Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c193' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8520061-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.2
PID: 8519
Logging PID: 8520
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'bootstrap': 'off',
 'build_id': 8520061,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '336c10d4c96cd1aab933bcd3746c37558a5f37af',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/apbs',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'apbs',
 'package_version': '3.0.0-26',
 'project_dirname': 'python3.12',
 'project_name': 'python3.12',
 'project_owner': '@python',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.12/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': '@python/python3.12--https://src.fedoraproject.org/user/releng',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': None,
 'submitter': 'https://src.fedoraproject.org/user/releng',
 'tags': [],
 'task_id': '8520061-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/apbs /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12/apbs', '/var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs'...

Running: git checkout 336c10d4c96cd1aab933bcd3746c37558a5f37af --

cmd: ['git', 'checkout', '336c10d4c96cd1aab933bcd3746c37558a5f37af', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs
rc: 0
stdout: 
stderr: Note: switching to '336c10d4c96cd1aab933bcd3746c37558a5f37af'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 336c10d automatic import of apbs

Running: dist-git-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading apbs-3.0.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o apbs-3.0.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12/apbs/apbs-3.0.0.tar.gz/md5/f54dff1a670e1dc766d5ad3f775b5de8/apbs-3.0.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 25.9M  100 25.9M    0     0  40.3M      0 --:--:-- --:--:-- --:--:-- 40.3M
INFO: Reading stdout from command: md5sum apbs-3.0.0.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1737026491.844736 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1737026491.844736 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs/apbs.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (fallback)
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.20.0-1.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  python3-dnf-4.22.0-1.fc41.noarch
  python3-dnf-plugins-core-4.10.0-1.fc41.noarch
  dnf5-5.2.8.1-3.fc41.x86_64
  dnf5-plugins-5.2.8.1-3.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |   8.9 MiB/s |  21.6 MiB |  00m02s
 Copr repository                        100% |  22.5 MiB/s |   3.7 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  48.2 MiB/s |  14.3 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository                                                         Size
Installing group/module packages:
 bash                              x86_64 5.2.37-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.7 KiB
 coreutils                         x86_64 9.5-12.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 MiB
 cpio                              x86_64 2.15-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common             noarch 42-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.8 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack            x86_64 2.40.9000-28.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              x86_64 3.11-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                              x86_64 1.13-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 389.0 KiB
 info                              x86_64 7.2-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 355.1 KiB
 patch                             x86_64 2.7.6-25.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.7 KiB
 redhat-rpm-config                 noarch 300-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.8 KiB
 rpm-build                         x86_64 4.20.0-6.fc42              copr_base                                                     185.8 KiB
 sed                               x86_64 4.9-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.5 KiB
 shadow-utils                      x86_64 2:4.17.0-3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                               x86_64 2:1.35-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 unzip                             x86_64 6.0-65.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398.2 KiB
 util-linux                        x86_64 2.40.4-1.fc42              copr_base                                                       3.5 MiB
 which                             x86_64 2.21-42.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.2 KiB
 xz                                x86_64 1:5.6.3-2.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.5.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 alternatives                      x86_64 1.31-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.8 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        x86_64 4.0.3-1.fc42               copr_base                                                     351.3 KiB
 authselect                        x86_64 1.5.0-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 157.5 KiB
 authselect-libs                   x86_64 1.5.0-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 822.2 KiB
 basesystem                        noarch 11-21.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          x86_64 2.43.50-9.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.8 MiB
 build-reproducibility-srpm-macros noarch 0.5.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.7 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-4.fc42  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 coreutils-common                  x86_64 9.5-12.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB
 crypto-policies                   noarch 20241128-1.gitbb7b0b0.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.3 KiB
 curl                              x86_64 8.11.1-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 452.0 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-28.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 debugedit                         x86_64 5.1-2.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.3 KiB
 dwz                               x86_64 0.15-8.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 299.2 KiB
 ed                                x86_64 1.21-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB
 efi-srpm-macros                   noarch 5-13.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.2 KiB
 elfutils                          x86_64 0.192-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 elfutils-debuginfod-client        x86_64 0.192-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.4 KiB
 elfutils-default-yama-scope       noarch 0.192-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   x86_64 0.192-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 elfutils-libs                     x86_64 0.192-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 662.9 KiB
 fedora-gpg-keys                   noarch 42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.2 KiB
 fedora-release                    noarch 42-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch 42-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 719.0   B
 fedora-repos                      noarch 42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              x86_64 5.45-8.fc42                copr_base                                                     103.7 KiB
 file-libs                         x86_64 5.45-8.fc42                copr_base                                                       9.9 MiB
 filesystem                        x86_64 3.18-34.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 filesystem-srpm-macros            noarch 3.18-34.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.2 KiB
 fonts-srpm-macros                 noarch 1:2.0.5-19.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       x86_64 15.2-6.fc42                copr_base                                                      12.7 MiB
 gdbm                              x86_64 1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0   B
 glibc                             x86_64 2.40.9000-28.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.7 MiB
 glibc-common                      x86_64 2.40.9000-28.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                 x86_64 2.40.9000-28.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.0 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch 3.6.0-5.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           x86_64 2.14-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.1 KiB
 json-c                            x86_64 0.18-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.4 KiB
 krb5-libs                         x86_64 1.21.3-3.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0 KiB
 libarchive                        x86_64 3.7.7-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 932.3 KiB
 libattr                           x86_64 2.5.2-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 libblkid                          x86_64 2.40.4-1.fc42              copr_base                                                     261.2 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837.6 KiB
 libcap                            x86_64 2.71-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 223.4 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.2 KiB
 libcom_err                        x86_64 1.47.2-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.9 KiB
 libcurl                           x86_64 8.11.1-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 817.3 KiB
 libeconf                          x86_64 0.7.5-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.7 KiB
 libevent                          x86_64 2.1.12-14.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 895.7 KiB
 libfdisk                          x86_64 2.40.4-1.fc42              copr_base                                                     364.4 KiB
 libffi                            x86_64 3.4.6-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  86.4 KiB
 libgcc                            x86_64 15.0.1-0.3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.9 KiB
 libgomp                           x86_64 15.0.1-0.3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 529.6 KiB
 libidn2                           x86_64 2.3.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.1 KiB
 libmount                          x86_64 2.40.4-1.fc42              copr_base                                                     352.8 KiB
 libnghttp2                        x86_64 1.64.0-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 174.5 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.8 KiB
 libselinux                        x86_64 3.8-0.rc3.1.fc42.2         copr_base                                                     191.6 KiB
 libsemanage                       x86_64 3.8-0.rc3.1.fc42           copr_base                                                     305.3 KiB
 libsepol                          x86_64 3.8-0.rc3.1.fc42           copr_base                                                     812.3 KiB
 libsmartcols                      x86_64 2.40.4-1.fc42              copr_base                                                     176.2 KiB
 libssh                            x86_64 0.11.1-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 569.6 KiB
 libssh-config                     noarch 0.11.1-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         x86_64 15.0.1-0.3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.7 KiB
 libtirpc                          x86_64 1.3.6-1.rc3.fc42           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.6 KiB
 libtool-ltdl                      x86_64 2.5.4-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.1 KiB
 libunistring                      x86_64 1.1-8.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libuuid                           x86_64 2.40.4-1.fc42              copr_base                                                      39.9 KiB
 libverto                          x86_64 0.3.2-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.5 KiB
 libxcrypt                         x86_64 4.4.38-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 269.9 KiB
 libxml2                           x86_64 2.12.9-1.fc42              copr_base                                                       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795.9 KiB
 lua-libs                          x86_64 5.4.7-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          x86_64 2.6.9-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 648.5 KiB
 openssl-libs                      x86_64 1:3.2.2-11.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.7 MiB
 p11-kit                           x86_64 0.25.5-4.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-4.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.8 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               x86_64 1.7.0-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 pam-libs                          x86_64 1.7.0-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.4 KiB
 pcre2                             x86_64 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           x86_64 2.3.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0   B
 popt                              x86_64 1.19-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch 1.16.4-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 6.8.1-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          x86_64 8.2-11.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB
 rpm                               x86_64 4.20.0-6.fc42              copr_base                                                       3.1 MiB
 rpm-build-libs                    x86_64 4.20.0-6.fc42              copr_base                                                     204.1 KiB
 rpm-libs                          x86_64 4.20.0-6.fc42              copr_base                                                     710.4 KiB
 rpm-sequoia                       x86_64 1.7.0-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                copr_base                                                       4.8 KiB
 setup                             noarch 2.15.0-9.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       x86_64 3.47.2-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 systemd-libs                      x86_64 257.2-7.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 util-linux-core                   x86_64 2.40.4-1.fc42              copr_base                                                       1.5 MiB
 xxhash-libs                       x86_64 0.8.3-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.5 KiB
 xz-libs                           x86_64 1:5.6.3-2.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               x86_64 3.0-42.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 695.9 KiB
 zlib-ng-compat                    x86_64 2.2.3-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138.5 KiB
 zstd                              x86_64 1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
Installing groups:
 Buildsystem building group                                                                                                                 

Transaction Summary:
 Installing:       155 packages

Total size of inbound packages is 51 MiB. Need to download 51 MiB.
After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B).
[  1/155] bzip2-0:1.0.8-19.fc41.x86_64  100% | 772.4 KiB/s |  52.5 KiB |  00m00s
[  2/155] cpio-0:2.15-2.fc41.x86_64     100% |   7.3 MiB/s | 285.2 KiB |  00m00s
[  3/155] coreutils-0:9.5-12.fc42.x86_6 100% |   8.2 MiB/s | 953.3 KiB |  00m00s
[  4/155] bash-0:5.2.37-1.fc42.x86_64   100% |  14.9 MiB/s |   1.8 MiB |  00m00s
[  5/155] diffutils-0:3.10-8.fc41.x86_6 100% |  19.4 MiB/s | 397.2 KiB |  00m00s
[  6/155] fedora-release-common-0:42-0. 100% |   1.4 MiB/s |  24.0 KiB |  00m00s
[  7/155] findutils-1:4.10.0-4.fc41.x86 100% |  22.9 MiB/s | 539.8 KiB |  00m00s
[  8/155] glibc-minimal-langpack-0:2.40 100% |   6.4 MiB/s | 124.3 KiB |  00m00s
[  9/155] gawk-0:5.3.0-4.fc41.x86_64    100% |  31.2 MiB/s |   1.1 MiB |  00m00s
[ 10/155] grep-0:3.11-9.fc41.x86_64     100% |  14.1 MiB/s | 289.7 KiB |  00m00s
[ 11/155] gzip-0:1.13-2.fc41.x86_64     100% |   8.9 MiB/s | 164.1 KiB |  00m00s
[ 12/155] info-0:7.2-1.fc42.x86_64      100% |   9.6 MiB/s | 176.3 KiB |  00m00s
[ 13/155] patch-0:2.7.6-25.fc41.x86_64  100% |   6.7 MiB/s | 131.0 KiB |  00m00s
[ 14/155] redhat-rpm-config-0:300-1.fc4 100% |   4.4 MiB/s |  76.1 KiB |  00m00s
[ 15/155] sed-0:4.9-3.fc41.x86_64       100% |  15.1 MiB/s | 309.3 KiB |  00m00s
[ 16/155] shadow-utils-2:4.17.0-3.fc42. 100% |  41.8 MiB/s |   1.2 MiB |  00m00s
[ 17/155] tar-2:1.35-4.fc41.x86_64      100% |  27.7 MiB/s | 852.1 KiB |  00m00s
[ 18/155] unzip-0:6.0-65.fc42.x86_64    100% |   8.2 MiB/s | 184.5 KiB |  00m00s
[ 19/155] rpm-build-0:4.20.0-6.fc42.x86 100% |   1.1 MiB/s |  68.3 KiB |  00m00s
[ 20/155] which-0:2.21-42.fc41.x86_64   100% |   2.4 MiB/s |  41.6 KiB |  00m00s
[ 21/155] xz-1:5.6.3-2.fc42.x86_64      100% |  21.5 MiB/s | 461.7 KiB |  00m00s
[ 22/155] xz-libs-1:5.6.3-2.fc42.x86_64 100% |   5.5 MiB/s | 111.9 KiB |  00m00s
[ 23/155] glibc-0:2.40.9000-28.fc42.x86 100% |  49.9 MiB/s |   2.2 MiB |  00m00s
[ 24/155] bzip2-libs-0:1.0.8-19.fc41.x8 100% |   2.1 MiB/s |  41.1 KiB |  00m00s
[ 25/155] util-linux-0:2.40.4-1.fc42.x8 100% |  12.5 MiB/s |   1.0 MiB |  00m00s
[ 26/155] libselinux-0:3.8-0.rc3.1.fc42 100% |   9.9 MiB/s |  91.7 KiB |  00m00s
[ 27/155] libacl-0:2.3.2-2.fc41.x86_64  100% |   1.4 MiB/s |  24.5 KiB |  00m00s
[ 28/155] audit-libs-0:4.0.3-1.fc42.x86 100% |  12.2 MiB/s | 125.4 KiB |  00m00s
[ 29/155] libattr-0:2.5.2-4.fc41.x86_64 100% | 908.6 KiB/s |  18.2 KiB |  00m00s
[ 30/155] libeconf-0:0.7.5-1.fc42.x86_6 100% |   1.8 MiB/s |  33.1 KiB |  00m00s
[ 31/155] filesystem-0:3.18-34.fc42.x86 100% |  41.1 MiB/s |   1.3 MiB |  00m00s
[ 32/155] libsemanage-0:3.8-0.rc3.1.fc4 100% |  11.4 MiB/s | 116.6 KiB |  00m00s
[ 33/155] libxcrypt-0:4.4.38-2.fc42.x86 100% |   6.0 MiB/s | 117.0 KiB |  00m00s
[ 34/155] pam-libs-0:1.7.0-3.fc42.x86_6 100% |   3.0 MiB/s |  58.0 KiB |  00m00s
[ 35/155] setup-0:2.15.0-9.fc42.noarch  100% |   8.1 MiB/s | 149.6 KiB |  00m00s
[ 36/155] build-reproducibility-srpm-ma 100% | 603.8 KiB/s |  11.5 KiB |  00m00s
[ 37/155] ansible-srpm-macros-0:1-16.fc 100% |   1.0 MiB/s |  20.8 KiB |  00m00s
[ 38/155] glibc-gconv-extra-0:2.40.9000 100% |  46.1 MiB/s |   1.5 MiB |  00m00s
[ 39/155] efi-srpm-macros-0:5-13.fc42.n 100% |   1.2 MiB/s |  22.5 KiB |  00m00s
[ 40/155] dwz-0:0.15-8.fc42.x86_64      100% |   7.1 MiB/s | 139.1 KiB |  00m00s
[ 41/155] file-0:5.45-8.fc42.x86_64     100% |   4.4 MiB/s |  49.1 KiB |  00m00s
[ 42/155] filesystem-srpm-macros-0:3.18 100% |   1.5 MiB/s |  25.3 KiB |  00m00s
[ 43/155] forge-srpm-macros-0:0.4.0-1.f 100% |   1.1 MiB/s |  19.8 KiB |  00m00s
[ 44/155] fonts-srpm-macros-1:2.0.5-19. 100% |   1.6 MiB/s |  27.1 KiB |  00m00s
[ 45/155] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 569.8 KiB/s |   9.1 KiB |  00m00s
[ 46/155] fpc-srpm-macros-0:1.3-13.fc41 100% | 468.3 KiB/s |   8.0 KiB |  00m00s
[ 47/155] gnat-srpm-macros-0:6-6.fc41.n 100% | 526.6 KiB/s |   9.0 KiB |  00m00s
[ 48/155] kernel-srpm-macros-0:1.0-24.f 100% | 580.5 KiB/s |   9.9 KiB |  00m00s
[ 49/155] go-srpm-macros-0:3.6.0-5.fc42 100% |   1.5 MiB/s |  28.0 KiB |  00m00s
[ 50/155] lua-srpm-macros-0:1-14.fc41.n 100% | 522.3 KiB/s |   8.9 KiB |  00m00s
[ 51/155] ocaml-srpm-macros-0:10-3.fc41 100% | 575.0 KiB/s |   9.2 KiB |  00m00s
[ 52/155] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s |   7.7 KiB |  00m00s
[ 53/155] package-notes-srpm-macros-0:0 100% | 614.3 KiB/s |   9.8 KiB |  00m00s
[ 54/155] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s |   8.5 KiB |  00m00s
[ 55/155] python-srpm-macros-0:3.13-3.f 100% |   1.4 MiB/s |  23.7 KiB |  00m00s
[ 56/155] pyproject-srpm-macros-0:1.16. 100% | 826.9 KiB/s |  14.1 KiB |  00m00s
[ 57/155] rpm-0:4.20.0-6.fc42.x86_64    100% |  33.5 MiB/s | 514.7 KiB |  00m00s
[ 58/155] qt5-srpm-macros-0:5.15.15-1.f 100% | 556.2 KiB/s |   8.9 KiB |  00m00s
[ 59/155] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 579.2 KiB/s |   9.3 KiB |  00m00s
[ 60/155] rust-srpm-macros-0:26.3-3.fc4 100% |   1.4 MiB/s |  12.7 KiB |  00m00s
[ 61/155] zig-srpm-macros-0:1-3.fc41.no 100% | 507.7 KiB/s |   8.1 KiB |  00m00s
[ 62/155] zip-0:3.0-42.fc42.x86_64      100% |  13.2 MiB/s | 256.7 KiB |  00m00s
[ 63/155] ed-0:1.21-1.fc42.x86_64       100% |   4.6 MiB/s |  80.2 KiB |  00m00s
[ 64/155] ncurses-libs-0:6.5-2.20240629 100% |  16.3 MiB/s | 334.0 KiB |  00m00s
[ 65/155] pcre2-0:10.44-1.fc41.1.x86_64 100% |  11.9 MiB/s | 243.1 KiB |  00m00s
[ 66/155] glibc-common-0:2.40.9000-28.f 100% |  17.5 MiB/s | 393.2 KiB |  00m00s
[ 67/155] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s |   7.4 KiB |  00m00s
[ 68/155] libgcc-0:15.0.1-0.3.fc42.x86_ 100% |   5.8 MiB/s | 106.0 KiB |  00m00s
[ 69/155] gmp-1:6.3.0-2.fc41.x86_64     100% |  15.5 MiB/s | 318.0 KiB |  00m00s
[ 70/155] mpfr-0:4.2.1-5.fc41.x86_64    100% |  16.9 MiB/s | 346.3 KiB |  00m00s
[ 71/155] readline-0:8.2-11.fc42.x86_64 100% |  11.0 MiB/s | 213.4 KiB |  00m00s
[ 72/155] fedora-repos-0:42-0.4.noarch  100% | 515.5 KiB/s |   9.3 KiB |  00m00s
[ 73/155] fedora-gpg-keys-0:42-0.4.noar 100% |   6.8 MiB/s | 125.2 KiB |  00m00s
[ 74/155] fedora-repos-rawhide-0:42-0.4 100% | 553.2 KiB/s |   8.9 KiB |  00m00s
[ 75/155] elfutils-libelf-0:0.192-7.fc4 100% |  11.1 MiB/s | 204.6 KiB |  00m00s
[ 76/155] libcap-0:2.71-2.fc42.x86_64   100% |   3.6 MiB/s |  78.1 KiB |  00m00s
[ 77/155] coreutils-common-0:9.5-12.fc4 100% |  47.6 MiB/s |   2.1 MiB |  00m00s
[ 78/155] systemd-libs-0:257.2-7.fc42.x 100% |  18.8 MiB/s | 771.5 KiB |  00m00s
[ 79/155] openssl-libs-1:3.2.2-11.fc42. 100% |  36.8 MiB/s |   2.2 MiB |  00m00s
[ 80/155] zlib-ng-compat-0:2.2.3-1.fc42 100% |   3.9 MiB/s |  75.6 KiB |  00m00s
[ 81/155] add-determinism-0:0.5.0-1.fc4 100% |  18.8 MiB/s | 848.7 KiB |  00m00s
[ 82/155] authselect-libs-0:1.5.0-8.fc4 100% |  10.5 MiB/s | 204.7 KiB |  00m00s
[ 83/155] libcap-ng-0:0.8.5-3.fc41.x86_ 100% |   1.8 MiB/s |  32.6 KiB |  00m00s
[ 84/155] libblkid-0:2.40.4-1.fc42.x86_ 100% |   4.6 MiB/s | 121.4 KiB |  00m00s
[ 85/155] libfdisk-0:2.40.4-1.fc42.x86_ 100% |   8.4 MiB/s | 154.7 KiB |  00m00s
[ 86/155] libsmartcols-0:2.40.4-1.fc42. 100% |   4.4 MiB/s |  81.1 KiB |  00m00s
[ 87/155] libuuid-0:2.40.4-1.fc42.x86_6 100% |   1.6 MiB/s |  27.9 KiB |  00m00s
[ 88/155] libmount-0:2.40.4-1.fc42.x86_ 100% |   6.2 MiB/s | 151.9 KiB |  00m00s
[ 89/155] pam-0:1.7.0-3.fc42.x86_64     100% |  22.0 MiB/s | 517.9 KiB |  00m00s
[ 90/155] util-linux-core-0:2.40.4-1.fc 100% |  18.0 MiB/s | 479.2 KiB |  00m00s
[ 91/155] debugedit-0:5.1-2.fc42.x86_64 100% |   4.0 MiB/s |  78.2 KiB |  00m00s
[ 92/155] elfutils-0:0.192-7.fc42.x86_6 100% |  18.1 MiB/s | 499.5 KiB |  00m00s
[ 93/155] libarchive-0:3.7.7-1.fc42.x86 100% |  17.6 MiB/s | 413.9 KiB |  00m00s
[ 94/155] pkgconf-pkg-config-0:2.3.0-1. 100% | 500.5 KiB/s |  10.0 KiB |  00m00s
[ 95/155] rpm-build-libs-0:4.20.0-6.fc4 100% |   8.6 MiB/s |  96.8 KiB |  00m00s
[ 96/155] popt-0:1.19-7.fc41.x86_64     100% |   2.9 MiB/s |  59.3 KiB |  00m00s
[ 97/155] rpm-libs-0:4.20.0-6.fc42.x86_ 100% |  15.4 MiB/s | 298.8 KiB |  00m00s
[ 98/155] zstd-0:1.5.6-2.fc41.x86_64    100% |  20.4 MiB/s | 481.5 KiB |  00m00s
[ 99/155] curl-0:8.11.1-2.fc42.x86_64   100% |  11.3 MiB/s | 220.2 KiB |  00m00s
[100/155] libsepol-0:3.8-0.rc3.1.fc42.x 100% |  14.8 MiB/s | 333.1 KiB |  00m00s
[101/155] binutils-0:2.43.50-9.fc42.x86 100% |  40.5 MiB/s |   5.8 MiB |  00m00s
[102/155] file-libs-0:5.45-8.fc42.x86_6 100% |  37.3 MiB/s | 764.1 KiB |  00m00s
[103/155] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |   3.8 MiB/s |  70.7 KiB |  00m00s
[104/155] libstdc++-0:15.0.1-0.3.fc42.x 100% |  24.9 MiB/s | 816.6 KiB |  00m00s
[105/155] pkgconf-0:2.3.0-1.fc42.x86_64 100% |   2.5 MiB/s |  45.2 KiB |  00m00s
[106/155] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 895.1 KiB/s |  14.3 KiB |  00m00s
[107/155] libpkgconf-0:2.3.0-1.fc42.x86 100% |   2.2 MiB/s |  38.5 KiB |  00m00s
[108/155] pcre2-syntax-0:10.44-1.fc41.1 100% |   8.1 MiB/s | 149.9 KiB |  00m00s
[109/155] authselect-0:1.5.0-8.fc42.x86 100% |   6.9 MiB/s | 141.2 KiB |  00m00s
[110/155] gdbm-1:1.23-7.fc41.x86_64     100% |   7.6 MiB/s | 147.2 KiB |  00m00s
[111/155] gdbm-libs-1:1.23-7.fc41.x86_6 100% |   3.1 MiB/s |  56.3 KiB |  00m00s
[112/155] libnsl2-0:2.0.1-2.fc41.x86_64 100% |   1.7 MiB/s |  29.6 KiB |  00m00s
[113/155] libtirpc-0:1.3.6-1.rc3.fc42.x 100% |   4.9 MiB/s |  89.7 KiB |  00m00s
[114/155] libpwquality-0:1.4.5-11.fc41. 100% |   5.6 MiB/s | 108.2 KiB |  00m00s
[115/155] crypto-policies-0:20241128-1. 100% |   3.6 MiB/s |  73.7 KiB |  00m00s
[116/155] ncurses-base-0:6.5-2.20240629 100% |   3.1 MiB/s |  63.8 KiB |  00m00s
[117/155] ca-certificates-0:2024.2.69_v 100% |  30.8 MiB/s | 944.9 KiB |  00m00s
[118/155] libcom_err-0:1.47.2-2.fc42.x8 100% |   1.5 MiB/s |  25.6 KiB |  00m00s
[119/155] cracklib-0:2.9.11-6.fc41.x86_ 100% |   4.7 MiB/s |  81.7 KiB |  00m00s
[120/155] krb5-libs-0:1.21.3-3.fc42.x86 100% |  26.4 MiB/s | 756.3 KiB |  00m00s
[121/155] libxml2-0:2.12.9-1.fc42.x86_6 100% |  33.8 MiB/s | 657.6 KiB |  00m00s
[122/155] libzstd-0:1.5.6-2.fc41.x86_64 100% |  13.8 MiB/s | 310.3 KiB |  00m00s
[123/155] keyutils-libs-0:1.6.3-4.fc41. 100% |   1.7 MiB/s |  31.6 KiB |  00m00s
[124/155] libverto-0:0.3.2-9.fc41.x86_6 100% |   1.2 MiB/s |  20.7 KiB |  00m00s
[125/155] elfutils-debuginfod-client-0: 100% |   2.3 MiB/s |  43.9 KiB |  00m00s
[126/155] elfutils-libs-0:0.192-7.fc42. 100% |  12.3 MiB/s | 251.9 KiB |  00m00s
[127/155] libffi-0:3.4.6-3.fc42.x86_64  100% |   2.3 MiB/s |  40.0 KiB |  00m00s
[128/155] p11-kit-0:0.25.5-4.fc42.x86_6 100% |  21.2 MiB/s | 478.3 KiB |  00m00s
[129/155] p11-kit-trust-0:0.25.5-4.fc42 100% |   6.2 MiB/s | 133.2 KiB |  00m00s
[130/155] alternatives-0:1.31-2.fc42.x8 100% |   2.3 MiB/s |  39.6 KiB |  00m00s
[131/155] jansson-0:2.14-1.fc42.x86_64  100% |   2.6 MiB/s |  45.3 KiB |  00m00s
[132/155] lua-libs-0:5.4.7-1.fc42.x86_6 100% |   6.1 MiB/s | 132.1 KiB |  00m00s
[133/155] rpm-sequoia-0:1.7.0-3.fc42.x8 100% |  26.9 MiB/s | 826.0 KiB |  00m00s
[134/155] libgomp-0:15.0.1-0.3.fc42.x86 100% |  15.5 MiB/s | 333.4 KiB |  00m00s
[135/155] sqlite-libs-0:3.47.2-1.fc42.x 100% |  25.3 MiB/s | 699.8 KiB |  00m00s
[136/155] libtasn1-0:4.19.0-9.fc41.x86_ 100% |   3.8 MiB/s |  74.2 KiB |  00m00s
[137/155] elfutils-default-yama-scope-0 100% | 779.1 KiB/s |  12.5 KiB |  00m00s
[138/155] json-c-0:0.18-1.fc42.x86_64   100% |   2.6 MiB/s |  44.4 KiB |  00m00s
[139/155] fedora-release-0:42-0.13.noar 100% | 817.4 KiB/s |  13.1 KiB |  00m00s
[140/155] fedora-release-identity-basic 100% | 816.8 KiB/s |  13.9 KiB |  00m00s
[141/155] libcurl-0:8.11.1-2.fc42.x86_6 100% |  15.8 MiB/s | 356.7 KiB |  00m00s
[142/155] xxhash-libs-0:0.8.3-1.fc42.x8 100% |   1.8 MiB/s |  35.9 KiB |  00m00s
[143/155] libbrotli-0:1.1.0-5.fc41.x86_ 100% |  15.8 MiB/s | 340.5 KiB |  00m00s
[144/155] libidn2-0:2.3.7-2.fc41.x86_64 100% |   5.2 MiB/s | 112.6 KiB |  00m00s
[145/155] libnghttp2-0:1.64.0-1.fc42.x8 100% |   4.0 MiB/s |  77.4 KiB |  00m00s
[146/155] gdb-minimal-0:15.2-6.fc42.x86 100% |  62.2 MiB/s |   4.0 MiB |  00m00s
[147/155] libpsl-0:0.21.5-4.fc41.x86_64 100% |   3.5 MiB/s |  64.1 KiB |  00m00s
[148/155] libssh-0:0.11.1-1.fc42.x86_64 100% |  11.3 MiB/s | 231.9 KiB |  00m00s
[149/155] openldap-0:2.6.9-1.fc42.x86_6 100% |  11.4 MiB/s | 244.3 KiB |  00m00s
[150/155] cyrus-sasl-lib-0:2.1.28-28.fc 100% |  25.7 MiB/s | 762.7 KiB |  00m00s
[151/155] libevent-0:2.1.12-14.fc41.x86 100% |  11.4 MiB/s | 257.5 KiB |  00m00s
[152/155] libtool-ltdl-0:2.5.4-3.fc42.x 100% |   2.0 MiB/s |  34.2 KiB |  00m00s
[153/155] libssh-config-0:0.11.1-1.fc42 100% | 586.6 KiB/s |   9.4 KiB |  00m00s
[154/155] publicsuffix-list-dafsa-0:202 100% |   3.3 MiB/s |  58.3 KiB |  00m00s
[155/155] libunistring-0:1.1-8.fc41.x86 100% |  19.0 MiB/s | 544.8 KiB |  00m00s
--------------------------------------------------------------------------------
[155/155] Total                         100% |  39.7 MiB/s |  50.9 MiB |  00m01s
Running transaction
[  1/157] Verify package files          100% | 748.0   B/s | 155.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-34.fc42.x86_64
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-34.fc42.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root/var/cache/d
[  2/157] Prepare transaction           100% |   1.8 KiB/s | 155.0   B |  00m00s
[  3/157] Installing libgcc-0:15.0.1-0. 100% | 131.2 MiB/s | 268.6 KiB |  00m00s
[  4/157] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  5/157] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  6/157] Installing fedora-release-ide 100% | 953.1 KiB/s | 976.0   B |  00m00s
[  7/157] Installing fedora-gpg-keys-0: 100% |  15.5 MiB/s | 174.8 KiB |  00m00s
[  8/157] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/157] Installing fedora-repos-0:42- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[ 10/157] Installing fedora-release-com 100% |  11.8 MiB/s |  24.1 KiB |  00m00s
[ 11/157] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/157] Installing setup-0:2.15.0-9.f 100% |  47.3 MiB/s | 726.5 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/157] Installing filesystem-0:3.18- 100% |   1.4 MiB/s | 212.4 KiB |  00m00s
[ 14/157] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/157] Installing ncurses-base-0:6.5 100% |  31.2 MiB/s | 351.7 KiB |  00m00s
[ 16/157] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 17/157] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB |  00m00s
[ 18/157] Installing glibc-0:2.40.9000- 100% | 152.0 MiB/s |   6.7 MiB |  00m00s
[ 19/157] Installing bash-0:5.2.37-1.fc 100% | 185.7 MiB/s |   8.2 MiB |  00m00s
[ 20/157] Installing glibc-common-0:2.4 100% |  54.8 MiB/s |   1.0 MiB |  00m00s
[ 21/157] Installing glibc-gconv-extra- 100% | 132.4 MiB/s |   8.1 MiB |  00m00s
[ 22/157] Installing zlib-ng-compat-0:2 100% | 136.1 MiB/s | 139.3 KiB |  00m00s
[ 23/157] Installing xz-libs-1:5.6.3-2. 100% | 214.3 MiB/s | 219.5 KiB |  00m00s
[ 24/157] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 25/157] Installing readline-0:8.2-11. 100% | 241.8 MiB/s | 495.3 KiB |  00m00s
[ 26/157] Installing libuuid-0:2.40.4-1 100% |  39.9 MiB/s |  40.9 KiB |  00m00s
[ 27/157] Installing popt-0:1.19-7.fc41 100% |  28.0 MiB/s | 143.5 KiB |  00m00s
[ 28/157] Installing libblkid-0:2.40.4- 100% | 256.0 MiB/s | 262.2 KiB |  00m00s
[ 29/157] Installing libattr-0:2.5.2-4. 100% |  28.8 MiB/s |  29.5 KiB |  00m00s
[ 30/157] Installing libacl-0:2.3.2-2.f 100% |  39.8 MiB/s |  40.7 KiB |  00m00s
[ 31/157] Installing libxcrypt-0:4.4.38 100% | 133.1 MiB/s | 272.6 KiB |  00m00s
[ 32/157] Installing gmp-1:6.3.0-2.fc41 100% | 198.6 MiB/s | 813.7 KiB |  00m00s
[ 33/157] Installing libstdc++-0:15.0.1 100% | 250.5 MiB/s |   2.8 MiB |  00m00s
[ 34/157] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB |  00m00s
[ 35/157] Installing elfutils-libelf-0: 100% | 233.4 MiB/s |   1.2 MiB |  00m00s
[ 36/157] Installing libeconf-0:0.7.5-1 100% |  66.8 MiB/s |  68.4 KiB |  00m00s
[ 37/157] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 38/157] Installing dwz-0:0.15-8.fc42. 100% |  22.6 MiB/s | 300.6 KiB |  00m00s
[ 39/157] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB |  00m00s
[ 40/157] Installing gawk-0:5.3.0-4.fc4 100% |  78.7 MiB/s |   1.7 MiB |  00m00s
[ 41/157] Installing unzip-0:6.0-65.fc4 100% |  28.0 MiB/s | 401.7 KiB |  00m00s
[ 42/157] Installing file-libs-0:5.45-8 100% | 451.8 MiB/s |   9.9 MiB |  00m00s
[ 43/157] Installing file-0:5.45-8.fc42 100% |   3.1 MiB/s | 105.2 KiB |  00m00s
[ 44/157] Installing crypto-policies-0: 100% |  13.3 MiB/s | 163.7 KiB |  00m00s
[ 45/157] Installing libcap-ng-0:0.8.5- 100% |  69.4 MiB/s |  71.0 KiB |  00m00s
[ 46/157] Installing audit-libs-0:4.0.3 100% | 172.6 MiB/s | 353.4 KiB |  00m00s
[ 47/157] Installing pam-libs-0:1.7.0-3 100% |  69.2 MiB/s | 141.8 KiB |  00m00s
[ 48/157] Installing libcap-0:2.71-2.fc 100% |  13.9 MiB/s | 228.3 KiB |  00m00s
[ 49/157] Installing systemd-libs-0:257 100% | 201.9 MiB/s |   2.2 MiB |  00m00s
[ 50/157] Installing libsmartcols-0:2.4 100% |  86.5 MiB/s | 177.2 KiB |  00m00s
[ 51/157] Installing libsepol-0:3.8-0.r 100% | 198.5 MiB/s | 813.3 KiB |  00m00s
[ 52/157] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 53/157] Installing libcom_err-0:1.47. 100% |  65.5 MiB/s |  67.1 KiB |  00m00s
[ 54/157] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 55/157] Installing alternatives-0:1.3 100% |   4.1 MiB/s |  66.4 KiB |  00m00s
[ 56/157] Installing lua-libs-0:5.4.7-1 100% | 139.7 MiB/s | 286.2 KiB |  00m00s
[ 57/157] Installing libtasn1-0:4.19.0- 100% |  86.7 MiB/s | 177.5 KiB |  00m00s
[ 58/157] Installing p11-kit-0:0.25.5-4 100% |  63.3 MiB/s |   2.2 MiB |  00m00s
[ 59/157] Installing libunistring-0:1.1 100% | 192.3 MiB/s |   1.7 MiB |  00m00s
[ 60/157] Installing libidn2-0:2.3.7-2. 100% |  54.5 MiB/s | 335.1 KiB |  00m00s
[ 61/157] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 62/157] Installing p11-kit-trust-0:0. 100% |   9.9 MiB/s | 405.5 KiB |  00m00s
[ 63/157] Installing zstd-0:1.5.6-2.fc4 100% |  67.7 MiB/s |   1.7 MiB |  00m00s
[ 64/157] Installing zip-0:3.0-42.fc42. 100% |  32.5 MiB/s | 699.8 KiB |  00m00s
[ 65/157] Installing gdbm-1:1.23-7.fc41 100% |  21.7 MiB/s | 465.8 KiB |  00m00s
[ 66/157] Installing cyrus-sasl-lib-0:2 100% |  91.6 MiB/s |   2.3 MiB |  00m00s
[ 67/157] Installing libfdisk-0:2.40.4- 100% | 118.9 MiB/s | 365.4 KiB |  00m00s
[ 68/157] Installing bzip2-0:1.0.8-19.f 100% |   5.8 MiB/s | 100.2 KiB |  00m00s
[ 69/157] Installing libxml2-0:2.12.9-1 100% |  93.7 MiB/s |   1.7 MiB |  00m00s
[ 70/157] Installing add-determinism-0: 100% | 118.4 MiB/s |   2.4 MiB |  00m00s
[ 71/157] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 72/157] Installing sqlite-libs-0:3.47 100% | 239.0 MiB/s |   1.4 MiB |  00m00s
[ 73/157] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[ 74/157] Installing ed-0:1.21-1.fc42.x 100% |  11.1 MiB/s | 147.1 KiB |  00m00s
[ 75/157] Installing elfutils-default-y 100% | 102.1 KiB/s |   2.0 KiB |  00m00s
[ 76/157] Installing elfutils-libs-0:0. 100% | 108.2 MiB/s | 664.7 KiB |  00m00s
[ 77/157] Installing cpio-0:2.15-2.fc41 100% |  50.0 MiB/s |   1.1 MiB |  00m00s
[ 78/157] Installing diffutils-0:3.10-8 100% |  72.3 MiB/s |   1.6 MiB |  00m00s
[ 79/157] Installing libpkgconf-0:2.3.0 100% |  77.5 MiB/s |  79.3 KiB |  00m00s
[ 80/157] Installing pkgconf-0:2.3.0-1. 100% |   6.8 MiB/s |  91.1 KiB |  00m00s
[ 81/157] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[ 82/157] Installing libverto-0:0.3.2-9 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[ 83/157] Installing jansson-0:2.14-1.f 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[ 84/157] Installing libgomp-0:15.0.1-0 100% | 259.3 MiB/s | 531.0 KiB |  00m00s
[ 85/157] Installing json-c-0:0.18-1.fc 100% |  82.6 MiB/s |  84.6 KiB |  00m00s
[ 86/157] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[ 87/157] Installing libbrotli-0:1.1.0- 100% | 205.0 MiB/s | 839.9 KiB |  00m00s
[ 88/157] Installing libnghttp2-0:1.64. 100% | 171.5 MiB/s | 175.6 KiB |  00m00s
[ 89/157] Installing libtool-ltdl-0:2.5 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[ 90/157] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 91/157] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB |  00m00s
[ 92/157] Installing libselinux-0:3.8-0 100% |  94.2 MiB/s | 192.9 KiB |  00m00s
[ 93/157] Installing sed-0:4.9-3.fc41.x 100% |  44.7 MiB/s | 869.7 KiB |  00m00s
[ 94/157] Installing grep-0:3.11-9.fc41 100% |  50.2 MiB/s |   1.0 MiB |  00m00s
[ 95/157] Installing findutils-1:4.10.0 100% |  80.8 MiB/s |   1.9 MiB |  00m00s
[ 96/157] Installing xz-1:5.6.3-2.fc42. 100% |  56.2 MiB/s |   1.2 MiB |  00m00s
[ 97/157] Installing libmount-0:2.40.4- 100% | 115.2 MiB/s | 354.0 KiB |  00m00s
[ 98/157] Installing util-linux-core-0: 100% |  53.2 MiB/s |   1.5 MiB |  00m00s
[ 99/157] Installing patch-0:2.7.6-25.f 100% |  18.7 MiB/s | 268.2 KiB |  00m00s
[100/157] Installing tar-2:1.35-4.fc41. 100% | 113.8 MiB/s |   3.0 MiB |  00m00s
[101/157] Installing libsemanage-0:3.8- 100% | 100.0 MiB/s | 307.1 KiB |  00m00s
[102/157] Installing shadow-utils-2:4.1 100% |  86.1 MiB/s |   4.0 MiB |  00m00s
[103/157] Installing pkgconf-m4-0:2.3.0 100% |  14.5 MiB/s |  14.8 KiB |  00m00s
[104/157] Installing pkgconf-pkg-config 100% | 147.8 KiB/s |   1.8 KiB |  00m00s
[105/157] Installing coreutils-common-0 100% | 243.3 MiB/s |  11.2 MiB |  00m00s
[106/157] Installing openssl-libs-1:3.2 100% | 284.8 MiB/s |   7.7 MiB |  00m00s
[107/157] Installing coreutils-0:9.5-12 100% |  95.8 MiB/s |   5.6 MiB |  00m00s
[108/157] Installing ca-certificates-0: 100% |   1.0 MiB/s |   2.4 MiB |  00m02s
[109/157] Installing krb5-libs-0:1.21.3 100% | 153.7 MiB/s |   2.3 MiB |  00m00s
[110/157] Installing libarchive-0:3.7.7 100% | 182.5 MiB/s | 934.2 KiB |  00m00s
[111/157] Installing libtirpc-0:1.3.6-1 100% |  97.4 MiB/s | 199.4 KiB |  00m00s
[112/157] Installing gzip-0:1.13-2.fc41 100% |  24.1 MiB/s | 394.6 KiB |  00m00s
[113/157] Installing authselect-libs-0: 100% |  58.4 MiB/s | 837.2 KiB |  00m00s
[114/157] Installing cracklib-0:2.9.11- 100% |  24.4 MiB/s | 250.3 KiB |  00m00s
[115/157] Installing libpwquality-0:1.4 100% |  21.0 MiB/s | 430.1 KiB |  00m00s
[116/157] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[117/157] Installing pam-0:1.7.0-3.fc42 100% |  63.1 MiB/s |   1.9 MiB |  00m00s
[118/157] Installing libssh-0:0.11.1-1. 100% | 139.6 MiB/s | 571.7 KiB |  00m00s
[119/157] Installing rpm-sequoia-0:1.7. 100% | 258.2 MiB/s |   2.3 MiB |  00m00s
[120/157] Installing rpm-libs-0:4.20.0- 100% | 173.8 MiB/s | 711.9 KiB |  00m00s
[121/157] Installing rpm-build-libs-0:4 100% | 100.0 MiB/s | 204.9 KiB |  00m00s
[122/157] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB |  00m00s
[123/157] Installing openldap-0:2.6.9-1 100% | 127.4 MiB/s | 652.3 KiB |  00m00s
[124/157] Installing libcurl-0:8.11.1-2 100% | 199.8 MiB/s | 818.4 KiB |  00m00s
[125/157] Installing elfutils-debuginfo 100% |   5.8 MiB/s |  83.8 KiB |  00m00s
[126/157] Installing binutils-0:2.43.50 100% | 203.2 MiB/s |  25.8 MiB |  00m00s
[127/157] Installing elfutils-0:0.192-7 100% | 110.2 MiB/s |   2.6 MiB |  00m00s
[128/157] Installing gdb-minimal-0:15.2 100% | 227.2 MiB/s |  12.7 MiB |  00m00s
[129/157] Installing debugedit-0:5.1-2. 100% |  14.2 MiB/s | 203.0 KiB |  00m00s
[130/157] Installing curl-0:8.11.1-2.fc 100% |  11.7 MiB/s | 454.5 KiB |  00m00s
[131/157] Installing rpm-0:4.20.0-6.fc4 100% |  58.2 MiB/s |   2.5 MiB |  00m00s
[132/157] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[133/157] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[134/157] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[135/157] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[136/157] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[137/157] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[138/157] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[139/157] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[140/157] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[141/157] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[142/157] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[143/157] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[144/157] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[145/157] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[146/157] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[147/157] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[148/157] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[149/157] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[150/157] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[151/157] Installing redhat-rpm-config- 100% |  47.2 MiB/s | 193.5 KiB |  00m00s
[152/157] Installing rpm-build-0:4.20.0 100% |  11.2 MiB/s | 194.5 KiB |  00m00s
[153/157] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[154/157] Installing util-linux-0:2.40. 100% |  60.1 MiB/s |   3.6 MiB |  00m00s
[155/157] Installing authselect-0:1.5.0 100% |   9.3 MiB/s | 161.9 KiB |  00m00s
[156/157] Installing which-0:2.21-42.fc 100% |   5.7 MiB/s |  82.4 KiB |  00m00s
[157/157] Installing info-0:7.2-1.fc42. 100% | 112.2 KiB/s | 355.6 KiB |  00m03s
Warning: skipped OpenPGP checks for 155 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.5.0-1.fc42.x86_64
alternatives-1.31-2.fc42.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.3-1.fc42.x86_64
authselect-1.5.0-8.fc42.x86_64
authselect-libs-1.5.0-8.fc42.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.x86_64
binutils-2.43.50-9.fc42.x86_64
build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch
coreutils-9.5-12.fc42.x86_64
coreutils-common-9.5-12.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-2.fc42.x86_64
cyrus-sasl-lib-2.1.28-28.fc42.x86_64
debugedit-5.1-2.fc42.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc42.x86_64
ed-1.21-1.fc42.x86_64
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.x86_64
elfutils-debuginfod-client-0.192-7.fc42.x86_64
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.x86_64
elfutils-libs-0.192-7.fc42.x86_64
fedora-gpg-keys-42-0.4.noarch
fedora-release-42-0.13.noarch
fedora-release-common-42-0.13.noarch
fedora-release-identity-basic-42-0.13.noarch
fedora-repos-42-0.4.noarch
fedora-repos-rawhide-42-0.4.noarch
file-5.45-8.fc42.x86_64
file-libs-5.45-8.fc42.x86_64
filesystem-3.18-34.fc42.x86_64
filesystem-srpm-macros-3.18-34.fc42.noarch
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-19.fc42.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-6.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-28.fc42.x86_64
glibc-common-2.40.9000-28.fc42.x86_64
glibc-gconv-extra-2.40.9000-28.fc42.x86_64
glibc-minimal-langpack-2.40.9000-28.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.2-1.fc42.x86_64
jansson-2.14-1.fc42.x86_64
json-c-0.18-1.fc42.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-3.fc42.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.7-1.fc42.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.4-1.fc42.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.71-2.fc42.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.2-2.fc42.x86_64
libcurl-8.11.1-2.fc42.x86_64
libeconf-0.7.5-1.fc42.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.4-1.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-15.0.1-0.3.fc42.x86_64
libgomp-15.0.1-0.3.fc42.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.4-1.fc42.x86_64
libnghttp2-1.64.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.8-0.rc3.1.fc42.2.x86_64
libsemanage-3.8-0.rc3.1.fc42.x86_64
libsepol-3.8-0.rc3.1.fc42.x86_64
libsmartcols-2.40.4-1.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-15.0.1-0.3.fc42.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.6-1.rc3.fc42.x86_64
libtool-ltdl-2.5.4-3.fc42.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.4-1.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.38-2.fc42.x86_64
libxml2-2.12.9-1.fc42.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.7-1.fc42.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.9-1.fc42.x86_64
openssl-libs-3.2.2-11.fc42.x86_64
p11-kit-0.25.5-4.fc42.x86_64
p11-kit-trust-0.25.5-4.fc42.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.x86_64
pam-libs-1.7.0-3.fc42.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.4-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-300-1.fc42.noarch
rpm-4.20.0-6.fc42.x86_64
rpm-build-4.20.0-6.fc42.x86_64
rpm-build-libs-4.20.0-6.fc42.x86_64
rpm-libs-4.20.0-6.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-9.fc42.noarch
shadow-utils-4.17.0-3.fc42.x86_64
sqlite-libs-3.47.2-1.fc42.x86_64
systemd-libs-257.2-7.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-65.fc42.x86_64
util-linux-2.40.4-1.fc42.x86_64
util-linux-core-2.40.4-1.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.3-1.fc42.x86_64
xz-5.6.3-2.fc42.x86_64
xz-libs-5.6.3-2.fc42.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.x86_64
zlib-ng-compat-2.2.3-1.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1736985600
Wrote: /builddir/build/SRPMS/apbs-3.0.0-26.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rl4kzohe/apbs/apbs.spec) Config(child) 0 minutes 28 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/apbs-3.0.0-26.fc42.src.rpm)  Config(fedora-rawhide-x86_64)
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.20.0-1.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  python3-dnf-4.22.0-1.fc41.noarch
  python3-dnf-plugins-core-4.10.0-1.fc41.noarch
  dnf5-5.2.8.1-3.fc41.x86_64
  dnf5-plugins-5.2.8.1-3.fc41.x86_64
Finish: chroot init
Start: build phase for apbs-3.0.0-26.fc42.src.rpm
Start: build setup for apbs-3.0.0-26.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1736985600
Wrote: /builddir/build/SRPMS/apbs-3.0.0-26.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% | 383.9 KiB/s |  27.6 KiB |  00m00s
 Copr repository                        100% |  50.2 KiB/s |   2.2 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  73.6 KiB/s |   3.8 KiB |  00m00s
 fedora                                 100% | 346.2 KiB/s | 312.3 KiB |  00m01s
Repositories loaded.
Package                               Arch   Version                     Repository                                                         Size
Installing:
 chrpath                              x86_64 0.16-24.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.6 KiB
 cmake                                x86_64 3.31.4-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.9 MiB
 doxygen                              x86_64 2:1.13.2-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 MiB
 gcc-c++                              x86_64 15.0.1-0.3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.8 MiB
 graphviz                             x86_64 12.2.1-2.fc42               copr_base                                                      20.8 MiB
 make                                 x86_64 1:4.4.1-9.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 maloc-devel                          x86_64 1.5-31.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 python3-devel                        x86_64 3.13.1-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 python3-numpy                        x86_64 1:2.2.1-2.fc42              copr_base                                                      40.8 MiB
 python3-sphinx                       noarch 1:8.1.3-1.fc42              copr_base                                                      11.1 MiB
 swig                                 x86_64 4.3.0-3.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 texlive-adjustbox                    noarch 11:svn64967-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.1 KiB
 texlive-collection-latexrecommended  noarch 11:svn65512-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 texlive-etoc                         noarch 11:svn66299-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  87.0 KiB
 texlive-hanging                      noarch 11:svn15878.1.2b-74.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.0 KiB
 texlive-multirow                     noarch 11:svn58396-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.8 KiB
 texlive-newunicodechar               noarch 11:svn47382-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.7 KiB
 texlive-sectsty                      noarch 11:svn15878.2.0.2-74.fc42   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.8 KiB
 texlive-stackengine                  noarch 11:svn60019-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.7 KiB
 texlive-tocloft                      noarch 11:svn53364-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.9 KiB
 texlive-ulem                         noarch 11:svn53365-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.3 KiB
 texlive-wasy                         noarch 11:svn53533-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.7 KiB
 texlive-wasysym                      noarch 11:svn54080-74.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.9 KiB
 zlib-ng-compat-devel                 x86_64 2.2.3-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB
Installing dependencies:
 abattis-cantarell-vf-fonts           noarch 0.301-13.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB
 adobe-mappings-cmap                  noarch 20231115-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.2 MiB
 adobe-mappings-cmap-deprecated       noarch 20231115-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582.1 KiB
 adobe-mappings-pdf                   noarch 20190401-8.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.4 MiB
 annobin-docs                         noarch 12.80-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.6 KiB
 annobin-plugin-gcc                   x86_64 12.80-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 992.8 KiB
 avahi-libs                           x86_64 0.8-30.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 174.2 KiB
 biber                                noarch 2.19-6.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 cairo                                x86_64 1.18.2-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 cairo-gobject                        x86_64 1.18.2-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.1 KiB
 cmake-data                           noarch 3.31.4-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.5 MiB
 cmake-filesystem                     x86_64 3.31.4-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cmake-rpm-macros                     noarch 3.31.4-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.5 KiB
 cpp                                  x86_64 15.0.1-0.3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.6 MiB
 cups-filesystem                      noarch 1:2.4.11-9.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cups-libs                            x86_64 1:2.4.11-9.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.9 KiB
 dbus-libs                            x86_64 1:1.16.0-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 339.7 KiB
 default-fonts-core-sans              noarch 4.2-2.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 emacs-filesystem                     noarch 1:30.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                                x86_64 2.6.4-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB
 flexiblas                            x86_64 3.4.4-6.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 flexiblas-netlib                     x86_64 3.4.4-6.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.6 MiB
 flexiblas-openblas-openmp            x86_64 3.4.4-6.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  42.3 KiB
 fontconfig                           x86_64 2.15.0-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 791.9 KiB
 fonts-filesystem                     noarch 1:2.0.5-19.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 freetype                             x86_64 2.13.3-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 850.5 KiB
 fribidi                              x86_64 1.0.16-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.5 KiB
 gcc                                  x86_64 15.0.1-0.3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110.1 MiB
 gcc-plugin-annobin                   x86_64 15.0.1-0.3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.6 KiB
 gd                                   x86_64 2.3.3-17.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.7 KiB
 gdk-pixbuf2                          x86_64 2.42.12-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 ghostscript                          x86_64 10.04.0-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.9 KiB
 ghostscript-tools-fonts              noarch 10.04.0-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 KiB
 ghostscript-tools-printing           noarch 10.04.0-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.5 KiB
 glib2                                x86_64 2.83.0-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.6 MiB
 glibc-devel                          x86_64 2.40.9000-28.fc42           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 gnupg2                               x86_64 2.4.5-5.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 MiB
 gnutls                               x86_64 3.8.8-1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.2 MiB
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 urw-base35-nimbus-roman-fonts        noarch 20200910-23.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 urw-base35-nimbus-sans-fonts         noarch 20200910-23.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 urw-base35-p052-fonts                noarch 20200910-23.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.9 KiB
 urw-base35-z003-fonts                noarch 20200910-23.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB
 vim-filesystem                       noarch 2:9.1.1000-1.fc42           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 xapian-core-libs                     x86_64 1.4.26-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 xml-common                           noarch 0.6.3-65.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xpdf-libs                            x86_64 1:4.05-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 zziplib                              x86_64 0.13.74-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233.7 KiB

