB/s |   3.9 MiB |  00m00s
>>> Running post-install scriptlet: groff-base-0:1.23.0-4.fc40.x86_64
>>> Stop post-install scriptlet: groff-base-0:1.23.0-4.fc40.x86_64
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[143/328] Installing perl-URI-0:5.24-1. 100% | 115.7 MiB/s | 237.0 KiB |  00m00s
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[152/328] Installing perl-IO-Socket-IP- 100% |  98.1 MiB/s | 100.4 KiB |  00m00s
[153/328] Installing perl-IO-Socket-SSL 100% | 336.4 MiB/s | 689.0 KiB |  00m00s
[154/328] Installing perl-Class-Struct- 100% |   0.0   B/s |  25.9 KiB |  00m00s
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[158/328] Installing perl-IPC-Open3-0:1 100% |   0.0   B/s |  23.3 KiB |  00m00s
[159/328] Installing perl-POSIX-0:2.13- 100% | 224.9 MiB/s | 230.3 KiB |  00m00s
[160/328] Installing perl-Pod-Simple-1: 100% | 278.0 MiB/s | 569.4 KiB |  00m00s
[161/328] Installing perl-HTTP-Tiny-0:0 100% | 150.6 MiB/s | 154.2 KiB |  00m00s
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[180/328] Installing perl-MIME-Base64-0 100% |  47.1 MiB/s |  48.2 KiB |  00m00s
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[182/328] Installing perl-Storable-1:3. 100% | 228.4 MiB/s | 233.9 KiB |  00m00s
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[191/328] Installing perl-libs-4:5.38.2 100% | 284.1 MiB/s |   9.9 MiB |  00m00s
[192/328] Installing perl-interpreter-4 100% | 118.6 MiB/s | 121.4 KiB |  00m00s
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[196/328] Installing vulkan-loader-0:1. 100% | 245.6 MiB/s | 502.9 KiB |  00m00s
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>>> Running pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch
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>>> Running post-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
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>>> Running pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
>>> Stop pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
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>>> Running post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
>>> Stop post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
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>>> Running post-install scriptlet: libinput-0:1.25.0-1.fc40.x86_64
>>> Stop post-install scriptlet: libinput-0:1.25.0-1.fc40.x86_64
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>>> Running post-install scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Stop post-install scriptlet: nss-0:3.96.1-1.fc40.x86_64
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
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[310/328] Installing gcc-c++-0:14.0.1-0 100% | 425.7 MiB/s |  37.9 MiB |  00m00s
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[312/328] Installing qt5-qtbase-devel-0 100% | 247.6 MiB/s |  19.6 MiB |  00m00s
[313/328] Installing qt5-qtsvg-devel-0: 100% |  43.4 MiB/s |  88.8 KiB |  00m00s
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[315/328] Installing spglib-devel-0:2.1 100% |   2.9 MiB/s |  55.6 KiB |  00m00s
[316/328] Installing boost-devel-0:1.83 100% | 298.7 MiB/s | 145.8 MiB |  00m00s
[317/328] Installing hdf5-devel-0:1.12. 100% | 354.3 MiB/s |   3.9 MiB |  00m00s
[318/328] Installing gcc-plugin-annobin 100% |   4.8 MiB/s |  58.6 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[319/328] Installing annobin-plugin-gcc 100% |  63.0 MiB/s | 968.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[320/328] Installing python3-devel-0:3. 100% | 182.2 MiB/s |   1.3 MiB |  00m00s
[321/328] Installing doxygen-2:1.10.0-2 100% | 402.9 MiB/s |  18.1 MiB |  00m00s
[322/328] Installing openbabel-devel-0: 100% | 215.3 MiB/s | 881.7 KiB |  00m00s
[323/328] Installing glew-devel-0:2.2.0 100% | 452.6 MiB/s |   1.8 MiB |  00m00s
[324/328] Installing mmtf-cpp-devel-0:1 100% | 114.3 MiB/s | 117.0 KiB |  00m00s
[325/328] Installing libarchive-devel-0 100% | 181.1 MiB/s | 185.5 KiB |  00m00s
[326/328] Installing jsoncpp-devel-0:1. 100% |  40.4 MiB/s |  82.7 KiB |  00m00s
[327/328] Installing eigen3-devel-0:3.4 100% | 312.0 MiB/s |   8.4 MiB |  00m00s
[328/328] Installing chrpath-0:0.16-21. 100% |  82.6 KiB/s |  56.3 KiB |  00m01s
>>> Running post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-18.f
>>> Stop post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-18.fc39
>>> Running post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39
>>> Stop post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-18.fc39.no
>>> Running post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-18.
>>> Stop post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-18.fc3
>>> Running post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc
>>> Stop post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39.
>>> Running post-transaction scriptlet: urw-base35-nimbus-mono-ps-fonts-0:202009
>>> Stop post-transaction scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910-
>>> Running post-transaction scriptlet: urw-base35-nimbus-roman-fonts-0:20200910
>>> Stop post-transaction scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-18
>>> Running post-transaction scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-
>>> Stop post-transaction scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-18.
>>> Running post-transaction scriptlet: urw-base35-p052-fonts-0:20200910-18.fc39
>>> Stop post-transaction scriptlet: urw-base35-p052-fonts-0:20200910-18.fc39.no
>>> Running post-transaction scriptlet: urw-base35-standard-symbols-ps-fonts-0:2
>>> Stop post-transaction scriptlet: urw-base35-standard-symbols-ps-fonts-0:2020
>>> Running post-transaction scriptlet: urw-base35-z003-fonts-0:20200910-18.fc39
>>> Stop post-transaction scriptlet: urw-base35-z003-fonts-0:20200910-18.fc39.no
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Running post-transaction scriptlet: crypto-policies-scripts-0:20231204-1.git
>>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20231204-1.git1e3
>>> Running post-transaction scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Stop post-transaction scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.0-6.fc40.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.0-6.fc40.x86_64
>>> Running trigger-install scriptlet: shared-mime-info-0:2.3-2.fc40.x86_64
>>> Stop trigger-install scriptlet: shared-mime-info-0:2.3-2.fc40.x86_64
>>> Running trigger-install scriptlet: gdk-pixbuf2-0:2.42.10-6.fc40.x86_64
>>> Stop trigger-install scriptlet: gdk-pixbuf2-0:2.42.10-6.fc40.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Running trigger-install scriptlet: graphviz-0:9.0.0-10.fc40.x86_64
>>> Stop trigger-install scriptlet: graphviz-0:9.0.0-10.fc40.x86_64
Warning: skipped PGP checks for 326 package(s).
Finish: build setup for avogadro2-libs-1.98.1-4.fc40.src.rpm
Start: rpmbuild avogadro2-libs-1.98.1-4.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706140800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mJ5Obq
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf avogadrolibs-1.98.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.98.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd avogadrolibs-1.98.1
+ rm -rf /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.98.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ tar -xf /builddir/build/SOURCES/molecules-1.98.0.tar.gz
+ mv molecules-1.98.0 molecules
+ tar -xf /builddir/build/SOURCES/crystals-1.98.0.tar.gz
+ mv crystals-1.98.0 crystals
+ mv molecules/LICENSE molecules/LICENSE-molecules
+ echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):'
Patch #0 (avogadro2-libs-set_pythonpath.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0
patching file avogadro/qtplugins/quantuminput/CMakeLists.txt
Hunk #1 succeeded at 34 (offset -7 lines).
patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -4 lines).
Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):
+ echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0
patching file avogadro/qtplugins/insertfragment/CMakeLists.txt
Hunk #1 succeeded at 11 (offset -2 lines).
Patch #2 (avogadro2-libs-1.98.1-use_upstream_cmake_config.patch):
+ echo 'Patch #2 (avogadro2-libs-1.98.1-use_upstream_cmake_config.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0
patching file CMakeLists.txt
patching file avogadro/core/CMakeLists.txt
patching file cmake/FindEigen3.cmake
patching file avogadro/core/CMakeLists.txt
patching file cmake/FindSPGLIB.cmake
+ mv avogenerators-1.98.0 avogadrogenerators
+ mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md
+ sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt
+ mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.t7lRKo
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd avogadrolibs-1.98.1
+ mkdir -p build
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.12 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF
-- The C compiler identification is GNU 14.0.1
-- The CXX compiler identification is GNU 14.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Could not use git to determine source version, using version 1.98.1
-- Component omp of Spglib: NOT FOUND
-- Component fortran of Spglib: NOT FOUND
-- Found package: Spglib
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") found components: C 
-- Found MMTF: /usr/include  
-- Found OpenGL: /usr/lib64/libOpenGL.so   
-- Found GLEW: /usr/include (found version "2.2.0") 
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.1", minimum required is "3") 
We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py
We have /builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/terachem.py
-- Found LibArchive: /usr/lib64/libarchive.so (found version "3.7.2") 
-- Found Doxygen: /usr/bin/doxygen (found version "1.10.0") found components: doxygen dot 
-- Configuring done (1.3s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    ENABLE_GLSL
    ENABLE_PYTHON
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
    USE_BOOST_PYTHON
    USE_MOLEQUEUE


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In file included from /usr/include/eigen3/Eigen/Core:257,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:8:
In member function ‘Eigen::internal::mul_assign_op<double, double>::assignCoeff(double&, double const&) const’,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16,
    inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35,
    inlined from ‘Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92,
    inlined from ‘Eigen::internal::call_dense_assignment_loop<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from ‘Eigen::internal::Assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘Eigen::internal::call_assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&, Eigen::internal::enable_if<!Eigen::internal::evaluator_assume_aliasing<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator_traits<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27,
    inlined from ‘Eigen::DenseBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:113:18:
/usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; }
      |                                                                                                    ~~^~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here
   70 |   Vector3 pos3d;
      |           ^~~~~
In file included from /usr/include/c++/14/istream:41,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:6:
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:173:76:
/usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized]
  229 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:181:76:
/usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  229 |    make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
   { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:189:76:
/usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  229 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -MF CMakeFiles/Core.dir/elements.cpp.o.d -o CMakeFiles/Core.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elements.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/cube.cpp.o -MF CMakeFiles/Core.dir/cube.cpp.o.d -o CMakeFiles/Core.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color="
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[  3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF CMakeFiles/Core.dir/crystaltools.cpp.o.d -o CMakeFiles/Core.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp
In file included from /usr/include/c++/14/vector:66,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:6:
In member function ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::resize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned long const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:676:16,
    inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:666:6:
/usr/include/c++/14/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/vector:72:
/usr/include/c++/14/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’:
/usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > > >, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  700 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:676:16: note: ‘<anonymous>’ declared here
  676 |   output.resize(coords.size());
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In member function ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::resize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned long const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:647:16,
    inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:640:6:
/usr/include/c++/14/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’:
/usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > > >, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  700 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:647:16: note: ‘<anonymous>’ declared here
  647 |   coords.resize(molecule.atomCount());
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/graph.cpp.o -MF CMakeFiles/Core.dir/graph.cpp.o.d -o CMakeFiles/Core.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized]
  311 |     if (m_edgeMap[b][i] == edgeIndex) {
      |     ^~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here
  299 |   size_t edgeIndex;
      |          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(long unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized]
  421 |   *changeTo2[0] = edgeIndex2;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2]’ was declared here
  392 |   std::array<size_t*, 2> changeTo2;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  422 |   *changeTo2[1] = edgeIndex2;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ was declared here
  392 |   std::array<size_t*, 2> changeTo2;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(long unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized]
  423 |   *changeTo1[0] = edgeIndex1;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1]’ was declared here
  405 |   std::array<size_t*, 2> changeTo1;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  424 |   *changeTo1[1] = edgeIndex1;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ was declared here
  405 |   std::array<size_t*, 2> changeTo1;
      |                          ^~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -MF CMakeFiles/Core.dir/mesh.cpp.o.d -o CMakeFiles/Core.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:189:46:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.195873].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:189:46: note: ‘<anonymous>’ declared here
  189 |   Array<Vector3> planarList(m_vertices.size());
      |                                              ^
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In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:793:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder]
  793 |   Array<unsigned char> m_atomicNumbers;
      |                        ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786:19: warning:   ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder]
  786 |   Eigen::VectorXd m_frozenAtomMask;
      |                   ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:35:1: warning:   when initialized here [-Wreorder]
   35 | Molecule::Molecule(const Molecule& other)
      | ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:793:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder]
  793 |   Array<unsigned char> m_atomicNumbers;
      |                        ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786:19: warning:   ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder]
  786 |   Eigen::VectorXd m_frozenAtomMask;
      |                   ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:77:1: warning:   when initialized here [-Wreorder]
   77 | Molecule::Molecule(Molecule&& other) noexcept
      | ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtom(Avogadro::Index, bool)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:281:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  281 |   if (m_frozenAtomMask.rows() != 3*m_atomicNumbers.size())
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:290:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  290 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘bool Avogadro::Core::Molecule::frozenAtom(Avogadro::Index) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:300:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  300 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtomAxis(Avogadro::Index, int, bool)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:312:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  312 |   if (m_frozenAtomMask.rows() != 3*m_atomicNumbers.size())
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:321:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  321 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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  162 | } // namespace Avogadro
      | ^
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  162 | } // namespace Avogadro
      | ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o -MF CMakeFiles/Calc.dir/chargemodel.cpp.o.d -o CMakeFiles/Calc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -MF CMakeFiles/Rendering.dir/arcsector.cpp.o.d -o CMakeFiles/Rendering.dir/arcsector.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:28:33:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.204142].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp: In member function ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:28:33: note: ‘<anonymous>’ declared here
   28 |   Array<Vector3f> verts(numVerts);
      |                                 ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o -MF CMakeFiles/Calc.dir/chargemanager.cpp.o.d -o CMakeFiles/Calc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o -MF CMakeFiles/Calc.dir/defaultmodel.cpp.o.d -o CMakeFiles/Calc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:23:39:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.205549].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp: In member function ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:23:39: note: ‘<anonymous>’ declared here
   23 |   Core::Array<Vector3f> verts(numVerts);
      |                                       ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -MF CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o CMakeFiles/Calc.dir/energycalculator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -MF CMakeFiles/Calc.dir/energymanager.cpp.o.d -o CMakeFiles/Calc.dir/energymanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energymanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o -MF CMakeFiles/Rendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o CMakeFiles/Calc.dir/lennardjones.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h: In constructor ‘Avogadro::Calc::LennardJones::LennardJones()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:56:7: warning: ‘Avogadro::Calc::LennardJones::m_exponent’ will be initialized after [-Wreorder]
   56 |   int m_exponent;
      |       ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52:19: warning:   ‘Avogadro::Core::UnitCell* Avogadro::Calc::LennardJones::m_cell’ [-Wreorder]
   52 |   Core::UnitCell* m_cell;
      |                   ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:14:1: warning:   when initialized here [-Wreorder]
   14 | LennardJones::LennardJones()
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Calc::LennardJones::m_cell’ will be initialized after [-Wreorder]
   52 |   Core::UnitCell* m_cell;
      |                   ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:51:19: warning:   ‘Avogadro::Core::Molecule* Avogadro::Calc::LennardJones::m_molecule’ [-Wreorder]
   51 |   Core::Molecule* m_molecule;
      |                   ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:14:1: warning:   when initialized here [-Wreorder]
   14 | LennardJones::LennardJones()
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::setMolecule(Avogadro::Core::Molecule*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:46:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   46 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:55:29: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   55 |     for (Index j = i + 1; j < numAtoms; ++j) {
      |                           ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual Avogadro::Real Avogadro::Calc::LennardJones::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   84 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:86:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   86 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:100:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  100 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:128:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  128 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:130:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  130 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:154:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  154 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:156:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  156 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.cpp
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[ 14%] Linking CXX shared library ../../lib/libAvogadroCalc.so
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/Calc.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.98.1 CMakeFiles/Calc.dir/chargemodel.cpp.o CMakeFiles/Calc.dir/chargemanager.cpp.o CMakeFiles/Calc.dir/defaultmodel.cpp.o CMakeFiles/Calc.dir/energycalculator.cpp.o CMakeFiles/Calc.dir/energymanager.cpp.o CMakeFiles/Calc.dir/lennardjones.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/libAvogadroCore.so.1.98.1 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.98.1 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 14%] Built target Calc
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8,
    inlined from ‘std::__new_allocator<Avogmake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
adro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF CMakeFiles/Rendering.dir/camera.cpp.o.d -o CMakeFiles/Rendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o -MF CMakeFiles/IO.dir/cjsonformat.cpp.o.d -o CMakeFiles/IO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cjsonformat.cpp
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[ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.cpp
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[ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:6:
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:63:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here
   59 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:63:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here
   59 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:69:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here
   65 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:69:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here
   65 |     ColorNormalVertex vert2;
      |                       ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:253,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:12:
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 4]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 8]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
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In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:6:
In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::MeshGeometry::PackedVertex, std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Core::Array<Avogadro::Rendering::MeshGeometry::PackedVertex>::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:250:22,
    inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:241:25:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.273385].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   25 |   struct PackedVertex
      |          ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:241:71: note: ‘<anonymous>’ declared here
  241 |     m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++)));
      |                                                                       ^