Transaction Summary:
 Installing:       682 packages

Total size of inbound packages is 418 MiB. Need to download 418 MiB.
After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B).
[  1/682] chrpath-0:0.16-24.fc41.x86_64 100% | 406.8 KiB/s |  30.1 KiB |  00m00s
[  2/682] doxygen-2:1.13.2-1.fc42.x86_6 100% |  25.9 MiB/s |   5.3 MiB |  00m00s
[  3/682] graphviz-0:12.2.1-2.fc42.x86_ 100% |  33.4 MiB/s |   4.6 MiB |  00m00s
[  4/682] cmake-0:3.31.4-1.fc42.x86_64  100% |  27.2 MiB/s |   9.9 MiB |  00m00s
[  5/682] make-1:4.4.1-9.fc42.x86_64    100% |  12.9 MiB/s | 579.3 KiB |  00m00s
[  6/682] maloc-devel-0:1.5-31.fc41.x86 100% |  29.5 MiB/s |   1.3 MiB |  00m00s
[  7/682] python3-devel-0:3.13.1-2.fc42 100% |  12.5 MiB/s | 357.9 KiB |  00m00s
[  8/682] python3-numpy-1:2.2.1-2.fc42. 100% |  46.1 MiB/s |   7.7 MiB |  00m00s
[  9/682] python3-sphinx-1:8.1.3-1.fc42 100% |  15.5 MiB/s |   2.6 MiB |  00m00s
[ 10/682] texlive-collection-latexrecom 100% | 471.0 KiB/s |   9.9 KiB |  00m00s
[ 11/682] texlive-adjustbox-11:svn64967 100% |   1.4 MiB/s |  29.2 KiB |  00m00s
[ 12/682] swig-0:4.3.0-3.fc42.x86_64    100% |  23.1 MiB/s |   1.6 MiB |  00m00s
[ 13/682] texlive-etoc-11:svn66299-74.f 100% |   1.6 MiB/s |  27.3 KiB |  00m00s
[ 14/682] texlive-hanging-11:svn15878.1 100% | 754.9 KiB/s |  16.6 KiB |  00m00s
[ 15/682] texlive-multirow-11:svn58396- 100% | 706.1 KiB/s |  14.8 KiB |  00m00s
[ 16/682] texlive-newunicodechar-11:svn 100% |   1.0 MiB/s |  16.7 KiB |  00m00s
[ 17/682] texlive-sectsty-11:svn15878.2 100% | 917.4 KiB/s |  16.5 KiB |  00m00s
[ 18/682] texlive-stackengine-11:svn600 100% |   1.1 MiB/s |  19.8 KiB |  00m00s
[ 19/682] texlive-tocloft-11:svn53364-7 100% |   1.3 MiB/s |  20.5 KiB |  00m00s
[ 20/682] gcc-c++-0:15.0.1-0.3.fc42.x86 100% |  22.5 MiB/s |  14.7 MiB |  00m01s
[ 21/682] texlive-ulem-11:svn53365-74.f 100% | 574.6 KiB/s |  14.9 KiB |  00m00s
[ 22/682] texlive-wasy-11:svn53533-74.f 100% |   1.5 MiB/s |  37.2 KiB |  00m00s
[ 23/682] texlive-wasysym-11:svn54080-7 100% | 930.0 KiB/s |  15.8 KiB |  00m00s
[ 24/682] zlib-ng-compat-devel-0:2.2.3- 100% |   2.1 MiB/s |  38.3 KiB |  00m00s
[ 25/682] libstdc++-devel-0:15.0.1-0.3. 100% |  25.9 MiB/s |   2.7 MiB |  00m00s
[ 26/682] cmake-filesystem-0:3.31.4-1.f 100% | 847.7 KiB/s |  17.8 KiB |  00m00s
[ 27/682] texlive-base-11:20230311-87.f 100% |  25.3 MiB/s |   2.6 MiB |  00m00s
[ 28/682] texlive-kpathsea-11:svn66209- 100% |  22.0 MiB/s |   1.1 MiB |  00m00s
[ 29/682] texlive-etoolbox-11:svn56554- 100% |   1.2 MiB/s |  23.5 KiB |  00m00s
[ 30/682] texlive-listofitems-11:svn519 100% |  18.3 MiB/s | 804.4 KiB |  00m00s
[ 31/682] texlive-lib-11:20230311-87.fc 100% |  15.6 MiB/s | 463.8 KiB |  00m00s
[ 32/682] texlive-texlive-scripts-11:sv 100% |   5.4 MiB/s | 111.3 KiB |  00m00s
[ 33/682] texlive-etex-pkg-11:svn41784- 100% | 761.6 KiB/s |  14.5 KiB |  00m00s
[ 34/682] texlive-tools-11:svn64892-74. 100% |   3.1 MiB/s |  64.1 KiB |  00m00s
[ 35/682] texlive-anysize-11:svn15878.0 100% | 516.3 KiB/s |  10.3 KiB |  00m00s
[ 36/682] cpp-0:15.0.1-0.3.fc42.x86_64  100% |  26.2 MiB/s |  12.5 MiB |  00m00s
[ 37/682] texlive-attachfile2-11:svn579 100% |  12.5 MiB/s | 446.8 KiB |  00m00s
[ 38/682] texlive-beamer-11:svn65984-74 100% |   9.1 MiB/s | 204.2 KiB |  00m00s
[ 39/682] texlive-booktabs-11:svn53402- 100% | 863.0 KiB/s |  15.5 KiB |  00m00s
[ 40/682] texlive-breqn-11:svn60881-74. 100% |   2.3 MiB/s |  40.4 KiB |  00m00s
[ 41/682] texlive-caption-11:svn66580-7 100% |   4.5 MiB/s |  79.1 KiB |  00m00s
[ 42/682] texlive-cite-11:svn36428.5.5- 100% |   1.6 MiB/s |  29.0 KiB |  00m00s
[ 43/682] texlive-cmap-11:svn57640-74.f 100% |   1.0 MiB/s |  19.3 KiB |  00m00s
[ 44/682] texlive-collection-latex-11:s 100% | 533.3 KiB/s |   9.6 KiB |  00m00s
[ 45/682] texlive-crop-11:svn55424-74.f 100% | 921.4 KiB/s |  16.6 KiB |  00m00s
[ 46/682] texlive-ctable-11:svn38672-74 100% | 917.7 KiB/s |  15.6 KiB |  00m00s
[ 47/682] texlive-eso-pic-11:svn56658-7 100% | 944.2 KiB/s |  17.0 KiB |  00m00s
[ 48/682] texlive-euenc-11:svn19795.0.1 100% |   1.1 MiB/s |  19.9 KiB |  00m00s
[ 49/682] texlive-euler-11:svn42428-74. 100% | 612.9 KiB/s |  15.3 KiB |  00m00s
[ 50/682] texlive-everysel-11:svn57489- 100% |  14.1 MiB/s | 446.3 KiB |  00m00s
[ 51/682] texlive-everyshi-11:svn57001- 100% |   7.1 MiB/s | 144.8 KiB |  00m00s
[ 52/682] texlive-extsizes-11:svn17263. 100% |   1.4 MiB/s |  24.9 KiB |  00m00s
[ 53/682] texlive-fancybox-11:svn18304. 100% | 897.8 KiB/s |  20.7 KiB |  00m00s
[ 54/682] texlive-fancyref-11:svn15878. 100% | 990.7 KiB/s |  16.8 KiB |  00m00s
[ 55/682] texlive-fancyvrb-11:svn65585- 100% |   1.4 MiB/s |  24.2 KiB |  00m00s
[ 56/682] texlive-filehook-11:svn64822- 100% |   1.0 MiB/s |  20.6 KiB |  00m00s
[ 57/682] texlive-float-11:svn15878.1.3 100% | 857.1 KiB/s |  14.6 KiB |  00m00s
[ 58/682] texlive-fontspec-11:svn63386- 100% |   2.3 MiB/s |  42.5 KiB |  00m00s
[ 59/682] texlive-footnotehyper-11:svn6 100% |   1.0 MiB/s |  18.2 KiB |  00m00s
[ 60/682] texlive-fp-11:svn49719-74.fc4 100% |   1.9 MiB/s |  33.7 KiB |  00m00s
[ 61/682] texlive-grffile-11:svn52756-7 100% |  11.7 MiB/s | 358.0 KiB |  00m00s
[ 62/682] texlive-hologo-11:svn61719-74 100% |  17.3 MiB/s | 584.2 KiB |  00m00s
[ 63/682] texlive-index-11:svn24099.4.1 100% |   1.1 MiB/s |  20.5 KiB |  00m00s
[ 64/682] texlive-infwarerr-11:svn53023 100% |  11.4 MiB/s | 292.9 KiB |  00m00s
[ 65/682] texlive-jknapltx-11:svn19440. 100% | 884.6 KiB/s |  24.8 KiB |  00m00s
[ 66/682] texlive-l3experimental-11:svn 100% |   1.7 MiB/s |  41.1 KiB |  00m00s
[ 67/682] texlive-latexbug-11:svn63596- 100% |  10.5 MiB/s | 235.5 KiB |  00m00s
[ 68/682] gcc-0:15.0.1-0.3.fc42.x86_64  100% |  41.6 MiB/s |  38.2 MiB |  00m01s
[ 69/682] texlive-lineno-11:svn65586-74 100% |   1.2 MiB/s |  73.5 KiB |  00m00s
[ 70/682] texlive-listings-11:svn66222- 100% |   5.7 MiB/s | 164.8 KiB |  00m00s
[ 71/682] texlive-mathspec-11:svn42773- 100% | 911.1 KiB/s |  21.9 KiB |  00m00s
[ 72/682] texlive-mathtools-11:svn63767 100% |   1.7 MiB/s |  35.6 KiB |  00m00s
[ 73/682] texlive-mdwtools-11:svn15878. 100% |   1.8 MiB/s |  33.5 KiB |  00m00s
[ 74/682] texlive-lwarp-11:svn66259-87. 100% |  31.3 MiB/s |   3.4 MiB |  00m00s
[ 75/682] texlive-memoir-11:svn65040-74 100% |   3.9 MiB/s |  91.9 KiB |  00m00s
[ 76/682] texlive-metalogo-11:svn18611. 100% | 780.8 KiB/s |  14.1 KiB |  00m00s
[ 77/682] texlive-koma-script-11:svn646 100% |  24.3 MiB/s |   6.3 MiB |  00m00s
[ 78/682] texlive-microtype-11:svn66587 100% |   3.6 MiB/s |  74.6 KiB |  00m00s
[ 79/682] texlive-ms-11:svn57473-74.fc4 100% | 888.2 KiB/s |  15.1 KiB |  00m00s
[ 80/682] texlive-newfloat-11:svn52906- 100% |   6.4 MiB/s | 117.6 KiB |  00m00s
[ 81/682] texlive-ntgclass-11:svn65522- 100% |   1.7 MiB/s |  32.1 KiB |  00m00s
[ 82/682] texlive-parskip-11:svn58358-7 100% | 664.0 KiB/s |  14.6 KiB |  00m00s
[ 83/682] texlive-pdfcolfoot-11:svn6551 100% |  10.3 MiB/s | 317.1 KiB |  00m00s
[ 84/682] texlive-pdflscape-11:svn64851 100% |  10.5 MiB/s | 321.9 KiB |  00m00s
[ 85/682] texlive-pdfpages-11:svn65319- 100% |   1.4 MiB/s |  29.8 KiB |  00m00s
[ 86/682] texlive-pdftexcmds-11:svn5577 100% |  13.6 MiB/s | 388.6 KiB |  00m00s
[ 87/682] texlive-polyglossia-11:svn657 100% |   8.1 MiB/s | 174.1 KiB |  00m00s
[ 88/682] texlive-psfrag-11:svn15878.3. 100% | 776.4 KiB/s |  13.2 KiB |  00m00s
[ 89/682] texlive-rcs-11:svn15878.0-74. 100% | 952.1 KiB/s |  25.7 KiB |  00m00s
[ 90/682] texlive-ragged2e-11:svn66152- 100% |  14.7 MiB/s | 679.4 KiB |  00m00s
[ 91/682] texlive-sansmath-11:svn17997. 100% | 719.2 KiB/s |  12.2 KiB |  00m00s
[ 92/682] texlive-section-11:svn20180.0 100% |   1.0 MiB/s |  21.4 KiB |  00m00s
[ 93/682] texlive-seminar-11:svn59801-7 100% |   2.4 MiB/s |  45.8 KiB |  00m00s
[ 94/682] texlive-sepnum-11:svn20186.2. 100% | 762.3 KiB/s |  14.5 KiB |  00m00s
[ 95/682] texlive-setspace-11:svn65206- 100% | 832.5 KiB/s |  15.8 KiB |  00m00s
[ 96/682] texlive-subfig-11:svn15878.1. 100% |   1.1 MiB/s |  19.2 KiB |  00m00s
[ 97/682] texlive-textcase-11:svn63868- 100% | 761.9 KiB/s |  13.7 KiB |  00m00s
[ 98/682] texlive-thumbpdf-11:svn62518- 100% |   2.1 MiB/s |  40.2 KiB |  00m00s
[ 99/682] texlive-translator-11:svn5941 100% |  12.1 MiB/s | 273.4 KiB |  00m00s
[100/682] texlive-typehtml-11:svn17134. 100% | 981.3 KiB/s |  18.6 KiB |  00m00s
[101/682] texlive-ucharcat-11:svn38907- 100% | 593.2 KiB/s |  13.0 KiB |  00m00s
[102/682] texlive-pdfmanagement-testpha 100% |  36.2 MiB/s |   8.3 MiB |  00m00s
[103/682] texlive-underscore-11:svn1826 100% | 716.2 KiB/s |  16.5 KiB |  00m00s
[104/682] texlive-unicode-math-11:svn61 100% |   2.4 MiB/s |  61.1 KiB |  00m00s
[105/682] texlive-xcolor-11:svn63563-74 100% |   1.7 MiB/s |  30.1 KiB |  00m00s
[106/682] texlive-xkeyval-11:svn63616-7 100% |   1.4 MiB/s |  24.9 KiB |  00m00s
[107/682] texlive-xltxtra-11:svn56594-7 100% | 854.6 KiB/s |  14.5 KiB |  00m00s
[108/682] texlive-xunicode-11:svn30466. 100% |   2.4 MiB/s |  42.0 KiB |  00m00s
[109/682] texlive-ae-11:svn15878.1.4-74 100% |   4.6 MiB/s |  94.1 KiB |  00m00s
[110/682] texlive-amsmath-11:svn63514-7 100% |   2.5 MiB/s |  44.3 KiB |  00m00s
[111/682] texlive-amscls-11:svn55378-74 100% |  24.2 MiB/s |   1.1 MiB |  00m00s
[112/682] texlive-atbegshi-11:svn53051- 100% |  11.3 MiB/s | 406.5 KiB |  00m00s
[113/682] texlive-atveryend-11:svn53108 100% |  13.4 MiB/s | 382.9 KiB |  00m00s
[114/682] texlive-babel-english-11:svn4 100% |   1.1 MiB/s |  18.4 KiB |  00m00s
[115/682] texlive-auxhook-11:svn53173-7 100% |  13.0 MiB/s | 292.6 KiB |  00m00s
[116/682] texlive-babel-11:svn65823-74. 100% |  13.4 MiB/s | 358.1 KiB |  00m00s
[117/682] texlive-babelbib-11:svn57349- 100% |   2.1 MiB/s |  43.8 KiB |  00m00s
[118/682] texlive-bigintcalc-11:svn5317 100% |  14.6 MiB/s | 463.7 KiB |  00m00s
[119/682] texlive-bookmark-11:svn56885- 100% |  16.1 MiB/s | 477.7 KiB |  00m00s
[120/682] texlive-bitset-11:svn53837-74 100% |  16.8 MiB/s | 618.0 KiB |  00m00s
[121/682] texlive-carlisle-11:svn59577- 100% |   1.0 MiB/s |  21.1 KiB |  00m00s
[122/682] texlive-collection-basic-11:s 100% | 487.5 KiB/s |   9.3 KiB |  00m00s
[123/682] texlive-colortbl-11:svn64015- 100% | 906.6 KiB/s |  15.4 KiB |  00m00s
[124/682] texlive-epstopdf-pkg-11:svn53 100% |  12.6 MiB/s | 361.9 KiB |  00m00s
[125/682] texlive-fancyhdr-11:svn64977- 100% |   1.0 MiB/s |  17.4 KiB |  00m00s
[126/682] texlive-etexcmds-11:svn53171- 100% |  11.1 MiB/s | 307.8 KiB |  00m00s
[127/682] texlive-firstaid-11:svn64892- 100% |  12.1 MiB/s | 272.6 KiB |  00m00s
[128/682] texlive-fix2col-11:svn38770-7 100% | 680.3 KiB/s |  14.3 KiB |  00m00s
[129/682] texlive-geometry-11:svn61719- 100% |   1.2 MiB/s |  20.8 KiB |  00m00s
[130/682] texlive-graphics-cfg-11:svn41 100% | 649.3 KiB/s |  10.4 KiB |  00m00s
[131/682] texlive-gettitlestring-11:svn 100% |  12.7 MiB/s | 324.9 KiB |  00m00s
[132/682] texlive-graphics-11:svn66204- 100% |   1.6 MiB/s |  33.3 KiB |  00m00s
[133/682] texlive-grfext-11:svn53024-74 100% |  10.6 MiB/s | 315.2 KiB |  00m00s
[134/682] texlive-hopatch-11:svn65491-7 100% |  11.4 MiB/s | 326.2 KiB |  00m00s
[135/682] texlive-hycolor-11:svn53584-7 100% |  13.8 MiB/s | 381.7 KiB |  00m00s
[136/682] texlive-hyperref-11:svn65758- 100% |   4.5 MiB/s | 111.1 KiB |  00m00s
[137/682] texlive-kvdefinekeys-11:svn53 100% |  14.1 MiB/s | 303.8 KiB |  00m00s
[138/682] texlive-intcalc-11:svn53168-7 100% |  15.5 MiB/s | 429.9 KiB |  00m00s
[139/682] texlive-kvoptions-11:svn63622 100% |  15.5 MiB/s | 491.3 KiB |  00m00s
[140/682] texlive-kvsetkeys-11:svn64632 100% |  12.5 MiB/s | 396.2 KiB |  00m00s
[141/682] texlive-l3backend-11:svn65573 100% |  22.4 MiB/s | 894.9 KiB |  00m00s
[142/682] texlive-l3packages-11:svn6572 100% |   1.8 MiB/s |  38.5 KiB |  00m00s
[143/682] texlive-l3kernel-11:svn66094- 100% |   8.3 MiB/s | 195.2 KiB |  00m00s
[144/682] texlive-latex-fonts-11:svn288 100% |   2.2 MiB/s |  38.1 KiB |  00m00s
[145/682] texlive-latexconfig-11:svn535 100% | 574.0 KiB/s |  13.2 KiB |  00m00s
[146/682] texlive-letltxmacro-11:svn530 100% |  14.5 MiB/s | 297.7 KiB |  00m00s
[147/682] texlive-latex-lab-11:svn64892 100% |  24.6 MiB/s |   1.8 MiB |  00m00s
[148/682] texlive-ltxcmds-11:svn56421-7 100% |  11.8 MiB/s | 397.8 KiB |  00m00s
[149/682] texlive-ltxmisc-11:svn21927.0 100% | 984.8 KiB/s |  25.6 KiB |  00m00s
[150/682] texlive-mfnfss-11:svn46036-74 100% | 645.7 KiB/s |  14.9 KiB |  00m00s
[151/682] texlive-mptopdf-11:svn65952-8 100% |   2.7 MiB/s |  51.8 KiB |  00m00s
[152/682] texlive-natbib-11:svn20668.8. 100% |   1.6 MiB/s |  28.8 KiB |  00m00s
[153/682] texlive-pagesel-11:svn56105-7 100% |  12.7 MiB/s | 337.9 KiB |  00m00s
[154/682] texlive-pdfescape-11:svn53082 100% |  12.2 MiB/s | 350.7 KiB |  00m00s
[155/682] texlive-pslatex-11:svn57434-7 100% |   1.2 MiB/s |  20.1 KiB |  00m00s
[156/682] texlive-psnfss-11:svn54694-74 100% |   2.2 MiB/s |  39.7 KiB |  00m00s
[157/682] texlive-pspicture-11:svn15878 100% | 772.1 KiB/s |  13.9 KiB |  00m00s
[158/682] texlive-refcount-11:svn53164- 100% |  14.8 MiB/s | 332.7 KiB |  00m00s
[159/682] texlive-rerunfilecheck-11:svn 100% |  13.2 MiB/s | 338.5 KiB |  00m00s
[160/682] texlive-stringenc-11:svn52982 100% |  17.3 MiB/s | 692.1 KiB |  00m00s
[161/682] texlive-uniquecounter-11:svn5 100% |  11.2 MiB/s | 298.1 KiB |  00m00s
[162/682] texlive-oberdiek-11:svn65521- 100% |  30.8 MiB/s |   7.7 MiB |  00m00s
[163/682] texlive-url-11:svn32528.3.4-7 100% | 697.7 KiB/s |  17.4 KiB |  00m00s
[164/682] texlive-bibtex-11:svn66186-87 100% |  13.5 MiB/s | 443.0 KiB |  00m00s
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[166/682] texlive-colorprofiles-11:svn4 100% |   6.4 MiB/s | 143.8 KiB |  00m00s
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[342/682] texlive-lualibs-11:svn64615-7 100% |   3.2 MiB/s | 150.5 KiB |  00m00s
[343/682] texlive-minitoc-11:svn61719-7 100% |   4.5 MiB/s |  83.5 KiB |  00m00s
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[345/682] texlive-finstrut-11:svn21719. 100% |   1.0 MiB/s |  17.8 KiB |  00m00s
[346/682] texlive-ltabptch-11:svn17533. 100% | 856.3 KiB/s |  16.3 KiB |  00m00s
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[348/682] texlive-csquotes-11:svn64389- 100% |   1.1 MiB/s |  33.4 KiB |  00m00s
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[353/682] texlive-mparhack-11:svn59066- 100% | 925.7 KiB/s |  15.7 KiB |  00m00s
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[355/682] texlive-rsfs-11:svn15878.0-74 100% |   3.6 MiB/s |  67.1 KiB |  00m00s
[356/682] texlive-hobsub-11:svn52810-74 100% |   2.9 MiB/s |  75.3 KiB |  00m00s
[357/682] texlive-kastrup-11:svn15878.0 100% | 614.1 KiB/s |  10.4 KiB |  00m00s
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[359/682] texlive-epstopdf-11:svn66461- 100% |   1.7 MiB/s |  29.3 KiB |  00m00s
[360/682] texlive-xetex-11:svn66203-87. 100% |   9.0 MiB/s |   1.2 MiB |  00m00s
[361/682] texlive-transparent-11:svn648 100% |   5.9 MiB/s | 283.4 KiB |  00m00s
[362/682] texlive-changepage-11:svn1587 100% | 922.7 KiB/s |  17.5 KiB |  00m00s
[363/682] texlive-paralist-11:svn43021- 100% | 813.8 KiB/s |  15.5 KiB |  00m00s
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[366/682] texlive-titlesec-11:svn59845- 100% |   1.6 MiB/s |  31.9 KiB |  00m00s
[367/682] texlive-xifthen-11:svn38929-7 100% | 785.2 KiB/s |  14.1 KiB |  00m00s
[368/682] python-pip-wheel-0:24.3.1-1.f 100% |  14.7 MiB/s |   1.2 MiB |  00m00s
[369/682] libb2-0:0.98.1-12.fc41.x86_64 100% |   1.3 MiB/s |  25.7 KiB |  00m00s
[370/682] mpdecimal-0:2.5.1-16.fc41.x86 100% |   3.5 MiB/s |  89.0 KiB |  00m00s
[371/682] tzdata-0:2024b-1.fc42.noarch  100% |   8.2 MiB/s | 428.6 KiB |  00m00s
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[373/682] gpgmepp-0:1.24.0-1.fc42.x86_6 100% |  11.5 MiB/s | 141.9 KiB |  00m00s
[374/682] texlive-lm-11:svn65956-74.fc4 100% |  10.6 MiB/s |  11.9 MiB |  00m01s
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[378/682] nspr-0:4.36.0-2.fc42.x86_64   100% |   5.0 MiB/s | 127.2 KiB |  00m00s
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[380/682] nss-0:3.107.0-1.fc42.x86_64   100% |  12.3 MiB/s | 656.8 KiB |  00m00s
[381/682] perl-mro-0:1.29-513.fc42.x86_ 100% |   1.7 MiB/s |  29.0 KiB |  00m00s
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[384/682] perl-I18N-Langinfo-0:0.24-513 100% |   1.3 MiB/s |  24.9 KiB |  00m00s
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[392/682] perl-Pod-Perldoc-0:3.28.01-51 100% |   2.9 MiB/s |  80.5 KiB |  00m00s
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[395/682] perl-IPC-Open3-0:1.22-513.fc4 100% |   1.1 MiB/s |  21.9 KiB |  00m00s
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[425/682] libICE-0:1.1.2-1.fc42.x86_64  100% |   4.1 MiB/s |  75.6 KiB |  00m00s
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[428/682] libXext-0:1.3.6-2.fc41.x86_64 100% |   2.0 MiB/s |  39.1 KiB |  00m00s
[429/682] libX11-common-0:1.8.10-2.fc42 100% |   7.9 MiB/s | 144.8 KiB |  00m00s
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[431/682] libxcb-0:1.17.0-3.fc42.x86_64 100% |   7.2 MiB/s | 235.9 KiB |  00m00s
[432/682] texlive-cm-super-11:svn15878. 100% |  26.7 MiB/s |  61.6 MiB |  00m02s
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[451/682] emacs-filesystem-1:30.0-3.fc4 100% | 396.8 KiB/s |   7.1 KiB |  00m00s
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[455/682] gpgme-0:1.24.0-1.fc42.x86_64  100% |  10.7 MiB/s | 218.2 KiB |  00m00s
[456/682] libassuan-0:2.5.7-2.fc41.x86_ 100% |   3.9 MiB/s |  67.1 KiB |  00m00s
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[458/682] texlive-ifmtarg-11:svn47544-7 100% | 731.7 KiB/s |  12.4 KiB |  00m00s
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[460/682] teckit-0:2.5.12-3.fc41.x86_64 100% |  11.2 MiB/s | 355.4 KiB |  00m00s
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[680/682] cmake-rpm-macros-0:3.31.4-1.f 100% |   1.0 MiB/s |  17.1 KiB |  00m00s
[681/682] annobin-docs-0:12.80-2.fc42.n 100% |   5.0 MiB/s |  91.6 KiB |  00m00s
[682/682] annobin-plugin-gcc-0:12.80-2. 100% |  26.5 MiB/s | 978.3 KiB |  00m00s
--------------------------------------------------------------------------------
[682/682] Total                         100% |  43.0 MiB/s | 418.2 MiB |  00m10s
Running transaction
[  1/684] Verify package files          100% | 459.0   B/s | 682.0   B |  00m01s
>>> Running pre-transaction scriptlet: texlive-base-11:20230311-87.fc42.x86_64
>>> Finished pre-transaction scriptlet: texlive-base-11:20230311-87.fc42.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root/var/cache/d
[  2/684] Prepare transaction           100% |   1.5 KiB/s | 682.0   B |  00m00s
[  3/684] Installing texlive-base-11:20 100% | 327.9 MiB/s |  19.0 MiB |  00m00s
[  4/684] Installing texlive-lib-11:202 100% | 151.5 MiB/s |   1.1 MiB |  00m00s
[  5/684] Installing libpng-2:1.6.44-1. 100% | 120.6 MiB/s | 247.0 KiB |  00m00s
[  6/684] Installing nspr-0:4.36.0-2.fc 100% | 101.5 MiB/s | 311.8 KiB |  00m00s
[  7/684] Installing expat-0:2.6.4-1.fc 100% |  17.6 MiB/s | 287.6 KiB |  00m00s
[  8/684] Installing libgpg-error-0:1.5 100% |  43.6 MiB/s | 893.1 KiB |  00m00s
[  9/684] Installing fonts-filesystem-1 100% | 769.5 KiB/s | 788.0   B |  00m00s
[ 10/684] Installing urw-base35-fonts-c 100% |  37.5 MiB/s |  38.4 KiB |  00m00s
[ 11/684] Installing libjpeg-turbo-0:3. 100% | 256.7 MiB/s | 788.7 KiB |  00m00s
[ 12/684] Installing nss-util-0:3.107.0 100% |  98.2 MiB/s | 201.2 KiB |  00m00s
[ 13/684] Installing libwebp-0:1.5.0-1. 100% | 159.9 MiB/s | 818.6 KiB |  00m00s
[ 14/684] Installing libassuan-0:2.5.7- 100% |  80.9 MiB/s | 165.6 KiB |  00m00s
[ 15/684] Installing python-rpm-macros- 100% |  22.3 MiB/s |  22.8 KiB |  00m00s
[ 16/684] Installing libpaper-1:2.1.1-7 100% |  49.3 MiB/s |  50.5 KiB |  00m00s
[ 17/684] Installing libmpc-0:1.3.1-6.f 100% |  81.1 MiB/s | 166.2 KiB |  00m00s
[ 18/684] Installing cmake-filesystem-0 100% |   2.5 MiB/s |   7.6 KiB |  00m00s
[ 19/684] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 20/684] Installing libgfortran-0:15.0 100% | 253.6 MiB/s |   3.3 MiB |  00m00s
[ 21/684] Installing graphite2-0:1.3.14 100% |  12.6 MiB/s | 194.1 KiB |  00m00s
[ 22/684] Installing libICE-0:1.1.2-1.f 100% |  94.5 MiB/s | 193.6 KiB |  00m00s
[ 23/684] Installing adobe-mappings-cma 100% | 249.0 MiB/s |  15.2 MiB |  00m00s
[ 24/684] Installing openjpeg-0:2.5.3-4 100% | 147.6 MiB/s | 453.3 KiB |  00m00s
[ 25/684] Installing lcms2-0:2.16-4.fc4 100% | 138.8 MiB/s | 426.5 KiB |  00m00s
[ 26/684] Installing zziplib-0:0.13.74- 100% |  58.2 MiB/s | 238.6 KiB |  00m00s
[ 27/684] Installing make-1:4.4.1-9.fc4 100% |  78.3 MiB/s |   1.8 MiB |  00m00s
[ 28/684] Installing adobe-mappings-cma 100% | 142.9 MiB/s | 585.2 KiB |  00m00s
[ 29/684] Installing libSM-0:1.2.5-1.fc 100% |  98.6 MiB/s | 100.9 KiB |  00m00s
[ 30/684] Installing pyproject-rpm-macr 100% |  56.2 MiB/s | 115.0 KiB |  00m00s
[ 31/684] Installing cpp-0:15.0.1-0.3.f 100% | 260.9 MiB/s |  37.6 MiB |  00m00s
[ 32/684] Installing nss-softokn-freebl 100% | 162.7 MiB/s | 833.0 KiB |  00m00s
[ 33/684] Installing nss-softokn-0:3.10 100% | 229.5 MiB/s |   1.8 MiB |  00m00s
[ 34/684] Installing nss-sysinit-0:3.10 100% |   1.4 MiB/s |  22.0 KiB |  00m00s
[ 35/684] Installing nss-0:3.107.0-1.fc 100% |  91.8 MiB/s |   1.8 MiB |  00m00s
[ 36/684] Installing urw-base35-bookman 100% |  62.0 MiB/s |   1.4 MiB |  00m00s
[ 37/684] Installing urw-base35-c059-fo 100% |  82.1 MiB/s |   1.4 MiB |  00m00s
[ 38/684] Installing urw-base35-d050000 100% |   6.4 MiB/s |  85.4 KiB |  00m00s
[ 39/684] Installing urw-base35-gothic- 100% |  68.4 MiB/s |   1.2 MiB |  00m00s
[ 40/684] Installing urw-base35-nimbus- 100% |  58.4 MiB/s |   1.1 MiB |  00m00s
[ 41/684] Installing urw-base35-nimbus- 100% |  75.9 MiB/s |   1.4 MiB |  00m00s
[ 42/684] Installing urw-base35-nimbus- 100% | 108.8 MiB/s |   2.4 MiB |  00m00s
[ 43/684] Installing urw-base35-p052-fo 100% |  82.6 MiB/s |   1.5 MiB |  00m00s
[ 44/684] Installing urw-base35-standar 100% |   4.6 MiB/s |  66.0 KiB |  00m00s
[ 45/684] Installing urw-base35-z003-fo 100% |  23.9 MiB/s | 391.8 KiB |  00m00s
[ 46/684] Installing urw-base35-fonts-0 100% |   5.5 MiB/s |   5.6 KiB |  00m00s
[ 47/684] Installing google-droid-sans- 100% | 250.4 MiB/s |   6.3 MiB |  00m00s
[ 48/684] Installing abattis-cantarell- 100% |  94.9 MiB/s | 194.4 KiB |  00m00s
[ 49/684] Installing libgcrypt-0:1.11.0 100% | 221.4 MiB/s |   1.6 MiB |  00m00s
[ 50/684] Installing libksba-0:1.6.7-2. 100% | 130.5 MiB/s | 401.0 KiB |  00m00s
[ 51/684] Installing graphviz-libs-0:12 100% | 173.4 MiB/s |   1.2 MiB |  00m00s
[ 52/684] Installing teckit-0:2.5.12-3. 100% |  89.0 MiB/s |   2.0 MiB |  00m00s
[ 53/684] Installing annobin-docs-0:12. 100% |  97.4 MiB/s |  99.7 KiB |  00m00s
[ 54/684] Installing xpdf-libs-1:4.05-5 100% | 246.6 MiB/s |   1.7 MiB |  00m00s
[ 55/684] Installing libxslt-0:1.1.42-3 100% |  27.9 MiB/s | 486.1 KiB |  00m00s
[ 56/684] Installing libusb1-0:1.0.27-6 100% |   4.9 MiB/s | 169.3 KiB |  00m00s
[ 57/684] Installing tpm2-tss-0:4.1.3-5 100% | 143.8 MiB/s |   1.6 MiB |  00m00s
[ 58/684] Installing npth-0:1.8-1.fc42. 100% |  53.4 MiB/s |  54.7 KiB |  00m00s
[ 59/684] Installing nettle-0:3.10-3.fc 100% | 155.5 MiB/s | 796.1 KiB |  00m00s
[ 60/684] Installing gnutls-0:3.8.8-1.f 100% | 216.6 MiB/s |   3.2 MiB |  00m00s
[ 61/684] Installing glib2-0:2.83.0-3.f 100% | 198.2 MiB/s |  14.7 MiB |  00m00s
[ 62/684] Installing harfbuzz-0:10.2.0- 100% | 222.8 MiB/s |   2.7 MiB |  00m00s
[ 63/684] Installing freetype-0:2.13.3- 100% | 166.4 MiB/s | 852.2 KiB |  00m00s
[ 64/684] Installing shared-mime-info-0 100% |  65.5 MiB/s |   2.6 MiB |  00m00s
[ 65/684] Installing gdk-pixbuf2-0:2.42 100% |  72.2 MiB/s |   2.5 MiB |  00m00s
[ 66/684] Installing gnupg2-0:2.4.5-5.f 100% | 169.6 MiB/s |   9.5 MiB |  00m00s
[ 67/684] Installing gpgme-0:1.24.0-1.f 100% |  33.8 MiB/s | 589.3 KiB |  00m00s
[ 68/684] Installing gpgmepp-0:1.24.0-1 100% | 139.9 MiB/s | 429.7 KiB |  00m00s
[ 69/684] Installing google-noto-fonts- 100% |  18.1 MiB/s |  18.5 KiB |  00m00s
[ 70/684] Installing google-noto-sans-v 100% | 231.9 MiB/s |   1.4 MiB |  00m00s
[ 71/684] Installing default-fonts-core 100% |   8.9 MiB/s |  18.2 KiB |  00m00s
[ 72/684] Installing libvmaf-0:3.0.0-2. 100% | 201.3 MiB/s | 824.4 KiB |  00m00s
[ 73/684] Installing libaom-0:3.9.0-3.f 100% | 281.2 MiB/s |   5.1 MiB |  00m00s
[ 74/684] Installing svt-av1-libs-0:2.1 100% | 310.2 MiB/s |   7.1 MiB |  00m00s
[ 75/684] Installing rav1e-libs-0:0.7.1 100% | 273.9 MiB/s |   3.0 MiB |  00m00s
[ 76/684] Installing libdav1d-0:1.5.0-1 100% | 276.4 MiB/s |   1.7 MiB |  00m00s
[ 77/684] Installing libavif-0:1.0.4-7. 100% | 180.8 MiB/s | 185.1 KiB |  00m00s
[ 78/684] Installing libXau-0:1.0.12-1. 100% |  75.6 MiB/s |  77.4 KiB |  00m00s
[ 79/684] Installing libxcb-0:1.17.0-3. 100% | 132.0 MiB/s |   1.2 MiB |  00m00s
[ 80/684] Installing openblas-0:0.3.28- 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 81/684] Installing openblas-openmp-0: 100% | 441.4 MiB/s |  39.3 MiB |  00m00s
[ 82/684] Installing mailcap-0:2.1.54-7 100% |  85.0 MiB/s |  87.1 KiB |  00m00s
[ 83/684] Installing ncurses-0:6.5-2.20 100% |  34.4 MiB/s | 633.9 KiB |  00m00s
[ 84/684] Installing libicu-0:76.1-2.fc 100% | 299.5 MiB/s |  36.2 MiB |  00m00s
[ 85/684] Installing dbus-libs-1:1.16.0 100% | 166.3 MiB/s | 340.6 KiB |  00m00s
[ 86/684] Installing avahi-libs-0:0.8-3 100% |  57.6 MiB/s | 176.8 KiB |  00m00s
[ 87/684] Installing pixman-0:0.44.2-1. 100% | 216.7 MiB/s | 665.6 KiB |  00m00s
[ 88/684] Installing vim-filesystem-2:9 100% |   2.3 MiB/s |   4.7 KiB |  00m00s
[ 89/684] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
[ 90/684] Installing cups-filesystem-1: 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[ 91/684] Installing cups-libs-1:2.4.11 100% | 150.3 MiB/s | 615.5 KiB |  00m00s
[ 92/684] Installing libquadmath-0:15.0 100% | 156.6 MiB/s | 320.7 KiB |  00m00s
[ 93/684] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 94/684] Installing flexiblas-openblas 100% |  42.1 MiB/s |  43.1 KiB |  00m00s
[ 95/684] Installing flexiblas-netlib-0 100% | 173.4 MiB/s |  10.6 MiB |  00m00s
[ 96/684] Installing xml-common-0:0.6.3 100% |  26.4 MiB/s |  81.1 KiB |  00m00s
[ 97/684] Installing fontconfig-0:2.15. 100% | 644.8 KiB/s | 811.1 KiB |  00m01s
[ 98/684] Installing libimagequant-0:4. 100% | 108.8 MiB/s | 668.3 KiB |  00m00s
[ 99/684] Installing kernel-headers-0:6 100% | 103.8 MiB/s |   6.6 MiB |  00m00s
[100/684] Installing libxcrypt-devel-0: 100% |  10.8 MiB/s |  33.1 KiB |  00m00s
[101/684] Installing glibc-devel-0:2.40 100% |  77.7 MiB/s |   2.3 MiB |  00m00s
[102/684] Installing gcc-0:15.0.1-0.3.f 100% | 284.6 MiB/s | 110.1 MiB |  00m00s
[103/684] Installing netpbm-0:11.02.00- 100% | 141.4 MiB/s | 579.0 KiB |  00m00s
[104/684] Installing gts-0:0.7.6-49.201 100% |  32.1 MiB/s | 657.3 KiB |  00m00s
[105/684] Installing libX11-common-0:1. 100% |  62.5 MiB/s |   1.2 MiB |  00m00s
[106/684] Installing libX11-0:1.8.10-2. 100% | 214.2 MiB/s |   1.3 MiB |  00m00s
[107/684] Installing libXrender-0:0.9.1 100% |  48.8 MiB/s |  50.0 KiB |  00m00s
[108/684] Installing libXt-0:1.3.1-1.fc 100% | 141.3 MiB/s | 434.2 KiB |  00m00s
[109/684] Installing libXext-0:1.3.6-2. 100% |  89.2 MiB/s |  91.3 KiB |  00m00s
[110/684] Installing cairo-0:1.18.2-2.f 100% | 194.3 MiB/s |   1.7 MiB |  00m00s
[111/684] Installing libXpm-0:3.5.17-4. 100% |  73.2 MiB/s | 149.8 KiB |  00m00s
[112/684] Installing cairo-gobject-0:1. 100% |  34.1 MiB/s |  35.0 KiB |  00m00s
[113/684] Installing libXmu-0:1.2.1-2.f 100% | 189.0 MiB/s | 193.5 KiB |  00m00s
[114/684] Installing libXaw-0:1.0.16-2. 100% | 168.2 MiB/s | 516.7 KiB |  00m00s
[115/684] Installing libXi-0:1.8.2-1.fc 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[116/684] Installing libXft-0:2.3.8-7.f 100% |  81.1 MiB/s | 166.0 KiB |  00m00s
[117/684] Installing libijs-0:0.35-23.f 100% |  61.1 MiB/s |  62.6 KiB |  00m00s
[118/684] Installing jbig2dec-libs-0:0. 100% |  83.3 MiB/s | 170.6 KiB |  00m00s
[119/684] Installing adobe-mappings-pdf 100% | 258.6 MiB/s |   4.4 MiB |  00m00s
[120/684] Installing libdatrie-0:0.2.13 100% |  57.7 MiB/s |  59.0 KiB |  00m00s
[121/684] Installing libthai-0:0.1.29-9 100% | 191.7 MiB/s | 785.3 KiB |  00m00s
[122/684] Installing sombok-0:2.4.0-22. 100% |  65.3 MiB/s | 133.8 KiB |  00m00s
[123/684] Installing liblerc-0:4.0.0-7. 100% | 198.3 MiB/s | 609.0 KiB |  00m00s
[124/684] Installing jbigkit-libs-0:2.1 100% |  58.4 MiB/s | 119.6 KiB |  00m00s
[125/684] Installing libtiff-0:4.7.0-2. 100% | 121.5 MiB/s | 622.3 KiB |  00m00s
[126/684] Installing libgs-0:10.04.0-1. 100% | 335.3 MiB/s |  23.5 MiB |  00m00s
[127/684] Installing ghostscript-tools- 100% | 244.1 KiB/s |   3.4 KiB |  00m00s
[128/684] Installing ghostscript-tools- 100% | 361.6 KiB/s |   5.1 KiB |  00m00s
[129/684] Installing ghostscript-0:10.0 100% |   2.4 MiB/s |  39.4 KiB |  00m00s
[130/684] Installing gd-0:2.3.3-17.fc41 100% | 131.8 MiB/s | 404.8 KiB |  00m00s
[131/684] Installing fribidi-0:1.0.16-1 100% |  12.8 MiB/s | 197.0 KiB |  00m00s
[132/684] Installing pango-0:1.55.0-1.f 100% |  49.0 MiB/s |   1.0 MiB |  00m00s
[133/684] Installing rsvg-pixbuf-loader 100% | 111.1 MiB/s | 341.3 KiB |  00m00s
[134/684] Installing librsvg2-0:2.59.2- 100% | 258.1 MiB/s |   4.6 MiB |  00m00s
[135/684] Installing lasi-0:1.1.3-14.fc 100% |   7.6 MiB/s | 132.3 KiB |  00m00s
[136/684] Installing groff-base-0:1.23. 100% |  71.7 MiB/s |   3.9 MiB |  00m00s
[137/684] Installing perl-Digest-0:1.20 100% |  36.2 MiB/s |  37.1 KiB |  00m00s
[138/684] Installing perl-FileHandle-0: 100% |   9.5 MiB/s |   9.8 KiB |  00m00s
[139/684] Installing perl-B-0:1.89-513. 100% | 121.9 MiB/s | 499.4 KiB |  00m00s
[140/684] Installing perl-Digest-MD5-0: 100% |  60.2 MiB/s |  61.7 KiB |  00m00s
[141/684] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[142/684] Installing perl-Data-Dumper-0 100% |  55.5 MiB/s | 113.6 KiB |  00m00s
[143/684] Installing perl-libnet-0:3.15 100% |  72.0 MiB/s | 294.7 KiB |  00m00s
[144/684] Installing perl-IO-Socket-IP- 100% |  99.8 MiB/s | 102.2 KiB |  00m00s
[145/684] Installing perl-AutoLoader-0: 100% |  20.5 MiB/s |  20.9 KiB |  00m00s
[146/684] Installing perl-URI-0:5.31-1. 100% |  43.9 MiB/s | 269.6 KiB |  00m00s
[147/684] Installing perl-locale-0:1.12 100% |   0.0   B/s |   6.9 KiB |  00m00s
[148/684] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[149/684] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[150/684] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[151/684] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[152/684] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[153/684] Installing perl-Net-SSLeay-0: 100% | 123.9 MiB/s |   1.4 MiB |  00m00s
[154/684] Installing perl-IO-Socket-SSL 100% | 172.7 MiB/s | 707.4 KiB |  00m00s
[155/684] Installing perl-POSIX-0:2.20- 100% | 114.5 MiB/s | 234.5 KiB |  00m00s
[156/684] Installing perl-IPC-Open3-0:1 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[157/684] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[158/684] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.1 KiB |  00m00s
[159/684] Installing perl-Term-ANSIColo 100% |  96.9 MiB/s |  99.2 KiB |  00m00s
[160/684] Installing perl-Term-Cap-0:1. 100% |  29.9 MiB/s |  30.6 KiB |  00m00s
[161/684] Installing perl-Pod-Simple-1: 100% | 111.4 MiB/s | 570.5 KiB |  00m00s
[162/684] Installing perl-HTTP-Tiny-0:0 100% |  76.4 MiB/s | 156.4 KiB |  00m00s
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[164/684] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.6 KiB |  00m00s
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[166/684] Installing perl-File-stat-0:1 100% |  12.7 MiB/s |  13.1 KiB |  00m00s
[167/684] Installing perl-podlators-1:6 100% |  19.6 MiB/s | 321.4 KiB |  00m00s
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[169/684] Installing perl-Fcntl-0:1.18- 100% |  48.0 MiB/s |  49.1 KiB |  00m00s
[170/684] Installing perl-Text-ParseWor 100% |   2.8 MiB/s |  14.6 KiB |  00m00s
[171/684] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  12.9 KiB |  00m00s
[172/684] Installing perl-mro-0:1.29-51 100% |  44.6 MiB/s |  45.7 KiB |  00m00s
[173/684] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[174/684] Installing perl-IO-0:1.55-513 100% |  50.2 MiB/s | 154.2 KiB |  00m00s
[175/684] Installing perl-Pod-Usage-4:2 100% |   6.0 MiB/s |  86.3 KiB |  00m00s
[176/684] Installing perl-Errno-0:1.38- 100% |   0.0   B/s |   8.7 KiB |  00m00s
[177/684] Installing perl-Scalar-List-U 100% |  37.3 MiB/s | 152.6 KiB |  00m00s
[178/684] Installing perl-constant-0:1. 100% |  26.7 MiB/s |  27.4 KiB |  00m00s
[179/684] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[180/684] Installing perl-Getopt-Std-0: 100% |   0.0   B/s |  11.7 KiB |  00m00s
[181/684] Installing perl-MIME-Base64-0 100% |  47.2 MiB/s |  48.4 KiB |  00m00s
[182/684] Installing perl-parent-1:0.24 100% |  10.7 MiB/s |  11.0 KiB |  00m00s
[183/684] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
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[185/684] Installing perl-Storable-1:3. 100% | 114.3 MiB/s | 234.0 KiB |  00m00s
[186/684] Installing perl-Getopt-Long-1 100% |  71.9 MiB/s | 147.2 KiB |  00m00s
[187/684] Installing perl-Carp-0:1.54-5 100% |  46.6 MiB/s |  47.7 KiB |  00m00s
[188/684] Installing perl-Exporter-0:5. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[189/684] Installing perl-PathTools-0:3 100% |  60.1 MiB/s | 184.6 KiB |  00m00s
[190/684] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[191/684] Installing perl-Encode-4:3.21 100% | 138.8 MiB/s |   4.7 MiB |  00m00s
[192/684] Installing perl-libs-4:5.40.0 100% | 140.0 MiB/s |   9.9 MiB |  00m00s
[193/684] Installing perl-interpreter-4 100% |   8.6 MiB/s | 122.9 KiB |  00m00s
[194/684] Installing perl-File-Find-0:1 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[195/684] Installing perl-Try-Tiny-0:0. 100% |  34.7 MiB/s |  71.1 KiB |  00m00s
[196/684] Installing perl-subs-0:1.04-5 100% |   0.0   B/s |   2.5 KiB |  00m00s
[197/684] Installing perl-version-9:0.9 100% |  44.2 MiB/s | 135.6 KiB |  00m00s
[198/684] Installing perl-Module-Runtim 100% |  30.7 MiB/s |  31.5 KiB |  00m00s
[199/684] Installing perl-Dist-CheckCon 100% |  32.3 MiB/s |  33.1 KiB |  00m00s
[200/684] Installing perl-Module-Implem 100% |  25.5 MiB/s |  26.1 KiB |  00m00s
[201/684] Installing perl-Unicode-Norma 100% | 152.2 MiB/s | 467.5 KiB |  00m00s
[202/684] Installing perl-File-Copy-0:2 100% |   0.0   B/s |  20.2 KiB |  00m00s
[203/684] Installing perl-LWP-MediaType 100% |  78.6 MiB/s |  80.5 KiB |  00m00s
[204/684] Installing perl-Compress-Raw- 100% |  80.9 MiB/s | 165.6 KiB |  00m00s
[205/684] Installing perl-Clone-0:0.47- 100% |  37.3 MiB/s |  38.2 KiB |  00m00s
[206/684] Installing perl-Sys-Hostname- 100% |  19.9 MiB/s |  20.4 KiB |  00m00s
[207/684] Installing perl-Time-HiRes-4: 100% | 119.1 MiB/s | 121.9 KiB |  00m00s
[208/684] Installing perl-Data-Dump-0:1 100% |  51.0 MiB/s |  52.2 KiB |  00m00s
[209/684] Installing perl-Text-Unidecod 100% |  40.0 MiB/s | 491.8 KiB |  00m00s
[210/684] Installing perl-I18N-Langinfo 100% |  38.3 MiB/s |  39.3 KiB |  00m00s
[211/684] Installing perl-Encode-Locale 100% |  19.6 MiB/s |  20.1 KiB |  00m00s
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[213/684] Installing perl-TimeDate-1:2. 100% |  33.7 MiB/s | 103.7 KiB |  00m00s
[214/684] Installing perl-HTTP-Date-0:6 100% |  41.6 MiB/s |  42.6 KiB |  00m00s
[215/684] Installing perl-Text-Balanced 100% | 110.1 MiB/s | 112.7 KiB |  00m00s
[216/684] Installing perl-XML-Namespace 100% |  45.0 MiB/s |  46.1 KiB |  00m00s
[217/684] Installing perl-XML-SAX-Base- 100% | 170.4 MiB/s | 174.5 KiB |  00m00s
[218/684] Installing perl-Params-Util-0 100% |  27.9 MiB/s |  57.2 KiB |  00m00s
[219/684] Installing perl-Sub-Install-0 100% |  36.3 MiB/s |  37.2 KiB |  00m00s
[220/684] Installing perl-Devel-StackTr 100% |  49.4 MiB/s |  50.6 KiB |  00m00s
[221/684] Installing perl-Date-ISO8601- 100% |  24.9 MiB/s |  25.5 KiB |  00m00s
[222/684] Installing perl-Data-OptList- 100% |  51.0 MiB/s |  52.2 KiB |  00m00s
[223/684] Installing perl-Parse-RecDesc 100% | 104.6 MiB/s | 535.4 KiB |  00m00s
[224/684] Installing perl-File-Listing- 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[225/684] Installing perl-Mail-Sendmail 100% |  65.0 MiB/s |  66.5 KiB |  00m00s
[226/684] Installing perl-Text-BibTeX-0 100% |  25.6 MiB/s | 524.4 KiB |  00m00s
[227/684] Installing perl-Unicode-Colla 100% | 233.3 MiB/s |   4.2 MiB |  00m00s
[228/684] Installing perl-Unicode-UCD-0 100% | 200.2 MiB/s | 205.0 KiB |  00m00s
[229/684] Installing perl-List-SomeUtil 100% | 106.4 MiB/s | 109.0 KiB |  00m00s
[230/684] Installing perl-Params-Valida 100% |  76.3 MiB/s | 156.3 KiB |  00m00s
[231/684] Installing perl-Module-CoreLi 100% | 390.4 MiB/s |   1.2 MiB |  00m00s
[232/684] Installing perl-Module-Metada 100% |  67.4 MiB/s |  69.0 KiB |  00m00s
[233/684] Installing perl-Business-ISSN 100% |  21.6 MiB/s |  22.1 KiB |  00m00s
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[237/684] Installing perl-Digest-SHA-1: 100% |   7.8 MiB/s | 119.1 KiB |  00m00s
[238/684] Installing perl-Digest-HMAC-0 100% |  30.7 MiB/s |  31.5 KiB |  00m00s
[239/684] Installing perl-NTLM-0:1.09-3 100% |  31.9 MiB/s |  32.7 KiB |  00m00s
[240/684] Installing perl-Lingua-Transl 100% |  12.5 MiB/s | 179.3 KiB |  00m00s
[241/684] Installing perl-Pod-Html-0:1. 100% |   3.3 MiB/s |  43.8 KiB |  00m00s
[242/684] Installing perl-WWW-RobotRule 100% |  25.2 MiB/s |  25.8 KiB |  00m00s
[243/684] Installing perl-Filter-2:1.64 100% |  34.1 MiB/s | 174.6 KiB |  00m00s
[244/684] Installing perl-encoding-4:3. 100% | 146.9 MiB/s | 150.4 KiB |  00m00s
[245/684] Installing perl-open-0:1.13-5 100% |   0.0   B/s |  11.7 KiB |  00m00s
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[247/684] Installing perl-IO-Compress-0 100% |  49.1 MiB/s |   1.0 MiB |  00m00s
[248/684] Installing perl-Net-HTTP-0:6. 100% |  37.7 MiB/s |  77.2 KiB |  00m00s
[249/684] Installing perl-IO-HTML-0:1.0 100% |  45.7 MiB/s |  46.8 KiB |  00m00s
[250/684] Installing perl-HTTP-Message- 100% |  71.6 MiB/s | 219.9 KiB |  00m00s
[251/684] Installing perl-HTTP-Negotiat 100% |  28.0 MiB/s |  28.7 KiB |  00m00s
[252/684] Installing perl-HTTP-Cookies- 100% |  37.0 MiB/s |  75.7 KiB |  00m00s
[253/684] Installing perl-HTML-Tagset-0 100% |  19.2 MiB/s |  19.7 KiB |  00m00s
[254/684] Installing perl-HTML-Parser-0 100% |  70.3 MiB/s | 287.8 KiB |  00m00s
[255/684] Installing perl-libwww-perl-0 100% |  27.3 MiB/s | 530.3 KiB |  00m00s
[256/684] Installing perl-XML-Parser-0: 100% |  92.6 MiB/s | 663.7 KiB |  00m00s
[257/684] Installing perl-XML-XPath-0:1 100% |  12.1 MiB/s | 210.1 KiB |  00m00s
[258/684] Installing texlive-epstopdf-1 100% |   2.8 MiB/s |  40.6 KiB |  00m00s
[259/684] Installing texlive-epstopdf-p 100% | 189.4 MiB/s | 388.0 KiB |  00m00s
[260/684] Installing texlive-cm-11:svn5 100% |  84.0 MiB/s |   1.0 MiB |  00m00s
[261/684] Installing texlive-etex-11:sv 100% |  41.7 MiB/s |  42.7 KiB |  00m00s
[262/684] Installing texlive-hyph-utf8- 100% |  74.8 MiB/s |  76.6 KiB |  00m00s
[263/684] Installing texlive-hyphen-bas 100% |  64.3 MiB/s |  65.9 KiB |  00m00s
[264/684] Installing texlive-knuth-lib- 100% |  34.6 MiB/s | 106.3 KiB |  00m00s
[265/684] Installing texlive-plain-11:s 100% |  55.6 MiB/s | 113.8 KiB |  00m00s
[266/684] Installing texlive-tex-ini-fi 100% |   9.9 MiB/s |  10.1 KiB |  00m00s
[267/684] Installing texlive-unicode-da 100% | 307.1 MiB/s |   3.1 MiB |  00m00s
[268/684] Installing texlive-graphics-d 100% |  48.8 MiB/s |  99.9 KiB |  00m00s
[269/684] Installing texlive-texlive.in 100% |  53.0 MiB/s |   1.0 MiB |  00m00s
[270/684] Installing texlive-gsftopk-11 100% |   3.3 MiB/s |  47.0 KiB |  00m00s
[271/684] Installing texlive-luatex-11: 100% | 211.7 MiB/s |   9.1 MiB |  00m00s
[272/684] Installing texlive-texlive-sc 100% |  18.9 MiB/s | 349.1 KiB |  00m00s
[273/684] Installing texlive-kpathsea-1 100% |  79.7 MiB/s |   2.1 MiB |  00m00s
[274/684] Installing texlive-iftex-11:s 100% |  29.6 MiB/s |  30.3 KiB |  00m00s
[275/684] Installing texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB |  00m00s
[276/684] Installing texlive-pdftexcmds 100% | 207.8 MiB/s | 425.6 KiB |  00m00s
[277/684] Installing texlive-kvoptions- 100% | 269.3 MiB/s | 551.6 KiB |  00m00s
[278/684] Installing texlive-ltxcmds-11 100% | 415.6 MiB/s | 425.5 KiB |  00m00s
[279/684] Installing texlive-url-11:svn 100% |  21.6 MiB/s |  22.1 KiB |  00m00s
[280/684] Installing texlive-atbegshi-1 100% | 144.9 MiB/s | 445.1 KiB |  00m00s
[281/684] Installing texlive-amsfonts-1 100% | 147.4 MiB/s |   6.0 MiB |  00m00s
[282/684] Installing texlive-etex-pkg-1 100% |   0.0   B/s |  19.0 KiB |  00m00s
[283/684] Installing texlive-etoolbox-1 100% |  66.1 MiB/s |  67.7 KiB |  00m00s
[284/684] Installing texlive-booktabs-1 100% |  18.6 MiB/s |  19.0 KiB |  00m00s
[285/684] Installing texlive-infwarerr- 100% | 300.3 MiB/s | 307.5 KiB |  00m00s
[286/684] Installing texlive-atveryend- 100% | 133.8 MiB/s | 411.2 KiB |  00m00s
[287/684] Installing texlive-babel-11:s 100% |  29.6 MiB/s |   2.2 MiB |  00m00s
[288/684] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB |  00m00s
[289/684] Installing texlive-etexcmds-1 100% | 157.4 MiB/s | 322.3 KiB |  00m00s
[290/684] Installing texlive-latex-font 100% |  40.4 MiB/s | 124.2 KiB |  00m00s
[291/684] Installing texlive-pdfescape- 100% | 368.3 MiB/s | 377.2 KiB |  00m00s
[292/684] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB |  00m00s
[293/684] Installing texlive-hologo-11: 100% | 325.3 MiB/s | 666.1 KiB |  00m00s
[294/684] Installing texlive-ragged2e-1 100% | 358.1 MiB/s | 733.3 KiB |  00m00s
[295/684] Installing texlive-setspace-1 100% |   0.0   B/s |  22.4 KiB |  00m00s
[296/684] Installing texlive-bigintcalc 100% | 252.4 MiB/s | 516.8 KiB |  00m00s
[297/684] Installing texlive-graphics-c 100% |   3.8 MiB/s |   3.9 KiB |  00m00s
[298/684] Installing texlive-graphics-1 100% |  62.8 MiB/s | 128.7 KiB |  00m00s
[299/684] Installing texlive-tools-11:s 100% | 100.5 MiB/s | 411.7 KiB |  00m00s
[300/684] Installing texlive-xkeyval-11 100% |  69.9 MiB/s |  71.6 KiB |  00m00s
[301/684] Installing texlive-geometry-1 100% |  49.1 MiB/s |  50.2 KiB |  00m00s
[302/684] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB |  00m00s
[303/684] Installing texlive-colortbl-1 100% |  21.3 MiB/s |  21.8 KiB |  00m00s
[304/684] Installing texlive-hycolor-11 100% | 201.7 MiB/s | 413.1 KiB |  00m00s
[305/684] Installing texlive-intcalc-11 100% | 230.9 MiB/s | 472.8 KiB |  00m00s
[306/684] Installing texlive-kvsetkeys- 100% | 209.4 MiB/s | 428.8 KiB |  00m00s
[307/684] Installing texlive-l3backend- 100% | 369.0 MiB/s |   1.1 MiB |  00m00s
[308/684] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB |  00m00s
[309/684] Installing texlive-natbib-11: 100% |  65.5 MiB/s | 134.2 KiB |  00m00s
[310/684] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB |  00m00s
[311/684] Installing texlive-hypdoc-11: 100% | 175.5 MiB/s | 359.5 KiB |  00m00s
[312/684] Installing texlive-footmisc-1 100% |  21.4 MiB/s |  65.6 KiB |  00m00s
[313/684] Installing texlive-lm-11:svn6 100% | 299.6 MiB/s |  39.5 MiB |  00m00s
[314/684] Installing texlive-multido-11 100% |  19.2 MiB/s |  19.6 KiB |  00m00s
[315/684] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB |  00m00s
[316/684] Installing texlive-subfig-11: 100% |  36.6 MiB/s |  37.5 KiB |  00m00s
[317/684] Installing texlive-carlisle-1 100% |  32.0 MiB/s |  32.8 KiB |  00m00s
[318/684] Installing texlive-translator 100% |  84.6 MiB/s | 519.8 KiB |  00m00s
[319/684] Installing texlive-sauerj-11: 100% |  27.9 MiB/s |  28.6 KiB |  00m00s
[320/684] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB |  00m00s
[321/684] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB |  00m00s
[322/684] Installing texlive-catchfile- 100% | 156.3 MiB/s | 320.0 KiB |  00m00s
[323/684] Installing texlive-ifplatform 100% |  13.1 MiB/s |  13.5 KiB |  00m00s
[324/684] Installing texlive-babelbib-1 100% | 153.8 MiB/s | 787.2 KiB |  00m00s
[325/684] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB |  00m00s
[326/684] Installing texlive-euenc-11:s 100% |  41.2 MiB/s |  42.2 KiB |  00m00s
[327/684] Installing texlive-euler-11:s 100% |  20.9 MiB/s |  21.4 KiB |  00m00s
[328/684] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB |  00m00s
[329/684] Installing texlive-fancybox-1 100% |  40.5 MiB/s |  41.5 KiB |  00m00s
[330/684] Installing texlive-float-11:s 100% |  15.8 MiB/s |  16.2 KiB |  00m00s
[331/684] Installing texlive-grffile-11 100% | 185.9 MiB/s | 380.7 KiB |  00m00s
[332/684] Installing texlive-index-11:s 100% |  60.7 MiB/s |  62.1 KiB |  00m00s
[333/684] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB |  00m00s
[334/684] Installing texlive-ucharcat-1 100% |  10.7 MiB/s |  10.9 KiB |  00m00s
[335/684] Installing texlive-underscore 100% |  19.6 MiB/s |  20.1 KiB |  00m00s
[336/684] Installing texlive-bookmark-1 100% | 186.3 MiB/s | 572.2 KiB |  00m00s
[337/684] Installing texlive-fancyhdr-1 100% |  31.9 MiB/s |  32.7 KiB |  00m00s
[338/684] Installing texlive-firstaid-1 100% | 145.9 MiB/s | 298.8 KiB |  00m00s
[339/684] Installing texlive-gettitlest 100% | 166.1 MiB/s | 340.1 KiB |  00m00s
[340/684] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB |  00m00s
[341/684] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB |  00m00s
[342/684] Installing texlive-latexconfi 100% |   9.6 MiB/s |   9.8 KiB |  00m00s
[343/684] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB |  00m00s
[344/684] Installing texlive-stringenc- 100% | 210.8 MiB/s |   1.1 MiB |  00m00s
[345/684] Installing texlive-glyphlist- 100% |  89.0 MiB/s |  91.1 KiB |  00m00s
[346/684] Installing texlive-lua-alt-ge 100% |   0.0   B/s |   4.3 KiB |  00m00s
[347/684] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB |  00m00s
[348/684] Installing texlive-varwidth-1 100% |  19.8 MiB/s |  20.3 KiB |  00m00s
[349/684] Installing texlive-palatino-1 100% |  80.0 MiB/s |   1.1 MiB |  00m00s
[350/684] Installing texlive-zapfding-1 100% |  40.4 MiB/s |  82.7 KiB |  00m00s
[351/684] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB |  00m00s
[352/684] Installing texlive-marvosym-1 100% |  91.9 MiB/s | 188.3 KiB |  00m00s
[353/684] Installing texlive-paralist-1 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[354/684] Installing texlive-placeins-1 100% |   5.2 MiB/s |   5.4 KiB |  00m00s
[355/684] Installing texlive-metafont-1 100% |  41.2 MiB/s | 802.3 KiB |  00m00s
[356/684] Installing texlive-auto-pst-p 100% |  15.2 MiB/s |  15.6 KiB |  00m00s
[357/684] Installing texlive-breakurl-1 100% |  17.5 MiB/s |  17.9 KiB |  00m00s
[358/684] Installing texlive-fancyref-1 100% |  27.9 MiB/s |  28.6 KiB |  00m00s
[359/684] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB |  00m00s
[360/684] Installing texlive-ltabptch-1 100% |   0.0   B/s |  21.6 KiB |  00m00s
[361/684] Installing texlive-crop-11:sv 100% |  26.8 MiB/s |  27.4 KiB |  00m00s
[362/684] Installing texlive-microtype- 100% | 151.6 MiB/s | 465.6 KiB |  00m00s
[363/684] Installing texlive-pdfmanagem 100% | 444.7 MiB/s |  11.6 MiB |  00m00s
[364/684] Installing texlive-psfrag-11: 100% |  12.7 MiB/s |  13.0 KiB |  00m00s
[365/684] Installing texlive-logreq-11: 100% |  26.6 MiB/s |  27.2 KiB |  00m00s
[366/684] Installing texlive-dvips-11:s 100% |  56.5 MiB/s |   1.6 MiB |  00m00s
[367/684] Installing texlive-hopatch-11 100% | 169.5 MiB/s | 347.2 KiB |  00m00s
[368/684] Installing texlive-thumbpdf-1 100% |   6.9 MiB/s |  98.9 KiB |  00m00s
[369/684] Installing texlive-listofitem 100% | 312.4 MiB/s | 959.6 KiB |  00m00s
[370/684] Installing texlive-anysize-11 100% |   0.0   B/s |   4.1 KiB |  00m00s
[371/684] Installing texlive-cite-11:sv 100% |  61.7 MiB/s |  63.2 KiB |  00m00s
[372/684] Installing texlive-cmap-11:sv 100% |  37.9 MiB/s |  38.8 KiB |  00m00s
[373/684] Installing texlive-everysel-1 100% | 448.6 MiB/s | 459.4 KiB |  00m00s
[374/684] Installing texlive-footnotehy 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[375/684] Installing texlive-latexbug-1 100% |  92.4 MiB/s | 283.8 KiB |  00m00s
[376/684] Installing texlive-lwarp-11:s 100% | 106.9 MiB/s |   4.9 MiB |  00m00s
[377/684] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB |  00m00s
[378/684] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB |  00m00s
[379/684] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB |  00m00s
[380/684] Installing texlive-parskip-11 100% |  16.3 MiB/s |  16.7 KiB |  00m00s
[381/684] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB |  00m00s
[382/684] Installing texlive-rcs-11:svn 100% |  46.6 MiB/s |  47.7 KiB |  00m00s
[383/684] Installing texlive-sansmath-1 100% |   9.1 MiB/s |   9.3 KiB |  00m00s
[384/684] Installing texlive-section-11 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[385/684] Installing texlive-sepnum-11: 100% |  15.4 MiB/s |  15.8 KiB |  00m00s
[386/684] Installing texlive-textcase-1 100% |  11.7 MiB/s |  12.0 KiB |  00m00s
[387/684] Installing texlive-babel-engl 100% |  45.4 MiB/s |  46.5 KiB |  00m00s
[388/684] Installing texlive-fix2col-11 100% |  17.0 MiB/s |  17.4 KiB |  00m00s
[389/684] Installing texlive-latex-lab- 100% | 330.1 MiB/s |   2.3 MiB |  00m00s
[390/684] Installing texlive-mfnfss-11: 100% |  24.2 MiB/s |  24.7 KiB |  00m00s
[391/684] Installing texlive-mptopdf-11 100% |  10.0 MiB/s | 153.5 KiB |  00m00s
[392/684] Installing texlive-pagesel-11 100% | 173.9 MiB/s | 356.1 KiB |  00m00s
[393/684] Installing texlive-pslatex-11 100% |  28.5 MiB/s |  29.2 KiB |  00m00s
[394/684] Installing texlive-pspicture- 100% |  14.4 MiB/s |  14.7 KiB |  00m00s
[395/684] Installing texlive-bibtex-11: 100% |  45.0 MiB/s | 784.0 KiB |  00m00s
[396/684] Installing texlive-colorprofi 100% |  66.9 MiB/s | 274.1 KiB |  00m00s
[397/684] Installing texlive-ec-11:svn2 100% |  51.3 MiB/s |   2.7 MiB |  00m00s
[398/684] Installing texlive-enctex-11: 100% |  61.0 MiB/s | 187.3 KiB |  00m00s
[399/684] Installing texlive-hyphenex-1 100% |  25.5 MiB/s |  26.1 KiB |  00m00s
[400/684] Installing texlive-knuth-loca 100% |  36.8 MiB/s | 113.1 KiB |  00m00s
[401/684] Installing texlive-luahbtex-1 100% | 185.3 MiB/s |   6.3 MiB |  00m00s
[402/684] Installing texlive-makeindex- 100% |  29.3 MiB/s | 510.6 KiB |  00m00s
[403/684] Installing texlive-mflogo-11: 100% |  13.3 MiB/s |  13.6 KiB |  00m00s
[404/684] Installing texlive-mfware-11: 100% |  13.7 MiB/s | 224.8 KiB |  00m00s
[405/684] Installing texlive-tex-11:svn 100% |  23.6 MiB/s | 386.8 KiB |  00m00s
[406/684] Installing texlive-texlive-en 100% | 395.8 MiB/s |   5.9 MiB |  00m00s
[407/684] Installing texlive-texlive-ms 100% | 281.2 MiB/s |   1.4 MiB |  00m00s
[408/684] Installing texlive-xdvi-11:sv 100% |  40.0 MiB/s | 736.5 KiB |  00m00s
[409/684] Installing texlive-collectbox 100% |  27.7 MiB/s |  28.3 KiB |  00m00s
[410/684] Installing texlive-ifoddpage- 100% |  21.0 MiB/s |  21.5 KiB |  00m00s
[411/684] Installing texlive-pdfcolmk-1 100% |  20.2 MiB/s |  20.7 KiB |  00m00s
[412/684] Installing texlive-xcolor-11: 100% |  78.8 MiB/s |  80.7 KiB |  00m00s
[413/684] Installing texlive-eso-pic-11 100% |  27.9 MiB/s |  28.6 KiB |  00m00s
[414/684] Installing texlive-lm-math-11 100% | 179.9 MiB/s | 736.9 KiB |  00m00s
[415/684] Installing texlive-avantgar-1 100% |  95.5 MiB/s |   1.2 MiB |  00m00s
[416/684] Installing texlive-bookman-11 100% |  94.9 MiB/s |   1.2 MiB |  00m00s
[417/684] Installing texlive-charter-11 100% |  81.1 MiB/s | 415.0 KiB |  00m00s
[418/684] Installing texlive-courier-11 100% |  91.5 MiB/s | 937.1 KiB |  00m00s
[419/684] Installing texlive-helvetic-1 100% | 101.6 MiB/s |   1.8 MiB |  00m00s
[420/684] Installing texlive-symbol-11: 100% |  26.7 MiB/s |  82.0 KiB |  00m00s
[421/684] Installing texlive-times-11:s 100% |  83.2 MiB/s |   1.0 MiB |  00m00s
[422/684] Installing texlive-utopia-11: 100% | 134.6 MiB/s | 551.4 KiB |  00m00s
[423/684] Installing texlive-luabidi-11 100% |  26.1 MiB/s |  26.8 KiB |  00m00s
[424/684] Installing texlive-makecmds-1 100% |  11.6 MiB/s |  11.9 KiB |  00m00s
[425/684] Installing texlive-dehyph-11: 100% | 117.8 MiB/s | 241.2 KiB |  00m00s
[426/684] Installing texlive-pdftex-11: 100% | 132.3 MiB/s |   4.6 MiB |  00m00s
[427/684] Installing texlive-parallel-1 100% |  22.8 MiB/s |  23.3 KiB |  00m00s
[428/684] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB |  00m00s
[429/684] Installing texlive-fpl-11:svn 100% | 212.0 MiB/s | 651.2 KiB |  00m00s
[430/684] Installing texlive-mathpazo-1 100% |  38.0 MiB/s | 116.7 KiB |  00m00s
[431/684] Installing texlive-psnfss-11: 100% |  19.4 MiB/s | 119.5 KiB |  00m00s
[432/684] Installing texlive-ctablestac 100% |  20.4 MiB/s |  20.9 KiB |  00m00s
[433/684] Installing texlive-luatexbase 100% |  14.7 MiB/s |  15.1 KiB |  00m00s
[434/684] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB |  00m00s
[435/684] Installing texlive-lualibs-11 100% | 188.4 MiB/s | 771.6 KiB |  00m00s
[436/684] Installing texlive-luaotfload 100% | 222.1 MiB/s |   8.2 MiB |  00m00s
[437/684] Installing texlive-beton-11:s 100% |  12.2 MiB/s |  12.5 KiB |  00m00s
[438/684] Installing texlive-finstrut-1 100% |  25.7 MiB/s |  26.4 KiB |  00m00s
[439/684] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB |  00m00s
[440/684] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB |  00m00s
[441/684] Installing texlive-enumitem-1 100% |  58.7 MiB/s |  60.1 KiB |  00m00s
[442/684] Installing texlive-marginnote 100% |  22.8 MiB/s |  23.3 KiB |  00m00s
[443/684] Installing texlive-mparhack-1 100% |  20.6 MiB/s |  21.1 KiB |  00m00s
[444/684] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB |  00m00s
[445/684] Installing texlive-rsfs-11:sv 100% |  49.9 MiB/s | 102.2 KiB |  00m00s
[446/684] Installing texlive-hobsub-11: 100% |  80.0 MiB/s |  81.9 KiB |  00m00s
[447/684] Installing texlive-hyperref-1 100% | 187.8 MiB/s | 769.4 KiB |  00m00s
[448/684] Installing texlive-attachfile 100% |  32.2 MiB/s | 494.8 KiB |  00m00s
[449/684] Installing texlive-attachfile 100% |  32.4 MiB/s |  33.2 KiB |  00m00s
[450/684] Installing texlive-kastrup-11 100% |   4.1 MiB/s |   4.2 KiB |  00m00s
[451/684] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB |  00m00s
[452/684] Installing texlive-ctable-11: 100% |  20.9 MiB/s |  21.4 KiB |  00m00s
[453/684] Installing texlive-changepage 100% |  27.6 MiB/s |  28.2 KiB |  00m00s
[454/684] Installing texlive-titlesec-1 100% |  96.6 MiB/s |  98.9 KiB |  00m00s
[455/684] Installing texlive-ifmtarg-11 100% |   9.7 MiB/s |   9.9 KiB |  00m00s
[456/684] Installing texlive-xetexconfi 100% |   0.0   B/s | 776.0   B |  00m00s
[457/684] Installing texlive-fileconten 100% |  12.7 MiB/s |  13.0 KiB |  00m00s
[458/684] Installing texlive-pst-math-1 100% |  23.1 MiB/s |  23.7 KiB |  00m00s
[459/684] Installing texlive-notoccite- 100% |   0.0   B/s |   3.0 KiB |  00m00s
[460/684] Installing texlive-xstring-11 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[461/684] Installing perl-XML-SAX-0:1.0 100% |   1.7 MiB/s | 126.0 KiB |  00m00s
[462/684] Installing perl-XML-LibXML-1: 100% |   7.3 MiB/s | 931.5 KiB |  00m00s
[463/684] Installing perl-XML-LibXML-Si 100% |  51.1 MiB/s |  52.3 KiB |  00m00s
[464/684] Installing perl-Class-Accesso 100% |  41.9 MiB/s |  42.9 KiB |  00m00s
[465/684] Installing perl-File-Slurper- 100% |  29.3 MiB/s |  30.0 KiB |  00m00s
[466/684] Installing perl-IO-String-0:1 100% |  17.4 MiB/s |  17.8 KiB |  00m00s
[467/684] Installing perl-IPC-Run3-0:0. 100% |  30.9 MiB/s |  63.3 KiB |  00m00s
[468/684] Installing perl-Regexp-Common 100% |  77.1 MiB/s | 473.9 KiB |  00m00s
[469/684] Installing perl-Sort-Key-0:1. 100% |  27.8 MiB/s |  85.5 KiB |  00m00s
[470/684] Installing perl-Text-CSV-0:2. 100% | 170.6 MiB/s | 349.4 KiB |  00m00s
[471/684] Installing perl-Text-Roman-0: 100% |  33.8 MiB/s |  34.7 KiB |  00m00s
[472/684] Installing perl-XML-Writer-0: 100% |  33.5 MiB/s |  68.6 KiB |  00m00s
[473/684] Installing perl-autovivificat 100% |  31.1 MiB/s |  63.7 KiB |  00m00s
[474/684] Installing perl-meta-notation 100% |   0.0   B/s |   2.3 KiB |  00m00s
[475/684] Installing perl-sigtrap-0:1.1 100% |   0.0   B/s |  11.4 KiB |  00m00s
[476/684] Installing perl-MIME-Charset- 100% |  52.4 MiB/s | 107.3 KiB |  00m00s
[477/684] Installing perl-Unicode-LineB 100% |  66.0 MiB/s | 270.5 KiB |  00m00s
[478/684] Installing perl-IPC-SysV-0:2. 100% |  37.5 MiB/s |  76.8 KiB |  00m00s
[479/684] Installing perl-Mail-Sender-1 100% | 158.6 MiB/s | 162.5 KiB |  00m00s
[480/684] Installing perl-Sys-Syslog-0: 100% |  47.4 MiB/s |  97.0 KiB |  00m00s
[481/684] Installing perl-List-UtilsBy- 100% |  55.8 MiB/s |  57.2 KiB |  00m00s
[482/684] Installing perl-List-AllUtils 100% | 132.7 MiB/s | 135.9 KiB |  00m00s
[483/684] Installing perl-Mozilla-CA-0: 100% |  11.1 MiB/s |  11.3 KiB |  00m00s
[484/684] Installing perl-LWP-Protocol- 100% |  30.4 MiB/s |  31.1 KiB |  00m00s
[485/684] Installing perl-Convert-ASN1- 100% |  56.4 MiB/s | 173.4 KiB |  00m00s
[486/684] Installing perl-ExtUtils-MM-U 100% |   3.6 MiB/s |   3.7 KiB |  00m00s
[487/684] Installing perl-Class-Singlet 100% |  40.4 MiB/s |  41.4 KiB |  00m00s
[488/684] Installing perl-File-Compare- 100% |   0.0   B/s |   6.1 KiB |  00m00s
[489/684] Installing perl-Tie-Cycle-0:1 100% |  24.7 MiB/s |  25.3 KiB |  00m00s
[490/684] Installing perl-Business-ISMN 100% |  36.8 MiB/s |  37.7 KiB |  00m00s
[491/684] Installing perl-Business-ISBN 100% |  95.4 MiB/s | 293.2 KiB |  00m00s
[492/684] Installing perl-Business-ISBN 100% |  56.5 MiB/s |  57.8 KiB |  00m00s
[493/684] Installing perl-GSSAPI-0:0.28 100% |  60.7 MiB/s | 124.3 KiB |  00m00s
[494/684] Installing perl-Tie-0:4.6-513 100% |  32.9 MiB/s |  33.7 KiB |  00m00s
[495/684] Installing perl-Authen-SASL-0 100% |  39.6 MiB/s | 121.8 KiB |  00m00s
[496/684] Installing perl-IPC-System-Si 100% |  35.9 MiB/s |  73.5 KiB |  00m00s
[497/684] Installing perl-Tie-RefHash-0 100% |  36.5 MiB/s |  37.4 KiB |  00m00s
[498/684] Installing perl-autodie-0:2.3 100% |  71.3 MiB/s | 219.1 KiB |  00m00s
[499/684] Installing perl-XML-LibXSLT-0 100% |  35.8 MiB/s | 146.6 KiB |  00m00s
[500/684] Installing perl-deprecate-0:0 100% |   0.0   B/s |   6.9 KiB |  00m00s
[501/684] Installing perl-Text-Soundex- 100% |  25.9 MiB/s |  53.1 KiB |  00m00s
[502/684] Installing perl-Package-Gener 100% |  30.8 MiB/s |  31.6 KiB |  00m00s
[503/684] Installing perl-Sub-Exporter- 100% |  49.3 MiB/s | 201.9 KiB |  00m00s
[504/684] Installing perl-Sub-Exporter- 100% |  28.2 MiB/s |  28.9 KiB |  00m00s
[505/684] Installing perl-Devel-GlobalD 100% |  18.6 MiB/s |  19.0 KiB |  00m00s
[506/684] Installing perl-MRO-Compat-0: 100% |  43.8 MiB/s |  44.9 KiB |  00m00s
[507/684] Installing perl-XString-0:0.0 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
[508/684] Installing perl-Class-Method- 100% |  35.7 MiB/s | 109.6 KiB |  00m00s
[509/684] Installing perl-Role-Tiny-0:2 100% |  62.0 MiB/s |  63.5 KiB |  00m00s
[510/684] Installing perl-Ref-Util-XS-0 100% |  21.8 MiB/s |  44.7 KiB |  00m00s
[511/684] Installing perl-Ref-Util-0:0. 100% |  32.4 MiB/s |  33.2 KiB |  00m00s
[512/684] Installing perl-Math-Complex- 100% |  83.8 MiB/s |  85.8 KiB |  00m00s
[513/684] Installing perl-Math-BigInt-1 100% | 187.8 MiB/s | 961.8 KiB |  00m00s
[514/684] Installing perl-Data-Uniqid-0 100% |   5.7 MiB/s |   5.8 KiB |  00m00s
[515/684] Installing perl-JSON-0:4.10-6 100% | 133.3 MiB/s | 273.0 KiB |  00m00s
[516/684] Installing perl-LDAP-1:0.68-1 100% |  94.0 MiB/s | 962.3 KiB |  00m00s
[517/684] Installing perl-Net-SMTP-SSL- 100% |   5.2 MiB/s |   5.3 KiB |  00m00s
[518/684] Installing perl-MailTools-0:2 100% |  51.9 MiB/s | 212.5 KiB |  00m00s
[519/684] Installing perl-Email-Date-Fo 100% |  25.4 MiB/s |  26.0 KiB |  00m00s
[520/684] Installing perl-MIME-Types-0: 100% | 180.0 MiB/s | 184.3 KiB |  00m00s
[521/684] Installing perl-MIME-Lite-0:3 100% | 121.6 MiB/s | 248.9 KiB |  00m00s
[522/684] Installing perl-I18N-LangTags 100% |  81.6 MiB/s |  83.6 KiB |  00m00s
[523/684] Installing perl-Locale-Makete 100% |  84.9 MiB/s | 173.9 KiB |  00m00s
[524/684] Installing perl-Locale-Makete 100% |   0.0   B/s |  13.5 KiB |  00m00s
[525/684] Installing perl-Params-Check- 100% |  27.9 MiB/s |  28.6 KiB |  00m00s
[526/684] Installing perl-Module-Load-C 100% |  29.2 MiB/s |  29.9 KiB |  00m00s
[527/684] Installing perl-IPC-Cmd-2:1.0 100% |  41.9 MiB/s |  85.9 KiB |  00m00s
[528/684] Installing perl-Number-Compar 100% |   5.3 MiB/s |   5.4 KiB |  00m00s
[529/684] Installing perl-Text-Glob-0:0 100% |   9.1 MiB/s |   9.3 KiB |  00m00s
[530/684] Installing perl-File-Find-Rul 100% |   2.9 MiB/s |  44.4 KiB |  00m00s
[531/684] Installing perl-Data-Compare- 100% |  28.4 MiB/s |  58.1 KiB |  00m00s
[532/684] Installing perl-Class-Data-In 100% |   6.9 MiB/s |   7.0 KiB |  00m00s
[533/684] Installing perl-Exception-Cla 100% |  46.2 MiB/s |  94.6 KiB |  00m00s
[534/684] Installing perl-PadWalker-0:2 100% |  45.6 MiB/s |  46.7 KiB |  00m00s
[535/684] Installing perl-Devel-Caller- 100% |  28.4 MiB/s |  29.1 KiB |  00m00s
[536/684] Installing perl-Devel-LexAlia 100% |  10.3 MiB/s |  21.0 KiB |  00m00s
[537/684] Installing perl-Hash-Util-Fie 100% |  65.6 MiB/s |  67.2 KiB |  00m00s
[538/684] Installing perl-Variable-Magi 100% |  64.8 MiB/s | 132.7 KiB |  00m00s
[539/684] Installing perl-B-Hooks-EndOf 100% |  24.4 MiB/s |  75.1 KiB |  00m00s
[540/684] Installing perl-English-0:1.1 100% |   0.0   B/s |   6.6 KiB |  00m00s
[541/684] Installing perltidy-0:2025010 100% | 143.1 MiB/s |   4.0 MiB |  00m00s
[542/684] Installing perl-Eval-Closure- 100% |  16.9 MiB/s |  34.6 KiB |  00m00s
[543/684] Installing perl-Params-Valida 100% |  46.0 MiB/s |  94.2 KiB |  00m00s
[544/684] Installing perl-Specio-0:0.49 100% |  56.0 MiB/s | 344.0 KiB |  00m00s
[545/684] Installing perl-Package-Stash 100% |  34.7 MiB/s |  71.0 KiB |  00m00s
[546/684] Installing perl-Package-Stash 100% |   3.8 MiB/s |  58.1 KiB |  00m00s
[547/684] Installing perl-namespace-cle 100% |  14.5 MiB/s |  44.6 KiB |  00m00s
[548/684] Installing perl-namespace-aut 100% |  44.0 MiB/s |  45.0 KiB |  00m00s
[549/684] Installing perl-Log-Dispatch- 100% |  29.3 MiB/s | 150.0 KiB |  00m00s
[550/684] Installing perl-Log-Dispatch- 100% |  26.6 MiB/s |  54.5 KiB |  00m00s
[551/684] Installing perl-Log-Log4perl- 100% |  39.9 MiB/s | 897.8 KiB |  00m00s
[552/684] Installing perl-Class-Inspect 100% |  57.9 MiB/s |  59.3 KiB |  00m00s
[553/684] Installing perl-File-ShareDir 100% |   8.3 MiB/s |  59.2 KiB |  00m00s
[554/684] Installing perl-DateTime-Loca 100% | 132.9 MiB/s |  23.0 MiB |  00m00s
[555/684] Installing perl-DynaLoader-Fu 100% |  20.3 MiB/s |  20.7 KiB |  00m00s
[556/684] Installing perl-Devel-CallChe 100% |  19.2 MiB/s |  39.2 KiB |  00m00s
[557/684] Installing perl-Params-Classi 100% |  24.2 MiB/s |  49.6 KiB |  00m00s
[558/684] Installing perl-DateTime-Time 100% |  28.9 MiB/s |  29.6 KiB |  00m00s
[559/684] Installing perl-DateTime-Time 100% |  12.6 MiB/s |  25.8 KiB |  00m00s
[560/684] Installing perl-DateTime-Time 100% | 203.4 MiB/s |   6.1 MiB |  00m00s
[561/684] Installing perl-DateTime-2:1. 100% |  94.7 MiB/s | 387.7 KiB |  00m00s
[562/684] Installing perl-DateTime-Cale 100% |  33.5 MiB/s |  34.3 KiB |  00m00s
[563/684] Installing perl-DateTime-Form 100% |  48.2 MiB/s |  98.7 KiB |  00m00s
[564/684] Installing perl-DateTime-Form 100% |  34.7 MiB/s | 213.0 KiB |  00m00s
[565/684] Installing biber-0:2.19-6.fc4 100% |  60.9 MiB/s |   1.3 MiB |  00m00s
[566/684] Installing texlive-l3packages 100% | 129.6 MiB/s | 265.5 KiB |  00m00s
[567/684] Installing texlive-fontspec-1 100% | 322.8 MiB/s | 330.6 KiB |  00m00s
[568/684] Installing texlive-xunicode-1 100% | 107.6 MiB/s | 220.3 KiB |  00m00s
[569/684] Installing texlive-tipa-11:sv 100% | 199.6 MiB/s |   3.8 MiB |  00m00s
[570/684] Installing texlive-currfile-1 100% |  34.1 MiB/s |  35.0 KiB |  00m00s
[571/684] Installing texlive-filehook-1 100% |  27.9 MiB/s |  57.2 KiB |  00m00s
[572/684] Installing texlive-pgf-11:svn 100% |  97.6 MiB/s |   4.9 MiB |  00m00s
[573/684] Installing texlive-ms-11:svn5 100% |  18.8 MiB/s |  19.3 KiB |  00m00s
[574/684] Installing texlive-koma-scrip 100% | 342.5 MiB/s |   9.9 MiB |  00m00s
[575/684] Installing texlive-listings-1 100% | 189.7 MiB/s | 582.9 KiB |  00m00s
[576/684] Installing texlive-algorithms 100% |  19.1 MiB/s |  39.1 KiB |  00m00s
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[627/684] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB |  00m00s
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[636/684] Installing python3-rpm-genera 100% |  81.0 MiB/s |  82.9 KiB |  00m00s
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[638/684] Installing python3-numpy-1:2. 100% | 215.1 MiB/s |  41.1 MiB |  00m00s
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[640/684] Installing graphviz-0:12.2.1- 100% | 221.6 MiB/s |  20.8 MiB |  00m00s
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[653/684] Installing jsoncpp-0:1.9.5-8. 100% |  35.6 MiB/s | 254.9 KiB |  00m00s
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[655/684] Installing cmake-0:3.31.4-1.f 100% | 263.6 MiB/s |  32.9 MiB |  00m00s
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[657/684] Installing maloc-0:1.5-31.fc4 100% |  94.9 MiB/s | 291.5 KiB |  00m00s
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[665/684] Installing gcc-c++-0:15.0.1-0 100% | 256.6 MiB/s |  40.8 MiB |  00m00s
[666/684] Installing maloc-devel-0:1.5- 100% | 158.7 MiB/s |   3.2 MiB |  00m00s
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Warning: skipped OpenPGP checks for 682 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Complete!
Finish: build setup for apbs-3.0.0-26.fc42.src.rpm
Start: rpmbuild apbs-3.0.0-26.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1736985600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.zp6ARc
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ test -d /builddir/build/BUILD/apbs-3.0.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/apbs-3.0.0-build
+ /usr/bin/rm -rf /builddir/build/BUILD/apbs-3.0.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.65ht3n
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ rm -rf apbs-3.0.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/apbs-3.0.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd apbs-3.0.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (apbs-cmake.patch):
+ echo 'Patch #0 (apbs-cmake.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p2 -b --suffix .apbs-cmake --fuzz=0
patching file CMakeLists.txt
patching file src/CMakeLists.txt
patching file tools/manip/CMakeLists.txt
patching file tools/mesh/CMakeLists.txt
Patch #1 (apbs-exclude_tests.patch):
+ echo 'Patch #1 (apbs-exclude_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .exclude_tests --fuzz=0
patching file tests/test_cases.cfg
Patch #2 (apbs-python311.patch):
+ echo 'Patch #2 (apbs-python311.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .python311 --fuzz=0
patching file tools/manip/inputgen.py
Patch #3 (apbs-c99.patch):
+ echo 'Patch #3 (apbs-c99.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file contrib/iapbs/src/apbs_driver.c
+ cp -p contrib/iapbs/COPYING contrib/iapbs/iapbs-COPYING
+ cp -p /builddir/build/SOURCES/apbs-LGPL_V2 contrib/iapbs/iapbs-LGPLv2
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.uvvBfx
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd apbs-3.0.0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm'
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm'
+ mkdir -p build
+ cmake -S . -B build -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DENABLE_FETK:BOOL=OFF '-DCMAKE_C_FLAGS:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm -DNDEBUG' '-DCMAKE_CXX_FLAGS:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm -DNDEBUG' -DBUILD_SHARED_LIBS:BOOL=OFF -DENABLE_PYTHON:BOOL=ON -DBUILD_DOC:BOOL=ON -DBUILD_TESTING:BOOL=ON -DENABLE_TESTS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSHARE_INSTALL_PREFIX:PATH=/usr/share
CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy):
  The OLD behavior for policy CMP0054 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is GNU 15.0.1
-- The CXX compiler identification is GNU 15.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting project paths
-- Setting lookup paths for headers and libraries
-- Computing machine epsilon values
-- Floating point epsilon is 2.220446e-16
-- Double precision epsilon is 2.220446e-16
-- Looking for time
-- Looking for time - found
-- Looking for rand
-- Looking for rand - found
-- Looking for srand
-- Looking for srand - found
-- Inline functions enabled
-- Checking for OpenMP
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- OpenMP support enabled
CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc
-- Added apbs_mg
-- Adding apbs_routines
-- With source files routines.c
-- With external header files 
-- With internal header files 
-- With library dependencies m;stdc++;maloc;-fopenmp
-- Added apbs_routines
-- External Headers: 
--  
-- APBS Libraries: m;stdc++;maloc;-fopenmp
-- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines
--  
-- -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -lm -DNDEBUG -fPIC
-- Building documentation enabled
-- Found Doxygen: /usr/bin/doxygen (found version "1.13.2") found components: doxygen dot
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs
-- Building manip
-- libraries: apbs
CMake Deprecation Warning at tools/python/CMakeLists.txt:2 (CMAKE_POLICY):
  The OLD behavior for policy CMP0078 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/python/CMakeLists.txt:3 (CMAKE_POLICY):
  The OLD behavior for policy CMP0086 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Found SWIG: /usr/bin/swig (found version "4.3.0")
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter Development Development.Module Development.Embed
-- ******* Python3 FOUND
-- ***** Python3 include path is: /usr/include/python3.13
-- ***** Python3 library path is: /usr/lib64/libpython3.13.so
-- ***** Python3 library dir  is: /usr/lib64
-- Building of iAPBS interface enabled
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter
-- ******* Python3 FOUND /usr/bin/python3.13
-- TEST born_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t born
-- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t actin-dimer-auto
-- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t actin-dimer-parallel
-- TEST alkanes_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t alkanes
-- TEST FKBP_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t FKBP
-- TEST hca-bind_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t hca-bind
-- TEST ionize_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t ionize
-- TEST ion-pmf_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t ion-pmf
-- TEST ion-protein_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t ion-protein
-- TEST pka-lig_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t pka-lig
-- TEST point-pmf_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t point-pmf
-- TEST solv_test COMMAND /usr/bin/python3.13 /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/apbs -t solv
-- Configuring done (3.0s)
-- Generating done (0.1s)
-- Build files have been written to: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build
+ make -O -j1 V=1 -C build
make: Entering directory '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build'
[  1%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c: In function ‘Vgrid_readDXBIN’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:816:13: warning: variable ‘isBinary’ set but not used [-Wunused-but-set-variable]
  816 |         int isBinary = 0;
      |             ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:813:25: warning: unused variable ‘itmp’ [-Wunused-variable]
  813 |         size_t i, j, k, itmp, u;
      |                         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c: In function ‘Vgrid_writeUHBD’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:1697:36: warning: variable ‘hy’ set but not used [-Wunused-but-set-variable]
 1697 |     double xmin, ymin, zmin, hzed, hy, hx;
      |                                    ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:1697:30: warning: variable ‘hzed’ set but not used [-Wunused-but-set-variable]
 1697 |     double xmin, ymin, zmin, hzed, hy, hx;
      |                              ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c: In function ‘Vgrid_readDXBIN’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:853:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fgets(tok, VMAX_BUFSIZE, fd);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:831:17: warning: argument 1 null where non-null expected [-Wnonnull]
  831 |                 fclose(fd);
      |                 ^~~~~~~~~~
In file included from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.h:67,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:57:
/usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
[  2%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vmgrid.c: In function ‘Vmgrid_addGrid’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vmgrid.c:198:12: warning: unused variable ‘tgrad’ [-Wunused-variable]
  198 |     double tgrad[3];
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vmgrid.c:197:15: warning: unused variable ‘rc’ [-Wunused-variable]
  197 |     int i, j, rc;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vmgrid.c:197:12: warning: unused variable ‘j’ [-Wunused-variable]
  197 |     int i, j, rc;
      |            ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vmgrid.c:197:9: warning: unused variable ‘i’ [-Wunused-variable]
  197 |     int i, j, rc;
      |         ^
[  3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c: In function ‘Vopot_curvature’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c:219:26: warning: variable ‘eps_w’ set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c:219:18: warning: variable ‘charge’ set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c:219:15: warning: variable ‘T’ set but not used [-Wunused-but-set-variable]
  219 |     double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
      |               ^
[  4%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_ctor2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:157:61: warning: variable ‘zkappa2’ set but not used [-Wunused-but-set-variable]
  157 |     double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2;
      |                                                             ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_qmEnergySMPBE’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1503:12: warning: variable ‘zks2’ set but not used [-Wunused-but-set-variable]
 1503 |            zks2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_qfEnergyPoint’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1712:13: warning: variable ‘pvec’ set but not used [-Wunused-but-set-variable]
 1712 |     double *pvec;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1709:24: warning: variable ‘zmax’ set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1709:18: warning: variable ‘ymax’ set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1709:12: warning: variable ‘xmax’ set but not used [-Wunused-but-set-variable]
 1709 |     double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_qfAtomEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1794:36: warning: variable ‘zmax’ set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |                                    ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1794:24: warning: variable ‘ymax’ set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1794:12: warning: variable ‘xmax’ set but not used [-Wunused-but-set-variable]
 1794 |     double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘focusFillBound’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1953:12: warning: variable ‘charge’ set but not used [-Wunused-but-set-variable]
 1953 |            charge,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1952:13: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable]
 1952 |            *apos,
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1951:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 1951 |            size,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1950:12: warning: variable ‘xkappa’ set but not used [-Wunused-but-set-variable]
 1950 |            xkappa,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcfl2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2668:40: warning: variable ‘qzy’ set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                        ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2668:36: warning: variable ‘qzx’ set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                    ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2668:24: warning: variable ‘qyx’ set but not used [-Wunused-but-set-variable]
 2668 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcCalcOrig’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2832:34: warning: unused variable ‘debye’ [-Wunused-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2832:22: warning: variable ‘quadrupole’ set but not used [-Wunused-but-set-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2832:13: warning: variable ‘dipole’ set but not used [-Wunused-but-set-variable]
 2832 |     double *dipole, *quadrupole, debye, eps_p;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcflnew’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3415:31: warning: variable ‘eps_p’ set but not used [-Wunused-but-set-variable]
 3415 |     double dist, pre1, eps_w, eps_p, T, xkappa;
      |                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:29: warning: unused variable ‘z1’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:25: warning: unused variable ‘z0’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:21: warning: unused variable ‘y1’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                     ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:17: warning: unused variable ‘y0’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:13: warning: unused variable ‘x1’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3410:9: warning: unused variable ‘x0’ [-Wunused-variable]
 3410 |     int x0, x1, y0, y1, z0, z1;
      |         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3409:13: warning: unused variable ‘k’ [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3409:11: warning: unused variable ‘j’ [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |           ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3409:9: warning: unused variable ‘i’ [-Wunused-variable]
 3409 |     int i,j,k, iatom, igrid;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘multipolebc’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3492:19: warning: variable ‘kr3’ set but not used [-Wunused-but-set-variable]
 3492 |     double kr,kr2,kr3;
      |                   ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcfl_sdh’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3608:40: warning: variable ‘qzy’ set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                        ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3608:36: warning: variable ‘qzx’ set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                                    ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3608:24: warning: variable ‘qyx’ set but not used [-Wunused-but-set-variable]
 3608 |     double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3604:22: warning: unused variable ‘quadrupole’ [-Wunused-variable]
 3604 |     double *dipole, *quadrupole;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3604:13: warning: unused variable ‘dipole’ [-Wunused-variable]
 3604 |     double *dipole, *quadrupole;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcfl_mdh’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3875:41: warning: variable ‘eps_p’ set but not used [-Wunused-but-set-variable]
 3875 |     double size, charge, xkappa, eps_w, eps_p, T, pre1, dist;
      |                                         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3874:22: warning: unused variable ‘quadrupole’ [-Wunused-variable]
 3874 |     double *dipole, *quadrupole;
      |                      ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3874:13: warning: unused variable ‘dipole’ [-Wunused-variable]
 3874 |     double *dipole, *quadrupole;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcfl_mem’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4008:24: warning: unused variable ‘edge_L’ [-Wunused-variable]
 4008 |     double A, B, C, D, edge_L, l;
      |                        ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4007:38: warning: unused variable ‘z_shift’ [-Wunused-variable]
 4007 |     double dist, val, z_low, z_high, z_shift;
      |                                      ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4007:12: warning: unused variable ‘dist’ [-Wunused-variable]
 4007 |     double dist, val, z_low, z_high, z_shift;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcfl_map’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4177:38: warning: variable ‘hzed’ set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4177:34: warning: variable ‘hy’ set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                                  ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4177:30: warning: variable ‘hx’ set but not used [-Wunused-but-set-variable]
 4177 |     double position[3], pot, hx, hy, hzed;
      |                              ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4176:11: warning: unused variable ‘pbe’ [-Wunused-variable]
 4176 |     Vpbe *pbe;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefMap’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4492:46: warning: unused variable ‘pot’ [-Wunused-variable]
 4492 |     double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed;
      |                                              ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefMolIon’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4638:16: warning: variable ‘surfMeth’ set but not used [-Wunused-but-set-variable]
 4638 |     Vsurf_Meth surfMeth;
      |                ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4630:11: warning: variable ‘acc’ set but not used [-Wunused-but-set-variable]
 4630 |     Vacc *acc;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefMolDielNoSmooth’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4746:30: warning: unused variable ‘deps’ [-Wunused-variable]
 4746 |     double srad, epsw, epsp, deps, area;
      |                              ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefSpline’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5031:47: warning: variable ‘rtot2’ set but not used [-Wunused-but-set-variable]
 5031 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCharge’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5289:15: warning: unused variable ‘rc’ [-Wunused-variable]
 5289 |     Vrc_Codes rc;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoChargeMap’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5346:49: warning: variable ‘hzed’ set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5346:45: warning: variable ‘hy’ set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5346:41: warning: variable ‘hx’ set but not used [-Wunused-but-set-variable]
 5346 |     double position[3], charge, zmagic, hx, hy, hzed;
      |                                         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_force’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5829:12: warning: unused variable ‘npF’ [-Wunused-variable]
 5829 |     double npF[3];                  /* Non-polar boundary force */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_ibForce’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5854:24: warning: variable ‘zlen’ set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5854:18: warning: variable ‘ylen’ set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5854:12: warning: variable ‘xlen’ set but not used [-Wunused-but-set-variable]
 5854 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:5848:13: warning: variable ‘alist’ set but not used [-Wunused-but-set-variable]
 5848 |     Valist *alist;
      |             ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_dbForce’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6019:55: warning: variable ‘kT’ set but not used [-Wunused-but-set-variable]
 6019 |     double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
      |                                                       ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6019:18: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable]
 6019 |     double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
      |                  ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6018:66: warning: variable ‘rtot2’ set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                                                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6018:24: warning: variable ‘zlen’ set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6018:18: warning: variable ‘ylen’ set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6018:12: warning: variable ‘xlen’ set but not used [-Wunused-but-set-variable]
 6018 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘qfForceSpline2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6453:24: warning: variable ‘zlen’ set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6453:18: warning: variable ‘ylen’ set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6453:12: warning: variable ‘xlen’ set but not used [-Wunused-but-set-variable]
 6453 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘qfForceSpline4’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6576:15: warning: unused variable ‘k’ [-Wunused-variable]
 6576 |     int i, j, k, ii, jj, kk;
      |               ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6576:12: warning: unused variable ‘j’ [-Wunused-variable]
 6576 |     int i, j, k, ii, jj, kk;
      |            ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6568:24: warning: variable ‘zlen’ set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                        ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6568:18: warning: variable ‘ylen’ set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |                  ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6568:12: warning: variable ‘xlen’ set but not used [-Wunused-but-set-variable]
 6568 |     double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘markFrac’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6692:39: warning: variable ‘a000’ set but not used [-Wunused-but-set-variable]
 6692 |     double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2;
      |                                       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘zlapSolve’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6912:12: warning: unused variable ‘norm’ [-Wunused-variable]
 6912 |     double norm, coef, proj, eigx, eigy, eigz;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘Vpmg_solveLaplace’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7044:35: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
 7044 |     int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
      |                                   ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7044:18: warning: unused variable ‘ijk’ [-Wunused-variable]
 7044 |     int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoPermanentMultipole’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:58: warning: unused variable ‘mqzz’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                          ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:53: warning: unused variable ‘mqzy’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:48: warning: unused variable ‘mqzx’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                                ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:43: warning: unused variable ‘mqyy’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:38: warning: unused variable ‘mqyx’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:33: warning: unused variable ‘mqxx’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:29: warning: unused variable ‘muz’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                             ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:25: warning: unused variable ‘muy’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:21: warning: unused variable ‘mux’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:18: warning: unused variable ‘mc’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |                  ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7263:12: warning: unused variable ‘debye’ [-Wunused-variable]
 7263 |     double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7262:24: warning: unused variable ‘mr2’ [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                        ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7262:20: warning: unused variable ‘mkr’ [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                    ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7262:16: warning: unused variable ‘mjr’ [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7262:12: warning: unused variable ‘mir’ [-Wunused-variable]
 7262 |     double mir,mjr,mkr,mr2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7258:9: warning: unused variable ‘i’ [-Wunused-variable]
 7258 |     int i, ii, jj, kk, nx, ny, nz, iatom;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7253:47: warning: unused variable ‘qave’ [-Wunused-variable]
 7253 |     double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
      |                                               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7252:29: warning: unused variable ‘quad’ [-Wunused-variable]
 7252 |     double charge, *dipole,*quad;
      |                             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7252:21: warning: unused variable ‘dipole’ [-Wunused-variable]
 7252 |     double charge, *dipole,*quad;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefSpline4’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:9948:47: warning: variable ‘rtot2’ set but not used [-Wunused-but-set-variable]
 9948 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:9946:42: warning: unused variable ‘w2i’ [-Wunused-variable]
 9946 |     double irad, dx, dy, dz, epsw, epsp, w2i;
      |                                          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoPermanentInduced’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10278:9: warning: unused variable ‘i’ [-Wunused-variable]
10278 |     int i, ii, jj, kk, nx, ny, nz, iatom;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10273:47: warning: unused variable ‘qave’ [-Wunused-variable]
10273 |     double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
      |                                               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10272:29: warning: unused variable ‘quad’ [-Wunused-variable]
10272 |     double charge, *dipole,*quad;
      |                             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10272:21: warning: unused variable ‘dipole’ [-Wunused-variable]
10272 |     double charge, *dipole,*quad;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘fillcoCoefSpline3’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10441:27: warning: variable ‘e5’ set but not used [-Wunused-but-set-variable]
10441 |     double e, e2, e3, e4, e5;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10439:47: warning: variable ‘rtot2’ set but not used [-Wunused-but-set-variable]
10439 |     double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
      |                                               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10437:42: warning: unused variable ‘w2i’ [-Wunused-variable]
10437 |     double irad, dx, dy, dz, epsw, epsp, w2i;
      |                                          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcolcomp’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10746:55: warning: variable ‘mxlv’ set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                                       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10746:47: warning: unused variable ‘maxlev’ [-Wunused-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10746:39: warning: unused variable ‘ierror’ [-Wunused-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |                                       ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10746:15: warning: variable ‘niwk’ set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10746:9: warning: variable ‘nrwk’ set but not used [-Wunused-but-set-variable]
10746 |     int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10743:29: warning: unused variable ‘i’ [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |                             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10743:21: warning: unused variable ‘nnzero’ [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10743:15: warning: unused variable ‘ncol’ [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10743:9: warning: unused variable ‘nrow’ [-Wunused-variable]
10743 |     int nrow, ncol, nnzero, i;
      |         ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:73:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcolcomp2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10804:5: note: in expansion of macro ‘MAT2’
10804 |     MAT2(iz, 50, nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcolcomp3’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10836:5: note: in expansion of macro ‘MAT2’
10836 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c: In function ‘bcolcomp4’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10874:5: note: in expansion of macro ‘MAT3’
10874 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10873:5: note: in expansion of macro ‘MAT3’
10873 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10872:5: note: in expansion of macro ‘MAT3’
10872 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10871:5: note: in expansion of macro ‘MAT3’
10871 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10870:5: note: in expansion of macro ‘MAT3’
10870 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10866:27: warning: variable ‘nrow’ set but not used [-Wunused-but-set-variable]
10866 |     int inonz, iirow, nn, nrow, ncol, nonz, irow, n;
      |                           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:7229:16: warning: ‘d3bspline4’ defined but not used [-Wunused-function]
 7229 | VPUBLIC double d3bspline4(double x) {
      |                ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6684:15: warning: ‘markFrac’ defined but not used [-Wunused-function]
 6684 | VPRIVATE void markFrac(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3868:15: warning: ‘bcfl_mdh’ defined but not used [-Wunused-function]
 3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2828:15: warning: ‘bcCalcOrig’ defined but not used [-Wunused-function]
 2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) {
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2547:17: warning: ‘bcfl1sp’ defined but not used [-Wunused-function]
 2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge,
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1148:17: warning: ‘Vpmg_polarizEnergy’ defined but not used [-Wunused-function]
 1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee,
      |                 ^~~~~~~~~~~~~~~~~~
[  5%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c: In function ‘Vpmgp_size’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c:204:87: warning: unused variable ‘iretot’ [-Wunused-variable]
  204 |     int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot;
      |                                                                                       ^~~~~~
[  5%] Built target apbs_mg
[  6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c: In function ‘NOsh_setupCalcGEOFLOWMANUAL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2683:15: warning: variable ‘apolparm’ set but not used [-Wunused-but-set-variable]
 2683 |     APOLparm *apolparm = VNULL;
      |               ^~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c: In function ‘NOsh_parsePBAM’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3139:17: warning: ‘strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation]
 3139 |                 strncpy(parm->dxname, pbeparm->writestem[pbeparm->numwrite -1], CHR_MAXLEN);
      |                 ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c: In function ‘NOsh_parsePBSAM’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3268:17: warning: ‘strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation]
 3268 |                 strncpy(parm->dxname, pbeparm->writestem[pbeparm->numwrite - 1], CHR_MAXLEN);
      |                 ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c: In function ‘NOsh_parseInput’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1348:13: warning: ‘strncpy’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
 1348 |             strncpy(thee->apolname[thee->napol], tok, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1222:13: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
 1222 |             strncpy(thee->elecname[thee->nelec], tok, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:953:9: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  953 |         strncpy(thee->meshpath[thee->nmesh], tok, VMAX_ARGLEN);
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:918:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  918 |     strncpy(thee->chargepath[thee->ncharge], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:872:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  872 |     strncpy(thee->potpath[thee->npot], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:827:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  827 |     strncpy(thee->kappapath[thee->nkappa], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:772:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  772 |     strncpy(thee->dielXpath[thee->ndiel], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:776:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  776 |     strncpy(thee->dielYpath[thee->ndiel], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:780:5: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  780 |     strncpy(thee->dielZpath[thee->ndiel], tok, VMAX_ARGLEN);
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:723:13: warning: ‘strncpy’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  723 |             strncpy(thee->parmpath, tok, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:701:13: warning: ‘strncpy’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  701 |             strncpy(thee->parmpath, tok, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:659:9: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  659 |         strncpy(thee->molpath[thee->nmol], tok, VMAX_ARGLEN);
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:640:9: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  640 |         strncpy(thee->molpath[thee->nmol], tok, VMAX_ARGLEN);
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:621:9: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
  621 |         strncpy(thee->molpath[thee->nmol], tok, VMAX_ARGLEN);
      |         ^
[  8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o
[  9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o
[ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseRandorient’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:305:17: warning: unused variable ‘name’ [-Wunused-variable]
  305 |     const char* name = "randorient";
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parse3Dmap’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:373:10: warning: unused variable ‘tok’ [-Wunused-variable]
  373 |     char tok[VMAX_BUFSIZE];
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:372:17: warning: unused variable ‘name’ [-Wunused-variable]
  372 |     const char* name = "3dmap";
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseRunType’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:282:7: warning: ‘strncpy’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  282 |       strncpy(thee->runtype, tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseRunName’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:297:7: warning: ‘strncpy’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  297 |       strncpy(thee->runname, tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseUnits’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:344:7: warning: ‘strncpy’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  344 |       strncpy(thee->units, tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseGrid2D’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:400:7: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  400 |       strncpy(thee->grid2Dname[thee->grid2Dct], tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:408:7: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  408 |       strncpy(thee->grid2Dax[thee->grid2Dct], tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseTermcombine’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:452:7: warning: ‘strncpy’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  452 |       strncpy(thee->termcombine, tok, CHR_MAXLEN);
      |       ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseXYZ’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:656:8: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  656 |        strncpy(thee->xyzfil[mol][thee->xyzct[mol]], tok, CHR_MAXLEN);
      |        ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseDiff’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:500:8: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  500 |        strncpy(thee->moveType[molind], tok, CHR_MAXLEN);
      |        ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c: In function ‘PBAMparm_parseTerm’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:563:12: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  563 |            strncpy(thee->termnam[thee->termct], tok, CHR_MAXLEN);
      |            ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:573:11: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  573 |           strncpy(thee->confil[thee->confilct], tok, CHR_MAXLEN);
      |           ^
[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c: In function ‘PBSAMparm_ctor2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c:79:9: warning: unused variable ‘i’ [-Wunused-variable]
   79 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c: In function ‘PBSAMparm_parseMSMS’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c:183:13: warning: unused variable ‘td’ [-Wunused-variable]
  183 |         int td;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c: In function ‘PBSAMparm_parseSurf’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c:174:8: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  174 |        strncpy(thee->surffil[thee->surfct], tok, CHR_MAXLEN);
      |        ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c: In function ‘PBSAMparm_parseImat’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c:211:8: warning: ‘__strncpy_chk’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  211 |        strncpy(thee->imatfil[thee->imatct], tok, CHR_MAXLEN);
      |        ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c: In function ‘PBSAMparm_parseExp’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.c:226:8: warning: ‘strncpy’ output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
  226 |        strncpy(thee->expfil[thee->expct], tok, CHR_MAXLEN);
      |        ^
[ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c: In function ‘PBEparm_parseWRITE’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1163:9: warning: ‘__strncpy_chk’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
 1163 |         strncpy(thee->writestem[thee->numwrite], tok, VMAX_ARGLEN);
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c: In function ‘PBEparm_parseWRITEMAT’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1204:5: warning: ‘strncpy’ output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
 1204 |     strncpy(thee->writematstem, tok, VMAX_ARGLEN);
      |     ^
[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c: In function ‘BEMparm_ctor2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:79:9: warning: unused variable ‘i’ [-Wunused-variable]
   79 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c: In function ‘BEMparm_check’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:127:36: warning: unused variable ‘nlev’ [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                                    ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:127:26: warning: unused variable ‘tnlev’ [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:127:22: warning: unused variable ‘ti’ [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |                      ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:127:12: warning: unused variable ‘tdime’ [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:127:9: warning: unused variable ‘i’ [-Wunused-variable]
  127 |     int i, tdime[3], ti, tnlev[3], nlev;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c: In function ‘BEMparm_copy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:176:9: warning: unused variable ‘i’ [-Wunused-variable]
  176 |     int i;
      |         ^
[ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c: In function ‘GEOFLOWparm_ctor2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:79:9: warning: unused variable ‘i’ [-Wunused-variable]
   79 |     int i;
      |         ^
[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o
[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘VaccSurf_dtor’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:841:11: warning: variable ‘mem’ set but not used [-Wunused-but-set-variable]
  841 |     Vmem *mem;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_splineAccGradAtomNorm3’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1104:27: warning: variable ‘e5’ set but not used [-Wunused-but-set-variable]
 1104 |     double e, e2, e3, e4, e5;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_atomdSASA’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1338:12: warning: variable ‘ts’ set but not used [-Wunused-but-set-variable]
 1338 |     time_t ts;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1335:15: warning: variable ‘ref’ set but not used [-Wunused-but-set-variable]
 1335 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_totalAtomdSASA’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1395:15: warning: variable ‘ref’ set but not used [-Wunused-but-set-variable]
 1395 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1392:23: warning: variable ‘tRad’ set but not used [-Wunused-but-set-variable]
 1392 |     double *temp_Pos, tRad;