In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::MeshGeometry::PackedVertex, std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Core::Array<Avogadro::Rendering::MeshGeometry::PackedVertex>::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:250:22,
    inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:263:25:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.273408].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   25 |   struct PackedVertex
      |          ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:263:71: note: ‘<anonymous>’ declared here
  263 |     m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++)));
      |                                                                       ^
In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::construct<Avogadro::Rendering::MeshGeometry::PackedVertex, Avogadro::Rendering::MeshGeometry::PackedVertex const&>(std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex>&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::Rendering::MeshGeometry::PackedVertex, std::allocator<Avogadro::Rendering::MeshGeometry::PackedVertex> >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::Core::Array<Avogadro::Rendering::MeshGeometry::PackedVertex>::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:250:22,
    inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<unsigned char, 4, 1, 0, 4, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:217:25:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.268646].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   25 |   struct PackedVertex
      |          ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&, Avogadro::Core::Array<Eigen::Matrix<unsigned char, 4, 1, 0, 4, 1> > const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.cpp:217:73: note: ‘<anonymous>’ declared here
  217 |     m_vertices.push_back(PackedVertex(*(cIter++), *(nIter++), *(vIter++)));
      |                                                        make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
                 ^
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 17%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o -MF CMakeFiles/IO.dir/mdlformat.cpp.o.d -o CMakeFiles/IO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mdlformat.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o -MF CMakeFiles/IO.dir/gromacsformat.cpp.o.d -o CMakeFiles/IO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/gromacsformat.cpp
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[ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.cpp
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[ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF CMakeFiles/Rendering.dir/quad.cpp.o.d -o CMakeFiles/Rendering.dir/quad.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:20:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.206580].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp: In member function ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:20:26: note: ‘<anonymous>’ declared here
   20 |   Array<Vector3f> verts(4);
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:16:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.205258].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp: In member function ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:16:26: note: ‘<anonymous>’ declared here
   16 |   Array<Vector3f> verts(5);
      |                          ^
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsTrajectoryFormat::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp:268:5: warning: ‘numAtoms2’ may be used uninitialized [-Wmaybe-uninitialized]
  268 |     if (numAtoms2 != numAtoms) {
      |     ^~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp:231:10: note: ‘numAtoms2’ was declared here
  231 |   size_t numAtoms2;
      |          ^~~~~~~~~
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/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -o ../../bin/avocjsontocml  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 24%] Built target avocjsontocml
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 24%] Linking CXX executable ../../bin/avobabel
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 24%] Built target avobabel
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o -MF CMakeFiles/QuantumIO.dir/gamessus.cpp.o.d -o CMakeFiles/QuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 24%] Automatic MOC for target QtGui
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h"
AutoGen: Parsing "SRC:/build/avogadro/qtgui/avogadroqtguiexport.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp"
/usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 25%] Built target QtGui_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 26%] Generating ui_customelementdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 26%] Generating qrc_qtgui.cpp
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/qtgui.qrc
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp: In member function ‘void Avogadro::QuantumIO::GaussianFchk::processLine(std::istream&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:194:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  194 |     for (unsigned int i = 0; i < m_normalModes; ++i) {
      |                              ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:211:23: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  211 |     if (tmpVec.size() == m_numAtoms * 3 * m_normalModes) {
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:212:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  212 |       for (unsigned int i = 0; i < m_normalModes; ++i) {
      |                                ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:214:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  214 |         for (unsigned int j = 0; j < m_numAtoms; ++j) {
      |                                  ~~^~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/QtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp
In file included from /usr/include/eigen3/Eigen/Core:257,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:13,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:8:
In member function ‘Eigen::internal::mul_assign_op<double, double>::assignCoeff(double&, double const&) const’,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16,
    inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35,
    inlined from ‘Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92,
    inlined from ‘Eigen::internal::call_dense_assignment_loop<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from ‘Eigen::internal::Assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘Eigen::internal::call_assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&, Eigen::internal::enable_if<!Eigen::internal::evaluator_assume_aliasing<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator_traits<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27,
    inlined from ‘Eigen::DenseBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28,
    inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:138:21:
/usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM <double> [(struct DenseStorage *)&position + 16B]’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; }
      |                                                                                                    ~~^~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM <double> [(struct DenseStorage *)&position + 16B]’ was declared here
  133 |       Vector3 position;
      |               ^~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -MF CMakeFiles/QuantumIO.dir/orca.cpp.o.d -o CMakeFiles/QuantumIO.dir/orca.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp: In member function ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:651:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  651 |           while (idx < orcaOrbitals.size()) {
      |                  ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:654:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |                 if (idx + 1 >= columns[i].size())
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:660:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  660 |                 if (idx + 1 >= columns[i].size())
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:730:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  730 |             while (idx < orcaOrbitals.size()) {
      |                    ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:733:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  733 |                   if (idx + 1 >= columns[i].size())
      |                       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:739:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  739 |                   if (idx + 1 >= columns[i].size())
      |                       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:118:9: warning: variable ‘vibScaling’ set but not used [-Wunused-but-set-variable]
  118 |   float vibScaling = 1.0f;
      |         ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:398:39: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
  398 |           m_vibDisplacements[i].resize(m_atomNums.size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:174:8: note: by argument 3 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned long const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  174 |   void resize(const size_t& sz, const ValueType& t = ValueType())
      |        ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:398:39: note: ‘<anonymous>’ declared here
  398 |           m_vibDisplacements[i].resize(m_atomNums.size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:400:44: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
  400 |             m_vibDisplacements[i].push_back(Eigen::Vector3d());
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:247:8: note: by argument 2 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::push_back(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  247 |   void push_back(const ValueType& v)
      |        ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:400:61: note: ‘<anonymous>’ declared here
  400 |             m_vibDisplacements[i].push_back(Eigen::Vector3d());
      |                                                             ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/QtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/QtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target QTAIMScenePlugin
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimengine.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QTAIMScenePlugin_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target ThreeDMol
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmol.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmoldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ThreeDMol_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target ApplyColors
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors/applycolors.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ApplyColors_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Bonding
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding/bonding.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/BondingPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Bonding_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Cartoons
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons/cartoons.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Cartoons_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target QtOpenGL
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h"
AutoGen: Parsing "SRC:/build/avogadro/qtopengl/avogadroqtopenglexport.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp"
AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target QtOpenGL_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Centroid
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/centroid/centroid.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid/centroid.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Centroid_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CopyPaste
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste/copypaste.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target MoleQueue
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h"
AutoGen: Parsing "SRC:/build/avogadro/molequeue/avogadromolequeueexport.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h"
/usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CopyPaste_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target MoleQueue_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CustomElements
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements/customelements.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CustomElements_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target FetchPDB
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb/fetchpdb.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target FetchPDB_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Hydrogens
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens/hydrogens.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Hydrogens_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Crystal
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystal.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/importcrystaldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/supercelldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/unitcelldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/volumescalingdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Crystal_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CrystalScene
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CrystalScene_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target ImportPQR
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/importpqr.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrrequest.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ImportPQR_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target NucleicInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna/insertdna.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target NucleicInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target NetworkDatabases
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases/networkdatabases.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target LineFormatInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target NetworkDatabases_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target LineFormatInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Forcefield
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefield.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefielddialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target Forcefield_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target PLY
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ply/ply.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply/ply.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLYPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target PLY_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target POVRay
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRayPlugin.cpp
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray/povray.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target POVRay_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Label
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/label.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target Label_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target SpaceGroup
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup/spacegroup.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target SpaceGroup_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target LammpsInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target LammpsInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target OpenBabel
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obforcefielddialog.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obprocess.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/openbabel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obfileformat.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target OpenMMInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target OpenBabel_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target OpenMMInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target PropertyTables
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertymodel.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertytables.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target PropertyTables_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target Select
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/SelectPlugin.cpp
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select/select.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target Select_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target MolecularProperties
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularproperties.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target MolecularProperties_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target CoordinateEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditor.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target CoordinateEditor_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target InsertFragment
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragmentdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target InsertFragment_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target VRML
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml/vrml.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target VRML_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target commands
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts/command.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target commands_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target Spectra
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationdialog.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/spectra.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target Spectra_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target ScriptCharges
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptcharges.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target ScriptCharges_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target ScriptFileFormats
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats/scriptfileformats.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target ScriptFileFormats_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target BallStick
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick/ballandstick.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target BallStick_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target PluginDownloader
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/downloaderwidget.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/plugindownloader.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target PluginDownloader_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Force
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force/force.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/ForcePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target Force_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Licorice
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice/licorice.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target Licorice_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target VanDerWaals
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals/vanderwaals.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target VanDerWaals_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target CloseContacts
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts/closecontacts.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target CloseContacts_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Wireframe
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe/wireframe.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target Wireframe_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Automatic MOC for target QTAIMExtension
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimextension.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target QTAIMExtension_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Generating ui_molequeuewidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Generating ui_inputgeneratordialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Generating ui_inputgeneratorwidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Generating ui_molequeuedialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Meshes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Built target Meshes_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target NonCovalent
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent/noncovalent.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Built target NonCovalent_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Generating ui_3dmoldialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmoldialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmoldialog.cpp
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[ 42%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp
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[ 42%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors/applycolors.cpp
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[ 42%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding/bonding.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/qttextrenderstrategy.cpp
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[ 43%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color="
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[ 43%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtOpenGL.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.98.1 CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/libAvogadroRendering.so.1.98.1 ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.98.1 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/BondingPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o -MF CMakeFiles/Centroid.dir/centroid.cpp.o.d -o CMakeFiles/Centroid.dir/centroid.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid/centroid.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -MF CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o.d -o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/volumescalingdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/importcrystaldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/supercelldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/unitcelldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste/copypaste.cpp
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[ 45%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a
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[ 46%] Built target CopyPaste
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons/cartoons.cpp
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[ 46%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 46%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp
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[ 46%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a
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[ 46%] Built target Cartoons
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/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp
In file included from /usr/include/c++/14/vector:66,
                 from /usr/include/c++/14/functional:64,
                 from /usr/include/eigen3/Eigen/Core:85,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:6:
In member function ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::resize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::resize(unsigned long const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:79:17:
/usr/include/c++/14/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/vector:72:
/usr/include/c++/14/bits/vector.tcc: In member function ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’:
/usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > > >, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ declared here
  700 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: note: ‘<anonymous>’ declared here
   79 |     strip.resize(2);
      |     ~~~~~~~~~~~~^~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/MoleQueue.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.98.1 CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/MoleQueue.dir/batchjob.cpp.o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/MoleQueue.dir/client/client.cpp.o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Network.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.98.1 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target MoleQueue