      |                       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1391:9: warning: variable ‘iatom’ set but not used [-Wunused-but-set-variable]
 1391 |     int iatom;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_totalAtomdSAV’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1454:15: warning: variable ‘ref’ set but not used [-Wunused-but-set-variable]
 1454 |     VaccSurf *ref;
      |               ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1451:23: warning: variable ‘tRad’ set but not used [-Wunused-but-set-variable]
 1451 |     double *temp_Pos, tRad;
      |                       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1450:9: warning: variable ‘iatom’ set but not used [-Wunused-but-set-variable]
 1450 |     int iatom;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_wcaEnergyAtom’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1584:9: warning: variable ‘npts’ set but not used [-Wunused-but-set-variable]
 1584 |     int npts[3];
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c: In function ‘Vacc_wcaForceAtom’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1807:12: warning: variable ‘ts’ set but not used [-Wunused-but-set-variable]
 1807 |     time_t ts;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1764:9: warning: variable ‘npts’ set but not used [-Wunused-but-set-variable]
 1764 |         npts[3],
      |         ^~~~
[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c: In function ‘Valist_readPQR’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:618:10: warning: unused variable ‘chs’ [-Wunused-variable]
  618 |     char chs[VMAX_BUFSIZE];
      |          ^~~
[ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o
[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o
[ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o
[ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o
[ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o
[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.c: In function ‘Vparam_readXMLFile’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.c:412:22: warning: ‘natoms’ may be used uninitialized [-Wmaybe-uninitialized]
  412 |           for (i=0; i<natoms; i++) {
      |                     ~^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.c:309:18: note: ‘natoms’ was declared here
  309 |     int i, ires, natoms, nalloc, ralloc;
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.c:416:11: warning: ‘nalloc’ may be used uninitialized [-Wmaybe-uninitialized]
  416 |           Vmem_free(thee->vmem, nalloc, sizeof(Vparam_AtomData), (void **)&(atoms));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.c:309:26: note: ‘nalloc’ was declared here
  309 |     int i, ires, natoms, nalloc, ralloc;
      |                          ^~~~~~
[ 26%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c: In function ‘Vgreen_coulomb_direct’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:229:31: warning: unused variable ‘fz’ [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:229:27: warning: unused variable ‘fy’ [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:229:23: warning: unused variable ‘fx’ [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                       ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:229:16: warning: unused variable ‘qtemp’ [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:229:13: warning: unused variable ‘q’ [-Wunused-variable]
  229 |     double *q, qtemp, fx, fy, fz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c: In function ‘Vgreen_coulomb’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:264:9: warning: unused variable ‘iatom’ [-Wunused-variable]
  264 |     int iatom, ipos;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:263:31: warning: unused variable ‘fz’ [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:263:27: warning: unused variable ‘fy’ [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:263:23: warning: unused variable ‘fx’ [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                       ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:263:16: warning: unused variable ‘qtemp’ [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:263:13: warning: unused variable ‘q’ [-Wunused-variable]
  263 |     double *q, qtemp, fx, fy, fz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:45: warning: unused variable ‘scale’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                             ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:41: warning: unused variable ‘dz’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:37: warning: unused variable ‘dy’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                     ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:33: warning: unused variable ‘dx’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                                 ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:27: warning: unused variable ‘dist’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:19: warning: unused variable ‘charge’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |                   ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:262:13: warning: unused variable ‘apos’ [-Wunused-variable]
  262 |     double *apos, charge, dist, dx, dy, dz, scale;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:261:12: warning: unused variable ‘atom’ [-Wunused-variable]
  261 |     Vatom *atom;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c: In function ‘Vgreen_coulombD_direct’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:316:16: warning: unused variable ‘qtemp’ [-Wunused-variable]
  316 |     double *q, qtemp;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:316:13: warning: unused variable ‘q’ [-Wunused-variable]
  316 |     double *q, qtemp;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c: In function ‘Vgreen_coulombD’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:368:9: warning: unused variable ‘iatom’ [-Wunused-variable]
  368 |     int iatom, ipos;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:367:16: warning: unused variable ‘qtemp’ [-Wunused-variable]
  367 |     double *q, qtemp;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:367:13: warning: unused variable ‘q’ [-Wunused-variable]
  367 |     double *q, qtemp;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:60: warning: unused variable ‘scale’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:56: warning: unused variable ‘dx’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                        ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:52: warning: unused variable ‘dz’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                    ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:48: warning: unused variable ‘dy’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                                ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:40: warning: unused variable ‘idist3’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                        ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:33: warning: unused variable ‘dist2’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                                 ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:27: warning: unused variable ‘dist’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:19: warning: unused variable ‘charge’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |                   ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:366:13: warning: unused variable ‘apos’ [-Wunused-variable]
  366 |     double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:365:12: warning: unused variable ‘atom’ [-Wunused-variable]
  365 |     Vatom *atom;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:525:14: warning: ‘treecalc’ defined but not used [-Wunused-function]
  525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar,
      |              ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:505:14: warning: ‘treecleanup’ defined but not used [-Wunused-function]
  505 | VPRIVATE int treecleanup(Vgreen *thee) {
      |              ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:425:14: warning: ‘treesetup’ defined but not used [-Wunused-function]
  425 | VPRIVATE int treesetup(Vgreen *thee) {
      |              ^~~~~~~~~
[ 26%] Built target apbs_generic
[ 27%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c: In function ‘VbuildA’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:66:5: note: in expansion of macro ‘MAT2’
   66 |     MAT2(ac, *nx * *ny * *nz, 14);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c: In function ‘VbuildA_fv’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gzcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:167:5: note: in expansion of macro ‘MAT3’
  167 |     MAT3(gzcf, *nx, *ny,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gycf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:166:5: note: in expansion of macro ‘MAT3’
  166 |     MAT3(gycf, *nx, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gxcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:165:5: note: in expansion of macro ‘MAT3’
  165 |     MAT3(gxcf, *ny, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:164:5: note: in expansion of macro ‘MAT3’
  164 |     MAT3(  oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:163:5: note: in expansion of macro ‘MAT3’
  163 |     MAT3(  oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:162:5: note: in expansion of macro ‘MAT3’
  162 |     MAT3(  uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a3cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:161:5: note: in expansion of macro ‘MAT3’
  161 |     MAT3(a3cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a2cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:160:5: note: in expansion of macro ‘MAT3’
  160 |     MAT3(a2cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a1cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:159:5: note: in expansion of macro ‘MAT3’
  159 |     MAT3(a1cf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:158:5: note: in expansion of macro ‘MAT3’
  158 |     MAT3(  oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_ccf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:157:5: note: in expansion of macro ‘MAT3’
  157 |     MAT3( ccf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:156:5: note: in expansion of macro ‘MAT3’
  156 |     MAT3(  cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:155:5: note: in expansion of macro ‘MAT3’
  155 |     MAT3( fcf, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c:154:5: note: in expansion of macro ‘MAT3’
  154 |     MAT3(  fc, *nx, *ny, *nz);
      |     ^~~~
[ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c: In function ‘Vbuildband’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:65:5: note: in expansion of macro ‘MAT2’
   65 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c: In function ‘Vbuildband1_7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:133:5: note: in expansion of macro ‘MAT3’
  133 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:132:5: note: in expansion of macro ‘MAT3’
  132 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:131:5: note: in expansion of macro ‘MAT3’
  131 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:130:5: note: in expansion of macro ‘MAT3’
  130 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_acB’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:128:5: note: in expansion of macro ‘MAT2’
  128 |     MAT2(acB, *lda, *ny-1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c: In function ‘Vbuildband1_27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:213:5: note: in expansion of macro ‘MAT3’
  213 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:212:5: note: in expansion of macro ‘MAT3’
  212 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:211:5: note: in expansion of macro ‘MAT3’
  211 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:210:5: note: in expansion of macro ‘MAT3’
  210 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:208:5: note: in expansion of macro ‘MAT3’
  208 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:207:5: note: in expansion of macro ‘MAT3’
  207 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:206:5: note: in expansion of macro ‘MAT3’
  206 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:205:5: note: in expansion of macro ‘MAT3’
  205 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:203:5: note: in expansion of macro ‘MAT3’
  203 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:202:5: note: in expansion of macro ‘MAT3’
  202 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:200:5: note: in expansion of macro ‘MAT3’
  200 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:199:5: note: in expansion of macro ‘MAT3’
  199 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:198:5: note: in expansion of macro ‘MAT3’
  198 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:197:5: note: in expansion of macro ‘MAT3’
  197 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_acB’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c:195:5: note: in expansion of macro ‘MAT2’
  195 |     MAT2(acB, *lda, *ny-1);
      |     ^~~~
[ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c: In function ‘VbuildG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:64:5: note: in expansion of macro ‘MAT2’
   64 |     MAT2(  ac, *nxc * *nyc * *nzc, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_acFF’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:63:5: note: in expansion of macro ‘MAT2’
   63 |     MAT2(acFF, *nxf * *nyf * *nzf, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pcFF’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:62:5: note: in expansion of macro ‘MAT2’
   62 |     MAT2(pcFF, *nxc * *nyc * *nzc, 27);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c: In function ‘VbuildG_1’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:216:5: note: in expansion of macro ‘MAT3’
  216 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:215:5: note: in expansion of macro ‘MAT3’
  215 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:214:5: note: in expansion of macro ‘MAT3’
  214 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:213:5: note: in expansion of macro ‘MAT3’
  213 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:212:5: note: in expansion of macro ‘MAT3’
  212 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:211:5: note: in expansion of macro ‘MAT3’
  211 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:210:5: note: in expansion of macro ‘MAT3’
  210 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:209:5: note: in expansion of macro ‘MAT3’
  209 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:208:5: note: in expansion of macro ‘MAT3’
  208 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:206:5: note: in expansion of macro ‘MAT3’
  206 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:205:5: note: in expansion of macro ‘MAT3’
  205 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:204:5: note: in expansion of macro ‘MAT3’
  204 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:203:5: note: in expansion of macro ‘MAT3’
  203 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:202:5: note: in expansion of macro ‘MAT3’
  202 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:201:5: note: in expansion of macro ‘MAT3’
  201 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:200:5: note: in expansion of macro ‘MAT3’
  200 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:199:5: note: in expansion of macro ‘MAT3’
  199 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:198:5: note: in expansion of macro ‘MAT3’
  198 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:196:5: note: in expansion of macro ‘MAT3’
  196 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:195:5: note: in expansion of macro ‘MAT3’
  195 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:194:5: note: in expansion of macro ‘MAT3’
  194 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:193:5: note: in expansion of macro ‘MAT3’
  193 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:192:5: note: in expansion of macro ‘MAT3’
  192 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:191:5: note: in expansion of macro ‘MAT3’
  191 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:190:5: note: in expansion of macro ‘MAT3’
  190 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:189:5: note: in expansion of macro ‘MAT3’
  189 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:188:5: note: in expansion of macro ‘MAT3’
  188 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:186:5: note: in expansion of macro ‘MAT3’
  186 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:185:5: note: in expansion of macro ‘MAT3’
  185 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:184:5: note: in expansion of macro ‘MAT3’
  184 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:183:5: note: in expansion of macro ‘MAT3’
  183 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:182:5: note: in expansion of macro ‘MAT3’
  182 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:181:5: note: in expansion of macro ‘MAT3’
  181 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:180:5: note: in expansion of macro ‘MAT3’
  180 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:179:5: note: in expansion of macro ‘MAT3’
  179 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:177:5: note: in expansion of macro ‘MAT3’
  177 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:176:5: note: in expansion of macro ‘MAT3’
  176 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:174:5: note: in expansion of macro ‘MAT3’
  174 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:172:5: note: in expansion of macro ‘MAT3’
  172 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:171:5: note: in expansion of macro ‘MAT3’
  171 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:170:5: note: in expansion of macro ‘MAT3’
  170 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:168:5: note: in expansion of macro ‘MAT3’
  168 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:164:21: warning: variable ‘nzm1’ set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:164:15: warning: variable ‘nym1’ set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:164:9: warning: variable ‘nxm1’ set but not used [-Wunused-but-set-variable]
  164 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:163:33: warning: variable ‘kkm1’ set but not used [-Wunused-but-set-variable]
  163 |     int iim1, iip1, jjm1, jjp1, kkm1, kkp1;
      |                                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c: In function ‘VbuildG_7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:532:5: note: in expansion of macro ‘MAT3’
  532 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:531:5: note: in expansion of macro ‘MAT3’
  531 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:530:5: note: in expansion of macro ‘MAT3’
  530 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:529:5: note: in expansion of macro ‘MAT3’
  529 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:528:5: note: in expansion of macro ‘MAT3’
  528 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:527:5: note: in expansion of macro ‘MAT3’
  527 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:526:5: note: in expansion of macro ‘MAT3’
  526 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:525:5: note: in expansion of macro ‘MAT3’
  525 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:524:5: note: in expansion of macro ‘MAT3’
  524 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:522:5: note: in expansion of macro ‘MAT3’
  522 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:521:5: note: in expansion of macro ‘MAT3’
  521 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:520:5: note: in expansion of macro ‘MAT3’
  520 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:519:5: note: in expansion of macro ‘MAT3’
  519 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:518:5: note: in expansion of macro ‘MAT3’
  518 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:517:5: note: in expansion of macro ‘MAT3’
  517 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:516:5: note: in expansion of macro ‘MAT3’
  516 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:515:5: note: in expansion of macro ‘MAT3’
  515 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:514:5: note: in expansion of macro ‘MAT3’
  514 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:512:5: note: in expansion of macro ‘MAT3’
  512 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:511:5: note: in expansion of macro ‘MAT3’
  511 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:510:5: note: in expansion of macro ‘MAT3’
  510 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:509:5: note: in expansion of macro ‘MAT3’
  509 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:508:5: note: in expansion of macro ‘MAT3’
  508 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:507:5: note: in expansion of macro ‘MAT3’
  507 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:506:5: note: in expansion of macro ‘MAT3’
  506 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:505:5: note: in expansion of macro ‘MAT3’
  505 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:504:5: note: in expansion of macro ‘MAT3’
  504 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:502:5: note: in expansion of macro ‘MAT3’
  502 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:501:5: note: in expansion of macro ‘MAT3’
  501 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:500:5: note: in expansion of macro ‘MAT3’
  500 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:499:5: note: in expansion of macro ‘MAT3’
  499 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:498:5: note: in expansion of macro ‘MAT3’
  498 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:497:5: note: in expansion of macro ‘MAT3’
  497 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:496:5: note: in expansion of macro ‘MAT3’
  496 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:495:5: note: in expansion of macro ‘MAT3’
  495 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:494:5: note: in expansion of macro ‘MAT3’
  494 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:492:5: note: in expansion of macro ‘MAT3’
  492 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:491:5: note: in expansion of macro ‘MAT3’
  491 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:490:5: note: in expansion of macro ‘MAT3’
  490 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:489:5: note: in expansion of macro ‘MAT3’
  489 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:488:5: note: in expansion of macro ‘MAT3’
  488 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:486:5: note: in expansion of macro ‘MAT3’
  486 |     MAT3(  uC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:484:5: note: in expansion of macro ‘MAT3’
  484 |     MAT3(  oN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:483:5: note: in expansion of macro ‘MAT3’
  483 |     MAT3(  oE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:482:5: note: in expansion of macro ‘MAT3’
  482 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:473:21: warning: variable ‘nzm1’ set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:473:15: warning: variable ‘nym1’ set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:473:9: warning: variable ‘nxm1’ set but not used [-Wunused-but-set-variable]
  473 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:472:9: warning: variable ‘kkm1’ set but not used [-Wunused-but-set-variable]
  472 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:469:28: warning: variable ‘kp2’ set but not used [-Wunused-but-set-variable]
  469 |     int  km1,  kp1,  km2,  kp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:469:22: warning: variable ‘km2’ set but not used [-Wunused-but-set-variable]
  469 |     int  km1,  kp1,  km2,  kp2;
      |                      ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:468:28: warning: variable ‘jp2’ set but not used [-Wunused-but-set-variable]
  468 |     int  jm1,  jp1,  jm2,  jp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:467:28: warning: variable ‘ip2’ set but not used [-Wunused-but-set-variable]
  467 |     int  im1,  ip1,  im2,  ip2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c: In function ‘VbuildG_27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1380:5: note: in expansion of macro ‘MAT3’
 1380 |     MAT3(dPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1379:5: note: in expansion of macro ‘MAT3’
 1379 |     MAT3(dPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1378:5: note: in expansion of macro ‘MAT3’
 1378 |     MAT3(dPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1377:5: note: in expansion of macro ‘MAT3’
 1377 |     MAT3(dPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1376:5: note: in expansion of macro ‘MAT3’
 1376 |     MAT3( dPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1375:5: note: in expansion of macro ‘MAT3’
 1375 |     MAT3( dPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1374:5: note: in expansion of macro ‘MAT3’
 1374 |     MAT3( dPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1373:5: note: in expansion of macro ‘MAT3’
 1373 |     MAT3( dPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1372:5: note: in expansion of macro ‘MAT3’
 1372 |     MAT3( dPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1370:5: note: in expansion of macro ‘MAT3’
 1370 |     MAT3(uPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1369:5: note: in expansion of macro ‘MAT3’
 1369 |     MAT3(uPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1368:5: note: in expansion of macro ‘MAT3’
 1368 |     MAT3(uPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1367:5: note: in expansion of macro ‘MAT3’
 1367 |     MAT3(uPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1366:5: note: in expansion of macro ‘MAT3’
 1366 |     MAT3( uPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1365:5: note: in expansion of macro ‘MAT3’
 1365 |     MAT3( uPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1364:5: note: in expansion of macro ‘MAT3’
 1364 |     MAT3( uPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1363:5: note: in expansion of macro ‘MAT3’
 1363 |     MAT3( uPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1362:5: note: in expansion of macro ‘MAT3’
 1362 |     MAT3( uPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1360:5: note: in expansion of macro ‘MAT3’
 1360 |     MAT3(oPSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1359:5: note: in expansion of macro ‘MAT3’
 1359 |     MAT3(oPSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1358:5: note: in expansion of macro ‘MAT3’
 1358 |     MAT3(oPNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1357:5: note: in expansion of macro ‘MAT3’
 1357 |     MAT3(oPNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1356:5: note: in expansion of macro ‘MAT3’
 1356 |     MAT3( oPW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1355:5: note: in expansion of macro ‘MAT3’
 1355 |     MAT3( oPE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1354:5: note: in expansion of macro ‘MAT3’
 1354 |     MAT3( oPS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1353:5: note: in expansion of macro ‘MAT3’
 1353 |     MAT3( oPN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1352:5: note: in expansion of macro ‘MAT3’
 1352 |     MAT3( oPC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1350:5: note: in expansion of macro ‘MAT3’
 1350 |     MAT3(XuSW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1349:5: note: in expansion of macro ‘MAT3’
 1349 |     MAT3(XuSE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1348:5: note: in expansion of macro ‘MAT3’
 1348 |     MAT3(XuNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1347:5: note: in expansion of macro ‘MAT3’
 1347 |     MAT3(XuNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1346:5: note: in expansion of macro ‘MAT3’
 1346 |     MAT3( XuS, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1345:5: note: in expansion of macro ‘MAT3’
 1345 |     MAT3( XuN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1344:5: note: in expansion of macro ‘MAT3’
 1344 |     MAT3( XuW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1343:5: note: in expansion of macro ‘MAT3’
 1343 |     MAT3( XuE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XuC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1342:5: note: in expansion of macro ‘MAT3’
 1342 |     MAT3( XuC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1340:5: note: in expansion of macro ‘MAT3’
 1340 |     MAT3(XoNW, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1339:5: note: in expansion of macro ‘MAT3’
 1339 |     MAT3(XoNE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1338:5: note: in expansion of macro ‘MAT3’
 1338 |     MAT3( XoN, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1337:5: note: in expansion of macro ‘MAT3’
 1337 |     MAT3( XoE, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_XoC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1336:5: note: in expansion of macro ‘MAT3’
 1336 |     MAT3( XoC, *nx, *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1334:5: note: in expansion of macro ‘MAT3’
 1334 |     MAT3( uSW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1333:5: note: in expansion of macro ‘MAT3’
 1333 |     MAT3( uSE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1332:5: note: in expansion of macro ‘MAT3’
 1332 |     MAT3( uNW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1331:5: note: in expansion of macro ‘MAT3’
 1331 |     MAT3( uNE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1330:5: note: in expansion of macro ‘MAT3’
 1330 |     MAT3(  uS, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1329:5: note: in expansion of macro ‘MAT3’
 1329 |     MAT3(  uN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1328:5: note: in expansion of macro ‘MAT3’
 1328 |     MAT3(  uW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1327:5: note: in expansion of macro ‘MAT3’
 1327 |     MAT3(  uE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1326:5: note: in expansion of macro ‘MAT3’
 1326 |     MAT3(  uC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1324:5: note: in expansion of macro ‘MAT3’
 1324 |     MAT3( oNW, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1323:5: note: in expansion of macro ‘MAT3’
 1323 |     MAT3( oNE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1322:5: note: in expansion of macro ‘MAT3’
 1322 |     MAT3(  oN, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1321:5: note: in expansion of macro ‘MAT3’
 1321 |     MAT3(  oE, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1320:5: note: in expansion of macro ‘MAT3’
 1320 |     MAT3(  oC, *nxf, *nyf,  *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1277:21: warning: variable ‘nzm1’ set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |                     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1277:15: warning: variable ‘nym1’ set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1277:9: warning: variable ‘nxm1’ set but not used [-Wunused-but-set-variable]
 1277 |     int nxm1, nym1, nzm1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1276:9: warning: variable ‘kkm1’ set but not used [-Wunused-but-set-variable]
 1276 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1273:28: warning: variable ‘kp2’ set but not used [-Wunused-but-set-variable]
 1273 |     int  km1,  kp1,  km2,  kp2;
      |                            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c:1273:22: warning: variable ‘km2’ set but not used [-Wunused-but-set-variable]
 1273 |     int  km1,  kp1,  km2,  kp2;
      |                      ^~~
[ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildP’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:67:5: note: in expansion of macro ‘MAT2’
   67 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:66:5: note: in expansion of macro ‘MAT2’
   66 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildP_trilin’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:101:5: note: in expansion of macro ‘MAT2’
  101 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildPb_trilin’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:163:5: note: in expansion of macro ‘MAT3’
  163 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:162:5: note: in expansion of macro ‘MAT3’
  162 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:161:5: note: in expansion of macro ‘MAT3’
  161 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:160:5: note: in expansion of macro ‘MAT3’
  160 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:158:5: note: in expansion of macro ‘MAT3’
  158 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:157:5: note: in expansion of macro ‘MAT3’
  157 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:156:5: note: in expansion of macro ‘MAT3’
  156 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:155:5: note: in expansion of macro ‘MAT3’
  155 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:154:5: note: in expansion of macro ‘MAT3’
  154 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:152:5: note: in expansion of macro ‘MAT3’
  152 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:151:5: note: in expansion of macro ‘MAT3’
  151 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:150:5: note: in expansion of macro ‘MAT3’
  150 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:149:5: note: in expansion of macro ‘MAT3’
  149 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:147:5: note: in expansion of macro ‘MAT3’
  147 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:146:5: note: in expansion of macro ‘MAT3’
  146 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:145:5: note: in expansion of macro ‘MAT3’
  145 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:144:5: note: in expansion of macro ‘MAT3’
  144 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:143:5: note: in expansion of macro ‘MAT3’
  143 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:141:5: note: in expansion of macro ‘MAT3’
  141 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:140:5: note: in expansion of macro ‘MAT3’
  140 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:139:5: note: in expansion of macro ‘MAT3’
  139 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:138:5: note: in expansion of macro ‘MAT3’
  138 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:136:5: note: in expansion of macro ‘MAT3’
  136 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:135:5: note: in expansion of macro ‘MAT3’
  135 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:134:5: note: in expansion of macro ‘MAT3’
  134 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:133:5: note: in expansion of macro ‘MAT3’
  133 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:132:5: note: in expansion of macro ‘MAT3’
  132 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildP_op7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:212:5: note: in expansion of macro ‘MAT2’
  212 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:211:5: note: in expansion of macro ‘MAT2’
  211 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildPb_op7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:287:5: note: in expansion of macro ‘MAT3’
  287 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:286:5: note: in expansion of macro ‘MAT3’
  286 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:285:5: note: in expansion of macro ‘MAT3’
  285 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:284:5: note: in expansion of macro ‘MAT3’
  284 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:283:5: note: in expansion of macro ‘MAT3’
  283 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:282:5: note: in expansion of macro ‘MAT3’
  282 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:281:5: note: in expansion of macro ‘MAT3’
  281 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:280:5: note: in expansion of macro ‘MAT3’
  280 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:279:5: note: in expansion of macro ‘MAT3’
  279 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:278:5: note: in expansion of macro ‘MAT3’
  278 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:277:5: note: in expansion of macro ‘MAT3’
  277 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:276:5: note: in expansion of macro ‘MAT3’
  276 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:275:5: note: in expansion of macro ‘MAT3’
  275 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:274:5: note: in expansion of macro ‘MAT3’
  274 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:273:5: note: in expansion of macro ‘MAT3’
  273 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:272:5: note: in expansion of macro ‘MAT3’
  272 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:271:5: note: in expansion of macro ‘MAT3’
  271 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:270:5: note: in expansion of macro ‘MAT3’
  270 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:269:5: note: in expansion of macro ‘MAT3’
  269 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:268:5: note: in expansion of macro ‘MAT3’
  268 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:267:5: note: in expansion of macro ‘MAT3’
  267 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:266:5: note: in expansion of macro ‘MAT3’
  266 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:265:5: note: in expansion of macro ‘MAT3’
  265 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:264:5: note: in expansion of macro ‘MAT3’
  264 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:263:5: note: in expansion of macro ‘MAT3’
  263 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:262:5: note: in expansion of macro ‘MAT3’
  262 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:261:5: note: in expansion of macro ‘MAT3’
  261 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:260:5: note: in expansion of macro ‘MAT3’
  260 |     MAT3(  uC, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:259:5: note: in expansion of macro ‘MAT3’
  259 |     MAT3(  oN, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:258:5: note: in expansion of macro ‘MAT3’
  258 |     MAT3(  oE, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:257:5: note: in expansion of macro ‘MAT3’
  257 |     MAT3(  oC, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:255:32: warning: variable ‘eighth’ set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                                ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:255:23: warning: variable ‘quarter’ set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                       ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:255:17: warning: variable ‘half’ set but not used [-Wunused-but-set-variable]
  255 |     double won, half, quarter, eighth;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:253:15: warning: variable ‘kkp1’ set but not used [-Wunused-but-set-variable]
  253 |     int kkm1, kkp1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:253:9: warning: variable ‘kkm1’ set but not used [-Wunused-but-set-variable]
  253 |     int kkm1, kkp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:252:15: warning: variable ‘jjp1’ set but not used [-Wunused-but-set-variable]
  252 |     int jjm1, jjp1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:252:9: warning: variable ‘jjm1’ set but not used [-Wunused-but-set-variable]
  252 |     int jjm1, jjp1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:251:15: warning: variable ‘iip1’ set but not used [-Wunused-but-set-variable]
  251 |     int iim1, iip1;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:251:9: warning: variable ‘iim1’ set but not used [-Wunused-but-set-variable]
  251 |     int iim1, iip1;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:250:16: warning: variable ‘kp2’ set but not used [-Wunused-but-set-variable]
  250 |     int  km2,  kp2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:250:10: warning: variable ‘km2’ set but not used [-Wunused-but-set-variable]
  250 |     int  km2,  kp2;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:248:16: warning: variable ‘jp2’ set but not used [-Wunused-but-set-variable]
  248 |     int  jm2,  jp2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:248:10: warning: variable ‘jm2’ set but not used [-Wunused-but-set-variable]
  248 |     int  jm2,  jp2;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:246:16: warning: variable ‘ip2’ set but not used [-Wunused-but-set-variable]
  246 |     int  im2,  ip2;
      |                ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:246:10: warning: variable ‘im2’ set but not used [-Wunused-but-set-variable]
  246 |     int  im2,  ip2;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildP_op27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:728:5: note: in expansion of macro ‘MAT2’
  728 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:727:5: note: in expansion of macro ‘MAT2’
  727 |     MAT2(ac, *nxf * *nyf * *nzf, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c: In function ‘VbuildPb_op27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:818:7: note: in expansion of macro ‘MAT3’
  818 |       MAT3(dPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:817:7: note: in expansion of macro ‘MAT3’
  817 |       MAT3(dPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:816:7: note: in expansion of macro ‘MAT3’
  816 |       MAT3(dPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:815:7: note: in expansion of macro ‘MAT3’
  815 |       MAT3(dPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:814:7: note: in expansion of macro ‘MAT3’
  814 |       MAT3( dPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:813:7: note: in expansion of macro ‘MAT3’
  813 |       MAT3( dPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:812:7: note: in expansion of macro ‘MAT3’
  812 |       MAT3( dPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:811:7: note: in expansion of macro ‘MAT3’
  811 |       MAT3( dPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:810:7: note: in expansion of macro ‘MAT3’
  810 |       MAT3( dPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:809:7: note: in expansion of macro ‘MAT3’
  809 |       MAT3(uPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:808:7: note: in expansion of macro ‘MAT3’
  808 |       MAT3(uPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:807:7: note: in expansion of macro ‘MAT3’
  807 |       MAT3(uPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:806:7: note: in expansion of macro ‘MAT3’
  806 |       MAT3(uPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:805:7: note: in expansion of macro ‘MAT3’
  805 |       MAT3( uPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:804:7: note: in expansion of macro ‘MAT3’
  804 |       MAT3( uPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:803:7: note: in expansion of macro ‘MAT3’
  803 |       MAT3( uPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:802:7: note: in expansion of macro ‘MAT3’
  802 |       MAT3( uPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:801:7: note: in expansion of macro ‘MAT3’
  801 |       MAT3( uPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:800:7: note: in expansion of macro ‘MAT3’
  800 |       MAT3(oPSW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:799:7: note: in expansion of macro ‘MAT3’
  799 |       MAT3(oPSE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:798:7: note: in expansion of macro ‘MAT3’
  798 |       MAT3(oPNW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:797:7: note: in expansion of macro ‘MAT3’
  797 |       MAT3(oPNE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:796:7: note: in expansion of macro ‘MAT3’
  796 |       MAT3( oPW, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:795:7: note: in expansion of macro ‘MAT3’
  795 |       MAT3( oPE, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:794:7: note: in expansion of macro ‘MAT3’
  794 |       MAT3( oPS, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:793:7: note: in expansion of macro ‘MAT3’
  793 |       MAT3( oPN, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:792:7: note: in expansion of macro ‘MAT3’
  792 |       MAT3( oPC, *nxc, *nyc, *nzc);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:791:7: note: in expansion of macro ‘MAT3’
  791 |       MAT3( uSW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:790:7: note: in expansion of macro ‘MAT3’
  790 |       MAT3( uSE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:789:7: note: in expansion of macro ‘MAT3’
  789 |       MAT3( uNW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:788:7: note: in expansion of macro ‘MAT3’
  788 |       MAT3( uNE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:787:7: note: in expansion of macro ‘MAT3’
  787 |       MAT3(  uS, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:786:7: note: in expansion of macro ‘MAT3’
  786 |       MAT3(  uN, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:785:7: note: in expansion of macro ‘MAT3’
  785 |       MAT3(  uW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:784:7: note: in expansion of macro ‘MAT3’
  784 |       MAT3(  uE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:783:7: note: in expansion of macro ‘MAT3’
  783 |       MAT3( oNW, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:782:7: note: in expansion of macro ‘MAT3’
  782 |       MAT3( oNE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:781:7: note: in expansion of macro ‘MAT3’
  781 |       MAT3(  uC, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:780:7: note: in expansion of macro ‘MAT3’
  780 |       MAT3(  oN, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:779:7: note: in expansion of macro ‘MAT3’
  779 |       MAT3(  oE, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:778:7: note: in expansion of macro ‘MAT3’
  778 |       MAT3(  oC, *nxf, *nyf, *nzf);
      |       ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:776:34: warning: variable ‘eighth’ set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:776:25: warning: variable ‘quarter’ set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                         ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:776:19: warning: variable ‘half’ set but not used [-Wunused-but-set-variable]
  776 |       double won, half, quarter, eighth;
      |                   ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:774:17: warning: variable ‘kkp1’ set but not used [-Wunused-but-set-variable]
  774 |       int kkm1, kkp1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:774:11: warning: variable ‘kkm1’ set but not used [-Wunused-but-set-variable]
  774 |       int kkm1, kkp1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:773:17: warning: variable ‘jjp1’ set but not used [-Wunused-but-set-variable]
  773 |       int jjm1, jjp1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:773:11: warning: variable ‘jjm1’ set but not used [-Wunused-but-set-variable]
  773 |       int jjm1, jjp1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:772:17: warning: variable ‘iip1’ set but not used [-Wunused-but-set-variable]
  772 |       int iim1, iip1;
      |                 ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:772:11: warning: variable ‘iim1’ set but not used [-Wunused-but-set-variable]
  772 |       int iim1, iip1;
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:771:18: warning: variable ‘kp2’ set but not used [-Wunused-but-set-variable]
  771 |       int  km2,  kp2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:771:12: warning: variable ‘km2’ set but not used [-Wunused-but-set-variable]
  771 |       int  km2,  kp2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:769:18: warning: variable ‘jp2’ set but not used [-Wunused-but-set-variable]
  769 |       int  jm2,  jp2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:769:12: warning: variable ‘jm2’ set but not used [-Wunused-but-set-variable]
  769 |       int  jm2,  jp2;
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:767:18: warning: variable ‘ip2’ set but not used [-Wunused-but-set-variable]
  767 |       int  im2,  ip2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c:767:12: warning: variable ‘im2’ set but not used [-Wunused-but-set-variable]
  767 |       int  im2,  ip2;
      |            ^~~
[ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.c: In function ‘Vcghs’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.c:99:24: warning: ‘rhok1’ may be used uninitialized [-Wmaybe-uninitialized]
   99 |           beta = rhok2 / rhok1;
      |                  ~~~~~~^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.c:66:12: note: ‘rhok1’ was declared here
   66 |     double rhok1, rhok2, alpha, beta;
      |            ^~~~~
[ 33%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c: In function ‘Vgsrb’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:67:5: note: in expansion of macro ‘MAT2’
   67 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c: In function ‘Vgsrb7x’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:116:5: note: in expansion of macro ‘MAT3’
  116 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:115:5: note: in expansion of macro ‘MAT3’
  115 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:114:5: note: in expansion of macro ‘MAT3’
  114 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:113:5: note: in expansion of macro ‘MAT3’
  113 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro ‘MAT3’
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_r’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro ‘MAT3’
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_r’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:111:5: note: in expansion of macro ‘MAT3’
  111 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w2’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro ‘MAT3’
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_w2’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro ‘MAT3’
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_w2’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:110:5: note: in expansion of macro ‘MAT3’
  110 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro ‘MAT3’
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_w1’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro ‘MAT3’
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_w1’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:109:5: note: in expansion of macro ‘MAT3’
  109 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:108:5: note: in expansion of macro ‘MAT3’
  108 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:107:5: note: in expansion of macro ‘MAT3’
  107 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:106:5: note: in expansion of macro ‘MAT3’
  106 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c: In function ‘Vgsrb27x’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:208:5: note: in expansion of macro ‘MAT3’
  208 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:207:5: note: in expansion of macro ‘MAT3’
  207 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:206:5: note: in expansion of macro ‘MAT3’
  206 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:205:5: note: in expansion of macro ‘MAT3’
  205 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:204:5: note: in expansion of macro ‘MAT3’
  204 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:203:5: note: in expansion of macro ‘MAT3’
  203 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:202:5: note: in expansion of macro ‘MAT3’
  202 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:201:5: note: in expansion of macro ‘MAT3’
  201 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:199:5: note: in expansion of macro ‘MAT3’
  199 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:198:5: note: in expansion of macro ‘MAT3’
  198 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:196:5: note: in expansion of macro ‘MAT3’
  196 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:195:5: note: in expansion of macro ‘MAT3’
  195 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:194:5: note: in expansion of macro ‘MAT3’
  194 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:193:5: note: in expansion of macro ‘MAT3’
  193 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro ‘MAT3’
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_r’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro ‘MAT3’
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_r’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:191:5: note: in expansion of macro ‘MAT3’
  191 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w2’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro ‘MAT3’
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_w2’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro ‘MAT3’
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_w2’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:190:5: note: in expansion of macro ‘MAT3’