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Automatic MOC for target Editor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editortoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/EditorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target Editor_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Generating ui_forcefielddialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefielddialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Automatic MOC for target Focus
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus/focus.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/FocusPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt"
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp
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[ 49%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements/customelements.cpp
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[ 49%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb/fetchpdb.cpp
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[ 50%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp
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[ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o
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[ 52%] Generating ui_pqrwidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrwidget.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color="
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[ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna/insertdnadialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color="
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[ 50%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens/hydrogens.cpp
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[ 52%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 52%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 52%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a
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[ 53%] Built target Hydrogens
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/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color="
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[ 53%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::optimize()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  215 |     for (Index i = 0; i < 3 * n; ++i) {
      |                       ~~^~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:267:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  267 |       for (size_t i = 0; i < n; ++i) {
      |                          ~~^~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:265:12: warning: variable ‘isFinite’ set but not used [-Wunused-but-set-variable]
  265 |       bool isFinite = true;
      |            ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::freezeSelected()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:367:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::unfreezeSelected()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:381:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  381 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:22:
/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/avogadropython.h: At global scope:
/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable]
    2 | static const char *pythonInterpreterPath = "/usr/bin/python3";
      |                    ^~~~~~~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 54%] Built target NucleicInput
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/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color="
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[ 53%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::ProcessListener::ProcessListener(QProcess*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:61:8: warning: ‘Avogadro::QtPlugins::OBMMEnergy::ProcessListener::m_finished’ will be initialized after [-Wreorder]
   61 |   bool m_finished;
      |        ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:60:13: warning:   ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::ProcessListener::m_process’ [-Wreorder]
   60 |   QProcess* m_process;
      |             ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:23:3: warning:   when initialized here [-Wreorder]
   23 |   ProcessListener(QProcess* proc)
      |   ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::OBMMEnergy(const std::string&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h:86:15: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_name’ will be initialized after [-Wreorder]
   86 |   std::string m_name;
      |               ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h:81:13: warning:   ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::m_process’ [-Wreorder]
   81 |   QProcess* m_process;
      |             ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:65:1: warning:   when initialized here [-Wreorder]
   65 | OBMMEnergy::OBMMEnergy(const std::string& method)
      | ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::OBMMEnergy::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:261:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  261 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBMMEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:317:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  317 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 54%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelPlugin.cpp
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[ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a
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[ 54%] Built target Label
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/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend
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[ 54%] Automatic MOC for target LabelEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
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/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp"
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/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/labeleditor.h
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/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Generating ui_lineformatinputdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Automatic MOC for target Manipulator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Built target Manipulator_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Automatic MOC for target MeasureTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Built target MeasureTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrrequest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Automatic MOC for target Navigator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator/navigator.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Built target Navigator_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 57%] Built target ImportPQR
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Generating ui_obforcefielddialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obforcefielddialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 54%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h: In constructor ‘Avogadro::QtPlugins::ScriptEnergy::ScriptEnergy(const QString&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h:91:8: warning: ‘Avogadro::QtPlugins::ScriptEnergy::m_valid’ will be initialized after [-Wreorder]
   91 |   bool m_valid;
      |        ^~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h:86:10: warning:   ‘Avogadro::QtPlugins::ScriptEnergy::Format Avogadro::QtPlugins::ScriptEnergy::m_inputFormat’ [-Wreorder]
   86 |   Format m_inputFormat;
      |          ^~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:29:1: warning:   when initialized here [-Wreorder]
   29 | ScriptEnergy::ScriptEnergy(const QString& scriptFileName_)
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::ScriptEnergy::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:116:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  116 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::ScriptEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  149 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 58%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -MF CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o.d -o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -P CMakeFiles/Forcefield.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_link_script CMakeFiles/Forcefield.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Forcefield.a CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o CMakeFiles/Forcefield.dir/forcefield.cpp.o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Forcefield.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color="
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[ 57%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 58%] Automatic MOC for target PlayerTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
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/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool/playertool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d"
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases/networkdatabases.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder]
   65 |   std::string m_identifier;
      |               ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning:   base ‘Avogadro::Calc::ChargeModel’ [-Wreorder]
   65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel()
      |                                                                             ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning:   when initialized here [-Wreorder]
   65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel()
      | ^~~~~~~~~
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[ 61%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRayPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target POVRay
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Automatic MOC for target ResetView
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview/resetview.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target ResetView_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Automatic MOC for target Selection
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Built target Selection_autogen
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/openbabel.cpp
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[ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 62%] Built target OpenBabel
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/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 62%] Automatic MOC for target Surfaces
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/slatersetconcurrent.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfacedialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Built target Surfaces_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Generating ui_lammpsinputdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select/select.cpp
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[ 62%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup/spacegroup.cpp
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[ 62%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertytables.cpp
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[ 64%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminputdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color="
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[ 64%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/SelectPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o
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[ 64%] Built target Select
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui
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[ 64%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 64%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertymodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp
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[ 65%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘void Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:413:15: warning: unused variable ‘index’ [-Wunused-variable]
  413 |           int index = tokenCursor.selectedText().toInt(&isInt);
      |               ^~~~~
In member function ‘__ct ’,
    inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13,
    inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13,
    inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:509:28:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized]
   93 | struct AtomStruct
      |        ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here
  341 |     AtomStruct atom;
      |                ^~~~
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[ 65%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h:35:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder]
   35 |   QtGui::Molecule* m_molecule;
      |                    ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h:34:16: warning:   ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder]
   34 |   PropertyType m_type;
      |                ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:25:1: warning:   when initialized here [-Wreorder]
   25 | PropertyView::PropertyView(PropertyType type, QWidget* parent)
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |       if (rowNum >= m_molecule->atomCount())
      |           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:105:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare]
  105 |       if (rowNum >= m_molecule->bondCount())
      |           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
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/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a
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make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target OpenMMInput
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 67%] Built target PropertyTables
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 67%] Generating ui_molecularpropertiesdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target CoordinateEditor
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:50:25: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder]
   50 |   InsertFragmentDialog* m_crystalDialog;
      |                         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:49:25: warning:   ‘Avogadro::QtPlugins::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder]
   49 |   InsertFragmentDialog* m_moleculeDialog;
      |                         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | InsertFragment::InsertFragment(QObject* parent_)
      | ^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder]
   55 |   Io::FileFormat* m_reader;
      |                   ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning:   ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder]
   54 |   QtGui::Molecule* m_molecule;
      |                    ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | InsertFragment::InsertFragment(QObject* parent_)
      | ^~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 68%] Automatic MOC for target SVG
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVGPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt"
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[ 68%] Built target SVG_autogen
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[ 68%] Generating ui_vibrationdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 68%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularproperties.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 69%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 69%] Built target InsertFragment
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Automatic MOC for target TemplateTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp.d"
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[ 70%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target MolecularProperties
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -MF CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target Cp2kInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinput.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target Cp2kInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target GamessInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamesshighlighter.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinput.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Built target GamessInput_autogen
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/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF CMakeFiles/Spectra.dir/spectra.cpp.o.d -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/spectra.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Built target Spectra
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a
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[ 70%] Built target VRML
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/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target apbs
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbs.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsoutputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target apbs_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target QuantumInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput/quantuminput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target QuantumInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder]
   86 |   bool m_electrostatics;
      |        ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning:   ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder]
   82 |   Format m_inputFormat;
      |          ^~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_)
      | ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   95 |   for (unsigned int i = 0; i < lines.size(); ++i) {
      |                            ~~^~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/plugindownloader.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick/ballandstick.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function ‘QList<QString> Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable ‘itrCount’ [-Wunused-variable]
  110 |   long itrCount = 0;
      |        ^~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts/closecontacts.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp
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[ 76%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a
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make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Built target Licorice
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp
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[ 76%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp
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[ 76%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 76%] Built target PluginDownloader
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 76%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/ForcePlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a
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[ 77%] Built target Force
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/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 76%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:88:51:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.389947].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:88:51: note: ‘<anonymous>’ declared here
   88 |     Core::Array<Vector3ub> colorsRGB(colors.size());
      |                                                   ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target VanDerWaals
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Automatic MOC for target OverlayAxes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target OverlayAxes_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target Meshes
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Automatic MOC for target AlignTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/aligntool/aligntool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target AlignTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Generating ui_editortoolwidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editortoolwidget.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Generating qrc_editor.cpp
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.qrc
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Automatic MOC for target BondCentric
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool/bondcentrictool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp"
/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target BondCentric_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe/wireframe.cpp
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[ 81%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimextension.cpp
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[ 81%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1
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[ 81%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus/focus.cpp
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[ 82%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp
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[ 82%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/FocusPlugin.cpp
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[ 81%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp
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[ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulatewidget.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.cpp
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[ 84%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp
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[ 84%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editortoolwidget.cpp
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[ 85%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/qrc_editor.cpp
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[ 82%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/labeleditor.cpp
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[ 85%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/qrc_label.cpp
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[ 85%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/EditorPlugin.cpp
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[ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a
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[ 86%] Built target Editor
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.qrc
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[ 86%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/lib64/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator/navigator.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp
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[ 88%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp
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[ 83%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp
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[ 84%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp
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[ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  267 |   yp[2] = gradient(2) / normGradient;
      |           ~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here
  196 |   Matrix<qreal, 3, 1> gradient;
      |                       ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized]
  151 |     flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr,
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  152 |                                         flag);
      |                                         ~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here
   53 |   qreal abserr;
      |         ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized]
   56 |   qint64 n_step;
      |          ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized]
  145 |       ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) /
      |                                                 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here
   61 |   qreal t_stop;
      |         ^~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/qrc_navigator.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp
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[ 88%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:11:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1,
    inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:157:55:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.476206].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:157:54: note: ‘<anonymous>’ declared here
  157 |   QVector<Vector3> positions(m_atoms.size(), Vector3());
      |                                                      ^
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[ 89%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp
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[ 89%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1
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[ 89%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'.
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.qrc
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[ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp
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[ 90%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp
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[ 90%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool/playertool.cpp
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[ 90%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1
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[ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp
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[ 90%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.h:13,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:203:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.481230].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:203:26: note: ‘<anonymous>’ declared here
  203 |   Array<Vector3f> verts(4);
      |                          ^
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[ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::SelectionToolWidget::setDropDown(size_t, size_t)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp:36:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   36 |   if (current != m_ui->changeLayerDropDown->currentIndex())
      |       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp
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[ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a
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[ 92%] Built target Selection
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp
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[ 92%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfacedialog.cpp
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[ 92%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp
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[ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  242 |   ydot[3] = gradient(2) / normGradient;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here
  171 |   Matrix<qreal, 3, 1> gradient;
      |                       ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 93%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h:47:10,
    inlined from ‘std::__new_allocator<Avogadro::QtPlugins::SVG::SVGAtom>::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(std::allocator<Avogadro::QtPlugins::SVG::SVGAtom>&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::QtPlugins::SVG::SVGAtom, std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30,
    inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:154:22:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here
  152 |     SVGAtom atom(atomPositions[i].cast<float>(), pos, i,
      |             ^~~~
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h:47:10,
    inlined from ‘std::__new_allocator<Avogadro::QtPlugins::SVG::SVGAtom>::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(std::allocator<Avogadro::QtPlugins::SVG::SVGAtom>&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17,
    inlined from ‘std::vector<Avogadro::QtPlugins::SVG::SVGAtom, std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::_M_realloc_append<Avogadro::QtPlugins::SVG::SVGAtom const&>(Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/vector.tcc:634:26,
    inlined from ‘std::vector<Avogadro::QtPlugins::SVG::SVGAtom, std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/14/bits/stl_vector.h:1291:21,
    inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:154:22:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here
  152 |     SVGAtom atom(atomPositions[i].cast<float>(), pos, i,
      |             ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemanager.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:19:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:776:51:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.512325].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:776:51: note: ‘<anonymous>’ declared here
  776 |   Core::Array<Vector3> positions(positionsf.size());
      |                                                   ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimcubature.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/lib64/qt5/bin/rcc --name template --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/qrc_template.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/template.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color="
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[ 93%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVGPlugin.cpp
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[ 93%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui
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[ 93%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color="
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[ 94%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 94%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinput.cpp
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[ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsoutputdialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/opendxreader.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbsPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetool.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetool.cpp
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[ 97%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:14,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.466386].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘<anonymous>’ declared here
  145 |   Array<Vector3f> vertices(numVertices);
      |                                       ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.466388].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘<anonymous>’ declared here
  146 |   Array<Vector3f> normals(numVertices);
      |                                      ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a
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[ 98%] Built target OverlayAxes
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetoolwidget.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/qrc_template.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp
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[ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 97%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h: In constructor ‘Avogadro::QtPlugins::AlignTool::AlignTool(QObject*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:87:20: warning: ‘Avogadro::QtPlugins::AlignTool::m_toolWidget’ will be initialized after [-Wreorder]
   87 |   mutable QWidget* m_toolWidget;
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:81:26: warning:   ‘Avogadro::Rendering::GLRenderer* Avogadro::QtPlugins::AlignTool::m_renderer’ [-Wreorder]
   81 |   Rendering::GLRenderer* m_renderer;
      |                          ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning:   when initialized here [-Wreorder]
   48 | AlignTool::AlignTool(QObject* parent_)
      | ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:85:7: warning: ‘Avogadro::QtPlugins::AlignTool::m_alignType’ will be initialized after [-Wreorder]
   85 |   int m_alignType;
      |       ^~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:84:7: warning:   ‘int Avogadro::QtPlugins::AlignTool::m_axis’ [-Wreorder]
   84 |   int m_axis;
      |       ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning:   when initialized here [-Wreorder]
   48 | AlignTool::AlignTool(QObject* parent_)
      | ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘void Avogadro::QtPlugins::AlignTool::alignAtomToAxis(Avogadro::Index, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:159:11: warning: variable ‘align’ set but not used [-Wunused-but-set-variable]
  159 |   Vector3 align = m_molecule->atom(atomIndex).position3d();
      |           ^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:163:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable]
  163 |   double alpha, beta, gamma;
      |          ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:14,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:11:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:148:47:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.480409].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:148:47: note: ‘<anonymous>’ declared here
  148 |   Core::Array<Vector3> newCoords(coords.size());
      |                                               ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1,
    inlined from ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:272:55:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.482098].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:272:54: note: ‘<anonymous>’ declared here
  272 |   QVector<Vector3> positions(m_atoms.size(), Vector3());
      |                                                      ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/14/bits/stl_vector.h:1706:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/14/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned long, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:161:47:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.480434].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:161:47: note: ‘<anonymous>’ declared here
  161 |   Core::Array<Vector3> newCoords(coords.size());
      |                                               ^
In file included from /usr/include/eigen3/Eigen/Geometry:36,
                 from /usr/include/eigen3/Eigen/Dense:6:
In member function ‘Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross<Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&) constEigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross_product_return_type<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::type’,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:181:32:
/usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:31: warning: ‘MEM[(const Scalar &)&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized]
   47 |     numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0))
      |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: note: ‘axisVector’ declared here
  168 |   Vector3 axisVector;
      |           ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: warning: ‘MEM <double> [(struct DenseStorage *)&axisVector + 16B]’ may be used uninitialized [-Wmaybe-uninitialized]
In member function ‘Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross<Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&) constEigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross_product_return_type<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::type’,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:181:32:
/usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:61: warning: ‘MEM[(const Scalar &)&axisVector + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
   47 |     numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0))
      |                                                ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: note: ‘axisVector’ declared here
  168 |   Vector3 axisVector;
      |           ^~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:346,
                 from /usr/include/eigen3/Eigen/Core:22:
In function ‘_mm_loadu_pd’,
    inlined from ‘Eigen::internal::ploadu<double __vector(2)>(Eigen::internal::unpacket_traits<double __vector(2)>::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:746:22,
    inlined from ‘Eigen::internal::ploadt<double __vector(2), 0>(Eigen::internal::unpacket_traits<double __vector(2)>::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26,
    inlined from ‘Eigen::internal::evaluator<Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:782:80,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::packetByOuterInner<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54,
    inlined from ‘Eigen::internal::redux_vec_unroller<Eigen::internal::scalar_sum_op<double, double>, Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >, 0, 1>::run<double __vector(2)>(Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> > const&, Eigen::internal::scalar_sum_op<double, double> const&)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<double, double>, Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >, 3, 2>::run<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> > const&, Eigen::internal::scalar_sum_op<double, double> const&, Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::redux<Eigen::internal::scalar_sum_op<double, double> >(Eigen::internal::scalar_sum_op<double, double> const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::internal::dot_nocheck<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1>, false>::run(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51,
    inlined from ‘Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::dot<Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&) constEigen::ScalarBinaryOpTraits<double, Eigen::internal::traits<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Scalar, Eigen::internal::scalar_product_op<double, Eigen::internal::traits<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:178:22:
/usr/lib/gcc/x86_64-redhat-linux/14/include/emmintrin.h:134:24: warning: ‘MEM[(__m128d_u * {ref-all})&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized]
  134 |   return *(__m128d_u *)__P;
      |                        ^~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: note: ‘axisVector’ declared here
  168 |   Vector3 axisVector;
      |           ^~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/AlignTool.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -P CMakeFiles/AlignTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTool.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/AlignTool.a CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o CMakeFiles/AlignTool.dir/aligntool.cpp.o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/AlignTool.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Built target AlignTool
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/TemplateTool.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -P CMakeFiles/TemplateTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_link_script CMakeFiles/TemplateTool.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/TemplateTool.a CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o CMakeFiles/TemplateTool.dir/templatetool.cpp.o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/TemplateTool.a
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[ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp
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[ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color="
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[ 99%] Automatic MOC for target QtPlugins
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json Release
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/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadroqtpluginsexport.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h"
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/usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/pluginmanager.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d"
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AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenUsed.txt"
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[ 99%] Built target QtPlugins_autogen
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color="
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[100%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[100%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/pluginmanager.cpp
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[100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtPlugins.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.98.1 CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/AlignTool.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/Centroid.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Forcefield.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PLY.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/Spectra.a ../../lib/avogadro2/staticplugins/TemplateTool.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroCalc.so.1.98.1 ../../thirdparty/libgwavi/libgwavi.a /usr/lib64/libQt5Svg.so.5.15.12 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 ../../lib/libAvogadroMoleQueue.so.1.98.1 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Network.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 ../../lib/libAvogadroQuantumIO.so.1.98.1 /usr/lib64/libQt5Network.so.5.15.12 /usr/lib64/libarchive.so ../../lib/libAvogadroQtOpenGL.so.1.98.1 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 /usr/lib64/libGLX.so /usr/lib64/libOpenGL.so /usr/lib64/libGLEW.so /usr/lib64/libQt5Concurrent.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroIO.so.1.98.1 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 ../../lib/libAvogadroRendering.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.98.1 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr]
   61 | enum BasisOption
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59: note: an enum with different value name is defined in another translation unit
   59 | enum BasisOption
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit
   63 |   BasisSZVGTH = 0,
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61: note: mismatching definition
   61 |   BasisSTO3G = 0,
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr]
   40 | enum CalculateOption
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37: note: an enum with different value name is defined in another translation unit
   37 | enum CalculateOption
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit
   42 |   CalculateEnergy = 0,
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39: note: mismatching definition
   39 |   CalculateSinglePoint = 0,
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[100%] Built target QtPlugins
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make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
+ pushd build/docs
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+ doxygen
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Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mdlvalence_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mdlvalence_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h...
Preprocessing /builddir/build/BUILD/avogadro/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:90: warning: unbalanced grouping commands
libs-1.98.1/avogadro/core/mutex.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mutex.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/nameatomtyper.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/nameatomtyper.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/sharedmutex.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/sharedmutex.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slatersettools.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slatersettools.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroups.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroups.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/symbolatomtyper.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/symbolatomtyper.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/utilities.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/utilities.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cjsonformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cjsonformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cmlformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cmlformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/dcdformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/dcdformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/gromacsformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/gromacsformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mdlformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mdlformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mmtfformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mmtfformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/pdbformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/pdbformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/trrformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/trrformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/turbomoleformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/turbomoleformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/vaspformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/vaspformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/xyzformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/xyzformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jobobject.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jobobject.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h...
Parsing file /builddir/build/BUI/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands
LD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/utilities.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/utilities.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/viewfactory.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/viewfactory.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/qttextrenderstrategy.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/qttextrenderstrategy.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrogl.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrogl.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrorendering.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrorendering.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avog/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands
adro/rendering/glrendervisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel2d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel2d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel3d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel3d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textrenderstrategy.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textrenderstrategy.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h...
Preprocessing /builddir/build/BUILD/avogadroli/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomutilities.h:22: warning: Compound Avogadro::Core::AtomUtilities is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:24: warning: Compound Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:217: warning: no matching class member found for 
  template < Molecule_T >
  BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const
Possible candidates:
  'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h
  'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented.
bs-1.98.1/avogadro/rendering/volumegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/volumegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/docs/mainpage.dox...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/docs/mainpage.dox...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Distributing member group documentation.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating file documentation...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound vtkAvogadroActor...
Generating concept documentation...
Generating module documentation...
Generating namespace documentation...
Generating docs for compound Avogadro::Frustrum...
Generating docs for compound Avogadro::TypeTraits...
Generating docs for compound Avogadro::TypeTraits< char >...
Generating docs for compound Avogadro::TypeTraits< double >...
Generating docs for compound Avogadro::TypeTraits< float >...
Generating docs for compound Avogadro::TypeTraits< int >...
Generating docs for compound Avogadro::TypeTraits< short >...
Generating docs for compound Avogadro::TypeTraits/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented:
  parameter 'points'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:801: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:808: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented:
  parameter 'molecule'
  parameter 'newVolume'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented:
  parameter 'molecule'
  parameter 'newCellColMatrix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented:
  parameter 'value'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:213: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:214: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:274: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:275: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:276: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:309: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:407: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:408: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:410: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:412: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:420: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:421: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:423: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:425: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:432: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:487: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:508: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:509: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:510: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:511: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:512: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:513: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:514: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:515: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:536: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:544: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:545: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:546: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:547: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:553: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:584: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:585: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:586: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:588: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:589: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:714: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:721: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:722: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:726: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:728: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:732: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:734: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:736: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:738: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:739: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:724: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:752: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:755: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:758: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:759: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:760: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:762: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:763: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:764: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:765: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:766: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:768: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:769: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:770: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:771: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:774: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:776: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:777: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:779: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:780: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:781: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:784: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:62: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:73: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:84: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:95: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:106: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:117: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:128: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:139: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:150: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:156: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:167: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:184: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:195: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:206: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:217: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:234: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:247: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:262: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:277: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:286: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:304: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:313: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
< unsigned char >...
Generating docs for compound Avogadro::TypeTraits< unsigned int >...
Generating docs for compound Avogadro::TypeTraits< unsigned short >...
Generating docs for compound Avogadro::Calc::ChargeManager...
Generating docs for compound Avogadro::Calc::ChargeModel...
Generating docs for compound Avogadro::Calc::DefaultModel...
Generating docs for compound Avogadro::Calc::EnergyCalculator...
Generating docs for compound Avogadro::Calc::EnergyManager...
Generating docs for compound Avogadro::Calc::LennardJones...
Generating docs for namespace Avogadro::Core
Generating docs for compound Avogadro::Core::AngleIterator...
Generating docs for compound Avogadro::Core::Array...
Generating docs for compound Avogadro::Core::ArraySet...
Generating docs for nested compound Avogadro::Core::ArraySet::Holder...
Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder...
Generating docs for compound Avogadro::Core::Atom...
Generating docs for compound Avogadro::Core::AtomTemplate...
Generating docs for compound Avogadro::Core::AtomTyper...
Generating docs for compound Avogadro::Core::AtomUtilities...
Generating docs for compound Avogadro::Core::AvoSpglib...
Generating docs for compound Avogadro::Core::BasisSet...
Generating docs for compound Avogadro::Core::Bond...
Generating docs for compound Avogadro::Core::BondTemplate...
Generating docs for compound Avogadro::Core::Color3f...
Generating docs for compound Avogadro::Core::CoordinateBlockGenerator...
Generating docs for compound Avogadro::Core::CoordinateSet...
Generating docs for compound Avogadro::Core::CrystalTools...
Generating docs for compound Avogadro::Core::Cube...
Generating docs for compound Avogadro::Core::DihedralIterator...
Generating docs for compound Avogadro::Core::Elements...
Generating docs for compound Avogadro::Core::GaussianSet...
Generating docs for compound Avogadro::Core::GaussianSetTools...
Generating docs for compound Avogadro::Core::Graph...
Generating docs for compound Avogadro::Core::hBondRecord...
Generating docs for compound Avogadro::Core::Layer...
Generating docs for compound Avogadro::Core::LayerData...
Generating docs for compound Avogadro::Core::LayerManager...
Generating docs for compound Avogadro::Core::Mesh...
Generating docs for compound Avogadro::Core::Molecule...
Generating docs for compound Avogadro::Core::MoleculeInfo...
Generating docs for compound Avogadro::Core::Mutex...
Generating docs for compound Avogadro::Core::NameAtomTyper...
Generating docs for compound Avogadro::Core::NeighborPerceiver...
Generating docs for compound Avogadro::Core::Residue...
Generating docs for compound Avogadro::Core::ResidueData...
Generating docs for compound Avogadro::Core::RingPerceiver...
Generating docs for compound Avogadro::Core::SecondaryStructureAssigner...
Generating docs for compound Avogadro::Core::SharedMutex...
Generating docs for compound Avogadro::Core::SlaterSet...
Generating docs for compound Avogadro::Core::SlaterSetTools...
Generating docs for compound Avogadro::Core::SpaceGroups...
Generating docs for compound Avogadro::Core::SymbolAtomTyper...
Generating docs for compound Avogadro::Core::UnitCell...
Generating docs for compound Avogadro::Core::Variant...
Generating docs for compound Avogadro::Core::VariantMap...
Generating docs for compound Avogadro::Core::internal::ArrayRefContainer...
Generating docs for compound Avogadro::Io::CaseInsensitiveComparator...
Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare...
Generating docs for compound Avogadro::Io::CjsonFormat...
Generating docs for compound Avogadro::Io::CmlFormat...