  190 |     MAT3(w2, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro ‘MAT3’
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_w1’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro ‘MAT3’
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_w1’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:189:5: note: in expansion of macro ‘MAT3’
  189 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:188:5: note: in expansion of macro ‘MAT3’
  188 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:187:5: note: in expansion of macro ‘MAT3’
  187 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:186:5: note: in expansion of macro ‘MAT3’
  186 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:182:9: warning: variable ‘istep’ set but not used [-Wunused-but-set-variable]
  182 |     int istep;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:180:17: warning: variable ‘k2’ set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:180:13: warning: variable ‘j2’ set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:180:9: warning: variable ‘i2’ set but not used [-Wunused-but-set-variable]
  180 |     int i2, j2, k2;
      |         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:179:17: warning: variable ‘k1’ set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |                 ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:179:13: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c:179:9: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable]
  179 |     int i1, j1, k1;
      |         ^~
[ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.h:55,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmatvec7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:87:5: note: in expansion of macro ‘MAT2’
   87 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmatvec7_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:112:5: note: in expansion of macro ‘MAT3’
  112 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:111:5: note: in expansion of macro ‘MAT3’
  111 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:110:5: note: in expansion of macro ‘MAT3’
  110 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:109:5: note: in expansion of macro ‘MAT3’
  109 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:108:5: note: in expansion of macro ‘MAT3’
  108 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:107:5: note: in expansion of macro ‘MAT3’
  107 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:106:5: note: in expansion of macro ‘MAT3’
  106 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmatvec27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:139:5: note: in expansion of macro ‘MAT2’
  139 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmatvec27_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:184:5: note: in expansion of macro ‘MAT3’
  184 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:183:5: note: in expansion of macro ‘MAT3’
  183 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:182:5: note: in expansion of macro ‘MAT3’
  182 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:181:5: note: in expansion of macro ‘MAT3’
  181 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:180:5: note: in expansion of macro ‘MAT3’
  180 |     MAT3(uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:179:5: note: in expansion of macro ‘MAT3’
  179 |     MAT3(uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:178:5: note: in expansion of macro ‘MAT3’
  178 |     MAT3(uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:177:5: note: in expansion of macro ‘MAT3’
  177 |     MAT3(uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:176:5: note: in expansion of macro ‘MAT3’
  176 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:174:5: note: in expansion of macro ‘MAT3’
  174 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:173:5: note: in expansion of macro ‘MAT3’
  173 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:172:5: note: in expansion of macro ‘MAT3’
  172 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:171:5: note: in expansion of macro ‘MAT3’
  171 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:170:5: note: in expansion of macro ‘MAT3’
  170 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:168:5: note: in expansion of macro ‘MAT3’
  168 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:167:5: note: in expansion of macro ‘MAT3’
  167 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:166:5: note: in expansion of macro ‘MAT3’
  166 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmatvec7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:263:5: note: in expansion of macro ‘MAT2’
  263 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmatvecd7_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:292:5: note: in expansion of macro ‘MAT3’
  292 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:291:5: note: in expansion of macro ‘MAT3’
  291 |     MAT3( y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:290:5: note: in expansion of macro ‘MAT3’
  290 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:289:5: note: in expansion of macro ‘MAT3’
  289 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro ‘MAT3’
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_cc’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro ‘MAT3’
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_cc’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:288:5: note: in expansion of macro ‘MAT3’
  288 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:287:5: note: in expansion of macro ‘MAT3’
  287 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:286:5: note: in expansion of macro ‘MAT3’
  286 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:285:5: note: in expansion of macro ‘MAT3’
  285 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmatvec27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:322:5: note: in expansion of macro ‘MAT2’
  322 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmatvecd27_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:370:5: note: in expansion of macro ‘MAT3’
  370 |     MAT3( w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:369:5: note: in expansion of macro ‘MAT3’
  369 |     MAT3(  y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:368:5: note: in expansion of macro ‘MAT3’
  368 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:367:5: note: in expansion of macro ‘MAT3’
  367 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro ‘MAT3’
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_cc’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro ‘MAT3’
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_cc’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:366:5: note: in expansion of macro ‘MAT3’
  366 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:365:5: note: in expansion of macro ‘MAT3’
  365 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:364:5: note: in expansion of macro ‘MAT3’
  364 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:363:5: note: in expansion of macro ‘MAT3’
  363 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:362:5: note: in expansion of macro ‘MAT3’
  362 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:361:5: note: in expansion of macro ‘MAT3’
  361 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:360:5: note: in expansion of macro ‘MAT3’
  360 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:359:5: note: in expansion of macro ‘MAT3’
  359 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:358:5: note: in expansion of macro ‘MAT3’
  358 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:357:5: note: in expansion of macro ‘MAT3’
  357 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:356:5: note: in expansion of macro ‘MAT3’
  356 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:355:5: note: in expansion of macro ‘MAT3’
  355 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:354:5: note: in expansion of macro ‘MAT3’
  354 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:353:5: note: in expansion of macro ‘MAT3’
  353 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmresid7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:451:5: note: in expansion of macro ‘MAT2’
  451 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmresid7_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:476:5: note: in expansion of macro ‘MAT3’
  476 |     MAT3(r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:475:5: note: in expansion of macro ‘MAT3’
  475 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:474:5: note: in expansion of macro ‘MAT3’
  474 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:473:5: note: in expansion of macro ‘MAT3’
  473 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:472:5: note: in expansion of macro ‘MAT3’
  472 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:471:5: note: in expansion of macro ‘MAT3’
  471 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:470:5: note: in expansion of macro ‘MAT3’
  470 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:469:5: note: in expansion of macro ‘MAT3’
  469 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmresid27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:503:5: note: in expansion of macro ‘MAT2’
  503 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vmresid27_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:550:5: note: in expansion of macro ‘MAT3’
  550 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:549:5: note: in expansion of macro ‘MAT3’
  549 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:548:5: note: in expansion of macro ‘MAT3’
  548 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:547:5: note: in expansion of macro ‘MAT3’
  547 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:546:5: note: in expansion of macro ‘MAT3’
  546 |     MAT3(uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:545:5: note: in expansion of macro ‘MAT3’
  545 |     MAT3(uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:544:5: note: in expansion of macro ‘MAT3’
  544 |     MAT3(uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:543:5: note: in expansion of macro ‘MAT3’
  543 |     MAT3(uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:542:5: note: in expansion of macro ‘MAT3’
  542 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:540:5: note: in expansion of macro ‘MAT3’
  540 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:539:5: note: in expansion of macro ‘MAT3’
  539 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:538:5: note: in expansion of macro ‘MAT3’
  538 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:537:5: note: in expansion of macro ‘MAT3’
  537 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:536:5: note: in expansion of macro ‘MAT3’
  536 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:534:5: note: in expansion of macro ‘MAT3’
  534 |     MAT3(r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:533:5: note: in expansion of macro ‘MAT3’
  533 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:532:5: note: in expansion of macro ‘MAT3’
  532 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:531:5: note: in expansion of macro ‘MAT3’
  531 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmresid7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:623:5: note: in expansion of macro ‘MAT2’
  623 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmresid7_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:650:5: note: in expansion of macro ‘MAT3’
  650 |     MAT3(w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:649:5: note: in expansion of macro ‘MAT3’
  649 |     MAT3( r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:648:5: note: in expansion of macro ‘MAT3’
  648 |     MAT3( x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:647:5: note: in expansion of macro ‘MAT3’
  647 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:646:5: note: in expansion of macro ‘MAT3’
  646 |     MAT3(fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro ‘MAT3’
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_cc’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro ‘MAT3’
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_cc’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:645:5: note: in expansion of macro ‘MAT3’
  645 |     MAT3(cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:644:5: note: in expansion of macro ‘MAT3’
  644 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:643:5: note: in expansion of macro ‘MAT3’
  643 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:642:5: note: in expansion of macro ‘MAT3’
  642 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmresid27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:681:5: note: in expansion of macro ‘MAT2’
  681 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vnmresid27_1s’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_w1’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:727:5: note: in expansion of macro ‘MAT3’
  727 |     MAT3( w1, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_r’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:726:5: note: in expansion of macro ‘MAT3’
  726 |     MAT3(  r, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:725:5: note: in expansion of macro ‘MAT3’
  725 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:724:5: note: in expansion of macro ‘MAT3’
  724 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:723:5: note: in expansion of macro ‘MAT3’
  723 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:722:5: note: in expansion of macro ‘MAT3’
  722 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:721:5: note: in expansion of macro ‘MAT3’
  721 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:720:5: note: in expansion of macro ‘MAT3’
  720 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:719:5: note: in expansion of macro ‘MAT3’
  719 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:718:5: note: in expansion of macro ‘MAT3’
  718 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:717:5: note: in expansion of macro ‘MAT3’
  717 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:716:5: note: in expansion of macro ‘MAT3’
  716 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:715:5: note: in expansion of macro ‘MAT3’
  715 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:714:5: note: in expansion of macro ‘MAT3’
  714 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:713:5: note: in expansion of macro ‘MAT3’
  713 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:712:5: note: in expansion of macro ‘MAT3’
  712 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:711:5: note: in expansion of macro ‘MAT3’
  711 |     MAT3( fc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro ‘MAT3’
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_cc’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro ‘MAT3’
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_cc’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:710:5: note: in expansion of macro ‘MAT3’
  710 |     MAT3( cc, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:709:5: note: in expansion of macro ‘MAT3’
  709 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vrestrc’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:786:5: note: in expansion of macro ‘MAT2’
  786 |     MAT2(pc, *nxc * *nyc * *nzc, 1 );
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vrestrc2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:852:5: note: in expansion of macro ‘MAT3’
  852 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:851:5: note: in expansion of macro ‘MAT3’
  851 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:850:5: note: in expansion of macro ‘MAT3’
  850 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:849:5: note: in expansion of macro ‘MAT3’
  849 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:847:5: note: in expansion of macro ‘MAT3’
  847 |     MAT3(dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:846:5: note: in expansion of macro ‘MAT3’
  846 |     MAT3(dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:845:5: note: in expansion of macro ‘MAT3’
  845 |     MAT3(dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:844:5: note: in expansion of macro ‘MAT3’
  844 |     MAT3(dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:843:5: note: in expansion of macro ‘MAT3’
  843 |     MAT3(dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:841:5: note: in expansion of macro ‘MAT3’
  841 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:840:5: note: in expansion of macro ‘MAT3’
  840 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:839:5: note: in expansion of macro ‘MAT3’
  839 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:838:5: note: in expansion of macro ‘MAT3’
  838 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:836:5: note: in expansion of macro ‘MAT3’
  836 |     MAT3(uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:835:5: note: in expansion of macro ‘MAT3’
  835 |     MAT3(uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:834:5: note: in expansion of macro ‘MAT3’
  834 |     MAT3(uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:833:5: note: in expansion of macro ‘MAT3’
  833 |     MAT3(uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:832:5: note: in expansion of macro ‘MAT3’
  832 |     MAT3(uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:830:5: note: in expansion of macro ‘MAT3’
  830 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:829:5: note: in expansion of macro ‘MAT3’
  829 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:828:5: note: in expansion of macro ‘MAT3’
  828 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:827:5: note: in expansion of macro ‘MAT3’
  827 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:825:5: note: in expansion of macro ‘MAT3’
  825 |     MAT3(oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:824:5: note: in expansion of macro ‘MAT3’
  824 |     MAT3(oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:823:5: note: in expansion of macro ‘MAT3’
  823 |     MAT3(oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:822:5: note: in expansion of macro ‘MAT3’
  822 |     MAT3(oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:821:5: note: in expansion of macro ‘MAT3’
  821 |     MAT3(oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xout’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:819:5: note: in expansion of macro ‘MAT3’
  819 |     MAT3(xout, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xin’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:818:5: note: in expansion of macro ‘MAT3’
  818 |     MAT3(xin, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:816:12: warning: variable ‘dimfac’ set but not used [-Wunused-but-set-variable]
  816 |     double dimfac;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘VinterpPMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_pc’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:920:5: note: in expansion of macro ‘MAT2’
  920 |     MAT2(pc, *nxc * *nyc * *nzc, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘VinterpPMG2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:982:5: note: in expansion of macro ‘MAT3’
  982 |     MAT3(dPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:981:5: note: in expansion of macro ‘MAT3’
  981 |     MAT3(dPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:980:5: note: in expansion of macro ‘MAT3’
  980 |     MAT3(dPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:979:5: note: in expansion of macro ‘MAT3’
  979 |     MAT3(dPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:977:5: note: in expansion of macro ‘MAT3’
  977 |     MAT3( dPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:976:5: note: in expansion of macro ‘MAT3’
  976 |     MAT3( dPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:975:5: note: in expansion of macro ‘MAT3’
  975 |     MAT3( dPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:974:5: note: in expansion of macro ‘MAT3’
  974 |     MAT3( dPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_dPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:973:5: note: in expansion of macro ‘MAT3’
  973 |     MAT3( dPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:971:5: note: in expansion of macro ‘MAT3’
  971 |     MAT3(uPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:970:5: note: in expansion of macro ‘MAT3’
  970 |     MAT3(uPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:969:5: note: in expansion of macro ‘MAT3’
  969 |     MAT3(uPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:968:5: note: in expansion of macro ‘MAT3’
  968 |     MAT3(uPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:966:5: note: in expansion of macro ‘MAT3’
  966 |     MAT3( uPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:965:5: note: in expansion of macro ‘MAT3’
  965 |     MAT3( uPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:964:5: note: in expansion of macro ‘MAT3’
  964 |     MAT3( uPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:963:5: note: in expansion of macro ‘MAT3’
  963 |     MAT3( uPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:962:5: note: in expansion of macro ‘MAT3’
  962 |     MAT3( uPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:960:5: note: in expansion of macro ‘MAT3’
  960 |     MAT3(oPSW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:959:5: note: in expansion of macro ‘MAT3’
  959 |     MAT3(oPSE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:958:5: note: in expansion of macro ‘MAT3’
  958 |     MAT3(oPNW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:957:5: note: in expansion of macro ‘MAT3’
  957 |     MAT3(oPNE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:955:5: note: in expansion of macro ‘MAT3’
  955 |     MAT3( oPW, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:954:5: note: in expansion of macro ‘MAT3’
  954 |     MAT3( oPE, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:953:5: note: in expansion of macro ‘MAT3’
  953 |     MAT3( oPS, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:952:5: note: in expansion of macro ‘MAT3’
  952 |     MAT3( oPN, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oPC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro ‘MAT3’
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:78:9: warning: unused variable ‘dy_oPC’ [-Wunused-variable]
   78 |     int dy_##mat = dy;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro ‘MAT3’
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:77:9: warning: unused variable ‘dx_oPC’ [-Wunused-variable]
   77 |     int dx_##mat = dx;        \
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:951:5: note: in expansion of macro ‘MAT3’
  951 |     MAT3( oPC, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xout’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:949:5: note: in expansion of macro ‘MAT3’
  949 |     MAT3(xout, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xin’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:948:5: note: in expansion of macro ‘MAT3’
  948 |     MAT3( xin, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c: In function ‘Vextrac’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xout’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:1086:5: note: in expansion of macro ‘MAT3’
 1086 |     MAT3(xout, *nxc, *nyc, *nzc);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_xin’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c:1085:5: note: in expansion of macro ‘MAT3’
 1085 |     MAT3( xin, *nxf, *nyf, *nzf);
      |     ^~~~
[ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c: In function ‘Vmvcs’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c:99:5: note: in expansion of macro ‘MAT2’
   99 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c:560:13: warning: ‘rsden’ may be used uninitialized [-Wmaybe-uninitialized]
  560 |             Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c:88:12: note: ‘rsden’ was declared here
   88 |     double rsden;    // @todo: doc
      |            ^~~~~
[ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c: In function ‘Vmgdriv’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:85:9: warning: unused variable ‘ierror’ [-Wunused-variable]
   85 |     int ierror = 0;
      |         ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.h:62,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c: In function ‘Vmgdriv2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro ‘MAT2’
  267 |     MAT2(iz, 50, nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:234:12: warning: unused variable ‘tsolve’ [-Wunused-variable]
  234 |     double tsolve  = 0.0;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:233:12: warning: unused variable ‘tsetupc’ [-Wunused-variable]
  233 |     double tsetupc = 0.0;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:232:12: warning: unused variable ‘tsetupf’ [-Wunused-variable]
  232 |     double tsetupf = 0.0;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:231:12: warning: unused variable ‘oh’ [-Wunused-variable]
  231 |     double oh      = 0.0;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:230:12: warning: unused variable ‘bf’ [-Wunused-variable]
  230 |     double bf      = 0.0;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:226:12: warning: unused variable ‘epsmac’ [-Wunused-variable]
  226 |     double epsmac  = 0.0;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c: In function ‘Vmgsz’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:655:26: warning: ‘num_narrc_oper’ may be used uninitialized [-Wmaybe-uninitialized]
  655 |             + (num_narrc + num_narrc_oper) * *narrc
      |               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:580:22: note: ‘num_narrc_oper’ was declared here
  580 |     int num_nf_oper, num_narrc_oper;
      |                      ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:654:41: warning: ‘num_nf_oper’ may be used uninitialized [-Wmaybe-uninitialized]
  654 |             + (num_nf    + num_nf_oper) * *nf
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:580:9: note: ‘num_nf_oper’ was declared here
  580 |     int num_nf_oper, num_narrc_oper;
      |         ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:656:13: warning: ‘n_band’ may be used uninitialized [-Wmaybe-uninitialized]
  653 |     *iretot = num_narr * *narr
      |               ~~~~~~~~~~~~~~~~
  654 |             + (num_nf    + num_nf_oper) * *nf
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  655 |             + (num_narrc + num_narrc_oper) * *narrc
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  656 |             + n_band
      |             ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c:577:28: note: ‘n_band’ was declared here
  577 |     int nc_band, num_band, n_band;
      |                            ^~~~~~
[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c: In function ‘Vbuildops’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:83:5: note: in expansion of macro ‘MAT2’
   83 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c: In function ‘Vbuildstr’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:266:5: note: in expansion of macro ‘MAT2’
  266 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c: In function ‘Vbuildcopy0’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:628:5: note: in expansion of macro ‘MAT3’
  628 |     MAT3( fcf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_ccf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:627:5: note: in expansion of macro ‘MAT3’
  627 |     MAT3( ccf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_tcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:626:5: note: in expansion of macro ‘MAT3’
  626 |     MAT3( tcf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a3cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:625:5: note: in expansion of macro ‘MAT3’
  625 |     MAT3(a3cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a2cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:624:5: note: in expansion of macro ‘MAT3’
  624 |     MAT3(a2cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a1cf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:623:5: note: in expansion of macro ‘MAT3’
  623 |     MAT3(a1cf, *nxf, *nyf, *nzf);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gzcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:622:5: note: in expansion of macro ‘MAT3’
  622 |     MAT3(gzcf, *nxf, *nyf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gycf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:621:5: note: in expansion of macro ‘MAT3’
  621 |     MAT3(gycf, *nxf, *nzf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gxcf’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:620:5: note: in expansion of macro ‘MAT3’
  620 |     MAT3(gxcf, *nyf, *nzf,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_tc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:619:5: note: in expansion of macro ‘MAT3’
  619 |     MAT3(  tc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_fc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:618:5: note: in expansion of macro ‘MAT3’
  618 |     MAT3(  fc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_cc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:617:5: note: in expansion of macro ‘MAT3’
  617 |     MAT3(  cc,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a3c’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:616:5: note: in expansion of macro ‘MAT3’
  616 |     MAT3( a3c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a2c’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:615:5: note: in expansion of macro ‘MAT3’
  615 |     MAT3( a2c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_a1c’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:614:5: note: in expansion of macro ‘MAT3’
  614 |     MAT3( a1c,  *nx,  *ny,  *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gzc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:613:5: note: in expansion of macro ‘MAT3’
  613 |     MAT3( gzc,  *nx,  *ny,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gyc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:612:5: note: in expansion of macro ‘MAT3’
  612 |     MAT3( gyc,  *nx,  *nz,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gxc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:611:5: note: in expansion of macro ‘MAT3’
  611 |     MAT3( gxc,  *ny,  *nz,    4);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c: In function ‘Vbuildalg’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c:914:5: note: in expansion of macro ‘MAT2’
  914 |     MAT2(iz, 50, *nlev);
      |     ^~~~
[ 39%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.h:58,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxcopy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:60:5: note: in expansion of macro ‘MAT3’
   60 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:59:5: note: in expansion of macro ‘MAT3’
   59 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxcopy_small’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:78:5: note: in expansion of macro ‘MAT3’
   78 |     MAT3(y, *nx - 2, *ny - 2, *nz - 2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:77:5: note: in expansion of macro ‘MAT3’
   77 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxcopy_large’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:99:5: note: in expansion of macro ‘MAT3’
   99 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:98:5: note: in expansion of macro ‘MAT3’
   98 |     MAT3(x, *nx - 2, *ny - 2, *nz - 2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxaxpy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:117:5: note: in expansion of macro ‘MAT3’
  117 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:116:5: note: in expansion of macro ‘MAT3’
  116 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxnrm1’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:136:5: note: in expansion of macro ‘MAT3’
  136 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxnrm2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:157:5: note: in expansion of macro ‘MAT3’
  157 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxdot’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_y’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:182:5: note: in expansion of macro ‘MAT3’
  182 |     MAT3(y, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:181:5: note: in expansion of macro ‘MAT3’
  181 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vazeros’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:198:9: warning: unused variable ‘nproc’ [-Wunused-variable]
  198 |     int nproc = 1;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘VfboundPMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gzc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:218:5: note: in expansion of macro ‘MAT3’
  218 |     MAT3(gzc, *nx, *ny,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gyc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:217:5: note: in expansion of macro ‘MAT3’
  217 |     MAT3(gyc, *nx, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_gxc’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:216:5: note: in expansion of macro ‘MAT3’
  216 |     MAT3(gxc, *ny, *nz,   2);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:215:5: note: in expansion of macro ‘MAT3’
  215 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘VfboundPMG00’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:262:5: note: in expansion of macro ‘MAT3’
  262 |     MAT3(  x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vaxrand’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:295:12: warning: variable ‘xdum’ set but not used [-Wunused-but-set-variable]
  295 |     double xdum;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:293:33: warning: variable ‘iflag’ set but not used [-Wunused-but-set-variable]
  293 |     int n, i, ii, ipara, ivect, iflag;
      |                                 ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:293:26: warning: variable ‘ivect’ set but not used [-Wunused-but-set-variable]
  293 |     int n, i, ii, ipara, ivect, iflag;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vxscal’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_x’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:322:5: note: in expansion of macro ‘MAT3’
  322 |     MAT3(x, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vprtmatd’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_ac’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:337:5: note: in expansion of macro ‘MAT2’
  337 |     MAT2(ac, *nx * *ny * *nz, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vprtmatd7’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:370:5: note: in expansion of macro ‘MAT3’
  370 |     MAT3(uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:369:5: note: in expansion of macro ‘MAT3’
  369 |     MAT3(oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:368:5: note: in expansion of macro ‘MAT3’
  368 |     MAT3(oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:367:5: note: in expansion of macro ‘MAT3’
  367 |     MAT3(oC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c: In function ‘Vprtmatd27’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:415:5: note: in expansion of macro ‘MAT3’
  415 |     MAT3(uSW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uSE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:414:5: note: in expansion of macro ‘MAT3’
  414 |     MAT3(uSE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:413:5: note: in expansion of macro ‘MAT3’
  413 |     MAT3(uNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:412:5: note: in expansion of macro ‘MAT3’
  412 |     MAT3(uNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uS’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:411:5: note: in expansion of macro ‘MAT3’
  411 |     MAT3( uS, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:410:5: note: in expansion of macro ‘MAT3’
  410 |     MAT3( uN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:409:5: note: in expansion of macro ‘MAT3’
  409 |     MAT3( uW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:408:5: note: in expansion of macro ‘MAT3’
  408 |     MAT3( uE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNW’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:407:5: note: in expansion of macro ‘MAT3’
  407 |     MAT3(oNW, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oNE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:406:5: note: in expansion of macro ‘MAT3’
  406 |     MAT3(oNE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_uC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:405:5: note: in expansion of macro ‘MAT3’
  405 |     MAT3( uC, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oN’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:404:5: note: in expansion of macro ‘MAT3’
  404 |     MAT3( oN, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oE’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:403:5: note: in expansion of macro ‘MAT3’
  403 |     MAT3( oE, *nx, *ny, *nz);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_oC’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c:402:5: note: in expansion of macro ‘MAT3’
  402 |     MAT3( oC, *nx, *ny, *nz);
      |     ^~~~
[ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c: In function ‘Vdpbsl’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_abd’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro ‘MAT2’
   62 |     MAT2(abd, *lda, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c: In function ‘Vdpbfa’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_abd’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro ‘MAT2’
  199 |     MAT2(abd, *lda, 1);
      |     ^~~~
[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c: In function ‘Vmypdefinitsmpbe’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:96:9: warning: unused variable ‘i’ [-Wunused-variable]
   96 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c: In function ‘Vc_vecsmpbe’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:223:26: warning: variable ‘ivect’ set but not used [-Wunused-but-set-variable]
  223 |     int n, i, ii, ipara, ivect;
      |                          ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:223:19: warning: variable ‘ipara’ set but not used [-Wunused-but-set-variable]
  223 |     int n, i, ii, ipara, ivect;
      |                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:223:15: warning: unused variable ‘ii’ [-Wunused-variable]
  223 |     int n, i, ii, ipara, ivect;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:222:9: warning: unused variable ‘iion’ [-Wunused-variable]
  222 |     int iion;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:219:28: warning: unused variable ‘fact’ [-Wunused-variable]
  219 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:219:22: warning: unused variable ‘poly’ [-Wunused-variable]
  219 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:219:12: warning: unused variable ‘argument’ [-Wunused-variable]
  219 |     double argument, poly, fact;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:218:29: warning: unused variable ‘am_pos’ [-Wunused-variable]
  218 |     double am_zero, am_neg, am_pos;
      |                             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:218:21: warning: unused variable ‘am_neg’ [-Wunused-variable]
  218 |     double am_zero, am_neg, am_pos;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:217:18: warning: unused variable ‘zu2’ [-Wunused-variable]
  217 |     double zcf2, zu2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:217:12: warning: unused variable ‘zcf2’ [-Wunused-variable]
  217 |     double zcf2, zu2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:216:9: warning: unused variable ‘ideg’ [-Wunused-variable]
  216 |     int ideg;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c: In function ‘Vdc_vec’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:345:9: warning: unused variable ‘n’ [-Wunused-variable]
  345 |     int n = *nx * *ny * *nz;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:344:9: warning: unused variable ‘i’ [-Wunused-variable]
  344 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c: In function ‘Vdc_vecpmg’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:360:28: warning: unused variable ‘fact’ [-Wunused-variable]
  360 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:360:22: warning: unused variable ‘poly’ [-Wunused-variable]
  360 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:357:9: warning: unused variable ‘ideg’ [-Wunused-variable]
  357 |     int ideg, iion;
      |         ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c: In function ‘Vdc_vecsmpbe’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:433:16: warning: variable ‘ivect’ set but not used [-Wunused-but-set-variable]
  433 |     int ipara, ivect;
      |                ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:433:9: warning: variable ‘ipara’ set but not used [-Wunused-but-set-variable]
  433 |     int ipara, ivect;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:432:15: warning: unused variable ‘ii’ [-Wunused-variable]
  432 |     int n, i, ii;
      |               ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:429:28: warning: unused variable ‘fact’ [-Wunused-variable]
  429 |     double argument, poly, fact;
      |                            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:429:22: warning: unused variable ‘poly’ [-Wunused-variable]
  429 |     double argument, poly, fact;
      |                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:429:12: warning: unused variable ‘argument’ [-Wunused-variable]
  429 |     double argument, poly, fact;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:428:29: warning: unused variable ‘am_pos’ [-Wunused-variable]
  428 |     double am_zero, am_neg, am_pos;
      |                             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:428:21: warning: unused variable ‘am_neg’ [-Wunused-variable]
  428 |     double am_zero, am_neg, am_pos;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:427:18: warning: unused variable ‘zu2’ [-Wunused-variable]
  427 |     double zcf2, zu2;
      |                  ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:427:12: warning: unused variable ‘zcf2’ [-Wunused-variable]
  427 |     double zcf2, zu2;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:426:15: warning: unused variable ‘iion’ [-Wunused-variable]
  426 |     int ideg, iion;
      |               ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c:426:9: warning: unused variable ‘ideg’ [-Wunused-variable]
  426 |     int ideg, iion;
      |         ^~~~
[ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c:56:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c: In function ‘Vfnewton’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c:77:5: note: in expansion of macro ‘MAT2’
   77 |     MAT2( iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c: In function ‘Vnewton’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c:187:5: note: in expansion of macro ‘MAT2’
  187 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c: In function ‘Vgetjac’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c:560:5: note: in expansion of macro ‘MAT2’
  560 |     MAT2(iz, 50, 1);
      |     ^~~~
[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c: In function ‘Vnewdriv’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:86:9: warning: unused variable ‘maxlev’ [-Wunused-variable]
   86 |     int maxlev; /// @todo: Doc
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:85:9: warning: unused variable ‘ierror’ [-Wunused-variable]
   85 |     int ierror; /// @todo: Doc
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c: In function ‘Vnewdriv2’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:223:9: warning: unused variable ‘i’ [-Wunused-variable]
  223 |     int i;
      |         ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:221:12: warning: unused variable ‘orsnrm_t’ [-Wunused-variable]
  221 |     double orsnrm_t;
      |            ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:220:12: warning: unused variable ‘rsden_t’ [-Wunused-variable]
  220 |     double rsden_t;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:219:12: warning: unused variable ‘rsnrm_t’ [-Wunused-variable]
  219 |     double rsnrm_t;
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:218:9: warning: unused variable ‘iters_t’ [-Wunused-variable]
  218 |     int iters_t;
      |         ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:217:9: warning: unused variable ‘iok_t’ [-Wunused-variable]
  217 |     int iok_t;
      |         ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:215:9: warning: unused variable ‘numlev’ [-Wunused-variable]
  215 |     int numlev;
      |         ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:210:12: warning: unused variable ‘tsolve’ [-Wunused-variable]
  210 |     double tsolve;  /// @todo:  Doc
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:209:12: warning: unused variable ‘tsetupc’ [-Wunused-variable]
  209 |     double tsetupc; /// @todo:  Doc
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:208:12: warning: unused variable ‘tsetupf’ [-Wunused-variable]
  208 |     double tsetupf; /// @todo:  Doc
      |            ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:207:12: warning: unused variable ‘oh’ [-Wunused-variable]
  207 |     double oh;      /// @todo:  Doc
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:206:12: warning: unused variable ‘bf’ [-Wunused-variable]
  206 |     double bf;      /// @todo:  Doc
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:204:12: warning: variable ‘omegal’ set but not used [-Wunused-but-set-variable]
  204 |     double omegal;  /// @todo:  Doc
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c:202:12: warning: unused variable ‘epsmac’ [-Wunused-variable]
  202 |     double epsmac;  /// @todo:  Doc
      |            ^~~~~~
[ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c: In function ‘Vpower’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c:74:5: note: in expansion of macro ‘MAT2’
   74 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c:71:9: warning: unused variable ‘skipIters’ [-Wunused-variable]
   71 |     int skipIters = 0;
      |         ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c: In function ‘Vipower’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c:188:5: note: in expansion of macro ‘MAT2’
  188 |     MAT2(iz, 50, 1);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c: In function ‘Vmpower’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c:311:5: note: in expansion of macro ‘MAT2’
  311 |     MAT2(iz, 50, 1);
      |     ^~~~
[ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o
[ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/smoothd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.h:57,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:55:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c: In function ‘Vfmvfas’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:79:5: note: in expansion of macro ‘MAT2’
   79 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:74:12: warning: variable ‘errd’ set but not used [-Wunused-but-set-variable]
   74 |     double errd;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c: In function ‘Vmvfas’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:66:9: warning: unused variable ‘dy_iz’ [-Wunused-variable]
   66 |     int dy_##mat = dy
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:182:5: note: in expansion of macro ‘MAT2’
  182 |     MAT2(iz, 50, *nlev);
      |     ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:171:33: warning: unused variable ‘ivariv’ [-Wunused-variable]
  171 |     int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid;
      |                                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:254:13: warning: ‘rsden’ may be used uninitialized [-Wmaybe-uninitialized]
  254 |          if (rsden == 0.0) {
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c:176:12: note: ‘rsden’ was declared here
  176 |     double rsden, rsnrm, orsnrm;
      |            ^~~~~
[ 47%] Built target apbs_pmgc
[ 48%] Linking C shared library ../lib/libapbs.so
[ 48%] Built target apbs
[ 49%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘loadDielMaps’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:296:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  296 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  298 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:331:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  331 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  333 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:420:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  420 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  422 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:454:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  454 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  456 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1234:12: warning: variable ‘iparm’ set but not used [-Wunused-but-set-variable]
 1234 |            iparm,
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘energyMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1584:13: warning: variable ‘mgparm’ set but not used [-Wunused-but-set-variable]
 1584 |     MGparm *mgparm;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1803:10: warning: variable ‘mxtype’ set but not used [-Wunused-but-set-variable]
 1803 |     char mxtype[3];
      |          ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printApolForce’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:3485:12: warning: variable ‘scalar’ set but not used [-Wunused-but-set-variable]
 3485 |            scalar,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:3484:12: warning: variable ‘temp’ set but not used [-Wunused-but-set-variable]
 3484 |     double temp,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4496:12: warning: variable ‘sav’ set but not used [-Wunused-but-set-variable]
 4496 |            sav,         /**< @todo document */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4495:12: warning: variable ‘sasa’ set but not used [-Wunused-but-set-variable]
 4495 |     double sasa,        /**< @todo document */
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4489:12: warning: unused variable ‘ts’ [-Wunused-variable]
 4489 |     time_t ts;      /**< Temporary timing variable for debugging (PCE) */
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘forceAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4753:13: warning: unused variable ‘apos’ [-Wunused-variable]
 4753 |            *apos;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4737:46: warning: unused variable ‘ts_sub’ [-Wunused-variable]
 4737 |                          time_t ts, ts_main, ts_sub;
      |                                              ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type ‘char[1024]’
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:73:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1826:34: warning: ‘-PE’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
 1826 |         sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank);
      |                                  ^~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:67:
In function ‘sprintf’,
    inlined from ‘writematMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1826:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1038 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1840:30: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 1840 |         sprintf(outpath, "%s.%s", writematstem, "mat");
      |                              ^~                 ~~~~~
In function ‘sprintf’,
    inlined from ‘writematMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1840:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataFlat’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2105:33: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2105 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1906:44: note: ‘scalar’ was declared here
 1906 |     double conversion, ltenergy, gtenergy, scalar;
      |                                            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataXML’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2363:33: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2363 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2140:44: note: ‘scalar’ was declared here
 2140 |     double conversion, ltenergy, gtenergy, scalar;
      |                                            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2676:30: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2676 |         sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                              ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2676:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2720:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2720 |                 sprintf(outpath, "%s.%s", writestem, "txt");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2720:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2711:38: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2711 |                 sprintf(outpath, "%s.%s", writestem, "dx.gz");