Generating docs for compound Avogadro::Io::DcdFormat...
Generating docs for compound Avogadro::Io::FileFormat...
Generating docs for compound Avogadro::Io::FileFormatManager...
Generating docs for compound Avogadro::Io::GromacsFormat...
Generating docs for compound Avogadro::Io::Hdf5DataFormat...
Generating docs for compound Avogadro::Io::LammpsDataFormat...
Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat...
Generating docs for com/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag <rpcMethod> found
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="")
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented:
  parameter 'title'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:48: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:45: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented:
  parameter 'atom'
  parameter 'numberOfHydrogens'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented:
  parameter 'reverse'
  parameter 'parent'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented:
  parameter 'reverse'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented:
  parameter 'val2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:96: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:133: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:155: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:228: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:230: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:231: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:233: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:235: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:236: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:213: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:214: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:274: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:275: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:276: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:309: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:407: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:408: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:410: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:412: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:420: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:421: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:423: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:425: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:432: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:487: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:508: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:509: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:510: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:511: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:512: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:513: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:514: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:515: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:536: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:544: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:545: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:546: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:547: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:553: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:584: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:585: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:586: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:588: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:589: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:714: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:721: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:722: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:726: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:728: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:732: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:734: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:736: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:738: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:739: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:724: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:752: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:755: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:758: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:759: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:760: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:762: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:763: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:764: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:765: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:766: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:768: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:769: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:770: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:771: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:774: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:776: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:777: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:779: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:780: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:781: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:784: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented:
  parameter 'atomId1'
  parameter 'atomId2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:226: warning: Member label(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:227: warning: Member setLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented:
  parameter 'atomId'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:140: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:169: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:170: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented.
pound Avogadro::Io::MdlFormat...
Generating docs for compound Avogadro::Io::MMTFFormat...
Generating docs for compound Avogadro::Io::OutcarFormat...
Generating docs for compound Avogadro::Io::PdbFormat...
Generating docs for compound Avogadro::Io::PoscarFormat...
Generating docs for compound Avogadro::Io::TrrFormat...
Generating docs for compound Avogadro::Io::TurbomoleFormat...
Generating docs for compound Avogadro::Io::XyzFormat...
Generating docs for compound Avogadro::MoleQueue::BatchJob...
Generating docs for compound Avogadro::MoleQueue::Client...
Generating docs for compound Avogadro::MoleQueue::InputGenerator...
Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog...
Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget...
Generating docs for compound Avogadro::MoleQueue::JobObject...
Generating docs for compound Avogadro::MoleQueue::JsonRpcClient...
Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog...
Generating docs for compound Avogadro::MoleQueue::MoleQueueManager...
Generating docs for compound Avogadro::MoleQueue::MoleQueueQueueListModel...
Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget...
Generating docs for compound Avogadro::QtGui::BackgroundFileFormat...
Generating docs for compound Avogadro::QtGui::ColorButton...
Generating docs for compound Avogadro::QtGui::ContainerWidget...
Generating docs for compound Avogadro::QtGui::CustomElementDialog...
Generating docs for compound Avogadro::QtGui::ElementDetail...
Generating docs for compound Avogadro::QtGui::ElementItem...
Generating docs for compound Avogadro::QtGui::ElementTranslator...
Generating docs for compound Avogadro::QtGui::ExtensionPlugin...
Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory...
Generating docs for compound Avogadro::QtGui::FileBrowseWidget...
Generating docs for compound Avogadro::QtGui::FileFormatDialog...
Generating docs for compound Avogadro::QtGui::GenericHighlighter...
Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule...
Generating docs for compound Avogadro::QtGui::HydrogenTools...
Generating docs for compound Avogadro::QtGui::InterfaceScript...
Generating docs for compound Avogadro::QtGui::InterfaceWidget...
Generating docs for compound Avogadro::QtGui::JsonWidget...
Generating docs for compound Avogadro::QtGui::LayerModel...
Generating docs for compound Avogadro::QtGui::MeshGenerator...
Generating docs for compound Avogadro::QtGui::Molecule...
Generating docs for compound Avogadro::QtGui::MoleculeModel...
Generating docs for compound Avogadro::QtGui::MoleculeSystem...
Generating docs for compound Avogadro::QtGui::MultiViewWidget...
Generating docs for compound Avogadro::QtGui::PeriodicTableScene...
Generating docs for compound Avogadro::QtGui::PeriodicTableView...
Generating docs for compound Avogadro::QtGui::PersistentAtom...
Generating docs for compound Avogadro::QtGui::PersistentBond...
Generating docs for compound Avogadro::QtGui::PluginLayerManager...
Generating docs for compound Avogadro::QtGui::PythonScript...
Generating docs for compound Avogadro::QtGui::RWAtom...
Generating docs for compound Avogadro::QtGui::RWBond...
Generating docs for compound Avogadro::QtGui::RWLayerManager...
Generating docs for compound Avogadro::QtGui::RWMolecule...
Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand...
Generating docs for compound Avogadro::QtGui::ScenePlugin...
Generating docs for compound Avogadro::QtGui::ScenePluginFactory...
Generating docs for compound Avogadro::QtGui::ScenePluginModel...
Generating docs for compound Avogadro::QtGui::ScriptLoader...
Generating docs for compound Avogadro::QtGui::ToolPlugin...
Generating docs for compound Avogadro::QtGui::ToolPluginFactory...
Generating docs for compound Avogadro::QtGui::ViewFactory...
Generating docs for compound Avogadro::QtOpenGL::ActiveObjects...
Generating docs for compound Avogadro::QtOpenGL::GLWidget...
Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy...
Generating docs for compound Avogadro::QuantumIO::G/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented:
  parameter 'ui'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:34: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:35: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
amessukOut...
Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput...
Generating docs for compound Avogadro::QuantumIO::GaussianCube...
Generating docs for compound Avogadro::QuantumIO::GaussianFchk...
Generating docs for compound Avogadro::QuantumIO::GenericOutput...
Generating docs for compound Avogadro::QuantumIO::GUKBasisSet...
Generating docs for compound Avogadro::QuantumIO::MoldenFile...
Generating docs for compound Avogadro::QuantumIO::MopacAux...
Generating docs for compound Avogadro::QuantumIO::NWChemJson...
Generating docs for compound Avogadro::QuantumIO::NWChemLog...
Generating docs for compound Avogadro::QuantumIO::ORCAOutput...
Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry...
Generating docs for compound Avogadro::Rendering::ArcSector...
Generating docs for compound Avogadro::Rendering::ArcStrip...
Generating docs for compound Avogadro::Rendering::ArrowGeometry...
Generating docs for compound Avogadro::Rendering::BezierGeometry...
Generating docs for compound Avogadro::Rendering::BSplineGeometry...
Generating docs for compound Avogadro::Rendering::BufferObject...
Generating docs for compound Avogadro::Rendering::Camera...
Generating docs for compound Avogadro::Rendering::Cartoon...
Generating docs for compound Avogadro::Rendering::ColorNormalVertex...
Generating docs for compound Avogadro::Rendering::ColorTextureVertex...
Generating docs for compound Avogadro::Rendering::CurveGeometry...
Generating docs for compound Avogadro::Rendering::Cylinder...
Generating docs for compound Avogadro::Rendering::CylinderColor...
Generating docs for compound Avogadro::Rendering::CylinderGeometry...
Generating docs for compound Avogadro::Rendering::DashedLineGeometry...
Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex...
Generating docs for compound Avogadro::Rendering::Drawable...
Generating docs for compound Avogadro::Rendering::EigenData...
Generating docs for compound Avogadro::Rendering::GeometryNode...
Generating docs for compound Avogadro::Rendering::GeometryVisitor...
Generating docs for compound Avogadro::Rendering::GLRenderer...
Generating docs for compound Avogadro::Rendering::GLRenderVisitor...
Generating docs for compound Avogadro::Rendering::GroupNode...
Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo...
Generating docs for compound Avogadro::Rendering::Identifier...
Generating docs for compound Avogadro::Rendering::Line...
Generating docs for compound Avogadro::Rendering::LineStripGeometry...
Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex...
Generating docs for compound Avogadro::Rendering::MeshGeometry...
Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex...
Generating docs for compound Avogadro::Rendering::Node...
Generating docs for compound Avogadro::Rendering::PLYVisitor...
Generating docs for compound Avogadro::Rendering::Point...
Generating docs for compound Avogadro::Rendering::POVRayVisitor...
Generating docs for compound Avogadro::Rendering::Primitive...
Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier...
Generating docs for compound Avogadro::Rendering::Quad...
Generating docs for compound Avogadro::Rendering::QuadOutline...
Generating docs for compound Avogadro::Rendering::Scene...
Generating docs for compound Avogadro::Rendering::Shader...
Generating docs for compound Avogadro::Rendering::ShaderInfo...
Generating docs for compound Avogadro::Rendering::ShaderProgram...
Generating docs for compound Avogadro::Rendering::SolidPipeline...
Generating docs for compound Avogadro::Rendering::Sphere...
Generating docs for compound Avogadro::Rendering::SphereColor...
Generating docs for compound Avogadro::Rendering::SphereGeometry...
Generating docs for compound Avogadro::Rendering::TextLabel2D...
Generating docs for compound Avogadro::Rendering::TextLabel3D...
Generating docs for compound Avogadro::Rendering::TextLabelBase...
Generating docs for compound Avogadro::Rendering::TextProperti/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:32: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:29: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:38: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:41: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:44: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:46: warning: Member setXAxisTitle(const char *title) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:48: warning: Member setYAxisTitle(const char *title) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:50: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:53: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented:
  parameter 'points'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag <rpcMethod> found
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="")
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented:
  parameter 'title'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented:
  parameter 'molecule'
  parameter 'newVolume'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented:
  parameter 'molecule'
  parameter 'newCellColMatrix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented:
  parameter 'value'
es...
Generating docs for compound Avogadro::Rendering::TextRenderStrategy...
Generating docs for compound Avogadro::Rendering::Texture2D...
Generating docs for compound Avogadro::Rendering::TransformNode...
Generating docs for compound Avogadro::Rendering::Visitor...
Generating docs for compound Avogadro::Rendering::VolumeGeometry...
Generating docs for compound Avogadro::Rendering::VRMLVisitor...
Generating docs for compound Avogadro::VTK::ChartDialog...
Generating docs for compound Avogadro::VTK::ChartWidget...
Generating docs for compound Avogadro::VTK::QVTKWidget...
Generating docs for compound Avogadro::VTK::vtkGLWidget...
Generating graph info page...
Generating directory documentation...
Generating index page...
Generating main page...
Generating page index...
Generating topic index...
Generating module index...
Generating module member index...
Generating namespace index...
Generating namespace member index...
Generating concept index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Generating XML output...
Generating XML output for class Avogadro::QtOpenGL::ActiveObjects
Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry
Generating XML output for class Avogadro::Core::AngleIterator
Generating XML output for class Avogadro::Rendering::ArcSector
Generating XML output for class Avogadro::Rendering::ArcStrip
Generating XML output for class Avogadro::Core::Array
Generating XML output for class Avogadro::Core::internal::ArrayRefContainer
Generating XML output for class Avogadro::Core::ArraySet
Generating XML output for class Avogadro::Rendering::ArrowGeometry
Generating XML output for class Avogadro::Core::Atom
Generating XML output for class Avogadro::Core::AtomTemplate
Generating XML output for class Avogadro::Core::AtomTyper
Generating XML output for class Avogadro::Core::AtomUtilities
Generating XML output for class Avogadro::Core::AvoSpglib
Generating XML output for class Avogadro::QtGui::BackgroundFileFormat
Generating XML output for class Avogadro::Core::BasisSet
Generating XML output for class Avogadro::MoleQueue::BatchJob
Generating XML output for class Avogadro::Rendering::BezierGeometry
Generating XML output for class Avogadro::Core::Bond
Generating XML output for class Avogadro::Core::BondTemplate
Generating XML output for class Avogadro::Rendering::BSplineGeometry
Generating XML output for class Avogadro::Rendering::BufferObject
Generating XML output for class Avogadro::Rendering::Camera
Generating XML output for class Avogadro::Rendering::Cartoon
Generating XML output for class Avogadro::Io::CaseInsensitiveComparator
Generating XML output for class Avogadro::Calc::ChargeManager
Generating XML output for class Avogadro::Calc::ChargeModel
Generating XML output for class Avogadro::VTK::ChartDialog
Generating XML output for class Avogadro::VTK::ChartWidget
Generating XML output for class Avogadro::Io::CjsonFormat
Generating XML output for class Avogadro::MoleQueue::Client
Generating XML output for class Avogadro::Io::CmlFormat
Generating XML output for class Avogadro::Core::Color3f
Generating XML output for class Avogadro::QtGui::ColorButton
Generating XML output for class Avogadro::Rendering::ColorNormalVertex
Generating XML output for class Avogadro::Rendering::ColorTextureVertex
Generating XML output for class Avogadro::QtGui::ContainerWidget
Generating XML output for class Avogadro::Core::CoordinateBlockGenerator
Generating XML output for class Avogadro::Core::CoordinateSet
Generating XML output for class Avogadro::Core::CrystalTools
Generating XML output for class Avogadro::Core::Cube
Generating XML output for class Avogadro::Rendering::CurveGeometry
Generating XML output for class Avogadro::QtGui::CustomElementDialog
Generating XML output for class Avogadro::Rendering::Cylinder
Generating XML output for class Avogadro::Rendering::CylinderCol/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented:
  parameter 'formatPrefix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented:
  parameter 'fvec'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented:
  parameter 'ui'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented:
  parameter 'atom'
  parameter 'numberOfHydrogens'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth)
or
Generating XML output for class Avogadro::Rendering::CylinderGeometry
Generating XML output for class Avogadro::Rendering::DashedLineGeometry
Generating XML output for class Avogadro::Io::DcdFormat
Generating XML output for class Avogadro::Calc::DefaultModel
Generating XML output for class Avogadro::Core::DihedralIterator
Generating XML output for class Avogadro::Rendering::Drawable
Generating XML output for class Avogadro::Rendering::EigenData
Generating XML output for class Avogadro::QtGui::ElementDetail
Generating XML output for class Avogadro::QtGui::ElementItem
Generating XML output for class Avogadro::Core::Elements
Generating XML output for class Avogadro::QtGui::ElementTranslator
Generating XML output for class Avogadro::Calc::EnergyCalculator
Generating XML output for class Avogadro::Calc::EnergyManager
Generating XML output for class Avogadro::QtGui::ExtensionPlugin
Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory
Generating XML output for class Avogadro::QtGui::FileBrowseWidget
Generating XML output for class Avogadro::Io::FileFormat
Generating XML output for class Avogadro::QtGui::FileFormatDialog
Generating XML output for class Avogadro::Io::FileFormatManager
Generating XML output for class Avogadro::Frustrum
Generating XML output for class Avogadro::QuantumIO::GamessukOut
Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput
Generating XML output for class Avogadro::QuantumIO::GaussianCube
Generating XML output for class Avogadro::QuantumIO::GaussianFchk
Generating XML output for class Avogadro::Core::GaussianSet
Generating XML output for class Avogadro::Core::GaussianSetTools
Generating XML output for class Avogadro::QtGui::GenericHighlighter
Generating XML output for class Avogadro::QuantumIO::GenericOutput
Generating XML output for class Avogadro::Rendering::GeometryNode
Generating XML output for class Avogadro::Rendering::GeometryVisitor
Generating XML output for class Avogadro::Rendering::GLRenderer
Generating XML output for class Avogadro::Rendering::GLRenderVisitor
Generating XML output for class Avogadro::QtOpenGL::GLWidget
Generating XML output for class Avogadro::Core::Graph
Generating XML output for class Avogadro::Io::GromacsFormat
Generating XML output for class Avogadro::Rendering::GroupNode
Generating XML output for class Avogadro::QuantumIO::GUKBasisSet
Generating XML output for class Avogadro::Core::hBondRecord
Generating XML output for class Avogadro::Io::Hdf5DataFormat
Generating XML output for class Avogadro::Core::ArraySet::Holder
Generating XML output for class Avogadro::QtGui::HydrogenTools
Generating XML output for class Avogadro::Rendering::Identifier
Generating XML output for class Avogadro::Rendering::Primitive::Identifier
Generating XML output for class Avogadro::MoleQueue::InputGenerator
Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog
Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget
Generating XML output for class Avogadro::QtGui::InterfaceScript
Generating XML output for class Avogadro::QtGui::InterfaceWidget
Generating XML output for class Avogadro::MoleQueue::JobObject
Generating XML output for class Avogadro::MoleQueue::JsonRpcClient
Generating XML output for class Avogadro::QtGui::JsonWidget
Generating XML output for class Avogadro::Io::LammpsDataFormat
Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat
Generating XML output for class Avogadro::Core::Layer
Generating XML output for class Avogadro::Core::LayerData
Generating XML output for class Avogadro::Core::LayerManager
Generating XML output for class Avogadro::QtGui::LayerModel
Generating XML output for class Avogadro::Calc::LennardJones
Generating XML output for class Avogadro::Rendering::Line
Generating XML output for class Avogadro::Rendering::LineStripGeometry
Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare
Generating XML output for class Avogadro::Io::MdlFormat
Generating XML output for class Avogadro::Core::Mesh
Generating XML output for class Avogadro::QtGui::MeshG/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented:
  parameter 'reverse'
  parameter 'parent'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented:
  parameter 'reverse'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented:
  parameter 'val2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented:
  parameter 'atomId1'
  parameter 'atomId2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented:
  parameter 'atomId'
enerator
Generating XML output for class Avogadro::Rendering::MeshGeometry
Generating XML output for class Avogadro::Io::MMTFFormat
Generating XML output for class Avogadro::QuantumIO::MoldenFile
Generating XML output for class Avogadro::Core::Molecule
Generating XML output for class Avogadro::QtGui::Molecule
Generating XML output for class Avogadro::Core::MoleculeInfo
Generating XML output for class Avogadro::QtGui::MoleculeModel
Generating XML output for class Avogadro::QtGui::MoleculeSystem
Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog
Generating XML output for class Avogadro::MoleQueue::MoleQueueManager
Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel
Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget
Generating XML output for class Avogadro::QuantumIO::MopacAux
Generating XML output for class Avogadro::QtGui::MultiViewWidget
Generating XML output for class Avogadro::Core::Mutex
Generating XML output for class Avogadro::Core::NameAtomTyper
Generating XML output for class Avogadro::Core::NeighborPerceiver
Generating XML output for class Avogadro::Rendering::Node
Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo
Generating XML output for class Avogadro::QuantumIO::NWChemJson
Generating XML output for class Avogadro::QuantumIO::NWChemLog
Generating XML output for class Avogadro::QuantumIO::ORCAOutput
Generating XML output for class Avogadro::Io::OutcarFormat
Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex
Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex
Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex
Generating XML output for class Avogadro::Io::PdbFormat
Generating XML output for class Avogadro::QtGui::PeriodicTableScene
Generating XML output for class Avogadro::QtGui::PeriodicTableView
Generating XML output for class Avogadro::QtGui::PersistentAtom
Generating XML output for class Avogadro::QtGui::PersistentBond
Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder
Generating XML output for class Avogadro::QtGui::PluginLayerManager
Generating XML output for class Avogadro::Rendering::PLYVisitor
Generating XML output for class Avogadro::Rendering::Point
Generating XML output for class Avogadro::Io::PoscarFormat
Generating XML output for class Avogadro::Rendering::POVRayVisitor
Generating XML output for class Avogadro::Rendering::Primitive
Generating XML output for class Avogadro::QtGui::PythonScript
Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy
Generating XML output for class Avogadro::Rendering::Quad
Generating XML output for class Avogadro::Rendering::QuadOutline
Generating XML output for class Avogadro::VTK::QVTKWidget
Generating XML output for class Avogadro::MoleQueue::BatchJob::Request
Generating XML output for class Avogadro::Core::Residue
Generating XML output for class Avogadro::Core::ResidueData
Generating XML output for class Avogadro::Core::RingPerceiver
Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule
Generating XML output for class Avogadro::QtGui::RWAtom
Generating XML output for class Avogadro::QtGui::RWBond
Generating XML output for class Avogadro::QtGui::RWLayerManager
Generating XML output for class Avogadro::QtGui::RWMolecule
Generating XML output for class Avogadro::Rendering::Scene
Generating XML output for class Avogadro::QtGui::ScenePlugin
Generating XML output for class Avogadro::QtGui::ScenePluginFactory
Generating XML output for class Avogadro::QtGui::ScenePluginModel
Generating XML output for class Avogadro::QtGui::ScriptLoader
Generating XML output for class Avogadro::Core::SecondaryStructureAssigner
Generating XML output for class Avogadro::Rendering::Shader
Generating XML output for class Avogadro::Rendering::ShaderInfo
Generating XML output for class Avogadro::Rendering::ShaderProgram
Generating XML output for class Avogadro::Core::SharedMutex
Generating XML output for class Avogadro::Core::SlaterSet
Generating XML output for class Avogadro::Core::SlaterSetTools
Generating XML output for class Avogadro::Rendering::SolidPipeline
Generating XML output for class Avogadro::Core::SpaceGroups
Generating XML output for class Avogadro::Rendering::Sphere
Generating XML output for class Avogadro::Rendering::SphereColor
Generating XML output for class Avogadro::Rendering::SphereGeometry
Generating XML output for class Avogadro::Core::SymbolAtomTyper
Generating XML output for class Avogadro::Rendering::TextLabel2D
Generating XML output for class Avogadro::Rendering::TextLabel3D
Generating XML output for class Avogadro::Rendering::TextLabelBase
Generating XML output for class Avogadro::Rendering::TextProperties
Generating XML output for class Avogadro::Rendering::TextRenderStrategy
Generating XML output for class Avogadro::Rendering::Texture2D
Generating XML output for class Avogadro::QtGui::ToolPlugin
Generating XML output for class Avogadro::QtGui::ToolPluginFactory
Generating XML output for class Avogadro::Rendering::TransformNode
Generating XML output for class Avogadro::Io::TrrFormat
Generating XML output for class Avogadro::Io::TurbomoleFormat
Generating XML output for class Avogadro::TypeTraits
Generating XML output for class Avogadro::TypeTraits< char >
Generating XML output for class Avogadro::TypeTraits< double >
Generating XML output for class Avogadro::TypeTraits< float >
Generating XML output for class Avogadro::TypeTraits< int >
Generating XML output for class Avogadro::TypeTraits< short >
Generating XML output for class Avogadro::TypeTraits< unsigned char >
Generating XML output for class Avogadro::TypeTraits< unsigned int >
Generating XML output for class Avogadro::TypeTraits< unsigned short >
Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand
Generating XML output for class Avogadro::Core::UnitCell
Generating XML output for class Avogadro::Core::Variant
Generating XML output for class Avogadro::Core::VariantMap
Generating XML output for class Avogadro::QtGui::ViewFactory
Generating XML output for class Avogadro::Rendering::Visitor
Generating XML output for class Avogadro::Rendering::VolumeGeometry
Generating XML output for class Avogadro::Rendering::VRMLVisitor
Generating XML output for class vtkAvogadroActor
Generating XML output for class Avogadro::VTK::vtkGLWidget
Generating XML output for class Avogadro::Io::XyzFormat
Generating XML output for namespace Avogadro
Generating XML output for namespace Avogadro::Calc
Generating XML output for namespace Avogadro::Core
Generating XML output for namespace Avogadro::Core::internal
Generating XML output for namespace Avogadro::Io
Generating XML output for namespace Avogadro::MoleQueue
Generating XML output for namespace Avogadro::MoleQueue::Ui
Generating XML output for namespace Avogadro::QtGui
Generating XML output for namespace Avogadro::QtGui::@110
Generating XML output for namespace Avogadro::QtGui::Ui
Generating XML output for namespace Avogadro::QtGui::Utilities
Generating XML output for namespace Avogadro::QtOpenGL
Generating XML output for namespace Avogadro::QtPlugins
Generating XML output for namespace Avogadro::QuantumIO
Generating XML output for namespace Avogadro::Rendering
Generating XML output for namespace Avogadro::VTK
Generating XML output for namespace cppoptlib
Generating XML output for namespace QtPlugins
Generating XML output for namespace std
Generating XML output for file chargemanager.h
Generating XML output for file chargemodel.h
Generating XML output for file defaultmodel.h
Generating XML output for file energycalculator.h
Generating XML output for file energymanager.h
Generating XML output for file lennardjones.h
Generating XML output for file lennardjonesdata.h
Generating XML output for file angleiterator.h
Generating XML output for file angletools.h
Generating XML output for file array.h
Generating XML output for file atom.h
Generating XML output for file atomtyper-inline.h
Generating XML output for file atomtyper.h
Generating XML output for file atomutilities.h
Generating XML output for file avogadrocore.h
Generating XML output for file avospglib.h
Generating XML output for file basisset.h
Generating XML output for file bond.h
Generating XML output for file color3f.h
Generating XML output for file coordinateblockgenerator.h
Generating XML output for file coordinateset.h
Generating XML output for file crystaltools.h
Generating XML output for file cube.h
Generating XML output for file dihedraliterator.h
Generating XML output for file elementdata.h
Generating XML output for file elements.h
Generating XML output for file gaussianset.h
Generating XML output for file gaussiansettools.h
Generating XML output for file graph.h
Generating XML output for file layer.h
Generating XML output for file layermanager.h
Generating XML output for file matrix.h
Generating XML output for file mdlvalence_p.h
Generating XML output for file mesh.h
Generating XML output for file mutex.h
Generating XML output for file nameatomtyper.h
Generating XML output for file neighborperceiver.h
Generating XML output for file residue.h
Generating XML output for file residuecolors.h
Generating XML output for file residuedata.h
Generating XML output for file ringperceiver.h
Generating XML output for file secondarystructure.h
Generating XML output for file sharedmutex.h
Generating XML output for file slaterset.h
Generating XML output for file slatersettools.h
Generating XML output for file spacegroupdata.h
Generating XML output for file spacegroups.h
Generating XML output for file symbolatomtyper.h
Generating XML output for file types.h
Generating XML output for file unitcell.h
Generating XML output for file variant-inline.h
Generating XML output for file variant.h
Generating XML output for file variantmap.h
Generating XML output for file vector.h
Generating XML output for file cjsonformat.h
Generating XML output for file cmlformat.h
Generating XML output for file dcdformat.h
Generating XML output for file fileformat.h
Generating XML output for file fileformatmanager.h
Generating XML output for file gromacsformat.h
Generating XML output for file hdf5dataformat.h
Generating XML output for file lammpsformat.h
Generating XML output for file mdlformat.h
Generating XML output for file mmtfformat.h
Generating XML output for file pdbformat.h
Generating XML output for file trrformat.h
Generating XML output for file turbomoleformat.h
Generating XML output for file vaspformat.h
Generating XML output for file xyzformat.h
Generating XML output for file batchjob.h
Generating XML output for file client.h
Generating XML output for file jobobject.h
Generating XML output for file jsonrpcclient.h
Generating XML output for file inputgenerator.h
Generating XML output for file inputgeneratordialog.h
Generating XML output for file inputgeneratorwidget.h
Generating XML output for file molequeuedialog.h
Generating XML output for file molequeuemanager.h
Generating XML output for file molequeuequeuelistmodel.h
Generating XML output for file molequeuewidget.h
Generating XML output for file backgroundfileformat.h
Generating XML output for file colorbutton.h
Generating XML output for file containerwidget.h
Generating XML output for file customelementdialog.h
Generating XML output for file elementdetail_p.h
Generating XML output for file elementitem_p.h
Generating XML output for file elementtranslator.h
Generating XML output for file extensionplugin.h
Generating XML output for file filebrowsewidget.h
Generating XML output for file fileformatdialog.h
Generating XML output for file generichighlighter.h
Generating XML output for file hydrogentools.h
Generating XML output for file interfacescript.h
Generating XML output for file interfacewidget.h
Generating XML output for file jsonwidget.h
Generating XML output for file layermodel.h
Generating XML output for file meshgenerator.h
Generating XML output for file core/molecule.h
Generating XML output for file qtgui/molecule.h
Generating XML output for file moleculemodel.h
Generating XML output for file multiviewwidget.h
Generating XML output for file periodictablescene_p.h
Generating XML output for file periodictableview.h
Generating XML output for file persistentatom.h
Generating XML output for file persistentbond.h
Generating XML output for file pluginlayermanager.h
Generating XML output for file pythonscript.h
Generating XML output for file rwlayermanager.h
Generating XML output for file rwmolecule.h
Generating XML output for file rwmolecule_undo.h
Generating XML output for file sceneplugin.h
Generating XML output for file scenepluginmodel.h
Generating XML output for file scriptloader.h
Generating XML output for file toolplugin.h
Generating XML output for file core/utilities.h
Generating XML output for file qtgui/utilities.h
Generating XML output for file viewfactory.h
Generating XML output for file activeobjects.h
Generating XML output for file glwidget.h
Generating XML output for file qttextrenderstrategy.h
Generating XML output for file gamessukout.h
Generating XML output for file gamessus.h
Generating XML output for file gaussiancube.h
Generating XML output for file gaussianfchk.h
Generating XML output for file genericoutput.h
Generating XML output for file molden.h
Generating XML output for file mopacaux.h
Generating XML output for file nwchemjson.h
Generating XML output for file nwchemlog.h
Generating XML output for file orca.h
Generating XML output for file ambientocclusionspheregeometry.h
Generating XML output for file arcsector.h
Generating XML output for file arcstrip.h
Generating XML output for file arrowgeometry.h
Generating XML output for file avogadrogl.h
Generating XML output for file avogadrorendering.h
Generating XML output for file beziergeometry.h
Generating XML output for file bsplinegeometry.h
Generating XML output for file bufferobject.h
Generating XML output for file camera.h
Generating XML output for file cartoongeometry.h
Generating XML output for file curvegeometry.h
Generating XML output for file cylindergeometry.h
Generating XML output for file dashedlinegeometry.h
Generating XML output for file drawable.h
Generating XML output for file geometrynode.h
Generating XML output for file geometryvisitor.h
Generating XML output for file glrenderer.h
Generating XML output for file glrendervisitor.h
Generating XML output for file groupnode.h
Generating XML output for file linestripgeometry.h
Generating XML output for file meshgeometry.h
Generating XML output for file node.h
Generating XML output for file plyvisitor.h
Generating XML output for file povrayvisitor.h
Generating XML output for file primitive.h
Generating XML output for file quad.h
Generating XML output for file quadoutline.h
Generating XML output for file scene.h
Generating XML output for file shader.h
Generating XML output for file shaderprogram.h
Generating XML output for file solidpipeline.h
Generating XML output for file spheregeometry.h
Generating XML output for file textlabel2d.h
Generating XML output for file textlabel3d.h
Generating XML output for file textlabelbase.h
Generating XML output for file textproperties.h
Generating XML output for file textrenderstrategy.h
Generating XML output for file texture2d.h
Generating XML output for file transformnode.h
Generating XML output for file visitor.h
Generating XML output for file volumegeometry.h
Generating XML output for file vrmlvisitor.h
Generating XML output for file chartdialog.h
Generating XML output for file chartwidget.h
Generating XML output for file qvtkwidget.h
Generating XML output for file vtkAvogadroActor.h
Generating XML output for file vtkglwidget.h
Generating XML output for file mainpage.dox
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/docs/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/
Generating XML output for the main page
Running plantuml with JAVA...
type lookup cache used 9068/65536 hits=38941 misses=10786
symbol lookup cache used 8262/65536 hits=65728 misses=8262
finished...
~/build/BUILD/avogadrolibs-1.98.1
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IiIhbv
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd avogadrolibs-1.98.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.98.1/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.98.1/build//CMakeFiles/progress.marks
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/CMakeFiles/pugixml.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core/CMakeFiles/Headers.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 27%] Automatic MOC for target QtGui
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 27%] Built target QtGui_autogen
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QtGui
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target QtOpenGL
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QtOpenGL_autogen
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target QtOpenGL
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target MoleQueue
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target MoleQueue_autogen
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target MoleQueue
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target QTAIMScenePlugin
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target QTAIMScenePlugin_autogen
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target QTAIMScenePlugin
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target ThreeDMol
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target ThreeDMol_autogen
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target ThreeDMol
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Automatic MOC for target ApplyColors
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target ApplyColors_autogen
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target ApplyColors
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Automatic MOC for target AlignTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target AlignTool_autogen
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target AlignTool
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Automatic MOC for target BondCentric
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Built target BondCentric_autogen
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target BondCentric
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Bonding
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Bonding_autogen
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Bonding
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Cartoons
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Cartoons_autogen
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Cartoons
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Centroid
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Centroid_autogen
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Built target Centroid
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Automatic MOC for target CopyPaste
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Built target CopyPaste_autogen
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Built target CopyPaste
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Automatic MOC for target Crystal
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Built target Crystal_autogen
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Built target Crystal
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Automatic MOC for target CrystalScene