      |                                      ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2711:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2694:38: warning: ‘%s’ directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2694 |                 sprintf(outpath, "%s.%s", writestem, "mcsf");
      |                                      ^~              ~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2694:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 1029 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2687:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2687 |                 sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2687:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2701:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2701 |                 sprintf(outpath, "%s.%s", writestem, "grd");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2701:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2666:38: warning: ‘%s’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2666 |                 sprintf(outpath, "%s.%s", writestem, "dx");
      |                                      ^~              ~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2666:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘returnEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2778:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2778 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2762:12: note: ‘scalar’ was declared here
 2762 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2839:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2839 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2795:12: note: ‘scalar’ was declared here
 2795 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printElecEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2904:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2904 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2863:12: note: ‘scalar’ was declared here
 2863 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printApolEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2970:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2970 |         gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) +
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2971 |                                (apolparm->press*apolparm->sav) +
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2972 |                                (apolparm->wcaEnergy)));
      |                                ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2925:12: note: ‘scalar’ was declared here
 2925 |            scalar;
      |            ^~~~~~
[ 49%] Built target apbs_routines
[ 50%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:117:11: warning: unused variable ‘gm’ [-Wunused-variable]
  117 |     void *gm[NOSH_MAXMOL];
      |           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:116:11: warning: variable ‘fetk’ set but not used [-Wunused-but-set-variable]
  116 |     void *fetk[NOSH_MAXCALC];
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:96:18: warning: unused variable ‘geoflowparm’ [-Wunused-variable]
   96 |     GEOFLOWparm *geoflowparm = VNULL;
      |                  ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:92:14: warning: unused variable ‘feparm’ [-Wunused-variable]
   92 |     FEMparm *feparm = VNULL;
      |              ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:86:17: warning: unused variable ‘te’ [-Wunused-variable]
   86 |     clock_t ts, te;
      |                 ^~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/main.c:70:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 51%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘loadDielMaps’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:296:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  296 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  298 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:331:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  331 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  333 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:420:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  420 |                 for (ii=0; ii<(nx*ny*nz); ii++)
      |                 ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  422 |                     sum = sum*hx*hy*hzed;
      |                     ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:454:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  454 |         for (ii=0; ii<(nx*ny*nz); ii++)
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  456 |           sum = sum*hx*hy*hzed;
      |           ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1234:12: warning: variable ‘iparm’ set but not used [-Wunused-but-set-variable]
 1234 |            iparm,
      |            ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘energyMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1584:13: warning: variable ‘mgparm’ set but not used [-Wunused-but-set-variable]
 1584 |     MGparm *mgparm;
      |             ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1803:10: warning: variable ‘mxtype’ set but not used [-Wunused-but-set-variable]
 1803 |     char mxtype[3];
      |          ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printApolForce’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:3485:12: warning: variable ‘scalar’ set but not used [-Wunused-but-set-variable]
 3485 |            scalar,
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:3484:12: warning: variable ‘temp’ set but not used [-Wunused-but-set-variable]
 3484 |     double temp,
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4496:12: warning: variable ‘sav’ set but not used [-Wunused-but-set-variable]
 4496 |            sav,         /**< @todo document */
      |            ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4495:12: warning: variable ‘sasa’ set but not used [-Wunused-but-set-variable]
 4495 |     double sasa,        /**< @todo document */
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4489:12: warning: unused variable ‘ts’ [-Wunused-variable]
 4489 |     time_t ts;      /**< Temporary timing variable for debugging (PCE) */
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘forceAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4753:13: warning: unused variable ‘apos’ [-Wunused-variable]
 4753 |            *apos;
      |             ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4737:46: warning: unused variable ‘ts_sub’ [-Wunused-variable]
 4737 |                          time_t ts, ts_main, ts_sub;
      |                                              ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:54:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘initAPOL’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4590 |         atomData = Vparam_getAtomData(param, "WAT", "OW");
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 2 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4590:20: note: referencing argument 3 of type ‘char[1024]’
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.h:73,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:73:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=]
 4591 |         if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O");
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 2 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: warning: ‘Vparam_getAtomData’ accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=]
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4591:43: note: referencing argument 3 of type ‘char[1024]’
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vparam.h:304:27: note: in a call to function ‘Vparam_getAtomData’
  304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee,
      |                           ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1826:34: warning: ‘-PE’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
 1826 |         sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank);
      |                                  ^~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:67:
In function ‘sprintf’,
    inlined from ‘writematMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1826:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1038 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writematMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1840:30: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 1840 |         sprintf(outpath, "%s.%s", writematstem, "mat");
      |                              ^~                 ~~~~~
In function ‘sprintf’,
    inlined from ‘writematMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1840:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataFlat’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2105:33: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2105 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:1906:44: note: ‘scalar’ was declared here
 1906 |     double conversion, ltenergy, gtenergy, scalar;
      |                                            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataXML’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2363:33: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2363 |             ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2140:44: note: ‘scalar’ was declared here
 2140 |     double conversion, ltenergy, gtenergy, scalar;
      |                                            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2676:30: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2676 |         sprintf(outpath, "%s.%s", writestem, "dxbin");
      |                              ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2676:9:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2720:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2720 |                 sprintf(outpath, "%s.%s", writestem, "txt");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2720:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2711:38: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2711 |                 sprintf(outpath, "%s.%s", writestem, "dx.gz");
      |                                      ^~              ~~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2711:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2694:38: warning: ‘%s’ directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2694 |                 sprintf(outpath, "%s.%s", writestem, "mcsf");
      |                                      ^~              ~~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2694:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 1029 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2687:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2687 |                 sprintf(outpath, "%s.%s", writestem, "ucd");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2687:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2701:38: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2701 |                 sprintf(outpath, "%s.%s", writestem, "grd");
      |                                      ^~              ~~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2701:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘writedataMG’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2666:38: warning: ‘%s’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
 2666 |                 sprintf(outpath, "%s.%s", writestem, "dx");
      |                                      ^~              ~~~~
In function ‘sprintf’,
    inlined from ‘writedataMG’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2666:17:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘returnEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2778:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2778 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2762:12: note: ‘scalar’ was declared here
 2762 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2839:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2839 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2795:12: note: ‘scalar’ was declared here
 2795 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printElecEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2904:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2904 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2863:12: note: ‘scalar’ was declared here
 2863 |            scalar;
      |            ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c: In function ‘printApolEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2970:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 2970 |         gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) +
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2971 |                                (apolparm->press*apolparm->sav) +
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2972 |                                (apolparm->wcaEnergy)));
      |                                ~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:2925:12: note: ‘scalar’ was declared here
 2925 |            scalar;
      |            ^~~~~~
[ 52%] Linking C executable ../bin/apbs
[ 52%] Built target apbs-bin
[ 54%] Generating documentation with Doxygen
warning: Tag 'TCL_SUBST' at line 213 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 857 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'HTML_TIMESTAMP' at line 953 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'FORMULA_TRANSPARENT' at line 1175 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1313 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 1565 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 1577 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1586 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 1616 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 1621 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 1770 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: tag INPUT: input source '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/doc/license/LICENSE.txt' does not exist
warning: source '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/doc/license/LICENSE.txt' is not a readable file or directory... skipping.
Doxygen version used: 1.13.2
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Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.h:7: warning: the name 'beparm.h' supplied as the argument in the \file statement is not an input file
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Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/mainpage.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/mainpage.h...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Warn for undocumented namespaces...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating images for formulas in HTML...
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Generating example documentation...
Generating file sources...
Generating code for file doc/programmer/mainpage.h...
Generating code for file src/apbs.h...
Generating code for file src/fem/vcsm.c...
Generating code for file src/fem/vcsm.h...
Generating code for file src/fem/vfetk.c...
Generating code for file src/fem/vfetk.h...
Generating code for file src/fem/vpee.c...
Generating code for file src/fem/vpee.h...
Generating code for file src/generic/apolparm.c...
Generating code for file src/generic/apolparm.h...
Generating code for file src/generic/bemparm.c...
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Generating code for file src/generic/femparm.c...
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Generating code for file src/generic/geoflowparm.c...
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Generating code for file src/generic/mgparm.c...
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Generating code for file src/generic/nosh.c...
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Generating code for file src/generic/pbsamparm.c...
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Generating code for file src/generic/vgreen.h...
Generating code for file src/generic/vhal.h...
Generating code for file src/generic/vmatrix.h...
Generating code for file src/generic/vparam.c...
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Generating code for file src/generic/vunit.h...
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Generating code for file src/pmgc/buildAd.c...
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Generating code for file src/pmgc/buildBd.c...
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Generating code for file src/pmgc/mikpckd.c...
Generat/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:2095: warning: Member polyEval(int numP, double p[], double c[][VMAXP], double xv[]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1528: warning: Member Vfetk_PDE_initElement(PDE *thee, int elementType, int chart, double tvx[][3], void *data) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1571: warning: Member Vfetk_PDE_initPoint(PDE *thee, int pointType, int chart, double txq[], double tU[], double tdU[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1741: warning: Member Vfetk_PDE_DFu_wv(PDE *thee, int key, double W[], double dW[][VAPBS_DIM], double V[], double dV[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1902: warning: Member Vfetk_PDE_bisectEdge(int dim, int dimII, int edgeType, int chart[], double vx[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1912: warning: Member Vfetk_PDE_mapBoundary(int dim, int dimII, int vertexType, int chart, double vx[3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1917: warning: Member Vfetk_PDE_markSimplex(int dim, int dimII, int simplexType, int faceType[VAPBS_NVS], int vertexType[VAPBS_NVS], int chart[], double vx[][3], void *simplex) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1998: warning: Member Vfetk_PDE_oneChart(int dim, int dimII, int objType, int chart[], double vx[][3], int dimV) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:86: warning: Member var (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:93: warning: Member diriCubeString (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:130: warning: Member neumCubeString (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:366: warning: Member dim_2DP1 (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:386: warning: Member lgr_2DP1[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:395: warning: Member lgr_2DP1x[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:402: warning: Member lgr_2DP1y[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:409: warning: Member lgr_2DP1z[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:437: warning: Member dim_3DP1 (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:438: warning: Member lgr_3DP1[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:446: warning: Member lgr_3DP1x[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:454: warning: Member lgr_3DP1y[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:462: warning: Member lgr_3DP1z[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:476: warning: Member P_DEG (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:482: warning: Member numP (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:483: warning: Member c[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:484: warning: Member cx[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:485: warning: Member cy[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:486: warning: Member cz[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:498: warning: Member Vpee_userDefined(Vpee *thee, SS *sm) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:532: warning: Member Vpee_ourSimp(Vpee *thee, SS *sm, int rcol) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:66: warning: Member Aprx_estNonlinResid(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:72: warning: Member Aprx_estLocalProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:77: warning: Member Aprx_estDualProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:237: warning: Member APOLparm_parseGRID(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:268: warning: Member APOLparm_parseMOL(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:287: warning: Member APOLparm_parseSRFM(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:309: warning: Member APOLparm_parseSRAD(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:328: warning: Member APOLparm_parseSWIN(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:347: warning: Member APOLparm_parseTEMP(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:366: warning: Member APOLparm_parseGAMMA(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:385: warning: Member APOLparm_parseCALCENERGY(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:438: warning: Member APOLparm_parseCALCFORCE(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:491: warning: Member APOLparm_parseBCONC(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:510: warning: Member APOLparm_parseSDENS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:529: warning: Member APOLparm_parseDPOS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:558: warning: Member APOLparm_parsePRESS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:210: warning: Member BEMparm_parseTREE_ORDER(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:233: warning: Member BEMparm_parseTREE_N0(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:256: warning: Member BEMparm_parseMAC(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:279: warning: Member BEMparm_parseMESH(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:308: warning: Member BEMparm_parseOUTDATA(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:196: warning: Member FEMparm_parseDOMAINLENGTH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:221: warning: Member FEMparm_parseETOL(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:244: warning: Member FEMparm_parseEKEY(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:276: warning: Member FEMparm_parseAKEYPRE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:303: warning: Member FEMparm_parseAKEYSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:333: warning: Member FEMparm_parseTARGETNUM(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:352: warning: Member FEMparm_parseTARGETRES(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:372: warning: Member FEMparm_parseMAXSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:391: warning: Member FEMparm_parseMAXVERT(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:411: warning: Member FEMparm_parseUSEMESH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:138: warning: Member FUBAR(const char *name) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:143: warning: Member parseNonNeg(double *tf, double def, int *set, char *name, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:164: warning: Member GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:186: warning: Member GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169: warning: Member GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171: warning: Member GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:415: warning: Member MGparm_parseDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:446: warning: Member MGparm_parseCHGM(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:497: warning: Member MGparm_parseNLEV(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:516: warning: Member MGparm_parseETOL(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:539: warning: Member MGparm_parseGRID(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:570: warning: Member MGparm_parseGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:601: warning: Member MGparm_parseGAMMA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:616: warning: Member MGparm_parseGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:668: warning: Member MGparm_parseCGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:699: warning: Member MGparm_parseFGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:730: warning: Member MGparm_parseCGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:782: warning: Member MGparm_parseFGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:834: warning: Member MGparm_parsePDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:872: warning: Member MGparm_parseOFRAC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:892: warning: Member MGparm_parseASYNC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:912: warning: Member MGparm_parseUSEAQUA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:970: warning: Member NOsh_parseREAD(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1021: warning: Member NOsh_parsePRINT(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1187: warning: Member NOsh_parseELEC(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1313: warning: Member NOsh_parseAPOLAR(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2385: warning: Member NOsh_parseFEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1510: warning: Member NOsh_parseMG(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2845: warning: Member NOsh_parseBEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2934: warning: Member NOsh_parseGEOFLOW(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3048: warning: Member NOsh_parsePBAM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3166: warning: Member NOsh_parsePBSAM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2508: warning: Member NOsh_parseAPOL(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1603: warning: Member NOsh_setupCalcMG(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1815: warning: Member NOsh_setupCalcMGAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1747: warning: Member NOsh_setupCalcMGMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2090: warning: Member NOsh_setupCalcMGPARA(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1722: warning: Member NOsh_setupCalcFEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2471: warning: Member NOsh_setupCalcFEMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1638: warning: Member NOsh_setupCalcBEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1666: warning: Member NOsh_setupCalcGEOFLOW(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1686: warning: Member NOsh_setupCalcPBAM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1704: warning: Member NOsh_setupCalcPBSAM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2612: warning: Member NOsh_setupCalcBEMMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2677: warning: Member NOsh_setupCalcGEOFLOWMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2735: warning: Member NOsh_setupCalcPBAMAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2786: warning: Member NOsh_setupCalcPBSAMAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2581: warning: Member NOsh_setupCalcAPOL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:598: warning: Member NOsh_parseREAD_MOL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:675: warning: Member NOsh_parseREAD_PARM(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:739: warning: Member NOsh_parseREAD_DIEL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:793: warning: Member NOsh_parseREAD_KAPPA(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:839: warning: Member NOsh_parseREAD_POTENTIAL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:884: warning: Member NOsh_parseREAD_CHARGE(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:930: warning: Member NOsh_parseREAD_MESH(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:458: warning: Member PBAMparm_parseNtraj(PBAMparm *thee, Vio *sock) (function) of file pbamparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:549: warning: Member PBAMparm_parseTerm(PBAMparm *thee, Vio *sock) (function) of file pbamparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:77: warning: Member PBAMPARM_MAXWRITE (macro definition) of file pbamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:78: warning: Member PBAMPARM_MAXMOL (macro definition) of file pbamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:87: warning: Member PBEparm_getzmem(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:91: warning: Member PBEparm_getLmem(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:95: warning: Member PBEparm_getmembraneDiel(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:99: warning: Member PBEparm_getmemv(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:368: warning: Member PBEparm_parseLPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:375: warning: Member PBEparm_parseNPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:382: warning: Member PBEparm_parseMOL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:401: warning: Member PBEparm_parseLRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:408: warning: Member PBEparm_parseNRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:415: warning: Member PBEparm_parseSMPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:474: warning: Member PBEparm_parseBCFL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:555: warning: Member PBEparm_parseION(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:652: warning: Member PBEparm_parsePDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:671: warning: Member PBEparm_parseSDENS(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:690: warning: Member PBEparm_parseSDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:709: warning: Member PBEparm_parseSRFM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:780: warning: Member PBEparm_parseSRAD(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:799: warning: Member PBEparm_parseSWIN(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:818: warning: Member PBEparm_parseTEMP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:837: warning: Member PBEparm_parseUSEMAP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:895: warning: Member PBEparm_parseCALCENERGY(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:948: warning: Member PBEparm_parseCALCFORCE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1005: warning: Member PBEparm_parseZMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1025: warning: Member PBEparm_parseLMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1044: warning: Member PBEparm_parseMDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1063: warning: Member PBEparm_parseMEMV(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1084: warning: Member PBEparm_parseWRITE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1178: warning: Member PBEparm_parseWRITEMAT(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:77: warning: Member PBSAMPARM_MAXWRITE (macro definition) of file pbsamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:78: warning: Member PBSAMPARM_MAXMOL (macro definition) of file pbsamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:277: warning: Member Vacc_vdwAcc(Vacc *thee, double center[3]) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:307: warning: Member Vacc_ivdwAcc(Vacc *thee, double center[3], double radius) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:679: warning: Member Vacc_writeGMV(Vacc *thee, double radius, int meth, Gem *gm, char *iodev, char *iofmt, char *iohost, char *iofile) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1252: warning: Member Vacc_SASAPos(Vacc *thee, double radius) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1277: warning: Member Vacc_atomSASAPos(Vacc *thee, double radius, Vatom *atom, int mode) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:76: warning: The following parameter of ivdwAccExclus(Vacc *thee, double center[3], double radius, int atomID) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:490: warning: The following parameter of splineAcc(Vacc *thee, double center[VAPBS_DIM], double win, double infrad, VclistCell *cell) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:186: warning: Member Valist_readPDBSerial(Valist *thee, Vio *sock, int *serial) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:206: warning: Member Valist_readPDBAtomName(Valist *thee, Vio *sock, char atomName[VMAX_ARGLEN]) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:224: warning: Member Valist_readPDBResidueName(Valist *thee, Vio *sock, char resName[VMAX_ARGLEN]) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:242: warning: Member Valist_readPDBResidueNumber(Valist *thee, Vio *sock, int *resSeq) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:298: warning: Member Valist_readPDBAtomCoord(Valist *thee, Vio *sock, double *coord) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:316: warning: Member Valist_readPDBChargeRadius(Valist *thee, Vio *sock, double *charge, double *radius) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:344: warning: Member Valist_readPDB_throughXYZ(Valist *thee, Vio *sock, int *serial, char atomName[VMAX_ARGLEN], char resName[VMAX_ARGLEN], int *resSeq, double *x, double *y, double *z) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:424: warning: Member Valist_getAtomStorage(Valist *thee, Vatom **plist, int *pnlist, int *pnatoms) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:480: warning: Member Valist_setAtomArray(Valist *thee, Vatom **plist, int nlist, int natoms) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:60: warning: Member Valist_whiteChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:61: warning: Member Valist_commChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:62: warning: Member Valist_xmlwhiteChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:128: warning: Member VCLIST_INFLATE (macro definition) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:90: warning: Member Vclist_getMolDims(Vclist *thee, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM], double *r_max) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:125: warning: Member Vclist_setupGrid(Vclist *thee) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:174: warning: Member Vclist_storeParms(Vclist *thee, Valist *alist, double max_radius, int npts[VAPBS_DIM], Vclist_DomainMode mode, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM]) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:231: warning: Member Vclist_gridSpan(Vclist *thee, Vatom *atom, int imin[VAPBS_DIM], int imax[VAPBS_DIM]) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:262: warning: Member Vclist_arrayIndex(Vclist *thee, int i, int j, int k) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:270: warning: Member Vclist_assignAtoms(Vclist *thee) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:425: warning: Member treesetup(Vgreen *thee) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:505: warning: Member treecleanup(Vgreen *thee) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:525: warning: Member treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, double *qtar, int numtars, double *tpengtar, double *x, double *y, double *z, double *q, int numpars, double *fx, double *fy, double *fz, int iflag, int farrdim, int arrdim) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:458: warning: Member MAX_HASH_DIM (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:572: warning: Member OS_SEP_STR (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:573: warning: Member OS_SEP_CHAR (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:600: warning: Member ANNOUNCE_FUNCTION (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:601: warning: Member WARN_UNTESTED (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:602: warning: Member WARN_PARTTESTED (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:653: warning: Member VCHANNELEDMESSAGE0(channel, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:658: warning: Member VCHANNELEDMESSAGE1(channel, msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:665: warning: Member VCHANNELEDMESSAGE2(channel, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:672: warning: Member VCHANNELEDMESSAGE3(channel, msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:679: warning: Member VMESSAGE0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:680: warning: Member VMESSAGE1(msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:681: warning: Member VMESSAGE2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:682: warning: Member VMESSAGE3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:684: warning: Member VERRMSG0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:685: warning: Member VERRMSG1(msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:686: warning: Member VERRMSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:687: warning: Member VERRMSG3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:731: warning: Member VASSERT_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:741: warning: Member VASSERT_MSG1(cnd, msg, arg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:753: warning: Member VASSERT_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:825: warning: Member VWARN_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:838: warning: Member VWARN_MSG1(cnd, msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:853: warning: Member VWARN_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:899: warning: Member VABORT_MSG0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:907: warning: Member VABORT_MSG1(msg, arg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:917: warning: Member VABORT_MSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:944: warning: Member PRINT_INT(expr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:945: warning: Member PRINT_DBL(expr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:948: warning: Member VMALLOC(vmem, n, type) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:950: warning: Member VFREE(vmem, n, type, ptr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:952: warning: Member VFILL(vec, n, val) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:959: warning: Member VCOPY(srcvec, dstvec, i, n) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:968: warning: Member VAT(array, i) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:969: warning: Member RAT(array, i) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:73: warning: Member Vrc_Codes (typedef) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:95: warning: Member Vsol_Meth (typedef) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:966: warning: Member wrap_text(char *str, int right_margin, int left_padding) (function) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:64: warning: Member MAT2(mat, dx, dy) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:68: warning: Member RAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:71: warning: Member VAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:76: warning: Member MAT3(mat, dx, dy, dz) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:81: warning: Member RAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:84: warning: Member VAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vpbe.c:62: warning: Member MAX_SPLINE_WINDOW (macro definition) of file vpbe.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:67: warning: Member IJK(i, j, k) (macro definition) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:77: warning: Member MCwhiteChars (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:78: warning: Member MCcommChars (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:79: warning: Member Vcompare (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:80: warning: Member Vprecision[26] (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c:113: warning: Member IJK(i, j, k) (macro definition) of file vopot.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1401: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2828: warning: Member bcCalcOrig(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3130: warning: Member gridPointIsValid(int i, int j, int k, int nx, int ny, int nz) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3313: warning: Member packAtoms(double *ax, double *ay, double *az, double *charge, double *size, Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3338: warning: Member packUnpack(int nx, int ny, int nz, int ngrid, double *gx, double *gy, double *gz, double *value, Vpmg *thee, int pack) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3407: warning: Member bcflnew(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3597: warning: Member bcfl_sdh(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3868: warning: Member bcfl_mdh(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3995: warning: Member bcfl_mem(double zmem, double L, double eps_m, double eps_w, double V, double xkappa, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4174: warning: Member bcfl_map(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6684: warning: Member markFrac(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *xarray, double *yarray, double *zarray) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10260: warning: Member fillcoPermanentInduced(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1056: warning: The following parameter of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) is not documented:
  parameter 'size'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: argument 'hz' of command @param is not found in the argument list of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: The following parameter of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) is not documented:
  parameter 'rtot'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1107: warning: The following parameter of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) is not documented:
  parameter 'r'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1315: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1325: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1335: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:995: warning: The following parameter of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1006: warning: The following parameter of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1017: warning: The following parameter of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1029: warning: The following parameter of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) is not documented:
  parameter 'srfm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1348: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented:
  parameter 'thee'
  parameter 'solution'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:105: warning: Member VPMGMAXPART (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1392: warning: Member VCUB(x) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1393: warning: Member VLOG(x) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1395: warning: Member IJK(i, j, k) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1396: warning: Member IJKx(j, k, i) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1397: warning: Member IJKy(i, k, j) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1398: warning: Member IJKz(i, j, k) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1399: warning: Member VFCHI(iint, iflt) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1056: warning: The following parameter of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) is not documented:
  parameter 'size'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: The following parameter of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) is not documented:
  parameter 'rtot'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1107: warning: The following parameter of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) is not documented:
  parameter 'r'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1315: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1325: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1335: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:995: warning: The following parameter of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1006: warning: The following parameter of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1017: warning: The following parameter of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1029: warning: The following parameter of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) is not documented:
  parameter 'srfm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1348: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented:
  parameter 'thee'
  parameter 'solution'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c:294: warning: Member coarsenThis(int nOld) (function) of file vpmgp.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.h:17: warning: end of comment block while expecting command </tt> (Probable start '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.h' at line 9)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:247: warning: argument 'parm' of command @param is not found in the argument list of PBAMparm_parseSalt(PBAMparm *thee, Vio *sock)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:247: warning: The following parameter of PBAMparm_parseSalt(PBAMparm *thee, Vio *sock) is not documented:
  parameter 'sock'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:513: warning: The following parameter of energyAPOL(APOLparm *apolparm, double sasa, double sav, double atomsasa[], double atomwcaEnergy[], int numatoms) is not documented:
  parameter 'apolparm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:610: warning: The following parameter of killFE(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vfetk *fetk[NOSH_MAXCALC], Gem *gem[NOSH_MAXMOL]) is not documented:
  parameter 'nosh'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:262: warning: The following parameter of killMG(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vpmgp *pmgp[NOSH_MAXCALC], Vpmg *pmg[NOSH_MAXCALC]) is not documented:
  parameter 'nosh'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:882: warning: argument 'charge' of command @param is not found in the argument list of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:882: warning: The following parameter of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:662: warning: argument 'kappa' of command @param is not found in the argument list of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:662: warning: The following parameter of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:791: warning: argument 'pot' of command @param is not found in the argument list of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:791: warning: The following parameter of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:622: warning: argument 'nosh' of command @param is not found in the argument list of preRefineFE(int i, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:494: warning: The following parameter of printApolForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:445: warning: The following parameter of printElecEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:481: warning: The following parameter of printElecForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:432: warning: The following parameter of printEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:468: warning: The following parameter of printForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4125: warning: argument 'i' of command @param is not found in the argument list of solveFE(int icalc, PBEparm *pbeparm, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:104: warning: Member vdw (variable) of struct sGEOFLOWparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:105: warning: Member setvdw (variable) of struct sGEOFLOWparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:111: warning: Member salt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:112: warning: Member setsalt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:115: warning: Member runtype[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:116: warning: Member setruntype (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:119: warning: Member runname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:120: warning: Member setrunname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:123: warning: Member setrandorient (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:126: warning: Member pbcboxlen (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:127: warning: Member setpbcs (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:130: warning: Member units[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:131: warning: Member setunits (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:137: warning: Member gridpt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:138: warning: Member setgridpt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:141: warning: Member map3dname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:142: warning: Member set3dmap (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:145: warning: Member grid2Dname[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:146: warning: Member grid2Dax[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:147: warning: Member grid2Dloc[PBAMPARM_MAXWRITE] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:148: warning: Member grid2Dct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:149: warning: Member setgrid2Dname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:152: warning: Member dxname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:153: warning: Member setdxname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:158: warning: Member ntraj (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:159: warning: Member setntraj (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:161: warning: Member termcombine[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:162: warning: Member settermcombine (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:164: warning: Member diffct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:165: warning: Member moveType[PBAMPARM_MAXMOL][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:166: warning: Member transDiff[PBAMPARM_MAXMOL] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:167: warning: Member rotDiff[PBAMPARM_MAXMOL] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:169: warning: Member termct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:170: warning: Member setterm (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:172: warning: Member termnam[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:173: warning: Member termnu[PBAMPARM_MAXWRITE][1] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:174: warning: Member termVal[PBAMPARM_MAXWRITE] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:175: warning: Member confil[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:176: warning: Member conpad[PBAMPARM_MAXWRITE] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:177: warning: Member confilct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:179: warning: Member setxyz (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:180: warning: Member xyzct[PBAMPARM_MAXMOL] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:181: warning: Member xyzfil[PBAMPARM_MAXMOL][PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.h:202: warning: Member pbam_3dmapstem[VMAX_ARGLEN] (variable) of struct sPBEparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.h:203: warning: Member pbam_3dmapflag (variable) of struct sPBEparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:112: warning: Member settolsp (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:113: warning: Member tolsp (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:115: warning: Member setmsms (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:116: warning: Member probe_radius (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:117: warning: Member density (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:119: warning: Member setsurf (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:120: warning: Member surfct (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:121: warning: Member surffil[PBSAMPARM_MAXMOL][CHR_MAXLEN] (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:123: warning: Member setimat (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:124: warning: Member imatct (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:125: warning: Member imatfil[PBSAMPARM_MAXMOL][CHR_MAXLEN] (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:127: warning: Member setexp (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:128: warning: Member expct (variable) of struct sPBSAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:129: warning: Member expfil[PBSAMPARM_MAXMOL][CHR_MAXLEN] (variable) of struct sPBSAMparm is not documented.
ing code for file src/pmgc/mikpckd.h...
Generating code for file src/pmgc/mlinpckd.c...
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Chapter 5.
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Chapter 6.
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Chapter 7.
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
e er-ror out-side the \T1/pcr/m/n/10 local" partition to zero.