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Built target CrystalScene_autogen
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Built target CrystalScene
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Automatic MOC for target CustomElements
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Built target CustomElements_autogen
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Built target CustomElements
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Automatic MOC for target Editor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Built target Editor_autogen
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target Editor
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Automatic MOC for target FetchPDB
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target FetchPDB_autogen
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Built target FetchPDB
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Automatic MOC for target Focus
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Built target Focus_autogen
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target Focus
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Automatic MOC for target Forcefield
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target Forcefield_autogen
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Built target Forcefield
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Automatic MOC for target Hydrogens
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Built target Hydrogens_autogen
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target Hydrogens
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Automatic MOC for target ImportPQR
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target ImportPQR_autogen
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Built target ImportPQR
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Automatic MOC for target NucleicInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Built target NucleicInput_autogen
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Built target NucleicInput
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Automatic MOC for target Label
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Built target Label_autogen
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Built target Label
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Automatic MOC for target LabelEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Built target LabelEditor_autogen
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Built target LabelEditor
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Automatic MOC for target LineFormatInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Built target LineFormatInput_autogen
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target LineFormatInput
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Automatic MOC for target Manipulator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target Manipulator_autogen
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 59%] Built target Manipulator
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 60%] Automatic MOC for target MeasureTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 60%] Built target MeasureTool_autogen
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target MeasureTool
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Automatic MOC for target Navigator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target Navigator_autogen
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Built target Navigator
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Automatic MOC for target NetworkDatabases
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Built target NetworkDatabases_autogen
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Built target NetworkDatabases
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Automatic MOC for target OpenBabel
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Built target OpenBabel_autogen
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Built target OpenBabel
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Automatic MOC for target PlayerTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Built target PlayerTool_autogen
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PlayerTool
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Automatic MOC for target PLY
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PLY_autogen
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PLY
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Automatic MOC for target POVRay
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target POVRay_autogen
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 67%] Built target POVRay
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target PropertyTables
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target PropertyTables_autogen
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target PropertyTables
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target ResetView
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target ResetView_autogen
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target ResetView
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target Select
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target Select_autogen
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Built target Select
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Automatic MOC for target Selection
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Built target Selection_autogen
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target Selection
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target SpaceGroup
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target SpaceGroup_autogen
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target SpaceGroup
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Automatic MOC for target Surfaces
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target Surfaces_autogen
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Built target Surfaces
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Automatic MOC for target LammpsInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Built target LammpsInput_autogen
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Built target LammpsInput
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Automatic MOC for target OpenMMInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Built target OpenMMInput_autogen
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Built target OpenMMInput
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Automatic MOC for target CoordinateEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Built target CoordinateEditor_autogen
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Built target CoordinateEditor
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Automatic MOC for target InsertFragment
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Built target InsertFragment_autogen
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Built target InsertFragment
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Automatic MOC for target MolecularProperties
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Built target MolecularProperties_autogen
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Built target MolecularProperties
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Automatic MOC for target SVG
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Built target SVG_autogen
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target SVG
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Automatic MOC for target Spectra
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target Spectra_autogen
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target Spectra
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Automatic MOC for target TemplateTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target TemplateTool_autogen
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target TemplateTool
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Automatic MOC for target VRML
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target VRML_autogen
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Built target VRML
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Automatic MOC for target apbs
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Built target apbs_autogen
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Built target apbs
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Automatic MOC for target Cp2kInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Built target Cp2kInput_autogen
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Built target Cp2kInput
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Automatic MOC for target GamessInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Built target GamessInput_autogen
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Built target GamessInput
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Automatic MOC for target commands
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Built target commands_autogen
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target commands
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Automatic MOC for target QuantumInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target QuantumInput_autogen
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target QuantumInput
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Automatic MOC for target ScriptCharges
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target ScriptCharges_autogen
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Built target ScriptCharges
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Automatic MOC for target ScriptFileFormats
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Built target ScriptFileFormats_autogen
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 88%] Built target ScriptFileFormats
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 89%] Automatic MOC for target PluginDownloader
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 89%] Built target PluginDownloader_autogen
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target PluginDownloader
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Automatic MOC for target BallStick
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target BallStick_autogen
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target BallStick
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Automatic MOC for target CloseContacts
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target CloseContacts_autogen
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 91%] Built target CloseContacts
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Automatic MOC for target Force
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Force_autogen
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Force
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Automatic MOC for target Licorice
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Licorice_autogen
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Licorice
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Automatic MOC for target Meshes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Meshes_autogen
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Meshes
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Automatic MOC for target NonCovalent
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target NonCovalent_autogen
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Built target NonCovalent
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Automatic MOC for target VanDerWaals
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Built target VanDerWaals_autogen
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Built target VanDerWaals
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Automatic MOC for target Wireframe
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Built target Wireframe_autogen
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 96%] Built target Wireframe
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 97%] Automatic MOC for target OverlayAxes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 97%] Built target OverlayAxes_autogen
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 97%] Built target OverlayAxes
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 98%] Automatic MOC for target QTAIMExtension
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 98%] Built target QTAIMExtension_autogen
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Built target QTAIMExtension
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Automatic MOC for target QtPlugins
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Built target QtPlugins_autogen
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[100%] Built target QtPlugins
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.98.1/build/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/libgwavi.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/angletools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/angleiterator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/array.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/avogadrocore.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/color3f.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/coordinateset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/matrix.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/types.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/utilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/vector.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCore.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCore.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCore.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCore.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/atom.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/atomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/atomtyper-inline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/atomutilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/basisset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/bond.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/crystaltools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/cube.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/dihedraliterator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/elements.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/gaussianset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/gaussiansettools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/graph.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/layer.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/layermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/mesh.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/molecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/mutex.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/nameatomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/neighborperceiver.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/residue.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/ringperceiver.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/secondarystructure.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/slaterset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/slatersettools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/spacegroups.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/symbolatomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/unitcell.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/variant.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/variant-inline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/variantmap.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/version.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/sharedmutex.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/avospglib.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCalc.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCalc.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCalc.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCalc.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/chargemodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/chargemanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/defaultmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/energycalculator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/energymanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/lennardjones.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/calc/avogadrocalcexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroIO.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroIO.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroIO.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroIO.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/cjsonformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/cmlformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/dcdformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/fileformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/fileformatmanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/gromacsformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/mdlformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/vaspformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/pdbformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/xyzformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/trrformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/turbomoleformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/lammpsformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/hdf5dataformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/mmtfformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/io/avogadroioexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQuantumIO.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQuantumIO.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQuantumIO.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQuantumIO.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/gamessus.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/genericoutput.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/molden.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/mopacaux.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/nwchemjson.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/nwchemlog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/orca.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/quantumio/avogadroquantumioexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroRendering.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroRendering.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroRendering.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroRendering.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/arcsector.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/arcstrip.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/arrowgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/avogadrogl.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/beziergeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/bsplinegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/bufferobject.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/camera.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/cartoongeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/curvegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/cylindergeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/dashedlinegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/drawable.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/geometrynode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/geometryvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/groupnode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/glrenderer.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/glrendervisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/linestripgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/meshgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/node.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/plyvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/povrayvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/primitive.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/quad.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/quadoutline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/scene.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/shader.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/shaderprogram.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/solidpipeline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/spheregeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/textlabel2d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/textlabel3d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/textlabelbase.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/textproperties.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/textrenderstrategy.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/texture2d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/transformnode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/visitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/volumegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtGui.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtGui.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtGui.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtGui.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/backgroundfileformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/colorbutton.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/containerwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/elementtranslator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/extensionplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/filebrowsewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/fileformatdialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/generichighlighter.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/hydrogentools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/interfacescript.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/interfacewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/jsonwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/layermodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/rwlayermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/meshgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/molecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/moleculemodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/multiviewwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/periodictableview.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/persistentatom.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/persistentbond.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/pluginlayermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/pythonscript.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/rwmolecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/sceneplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/scenepluginmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/scriptloader.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/toolplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/utilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/viewfactory.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtgui/avogadroqtguiexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtOpenGL.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtopengl/activeobjects.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtopengl/glwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroMoleQueue.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroMoleQueue.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroMoleQueue.so.1.98.1" to "/usr/lib64"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroMoleQueue.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/batchjob.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/inputgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/inputgeneratordialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/inputgeneratorwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/molequeuedialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/molequeuemanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/molequeuequeuelistmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/molequeuewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/molequeue/avogadromolequeueexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/ThreeDMol.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/ApplyColors.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/AlignTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/BondCentric.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Bonding.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Cartoons.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Centroid.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/CopyPaste.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Crystal.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/CrystalScene.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/CustomElements.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Editor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/FetchPDB.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Focus.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Forcefield.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/ani2x.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/gaff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/gfn1.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/gfn2.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/gfnff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/mmff94.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts/energy/uff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Hydrogens.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/ImportPQR.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/NucleicInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Label.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/LabelEditor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/LineFormatInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Manipulator.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/MeasureTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Navigator.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/NetworkDatabases.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/OpenBabel.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/PlayerTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/PLY.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/POVRay.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/PropertyTables.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/ResetView.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Select.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Selection.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/SpaceGroup.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/Surfaces.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/LammpsInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/OpenMMInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/CoordinateEditor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/staticplugins/InsertFragment.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/zeolites
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/zeolites/ZSM-5.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/zeolites/ZSM-5.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/titanates/MgTiO3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-tetrag.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/titanates/CaTiO3-Perovskite.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/titanates/BaTiO3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/CdTe.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/CdTe.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/BiTe.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/BiTe.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/Bi2Te3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/telurides/Bi2Te3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Zincblende.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Zincblende.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Wurtzite-2H.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Wurtzite-2H.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Sphalerite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/ZnS-Sphalerite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/SnS-Herzenbergite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/SnS-Herzenbergite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/Sb2S3-Stibnite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/Sb2S3-Stibnite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/PbS-Galena.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/PbS-Galena.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/HgS-Metacinnabar.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/HgS-Metacinnabar.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/FeS2-Pyrite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/FeS2-Pyrite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/FeS.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/FeS.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/CdS-Hawleyite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/CdS-Hawleyite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/CdS-Greenockite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/CdS-Greenockite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/Bi2S3-Bismuthinite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfides/Bi2S3-Bismuthinite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/SrSO4-Celestine.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/SrSO4-Celestine.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/PbSO4-Anglesite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/PbSO4-Anglesite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/Na2SO4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/Na2SO4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/MgSO4.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CuSO4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CuSO4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CoSO4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CoSO4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CaSO4-Anhydrite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CaSO4-Anhydrite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CaSO4-2(H2O)-Gypsum.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/BaSO4-Barite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/sulfates/BaSO4-Barite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/silicates
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/ZnSe.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/ZnSe.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/Sb2Se3-Antimonselite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/Sb2Se3-Antimonselite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/PbSe-Clausthalite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/PbSe-Clausthalite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/HgSe-Tiemannite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/HgSe-Tiemannite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/CdSe-Cadmoselite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/CdSe-Cadmoselite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/BiSe.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/BiSe.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/Bi2Se3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/selenides/Bi2Se3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/plugin.json
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/InP.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/InP.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/GaP.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/GaP.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/BP.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/phosphides/AlP.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZrO2-Cubic.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZrO2-Cubic.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZrO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZrO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZnO-Zincite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/ZnO-Zincite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/YbO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/YbO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Y2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Y2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/WO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/WO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/VO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/VO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/VO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/VO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/V2O5-Shcherbinaite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/V2O5-Shcherbinaite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/V2O3-Karelianite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/V2O3-Karelianite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/UO2-Uraninite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/UO2-Uraninite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/UO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/UO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Rutile.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Rutile.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Brookite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Brookite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Anatase.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TiO2-Anatase.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TaO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/TaO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SrO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SrO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SnO2-Cassiterite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SnO2-Cassiterite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SnO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SnO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SmO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SmO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Stishovite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Stishovite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-beta.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-beta.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-alpha.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-alpha.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Cristobalite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Cristobalite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Coesite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/SiO2-Coesite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Sc2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Sc2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/RuO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/RuO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Rh2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Rh2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Rb2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Rb2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PtO2-beta.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PtO2-beta.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PdO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PdO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PbO2-Scrutinyite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PbO2-Scrutinyite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PbO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/PbO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NiO-Bunsenite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NiO-Bunsenite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NiFe2O4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NiFe2O4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NbO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NbO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NbO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/NbO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Na2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Na2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MoO3-Molybdite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MoO3-Molybdite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MoO2-Tugarinovite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MoO2-Tugarinovite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MnO2-Pyrolusite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MnO2-Pyrolusite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MnO-Manganosite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MnO-Manganosite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MgO-Periclase.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/MgO-Periclase.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Li2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Li2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/La2O3-LanthanumOxide-A.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/La2O3-LanthanumOxide-A.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/K2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/K2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/IrO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/IrO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/In2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/In2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/In2O3-IndiumOxide.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/In2O3-IndiumOxide.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/HfO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/HfO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2-Argutite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2-Argutite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2-Argutite-tetrag.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/GeO2-Argutite-tetrag.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/FeO-Wustite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/FeO-Wustite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Fe3O4-Magnetite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Fe3O4-Magnetite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Fe2O3-Hematite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Fe2O3-Hematite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CuO-Tenorite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CuO-Tenorite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Cu2O-Cuprite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Cu2O-Cuprite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Cr2O3-Eskolaite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Cr2O3-Eskolaite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CoO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CoO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CoFe2O4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CoFe2O4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CeO2-Cerianite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CeO2-Cerianite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CdO-Monteponite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CdO-Monteponite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CaO-Lime.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/CaO-Lime.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/BaO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/BaO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/B6O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/B6O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/B2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/B2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Al2O3-Corundum.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Al2O3-Corundum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/AgO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/AgO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Ag2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/Ag2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/(MgAl2)O4-Spinel.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/oxides/(MgAl2)O4-Spinel.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/YBa2Cu3O6.9-YBCO.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/LiNbO3-LithiumNiobate.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/LaAlO3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/H3N-Ammonia.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/H3N-Ammonia.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/FeMnO3-Bixbyite.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/C10H10Fe-Ferrocene.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/C10H10Fe-Ferrocene.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/TiN-Osbornite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/TiN-Osbornite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/Si3N4-beta.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/Si3N4-beta.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/InN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/GaN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/GaN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/BN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/BN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/AlN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/nitrides/AlN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/PtBi.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/PtBi.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/FePt-Tetraferroplatinum.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/FePt-Tetraferroplatinum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/Cu2MnAl-Heusler.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/Cu2MnAl-Heusler.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/CoFe-Wairauite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/CoFe-Wairauite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/BiPd-Sobolevskite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/BiPd-Sobolevskite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/AuCu-Tetraauricupride.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/AuCu-Tetraauricupride.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/Au3Cu-Bogdanovite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/Au3Cu-Bogdanovite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-VII.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-VII.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-VI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-VI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-Ih.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-Ih.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-IV.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-IV.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-III.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-III.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-II.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/ice/H2O-Ice-II.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/Ni(OH)2-Theophrastite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/Mg(OH)2-Brucite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/LiOH.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/LiOH.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/KOH.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/KOH.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydroxides/Ca(OH)2-Portlandite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/PdH.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/PdH.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/NaH.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/NaH.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/LiH.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/KH.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/hydrides/KH.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/PbFCl-Matlockite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/PbFCl-Matlockite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/NaCl-Halite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/NaCl-Halite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/LiCl.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/LiCl.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/KCl-Sylvite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/KCl-Sylvite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/KBr.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/KBr.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/HgCl-Calomel.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/HgCl-Calomel.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/FeCl3-Molysite.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CsCl.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CrCl3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CrCl3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CrCl2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CrCl2.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CdI2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CdCl2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CdCl2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CaF2-Fluorite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CaF2-Fluorite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/avogadro2/crystals/halides/CaCl2-Hydrophilite.png
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtPlugins.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtPlugins.so.1.98.1" to "/usr/lib64"
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtplugins/pluginmanager.h
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtplugins/avogadrostaticqtplugins.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/include/avogadro2/avogadro/qtplugins/avogadroqtpluginsexport.h
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake
make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
+ cp -a /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/
+ /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gaff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/uff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gaff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/uff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change
+ ln -sf /usr/lib64/python3.12/site-packages/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/avogadro2/scripts
+ chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCalc.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/libAvogadroRendering.so
+ rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.98.1-4.fc40 --unique-debug-suffix -1.98.1-4.fc40.x86_64 --unique-debug-src-base avogadro2-libs-1.98.1-4.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadrolibs-1.98.1
find-debuginfo: starting
Extracting debug info from 9 files
DWARF-compressing 9 files
sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.98.1-4.fc40.x86_64
17362 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/uff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/gaff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/uff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/mmff94.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/gaff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib64/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: avogadro2-libs-1.98.1-4.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HMDr0W
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/README-avogenerators.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.g6wOJU
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/molecules/LICENSE-molecules /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts
Provides: avogadro2-libs = 1.98.1-4.fc40 avogadro2-libs(x86-64) = 1.98.1-4.fc40 avogadro2-libs-static = 0:1.98.1-4.fc40 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.98.1-4.fc40 python3.12-avogadro2-libs = 1.98.1-4.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGLEW.so.2.2()(64bit) libGLX.so.0()(64bit) libOpenGL.so.0()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.2()(64bit) python(abi) = 3.12 rtld(GNU_HASH)
Obsoletes: python-avogadro2-libs < 1.98.1-4.fc40
Processing files: avogadro2-libs-devel-1.98.1-4.fc40.x86_64
Provides: avogadro2-libs-devel = 1.98.1-4.fc40 avogadro2-libs-devel(x86-64) = 1.98.1-4.fc40 cmake(AvogadroLibs) = 1.98.1 cmake(avogadrolibs) = 1.98.1 libgwavi-static
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: cmake-filesystem(x86-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit)
Processing files: avogadro2-libs-doc-1.98.1-4.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NQ8FTQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/doc/avogadro2-libs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BUtykH
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64/usr/share/licenses/avogadro2-libs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: avogadro2-libs-doc = 1.98.1-4.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: avogadro2-libs-debugsource-1.98.1-4.fc40.x86_64
Provides: avogadro2-libs-debugsource = 1.98.1-4.fc40 avogadro2-libs-debugsource(x86-64) = 1.98.1-4.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: avogadro2-libs-debuginfo-1.98.1-4.fc40.x86_64
Provides: avogadro2-libs-debuginfo = 1.98.1-4.fc40 avogadro2-libs-debuginfo(x86-64) = 1.98.1-4.fc40 debuginfo(build-id) = 0875c602c272c10fa7990aeda03ded7ced136fb9 debuginfo(build-id) = 3fd3abd7767ee477b675476d17cacf420b5be9d4 debuginfo(build-id) = 4528e6f88f33baff544ad7cffafe498942aafe38 debuginfo(build-id) = d762eb7c8ee7ab3ffc3568313c93dae4578f1282 debuginfo(build-id) = deb60e888aa74f47d26651d2544331473b75ad78 debuginfo(build-id) = e2aacf066cf59d35fdc505e7f6cff732a6deb30f debuginfo(build-id) = e7e0ef79e5083b29ea20fef8623b4c7f8c3fba6d debuginfo(build-id) = f0b438d81b465ac834f8ed58a93f605529887424 debuginfo(build-id) = fb9dca82829d11d76036ca96ae39e424ae2aaa9c libAvogadroCalc.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroCore.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroIO.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroMoleQueue.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroQtGui.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroQtOpenGL.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroQtPlugins.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroQuantumIO.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit) libAvogadroRendering.so.1.98.1-1.98.1-4.fc40.x86_64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: avogadro2-libs-debugsource(x86-64) = 1.98.1-4.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64
Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.98.1-4.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.98.1-4.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.98.1-4.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-1.98.1-4.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.98.1-4.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rW0nLv
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-4.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fVZa7L
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ rm -rf avogadrolibs-1.98.1 avogadrolibs-1.98.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts
Finish: rpmbuild avogadro2-libs-1.98.1-4.fc40.src.rpm
Finish: build phase for avogadro2-libs-1.98.1-4.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706299090.170202/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.98.1-4.fc40.src.rpm) Config(child) 10 minutes 8 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "avogadro2-libs-devel",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "x86_64"
        },
        {
            "name": "avogadro2-libs",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "x86_64"
        },
        {
            "name": "avogadro2-libs-debuginfo",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "x86_64"
        },
        {
            "name": "avogadro2-libs",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "src"
        },
        {
            "name": "avogadro2-libs-debugsource",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "x86_64"
        },
        {
            "name": "avogadro2-libs-doc",
            "epoch": null,
            "version": "1.98.1",
            "release": "4.fc40",
            "arch": "noarch"
        }
    ]
}
RPMResults finished