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arz solves to

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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
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\T1/pcr/m/n/10 external buffer zone approximately equal in size to the local re
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\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

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\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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(longtable)                in table 7.204 on input line 286.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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(longtable)                in table 7.227 on input line 613.

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(longtable)                in table 7.228 on input line 643.


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(longtable)                in table 7.229 on input line 677.

[136]
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(longtable)                in table 7.230 on input line 709.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.235 on input line 867.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.241 on input line 1054.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.242 on input line 1085.

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Package longtable Warning: Column widths have changed
(longtable)                in table 7.243 on input line 1107.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.244 on input line 1129.


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Package longtable Warning: Column widths have changed
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) (./group___valist.tex [144]
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.246 on input line 121.

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Package longtable Warning: Column widths have changed
(longtable)                in table 7.247 on input line 143.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.248 on input line 165.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.249 on input line 192.

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Package longtable Warning: Column widths have changed
(longtable)                in table 7.250 on input line 217.


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Package longtable Warning: Column widths have changed
(longtable)                in table 7.251 on input line 242.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.253 on input line 292.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.255 on input line 362.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.257 on input line 428.


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Package longtable Warning: Column widths have changed
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) (./group___vatom.tex [150] [151]
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.259 on input line 143.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.263 on input line 256.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.265 on input line 305.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
(longtable)                in table 7.293 on input line 386.


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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
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he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
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[14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43]
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] (./index.tex
Chapter 1.
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[3] [4]
Chapter 2.

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[5]
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) (./deprecated.tex [7] [8]
Chapter 3.

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) [9] [10]
Chapter 4.
(./topics.tex) [11] [12]
Chapter 5.
(./annotated.tex [13]) [14]
Chapter 6.
(./files.tex [15] [16] [17]) [18]
Chapter 7.
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
e er-ror out-side the \T1/pcr/m/n/10 local" partition to zero.

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\T1/pcr/m/n/10 However, this leads to the need for a few final overlapping Schw
arz solves to

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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
/10 <$\T1/pcr/m/n/10 /tt$\OML/cmm/m/it/10 >$\T1/pcr/m/n/10 local" partition and
 an

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\T1/pcr/m/n/10 external buffer zone approximately equal in size to the local re
gion, then the

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\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

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\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
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[56]
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
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he Regents of the University of California. Portions Copyright (c) 1995, Michae
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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv
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) (./group___vpee.tex [55]
Underfull \hbox (badness 849) in paragraph at lines 45--46
\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
e er-ror out-side the \T1/pcr/m/n/10 local" partition to zero.

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 However, this leads to the need for a few final overlapping Schw
arz solves to

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
/10 <$\T1/pcr/m/n/10 /tt$\OML/cmm/m/it/10 >$\T1/pcr/m/n/10 local" partition and
 an

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 external buffer zone approximately equal in size to the local re
gion, then the

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
tion of MC\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s
[56]
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) (./group___a_p_o_lparm.tex [60] [61]
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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) (./group___vpmgp.tex [266]
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) (./group___p_m_g_c.tex [269] [270] [271] [272] [273]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 170--170
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 360--360
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 409--409
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

Underfull \hbox (badness 10000) detected at line 444
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[279]
Overfull \hbox (304.08286pt too wide) in paragraph at lines 523--523
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partment Energy.[] 

Underfull \hbox (badness 10000) detected at line 561
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 573--573
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 793--793
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 842--842
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[285] [286]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 1467--1467
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 1603--1603
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1655--1655
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2572--2572
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2814--2814
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3114--3114
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3206--3206
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

Underfull \hbox (badness 10000) detected at line 3243
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3258--3258
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3618--3618
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3670--3670
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3923--3923
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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[359]) (./group___frontend.tex
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
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[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
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[]

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\T1/phv/m/n/10 int nenergy[][][], dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 
atom[]Energy[][][], int nforce[][][],

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) [388]
Chapter 8.
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[389]) (./structs_a_p_o_lparm.tex
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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
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[394]) (./structs_b_e_mparm.tex [395]
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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
BUILD/apbs-3.[]0.[]0-build/apbs-3.[]0.[]0/src/generic/bemparm.[]

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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
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[404] [405] [406] [407]
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) (./structs_n_osh.tex [411]
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[412] [413] [414] [415] [416]) (./structs_n_osh__calc.tex [417]
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[418]) (./structs_p_b_a_mparm.tex
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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
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[419]
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[420] [421] [422] [423]) (./structs_p_b_eparm.tex
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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
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[424] [425]
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[432] [433]) (./structs_p_b_s_a_mparm.tex
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[434] [435]) (./structs_vacc.tex
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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
m/n/10 thee, Vio $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 sock, int $\OMS/cmsy/m/n/
10 ^^C$\T1/phv/m/n/10 serial, char atom[]

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[]\T1/phv/m/n/10 VPRIVATE void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 thee
, dou-ble lower[]_[]corner[][][], dou-ble upper[]_[]
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m
/n/10 thee, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 alist, dou-ble max[]_[]radi
us, int npts[][][],

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010, Pacific Northwest National Laboratory.  
Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
 Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2020, T
he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
) (./vmgrid_8c_source.tex [943] [944] [945]) (./vmgrid_8h.tex <./vmgrid_8h__inc
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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv
/m/n/10 alist[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], 
[] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]

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\T1/phv/m/n/10 YMap[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]ZMap[]
[][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 kappa[]Map[][][], []

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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 charge[]Map[][][], [] $\OMS/cmsy/m/n/10 ^^C
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[]
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[]\T1/phv/m/n/10 VPUBLIC void [] (Vmem $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 mem
, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh, int nforce[][][], [] $\OMS/cmsy
/m/n/10 ^^C$\T1/phv/m/n/10 atom[]

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\T1/phv/m/n/10 int nenergy[][][], dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 
atom[]Energy[][][], int nforce[][][],

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atom[]Energy[][][], int nforce[][][],

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[]\T1/phv/m/n/10 VPUBLIC int [] (Vcom $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 com,
 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh, int nforce[][][], [] $\OMS/cmsy/
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[1328]
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[]\T1/phv/m/n/10 VPUBLIC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T
1/phv/m/n/10 fetk[][][], Gem

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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbeparm, []

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[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/10
 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],

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[]\T1/phv/m/n/10 VEXTERNC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh
, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/1
0 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],

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[] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1
/phv/m/n/10 alist[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][]
[], []

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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 charge[]Map[][][], [] $\OMS/cmsy/m/n/10 ^^C
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[]

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atom[]Energy[][][], int nforce[][][],
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
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[1401]
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
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\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
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[67]
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) (./group___f_e_mparm.tex [68]
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) (./group___g_e_o_f_l_o_wparm.tex [72] [73]
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) (./group___m_gparm.tex [76] [77] [78]
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) (./group___n_osh.tex [86] [87] [88] [89] [90]
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Underfull \hbox (badness 10000) detected at line 584
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Underfull \hbox (badness 10000) detected at line 786
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Underfull \hbox (badness 10000) detected at line 1194
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Underfull \hbox (badness 10000) detected at line 1230
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Underfull \hbox (badness 10000) detected at line 1264
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Underfull \hbox (badness 10000) detected at line 1277
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) (./group___p_b_a_mparm.tex [104] [105]
Underfull \hbox (badness 10000) detected at line 116
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Underfull \hbox (badness 10000) detected at line 246
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Underfull \hbox (badness 10000) detected at line 317
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Underfull \hbox (badness 10000) detected at line 610
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Underfull \hbox (badness 10000) detected at line 634
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) (./group___p_b_eparm.tex [113] [114] [115]
Underfull \hbox (badness 10000) detected at line 209
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[118]
Underfull \hbox (badness 10000) detected at line 428
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) (./group___p_b_s_a_mparm.tex [119] [120]
Underfull \hbox (badness 10000) detected at line 100
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Underfull \hbox (badness 10000) detected at line 156
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Underfull \hbox (badness 10000) detected at line 181
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Underfull \hbox (badness 10000) detected at line 230
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Underfull \hbox (badness 10000) detected at line 373
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Underfull \hbox (badness 10000) detected at line 397
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Underfull \hbox (badness 10000) detected at line 409
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Underfull \hbox (badness 10000) detected at line 426
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) (./group___vacc.tex [125] [126] [127]
Underfull \hbox (badness 10000) detected at line 149
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Underfull \hbox (badness 10000) detected at line 207
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Underfull \hbox (badness 10000) detected at line 888
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Underfull \hbox (badness 10000) detected at line 944
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Underfull \hbox (badness 10000) detected at line 1072
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[143]) (./group___valist.tex [144]
Underfull \hbox (badness 10000) detected at line 91
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Underfull \hbox (badness 10000) detected at line 449
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) (./group___vatom.tex [150] [151]
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Underfull \hbox (badness 10000) detected at line 353
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Underfull \hbox (badness 10000) detected at line 428
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) (./group___vcap.tex
Underfull \hbox (badness 10000) detected at line 36
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Underfull \hbox (badness 10000) detected at line 94
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Underfull \hbox (badness 10000) detected at line 158
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Underfull \hbox (badness 10000) detected at line 164
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Underfull \hbox (badness 10000) detected at line 194
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Underfull \hbox (badness 10000) detected at line 352
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Underfull \hbox (badness 10000) detected at line 374
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Underfull \hbox (badness 10000) detected at line 377
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Underfull \hbox (badness 10000) detected at line 401
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Underfull \hbox (badness 10000) detected at line 423
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[168]) (./group___vgreen.tex [169]
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Underfull \hbox (badness 10000) detected at line 159
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Underfull \hbox (badness 10000) detected at line 258
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1655--1655
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2572--2572
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2814--2814
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3114--3114
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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[325]
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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3923--3923
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partment Energy.[] 

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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4119--4119
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4620--4620
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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Overfull \hbox (20.88268pt too wide) in paragraph at lines 4807--4807
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ated by Battelle Memorial Institute,[] 

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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4857--4857
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

Underfull \hbox (badness 10000) detected at line 4892
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 5004--5004
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 5056--5056
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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[359]) (./group___frontend.tex
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbeparm, []

Overfull \hbox (16.65858pt too wide) in paragraph at lines 40--41
[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/10
 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],

Overfull \hbox (16.91972pt too wide) in paragraph at lines 42--43
[]\T1/phv/m/n/10 VEXTERNC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh
, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/1
0 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],
[360]
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[] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1
/phv/m/n/10 alist[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][]
[], []

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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
m/n/10 thee, Vio $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 sock, int $\OMS/cmsy/m/n/
10 ^^C$\T1/phv/m/n/10 serial, char atom[]

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[]\T1/phv/m/n/10 VPRIVATE void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 thee
, dou-ble lower[]_[]corner[][][], dou-ble upper[]_[]
[806]
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m
/n/10 thee, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 alist, dou-ble max[]_[]radi
us, int npts[][][],

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010, Pacific Northwest National Laboratory.  
Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
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he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
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, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh, int nforce[][][], [] $\OMS/cmsy
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atom[]Energy[][][], int nforce[][][],

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 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh, int nforce[][][], [] $\OMS/cmsy/
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 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T
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, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/1
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mgmesh.c:10:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 57%] Linking C executable ../bin/mgmesh
[ 57%] Built target mgmesh
[ 58%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/smooth.c:13:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 59%] Linking C executable ../bin/smooth
[ 59%] Built target smooth
[ 60%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dxmath.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dxmath.c:41:10: warning: unused variable ‘format’ [-Wunused-variable]
   41 |     char format[VMAX_BUFSIZE];
      |          ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dxmath.c:13:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 62%] Linking C executable ../bin/dxmath
[ 62%] Built target dxmath
[ 63%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: ‘nx’ may be used uninitialized [-Wmaybe-uninitialized]
   81 |     mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:29:9: note: ‘nx’ was declared here
   29 |     int nx, ny, nz, count, numfnams;
      |         ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: ‘ny’ may be used uninitialized [-Wmaybe-uninitialized]
   81 |     mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:29:13: note: ‘ny’ was declared here
   29 |     int nx, ny, nz, count, numfnams;
      |             ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:81:13: warning: ‘nz’ may be used uninitialized [-Wmaybe-uninitialized]
   81 |     mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx.c:29:17: note: ‘nz’ was declared here
   29 |     int nx, ny, nz, count, numfnams;
      |                 ^~
[ 64%] Linking C executable ../bin/mergedx
[ 64%] Built target mergedx
[ 65%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/mergedx2.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 66%] Linking C executable ../bin/mergedx2
[ 66%] Built target mergedx2
[ 67%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/value.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/value.c:37:9: warning: unused variable ‘inorm’ [-Wunused-variable]
   37 |     int inorm;
      |         ^~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/value.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 68%] Linking C executable ../bin/value
[ 68%] Built target value
[ 70%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/multivalue.c:46:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 71%] Linking C executable ../bin/multivalue
[ 71%] Built target multivalue
[ 72%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:28:12: warning: unused variable ‘grid’ [-Wunused-variable]
   28 |     Vgrid *grid;
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:58: warning: unused variable ‘sum’ [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                                          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:51: warning: unused variable ‘value’ [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:44: warning: unused variable ‘pt’ [-Wunused-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:38: warning: variable ‘zmin’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                      ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:32: warning: variable ‘ymin’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                                ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:26: warning: variable ‘xmin’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                          ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:20: warning: variable ‘hzed’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                    ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:16: warning: variable ‘hx’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |                ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:18:12: warning: variable ‘hy’ set but not used [-Wunused-but-set-variable]
   18 |     double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:17:27: warning: unused variable ‘k’ [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                           ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:17:24: warning: unused variable ‘j’ [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                        ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:17:21: warning: unused variable ‘i’ [-Wunused-variable]
   17 |     int nx, ny, nz, i, j, k, itmp;
      |                     ^
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/benchmark.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 73%] Linking C executable ../bin/benchmark
[ 73%] Built target benchmark
[ 74%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:13:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:298:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  298 |             strncpy(scalar1Path, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:305:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  305 |             strncpy(scalar2Path, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:312:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  312 |             strncpy(transformPath, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:322:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  322 |             strncpy(mask1Path, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/similarity.c:329:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  329 |             strncpy(mask2Path, tstr, VMAX_ARGLEN);
      |             ^
[ 75%] Linking C executable ../bin/similarity
[ 75%] Built target similarity
[ 77%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:14:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:123:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  123 |             strncpy(scalarPath, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:133:13: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  133 |             strncpy(maskPath, tstr, VMAX_ARGLEN);
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:12: warning: ‘maxS’ may be used uninitialized [-Wmaybe-uninitialized]
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:12: warning: ‘minS’ may be used uninitialized [-Wmaybe-uninitialized]
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |            ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: ‘minSpt[2]’ may be used uninitialized [-Wmaybe-uninitialized]
  284 |     Vnm_print(1, "Min scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  285 |             minSpt[0], minSpt[1], minSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:18: note: ‘minSpt[2]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:286:5: warning: ‘maxG2’ may be used uninitialized [-Wmaybe-uninitialized]
  286 |     Vnm_print(1, "Max gradient-squared value               = %1.12E\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  287 |             maxG2);
      |             ~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:29: note: ‘maxG2’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                             ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:290:5: warning: ‘minG2’ may be used uninitialized [-Wmaybe-uninitialized]
  290 |     Vnm_print(1, "Min gradient-squared value               = %1.12E\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  291 |             minG2);
      |             ~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:29: note: ‘minG2’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                             ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: ‘minSpt[1]’ may be used uninitialized [-Wmaybe-uninitialized]
  284 |     Vnm_print(1, "Min scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  285 |             minSpt[0], minSpt[1], minSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:18: note: ‘minSpt[1]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:284:5: warning: ‘minSpt[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  284 |     Vnm_print(1, "Min scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  285 |             minSpt[0], minSpt[1], minSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:18: note: ‘minSpt[0]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: ‘maxG2pt[2]’ may be used uninitialized [-Wmaybe-uninitialized]
  288 |     Vnm_print(1, "Max gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  289 |             maxG2pt[0], maxG2pt[1], maxG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:36: note: ‘maxG2pt[2]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                                    ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: ‘maxG2pt[1]’ may be used uninitialized [-Wmaybe-uninitialized]
  288 |     Vnm_print(1, "Max gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  289 |             maxG2pt[0], maxG2pt[1], maxG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:36: note: ‘maxG2pt[1]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                                    ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:288:5: warning: ‘maxG2pt[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  288 |     Vnm_print(1, "Max gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  289 |             maxG2pt[0], maxG2pt[1], maxG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:36: note: ‘maxG2pt[0]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                                    ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: ‘maxSpt[2]’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |     Vnm_print(1, "Max scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  281 |             maxSpt[0], maxSpt[1], maxSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:18: note: ‘maxSpt[2]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: ‘maxSpt[1]’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |     Vnm_print(1, "Max scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  281 |             maxSpt[0], maxSpt[1], maxSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:18: note: ‘maxSpt[1]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:280:5: warning: ‘maxSpt[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |     Vnm_print(1, "Max scalar value location                = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  281 |             maxSpt[0], maxSpt[1], maxSpt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:85:18: note: ‘maxSpt[0]’ was declared here
   85 |     double maxS, maxSpt[3], maxG2, maxG2pt[3];
      |                  ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: ‘minG2pt[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  292 |     Vnm_print(1, "Min gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  293 |             minG2pt[0], minG2pt[1], minG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:36: note: ‘minG2pt[0]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                                    ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: ‘minG2pt[1]’ may be used uninitialized [-Wmaybe-uninitialized]
  292 |     Vnm_print(1, "Min gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  293 |             minG2pt[0], minG2pt[1], minG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:36: note: ‘minG2pt[1]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                                    ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:292:5: warning: ‘minG2pt[2]’ may be used uninitialized [-Wmaybe-uninitialized]
  292 |     Vnm_print(1, "Min gradient-squared value location      = (%4.3f, %4.3f, %4.3f)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  293 |             minG2pt[0], minG2pt[1], minG2pt[2]);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/analysis.c:86:36: note: ‘minG2pt[2]’ was declared here
   86 |     double minS, minSpt[3], minG2, minG2pt[3];
      |                                    ^~~~~~~
[ 78%] Linking C executable ../bin/analysis
[ 78%] Built target analysis
[ 79%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2mol.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2mol.c:28:12: warning: unused variable ‘avg’ [-Wunused-variable]
   28 |     double avg;
      |            ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2mol.c:19:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 80%] Linking C executable ../bin/dx2mol
[ 80%] Built target dx2mol
[ 81%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:25:10: warning: unused variable ‘avg’ [-Wunused-variable]
   25 |   double avg;
      |          ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:19: warning: unused variable ‘k’ [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |                   ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:16: warning: unused variable ‘j’ [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |                ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:13: warning: unused variable ‘i’ [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |             ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:24:10: warning: unused variable ‘u’ [-Wunused-variable]
   24 |   size_t u, i, j, k, nx, ny, nz;
      |          ^
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/dx2uhbd.c:17:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 82%] Linking C executable ../bin/dx2uhbd
[ 82%] Built target dx2uhbd
[ 83%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:45:64: warning: variable ‘extent’ set but not used [-Wunused-but-set-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |                                                                ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:45:50: warning: unused variable ‘xdata’ [-Wunused-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |                                                  ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:45:15: warning: unused variable ‘val’ [-Wunused-variable]
   45 |         float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3];
      |               ^~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:16:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:76:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   76 |         fread(&igrid, 1, sizeof(int), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:89:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |         fread(buffer, 1, sizeof(char) * 10, pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:97:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |         fread(data, tot_grid, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:103:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |         fread(&scale, 1, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/del2dx.c:106:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  106 |         fread(oldmid, 3, sizeof(float), pfile);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 85%] Linking C executable ../bin/del2dx
[ 85%] Built target del2dx
[ 86%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:42:19: warning: unused variable ‘index’ [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |                   ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:42:17: warning: unused variable ‘k’ [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |                 ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:42:15: warning: unused variable ‘j’ [-Wunused-variable]
   42 |         int i,j,k,index,icol;
      |               ^
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:14:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |         fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   98 |         fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  137 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  140 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |                 fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  156 |                 fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  157 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  158 |                 fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Linking C executable ../bin/tensor2dx
[ 87%] Built target tensor2dx
[ 88%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:3:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:79:9: warning: unused variable ‘dz_grid’ [-Wunused-variable]
   79 |     int dz_##mat = dz
      |         ^~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro ‘MAT3’
   24 |     MAT3(grid, MXGRD, MXGRD, MXGRD);
      |     ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   30 |     scanf("%s", flnm);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   42 |     scanf("%s", newfile);
      |     ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   54 |     fscanf(inFile, "%s", title);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   57 |     fscanf(inFile, "%lf", &scale);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |     fscanf(inFile, "%lf", &dum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   63 |     fscanf(inFile, "%d", &grdflg);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |     fscanf(inFile, "%d", &idum2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fscanf(inFile, "%d", &one);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |     fscanf(inFile, "%d", &im);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fscanf(inFile, "%d", &jm);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |     fscanf(inFile, "%d", &km);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |     fscanf(inFile, "%lf", &h);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   90 |     fscanf(inFile, "%lf", &ox);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |     fscanf(inFile, "%lf", &oy);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fscanf(inFile, "%lf", &oz);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   99 |     fscanf(inFile, "%lf", &dum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |     fscanf(inFile, "%lf", &dum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  105 |     fscanf(inFile, "%lf", &dum5);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     fscanf(inFile, "%lf", &dum6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(inFile, "%lf", &dum7);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  114 |     fscanf(inFile, "%lf", &dum8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  117 |     fscanf(inFile, "%d", &idum3);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  120 |     fscanf(inFile, "%d", &idum4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  125 |         fscanf(inFile, "%d", &kk);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |         fscanf(inFile, "%d", &im);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fscanf(inFile, "%d", &jm);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |                 fscanf(inFile, "%lf", RAT3(grid, i, j, k));
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Linking C executable ../bin/uhbd_asc2bin
[ 89%] Built target uhbd_asc2bin
[ 90%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/manip/coulomb.c: In function ‘main’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/manip/coulomb.c:20:12: warning: unused variable ‘j’ [-Wunused-variable]
   20 |     int i, j;
      |            ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/manip/coulomb.c:18:34: warning: unused variable ‘disp’ [-Wunused-variable]
   18 |     double *pos, energy, zmagic, disp[3], force[3];
      |                                  ^~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/manip/coulomb.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 91%] Linking C executable ../bin/coulomb
[ 91%] Built target coulomb
[ 93%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tools/manip/born.c:8:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 94%] Linking C executable ../bin/born
[ 94%] Built target born
[ 95%] Swig compile apbslib.i for python
[ 95%] Built target apbslib_swig_compilation
[ 96%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function ‘getPotentials’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3780:12: warning: unused variable ‘rc’ [-Wunused-variable]
 3780 |     int i, rc, nx, ny, nz;
      |            ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function ‘getForces’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3834:31: warning: unused variable ‘npholder’ [-Wunused-variable]
 3834 |     PyObject *npvalues, *np, *npholder;
      |                               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3834:26: warning: unused variable ‘np’ [-Wunused-variable]
 3834 |     PyObject *npvalues, *np, *npholder;
      |                          ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3834:15: warning: unused variable ‘npvalues’ [-Wunused-variable]
 3834 |     PyObject *npvalues, *np, *npholder;
      |               ^~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:64,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3260:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
[ 97%] Linking C shared library ../../lib/_apbslib.so
[ 97%] Built target _apbslib
[ 98%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:62:21: warning: argument 23 of type ‘double[1]’ with mismatched bound [-Warray-parameter=]
   62 |              double esenergy[1],
      |              ~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:19:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.h:173:30: note: previously declared as ‘double[20]’
  173 |                       double esEnergy[NOSH_MAXCALC],
      |                       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:63:21: warning: argument 24 of type ‘double[1]’ with mismatched bound [-Warray-parameter=]
   63 |              double npenergy[1],
      |              ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.h:174:30: note: previously declared as ‘double[20]’
  174 |                       double npEnergy[NOSH_MAXCALC],
      |                       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function ‘apbsdrv_’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:283:5: warning: multi-line comment [-Wcomment]
  283 |     //  Vnm_print(1,"\nError you must provide a parameter file if you\n" \
      |     ^
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:115:21: warning: unused variable ‘isolve’ [-Wunused-variable]
  115 |     int rank, size, isolve, debug, natom;
      |                     ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:103:11: warning: unused variable ‘gm’ [-Wunused-variable]
  103 |     void *gm[NOSH_MAXMOL];
      |           ^~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:102:11: warning: variable ‘fetk’ set but not used [-Wunused-but-set-variable]
  102 |     void *fetk[NOSH_MAXCALC];
      |           ^~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:90:14: warning: unused variable ‘feparm’ [-Wunused-variable]
   90 |     FEMparm *feparm = VNULL;
      |              ^~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:77,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:70,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:11:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h: At top level:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169:20: warning: ‘GEOFLOWparm_parseVDW’ declared ‘static’ but never defined [-Wunused-function]
  169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171:20: warning: ‘GEOFLOWparm_parseETOL’ declared ‘static’ but never defined [-Wunused-function]
  171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:78:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:251:20: warning: ‘PBAMparm_parseSalt’ declared ‘static’ but never defined [-Wunused-function]
  251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:260:20: warning: ‘PBAMparm_parseRunType’ declared ‘static’ but never defined [-Wunused-function]
  260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:269:20: warning: ‘PBAMparm_parseRunName’ declared ‘static’ but never defined [-Wunused-function]
  269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:278:20: warning: ‘PBAMparm_parseRandorient’ declared ‘static’ but never defined [-Wunused-function]
  278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:287:20: warning: ‘PBAMparm_parsePBCS’ declared ‘static’ but never defined [-Wunused-function]
  287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:296:20: warning: ‘PBAMparm_parseUnits’ declared ‘static’ but never defined [-Wunused-function]
  296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:305:20: warning: ‘PBAMparm_parse3Dmap’ declared ‘static’ but never defined [-Wunused-function]
  305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:314:20: warning: ‘PBAMparm_parseGrid2D’ declared ‘static’ but never defined [-Wunused-function]
  314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:323:20: warning: ‘PBAMparm_parseDX’ declared ‘static’ but never defined [-Wunused-function]
  323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:332:20: warning: ‘PBAMparm_parseGridPts’ declared ‘static’ but never defined [-Wunused-function]
  332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:341:20: warning: ‘PBAMparm_parseTermcombine’ declared ‘static’ but never defined [-Wunused-function]
  341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:350:20: warning: ‘PBAMparm_parseDiff’ declared ‘static’ but never defined [-Wunused-function]
  350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:359:20: warning: ‘PBAMparm_parseXYZ’ declared ‘static’ but never defined [-Wunused-function]
  359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.h:79:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:199:20: warning: ‘PBSAMparm_parseTolsp’ declared ‘static’ but never defined [-Wunused-function]
  199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:208:20: warning: ‘PBSAMparm_parseSurf’ declared ‘static’ but never defined [-Wunused-function]
  208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:217:20: warning: ‘PBSAMparm_parseImat’ declared ‘static’ but never defined [-Wunused-function]
  217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:226:20: warning: ‘PBSAMparm_parseExp’ declared ‘static’ but never defined [-Wunused-function]
  226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:235:20: warning: ‘PBSAMparm_parseMSMS’ declared ‘static’ but never defined [-Wunused-function]
  235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
      |                    ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:93:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:811:15: warning: ‘bcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  811 | VPRIVATE void bcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:834:15: warning: ‘bcolcomp2’ declared ‘static’ but never defined [-Wunused-function]
  834 | VPRIVATE void bcolcomp2(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:863:15: warning: ‘bcolcomp3’ declared ‘static’ but never defined [-Wunused-function]
  863 | VPRIVATE void bcolcomp3(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:885:15: warning: ‘bcolcomp4’ declared ‘static’ but never defined [-Wunused-function]
  885 | VPRIVATE void bcolcomp4(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:910:15: warning: ‘pcolcomp’ declared ‘static’ but never defined [-Wunused-function]
  910 | VPRIVATE void pcolcomp(
      |               ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:933:17: warning: ‘bspline2’ declared ‘static’ but never defined [-Wunused-function]
  933 | VPRIVATE double bspline2(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:942:17: warning: ‘dbspline2’ declared ‘static’ but never defined [-Wunused-function]
  942 | VPRIVATE double dbspline2(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:951:17: warning: ‘VFCHI4’ declared ‘static’ but never defined [-Wunused-function]
  951 | VPRIVATE double VFCHI4(
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:961:17: warning: ‘bspline4’ declared ‘static’ but never defined [-Wunused-function]
  961 | VPRIVATE double bspline4(
      |                 ^~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:970:17: warning: ‘dbspline4’ declared ‘static’ but never defined [-Wunused-function]
  970 | VPRIVATE double dbspline4(
      |                 ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:979:17: warning: ‘d2bspline4’ declared ‘static’ but never defined [-Wunused-function]
  979 | VPRIVATE double d2bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:988:17: warning: ‘d3bspline4’ declared ‘static’ but never defined [-Wunused-function]
  988 | VPRIVATE double d3bspline4(
      |                 ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:998:17: warning: ‘Vpmg_polarizEnergy’ declared ‘static’ but never defined [-Wunused-function]
  998 | VPRIVATE double Vpmg_polarizEnergy(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1009:17: warning: ‘Vpmg_qfEnergyPoint’ declared ‘static’ but never defined [-Wunused-function]
 1009 | VPRIVATE double Vpmg_qfEnergyPoint(
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1020:17: warning: ‘Vpmg_qfEnergyVolume’ declared ‘static’ but never defined [-Wunused-function]
 1020 | VPRIVATE double Vpmg_qfEnergyVolume(
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1031:15: warning: ‘Vpmg_splineSelect’ declared ‘static’ but never defined [-Wunused-function]
 1031 | VPRIVATE void Vpmg_splineSelect(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1047:15: warning: ‘focusFillBound’ declared ‘static’ but never defined [-Wunused-function]
 1047 | VPRIVATE void focusFillBound(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1058:15: warning: ‘bcfl1’ declared ‘static’ but never defined [-Wunused-function]
 1058 | VPRIVATE void bcfl1(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1080:15: warning: ‘bcfl2’ declared ‘static’ but never defined [-Wunused-function]
 1080 | VPRIVATE void bcfl2(
      |               ^~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1109:15: warning: ‘multipolebc’ declared ‘static’ but never defined [-Wunused-function]
 1109 | VPRIVATE void multipolebc(
      |               ^~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1126:17: warning: ‘bcfl1sp’ declared ‘static’ but never defined [-Wunused-function]
 1126 | VPRIVATE double bcfl1sp(
      |                 ^~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1139:15: warning: ‘bcCalc’ declared ‘static’ but never defined [-Wunused-function]
 1139 | VPRIVATE void bcCalc(
      |               ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1147:15: warning: ‘fillcoCoef’ declared ‘static’ but never defined [-Wunused-function]
 1147 | VPRIVATE void fillcoCoef(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1155:15: warning: ‘fillcoCoefMap’ declared ‘static’ but never defined [-Wunused-function]
 1155 | VPRIVATE void fillcoCoefMap(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1164:15: warning: ‘fillcoCoefMol’ declared ‘static’ but never defined [-Wunused-function]
 1164 | VPRIVATE void fillcoCoefMol(
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1173:15: warning: ‘fillcoCoefMolIon’ declared ‘static’ but never defined [-Wunused-function]
 1173 | VPRIVATE void fillcoCoefMolIon(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1182:15: warning: ‘fillcoCoefMolDiel’ declared ‘static’ but never defined [-Wunused-function]
 1182 | VPRIVATE void fillcoCoefMolDiel(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1191:15: warning: ‘fillcoCoefMolDielNoSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1208:15: warning: ‘fillcoCoefMolDielSmooth’ declared ‘static’ but never defined [-Wunused-function]
 1208 | VPRIVATE void fillcoCoefMolDielSmooth(
      |               ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1217:15: warning: ‘fillcoCoefSpline’ declared ‘static’ but never defined [-Wunused-function]
 1217 | VPRIVATE void fillcoCoefSpline(
      |               ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1226:15: warning: ‘fillcoCoefSpline3’ declared ‘static’ but never defined [-Wunused-function]
 1226 | VPRIVATE void fillcoCoefSpline3(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1235:15: warning: ‘fillcoCoefSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1235 | VPRIVATE void fillcoCoefSpline4(
      |               ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1244:20: warning: ‘fillcoCharge’ declared ‘static’ but never defined [-Wunused-function]
 1244 | VPRIVATE Vrc_Codes fillcoCharge(
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1253:20: warning: ‘fillcoChargeMap’ declared ‘static’ but never defined [-Wunused-function]
 1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
      |                    ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1261:15: warning: ‘fillcoChargeSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1261 | VPRIVATE void fillcoChargeSpline1(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1269:15: warning: ‘fillcoChargeSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1269 | VPRIVATE void fillcoChargeSpline2(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1277:15: warning: ‘fillcoPermanentMultipole’ declared ‘static’ but never defined [-Wunused-function]
 1277 | VPRIVATE void fillcoPermanentMultipole(
      |               ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1285:15: warning: ‘fillcoInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1285 | VPRIVATE void fillcoInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1294:15: warning: ‘fillcoNLInducedDipole’ declared ‘static’ but never defined [-Wunused-function]
 1294 | VPRIVATE void fillcoNLInducedDipole(
      |               ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1304:15: warning: ‘extEnergy’ declared ‘static’ but never defined [-Wunused-function]
 1304 | VPRIVATE void extEnergy(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1317:15: warning: ‘qfForceSpline1’ declared ‘static’ but never defined [-Wunused-function]
 1317 | VPRIVATE void qfForceSpline1(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1327:15: warning: ‘qfForceSpline2’ declared ‘static’ but never defined [-Wunused-function]
 1327 | VPRIVATE void qfForceSpline2(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1337:15: warning: ‘qfForceSpline4’ declared ‘static’ but never defined [-Wunused-function]
 1337 | VPRIVATE void qfForceSpline4(
      |               ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1351:15: warning: ‘zlapSolve’ declared ‘static’ but never defined [-Wunused-function]
 1351 | VPRIVATE void zlapSolve(
      |               ^~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1364:15: warning: ‘markSphere’ declared ‘static’ but never defined [-Wunused-function]
 1364 | VPRIVATE void markSphere(
      |               ^~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1384:17: warning: ‘Vpmg_qmEnergySMPBE’ declared ‘static’ but never defined [-Wunused-function]
 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385:17: warning: ‘Vpmg_qmEnergyNONLIN’ declared ‘static’ but never defined [-Wunused-function]
 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
      |                 ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function ‘setupString’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:943:26: warning: ‘write pot dx iapbs-pot-’ directive writing 23 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  943 |       sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid());
      |                          ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/maloc/maloc_base.h:80,
                 from /usr/include/maloc/maloc.h:38,
                 from /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/apbs.h:67:
In function ‘sprintf’,
    inlined from ‘setupString’ at /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:943:7:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 26 and 4131 bytes into a destination of size 4096
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2.h:30:10: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘string.1’ [-Wrestrict]
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function ‘setupString’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:803:17: note: destination object referenced by ‘restrict’-qualified argument 1 was declared here
  803 |     static char string[MAX_BUF_SIZE];
      |                 ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function ‘getElecEnergy’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:1060:29: warning: ‘scalar’ may be used uninitialized [-Wmaybe-uninitialized]
 1060 |         ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:1043:32: note: ‘scalar’ was declared here
 1043 |     double ltenergy, gtenergy, scalar;
      |                                ^~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c: In function ‘apbsdrv_’:
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:554:56: warning: ‘outputformat’ may be used uninitialized [-Wmaybe-uninitialized]
  554 |                 if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c:118:20: note: ‘outputformat’ was declared here
  118 |     Voutput_Format outputformat;
      |                    ^~~~~~~~~~~~
[100%] Linking C static library ../../../lib/libiapbs.a
[100%] Built target iapbs
make: Leaving directory '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qm4Q6M
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ '[' /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/apbs-3.0.0-build
+ mkdir /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd apbs-3.0.0
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build'
[  5%] Built target apbs_mg
[ 26%] Built target apbs_generic
[ 47%] Built target apbs_pmgc
[ 48%] Built target apbs
[ 49%] Built target apbs_routines
[ 52%] Built target apbs-bin
[ 54%] Generating documentation with Doxygen
warning: Tag 'TCL_SUBST' at line 213 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 857 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'HTML_TIMESTAMP' at line 953 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'FORMULA_TRANSPARENT' at line 1175 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1313 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 1565 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 1577 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1586 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 1616 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 1621 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 1770 of file '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: tag INPUT: input source '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/doc/license/LICENSE.txt' does not exist
warning: source '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/doc/license/LICENSE.txt' is not a readable file or directory... skipping.
Doxygen version used: 1.13.2
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Searching for files in directory /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src
Searching for files in directory /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem
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Searching for files in directory /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc
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Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildAd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildBd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildGd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/buildPd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/cgd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/gsd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/matvecd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgcsd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgdrvd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgfasd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mgsubd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mikpckd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mlinpckd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/mypdec.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newdrvd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/newtond.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/powerd.h...
Preprocessing /builddir/bui/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.h:7: warning: the name 'beparm.h' supplied as the argument in the \file statement is not an input file
ld/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/smoothd.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/smoothd.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/smoothd.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/pmgc/smoothd.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h...
Preprocessing /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/mainpage.h...
Parsing file /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc/programmer/mainpage.h...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Warn for undocumented namespaces...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating images for formulas in HTML...
Generating example documentation...
Generating file sources...
Generating code for file doc/programmer/mainpage.h...
Generating code for file src/apbs.h...
Generating code for file src/fem/vcsm.c...
Generating code for file src/fem/vcsm.h...
Generating code for file src/fem/vfetk.c...
Generating code for file src/fem/vfetk.h...
Generating code for file src/fem/vpee.c...
Generating code for file src/fem/vpee.h...
Generating code for file src/generic/apolparm.c...
Generating code for file src/generic/apolparm.h...
Generating code for file src/generic/bemparm.c...
Generating code for file src/generic/bemparm.h...
Generating code for file src/generic/femparm.c...
Generating code for file src/generic/femparm.h...
Generating code for file src/generic/geoflowparm.c...
Generating code for file src/generic/geoflowparm.h...
Generating code for file src/generic/mgparm.c...
Generating code for file src/generic/mgparm.h...
Generating code for file src/generic/nosh.c...
Generating code for file src/generic/nosh.h...
Generating code for file src/generic/pbamparm.c...
Generating code for file src/generic/pbamparm.h...
Generating code for file src/generic/pbeparm.c...
Generating code for file src/generic/pbeparm.h...
Generating code for file src/generic/pbsamparm.c...
Generating /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:2095: warning: Member polyEval(int numP, double p[], double c[][VMAXP], double xv[]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1528: warning: Member Vfetk_PDE_initElement(PDE *thee, int elementType, int chart, double tvx[][3], void *data) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1571: warning: Member Vfetk_PDE_initPoint(PDE *thee, int pointType, int chart, double txq[], double tU[], double tdU[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1741: warning: Member Vfetk_PDE_DFu_wv(PDE *thee, int key, double W[], double dW[][VAPBS_DIM], double V[], double dV[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1902: warning: Member Vfetk_PDE_bisectEdge(int dim, int dimII, int edgeType, int chart[], double vx[][3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1912: warning: Member Vfetk_PDE_mapBoundary(int dim, int dimII, int vertexType, int chart, double vx[3]) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1917: warning: Member Vfetk_PDE_markSimplex(int dim, int dimII, int simplexType, int faceType[VAPBS_NVS], int vertexType[VAPBS_NVS], int chart[], double vx[][3], void *simplex) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:1998: warning: Member Vfetk_PDE_oneChart(int dim, int dimII, int objType, int chart[], double vx[][3], int dimV) (function) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:86: warning: Member var (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:93: warning: Member diriCubeString (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:130: warning: Member neumCubeString (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:366: warning: Member dim_2DP1 (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:386: warning: Member lgr_2DP1[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:395: warning: Member lgr_2DP1x[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:402: warning: Member lgr_2DP1y[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:409: warning: Member lgr_2DP1z[3][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:437: warning: Member dim_3DP1 (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:438: warning: Member lgr_3DP1[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:446: warning: Member lgr_3DP1x[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:454: warning: Member lgr_3DP1y[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:462: warning: Member lgr_3DP1z[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:476: warning: Member P_DEG (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:482: warning: Member numP (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:483: warning: Member c[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:484: warning: Member cx[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:485: warning: Member cy[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vfetk.c:486: warning: Member cz[VMAXP][VMAXP] (variable) of file vfetk.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:498: warning: Member Vpee_userDefined(Vpee *thee, SS *sm) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:532: warning: Member Vpee_ourSimp(Vpee *thee, SS *sm, int rcol) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:66: warning: Member Aprx_estNonlinResid(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:72: warning: Member Aprx_estLocalProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.c:77: warning: Member Aprx_estDualProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:237: warning: Member APOLparm_parseGRID(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:268: warning: Member APOLparm_parseMOL(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:287: warning: Member APOLparm_parseSRFM(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:309: warning: Member APOLparm_parseSRAD(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:328: warning: Member APOLparm_parseSWIN(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:347: warning: Member APOLparm_parseTEMP(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:366: warning: Member APOLparm_parseGAMMA(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:385: warning: Member APOLparm_parseCALCENERGY(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:438: warning: Member APOLparm_parseCALCFORCE(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:491: warning: Member APOLparm_parseBCONC(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:510: warning: Member APOLparm_parseSDENS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:529: warning: Member APOLparm_parseDPOS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/apolparm.c:558: warning: Member APOLparm_parsePRESS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:210: warning: Member BEMparm_parseTREE_ORDER(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:233: warning: Member BEMparm_parseTREE_N0(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:256: warning: Member BEMparm_parseMAC(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:279: warning: Member BEMparm_parseMESH(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/bemparm.c:308: warning: Member BEMparm_parseOUTDATA(BEMparm *thee, Vio *sock) (function) of file bemparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:196: warning: Member FEMparm_parseDOMAINLENGTH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:221: warning: Member FEMparm_parseETOL(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:244: warning: Member FEMparm_parseEKEY(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:276: warning: Member FEMparm_parseAKEYPRE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:303: warning: Member FEMparm_parseAKEYSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:333: warning: Member FEMparm_parseTARGETNUM(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:352: warning: Member FEMparm_parseTARGETRES(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:372: warning: Member FEMparm_parseMAXSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:391: warning: Member FEMparm_parseMAXVERT(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/femparm.c:411: warning: Member FEMparm_parseUSEMESH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:138: warning: Member FUBAR(const char *name) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:143: warning: Member parseNonNeg(double *tf, double def, int *set, char *name, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:164: warning: Member GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.c:186: warning: Member GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:169: warning: Member GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:171: warning: Member GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock) (function) of file geoflowparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:415: warning: Member MGparm_parseDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:446: warning: Member MGparm_parseCHGM(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:497: warning: Member MGparm_parseNLEV(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:516: warning: Member MGparm_parseETOL(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:539: warning: Member MGparm_parseGRID(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:570: warning: Member MGparm_parseGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:601: warning: Member MGparm_parseGAMMA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:616: warning: Member MGparm_parseGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:668: warning: Member MGparm_parseCGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:699: warning: Member MGparm_parseFGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:730: warning: Member MGparm_parseCGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:782: warning: Member MGparm_parseFGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:834: warning: Member MGparm_parsePDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:872: warning: Member MGparm_parseOFRAC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:892: warning: Member MGparm_parseASYNC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/mgparm.c:912: warning: Member MGparm_parseUSEAQUA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:970: warning: Member NOsh_parseREAD(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1021: warning: Member NOsh_parsePRINT(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1187: warning: Member NOsh_parseELEC(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1313: warning: Member NOsh_parseAPOLAR(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2385: warning: Member NOsh_parseFEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1510: warning: Member NOsh_parseMG(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2845: warning: Member NOsh_parseBEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2934: warning: Member NOsh_parseGEOFLOW(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3048: warning: Member NOsh_parsePBAM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:3166: warning: Member NOsh_parsePBSAM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2508: warning: Member NOsh_parseAPOL(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1603: warning: Member NOsh_setupCalcMG(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1815: warning: Member NOsh_setupCalcMGAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1747: warning: Member NOsh_setupCalcMGMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2090: warning: Member NOsh_setupCalcMGPARA(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1722: warning: Member NOsh_setupCalcFEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2471: warning: Member NOsh_setupCalcFEMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1638: warning: Member NOsh_setupCalcBEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1666: warning: Member NOsh_setupCalcGEOFLOW(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1686: warning: Member NOsh_setupCalcPBAM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:1704: warning: Member NOsh_setupCalcPBSAM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2612: warning: Member NOsh_setupCalcBEMMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2677: warning: Member NOsh_setupCalcGEOFLOWMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2735: warning: Member NOsh_setupCalcPBAMAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2786: warning: Member NOsh_setupCalcPBSAMAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:2581: warning: Member NOsh_setupCalcAPOL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:598: warning: Member NOsh_parseREAD_MOL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:675: warning: Member NOsh_parseREAD_PARM(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:739: warning: Member NOsh_parseREAD_DIEL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:793: warning: Member NOsh_parseREAD_KAPPA(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:839: warning: Member NOsh_parseREAD_POTENTIAL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:884: warning: Member NOsh_parseREAD_CHARGE(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/nosh.c:930: warning: Member NOsh_parseREAD_MESH(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented.
code for file src/generic/pbsamparm.h...
Generating code for file src/generic/vacc.c...
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Generating docs for file src/generi/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:458: warning: Member PBAMparm_parseNtraj(PBAMparm *thee, Vio *sock) (function) of file pbamparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.c:549: warning: Member PBAMparm_parseTerm(PBAMparm *thee, Vio *sock) (function) of file pbamparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:77: warning: Member PBAMPARM_MAXWRITE (macro definition) of file pbamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:78: warning: Member PBAMPARM_MAXMOL (macro definition) of file pbamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:87: warning: Member PBEparm_getzmem(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:91: warning: Member PBEparm_getLmem(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:95: warning: Member PBEparm_getmembraneDiel(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:99: warning: Member PBEparm_getmemv(PBEparm *thee) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:368: warning: Member PBEparm_parseLPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:375: warning: Member PBEparm_parseNPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:382: warning: Member PBEparm_parseMOL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:401: warning: Member PBEparm_parseLRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:408: warning: Member PBEparm_parseNRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:415: warning: Member PBEparm_parseSMPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:474: warning: Member PBEparm_parseBCFL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:555: warning: Member PBEparm_parseION(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:652: warning: Member PBEparm_parsePDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:671: warning: Member PBEparm_parseSDENS(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:690: warning: Member PBEparm_parseSDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:709: warning: Member PBEparm_parseSRFM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:780: warning: Member PBEparm_parseSRAD(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:799: warning: Member PBEparm_parseSWIN(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:818: warning: Member PBEparm_parseTEMP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:837: warning: Member PBEparm_parseUSEMAP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:895: warning: Member PBEparm_parseCALCENERGY(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:948: warning: Member PBEparm_parseCALCFORCE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1005: warning: Member PBEparm_parseZMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1025: warning: Member PBEparm_parseLMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1044: warning: Member PBEparm_parseMDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1063: warning: Member PBEparm_parseMEMV(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1084: warning: Member PBEparm_parseWRITE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbeparm.c:1178: warning: Member PBEparm_parseWRITEMAT(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:77: warning: Member PBSAMPARM_MAXWRITE (macro definition) of file pbsamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbsamparm.h:78: warning: Member PBSAMPARM_MAXMOL (macro definition) of file pbsamparm.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:277: warning: Member Vacc_vdwAcc(Vacc *thee, double center[3]) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:307: warning: Member Vacc_ivdwAcc(Vacc *thee, double center[3], double radius) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:679: warning: Member Vacc_writeGMV(Vacc *thee, double radius, int meth, Gem *gm, char *iodev, char *iofmt, char *iohost, char *iofile) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1252: warning: Member Vacc_SASAPos(Vacc *thee, double radius) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:1277: warning: Member Vacc_atomSASAPos(Vacc *thee, double radius, Vatom *atom, int mode) (function) of file vacc.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:76: warning: The following parameter of ivdwAccExclus(Vacc *thee, double center[3], double radius, int atomID) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vacc.c:490: warning: The following parameter of splineAcc(Vacc *thee, double center[VAPBS_DIM], double win, double infrad, VclistCell *cell) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:186: warning: Member Valist_readPDBSerial(Valist *thee, Vio *sock, int *serial) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:206: warning: Member Valist_readPDBAtomName(Valist *thee, Vio *sock, char atomName[VMAX_ARGLEN]) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:224: warning: Member Valist_readPDBResidueName(Valist *thee, Vio *sock, char resName[VMAX_ARGLEN]) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:242: warning: Member Valist_readPDBResidueNumber(Valist *thee, Vio *sock, int *resSeq) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:298: warning: Member Valist_readPDBAtomCoord(Valist *thee, Vio *sock, double *coord) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:316: warning: Member Valist_readPDBChargeRadius(Valist *thee, Vio *sock, double *charge, double *radius) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:344: warning: Member Valist_readPDB_throughXYZ(Valist *thee, Vio *sock, int *serial, char atomName[VMAX_ARGLEN], char resName[VMAX_ARGLEN], int *resSeq, double *x, double *y, double *z) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:424: warning: Member Valist_getAtomStorage(Valist *thee, Vatom **plist, int *pnlist, int *pnatoms) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:480: warning: Member Valist_setAtomArray(Valist *thee, Vatom **plist, int nlist, int natoms) (function) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:60: warning: Member Valist_whiteChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:61: warning: Member Valist_commChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/valist.c:62: warning: Member Valist_xmlwhiteChars (variable) of file valist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:128: warning: Member VCLIST_INFLATE (macro definition) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:90: warning: Member Vclist_getMolDims(Vclist *thee, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM], double *r_max) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:125: warning: Member Vclist_setupGrid(Vclist *thee) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:174: warning: Member Vclist_storeParms(Vclist *thee, Valist *alist, double max_radius, int npts[VAPBS_DIM], Vclist_DomainMode mode, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM]) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:231: warning: Member Vclist_gridSpan(Vclist *thee, Vatom *atom, int imin[VAPBS_DIM], int imax[VAPBS_DIM]) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:262: warning: Member Vclist_arrayIndex(Vclist *thee, int i, int j, int k) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vclist.c:270: warning: Member Vclist_assignAtoms(Vclist *thee) (function) of file vclist.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:425: warning: Member treesetup(Vgreen *thee) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:505: warning: Member treecleanup(Vgreen *thee) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vgreen.c:525: warning: Member treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, double *qtar, int numtars, double *tpengtar, double *x, double *y, double *z, double *q, int numpars, double *fx, double *fy, double *fz, int iflag, int farrdim, int arrdim) (function) of file vgreen.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:458: warning: Member MAX_HASH_DIM (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:572: warning: Member OS_SEP_STR (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:573: warning: Member OS_SEP_CHAR (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:600: warning: Member ANNOUNCE_FUNCTION (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:601: warning: Member WARN_UNTESTED (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:602: warning: Member WARN_PARTTESTED (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:653: warning: Member VCHANNELEDMESSAGE0(channel, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:658: warning: Member VCHANNELEDMESSAGE1(channel, msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:665: warning: Member VCHANNELEDMESSAGE2(channel, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:672: warning: Member VCHANNELEDMESSAGE3(channel, msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:679: warning: Member VMESSAGE0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:680: warning: Member VMESSAGE1(msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:681: warning: Member VMESSAGE2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:682: warning: Member VMESSAGE3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:684: warning: Member VERRMSG0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:685: warning: Member VERRMSG1(msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:686: warning: Member VERRMSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:687: warning: Member VERRMSG3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:731: warning: Member VASSERT_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:741: warning: Member VASSERT_MSG1(cnd, msg, arg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:753: warning: Member VASSERT_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:825: warning: Member VWARN_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:838: warning: Member VWARN_MSG1(cnd, msg, arg0) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:853: warning: Member VWARN_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:899: warning: Member VABORT_MSG0(msg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:907: warning: Member VABORT_MSG1(msg, arg) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:917: warning: Member VABORT_MSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:944: warning: Member PRINT_INT(expr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:945: warning: Member PRINT_DBL(expr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:948: warning: Member VMALLOC(vmem, n, type) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:950: warning: Member VFREE(vmem, n, type, ptr) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:952: warning: Member VFILL(vec, n, val) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:959: warning: Member VCOPY(srcvec, dstvec, i, n) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:968: warning: Member VAT(array, i) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:969: warning: Member RAT(array, i) (macro definition) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:73: warning: Member Vrc_Codes (typedef) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:95: warning: Member Vsol_Meth (typedef) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vhal.h:966: warning: Member wrap_text(char *str, int right_margin, int left_padding) (function) of file vhal.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:64: warning: Member MAT2(mat, dx, dy) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:68: warning: Member RAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:71: warning: Member VAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:76: warning: Member MAT3(mat, dx, dy, dz) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:81: warning: Member RAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vmatrix.h:84: warning: Member VAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/vpbe.c:62: warning: Member MAX_SPLINE_WINDOW (macro definition) of file vpbe.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:67: warning: Member IJK(i, j, k) (macro definition) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:77: warning: Member MCwhiteChars (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:78: warning: Member MCcommChars (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:79: warning: Member Vcompare (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vgrid.c:80: warning: Member Vprecision[26] (variable) of file vgrid.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vopot.c:113: warning: Member IJK(i, j, k) (macro definition) of file vopot.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:1401: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:2828: warning: Member bcCalcOrig(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3130: warning: Member gridPointIsValid(int i, int j, int k, int nx, int ny, int nz) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3313: warning: Member packAtoms(double *ax, double *ay, double *az, double *charge, double *size, Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3338: warning: Member packUnpack(int nx, int ny, int nz, int ngrid, double *gx, double *gy, double *gz, double *value, Vpmg *thee, int pack) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3407: warning: Member bcflnew(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3597: warning: Member bcfl_sdh(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3868: warning: Member bcfl_mdh(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:3995: warning: Member bcfl_mem(double zmem, double L, double eps_m, double eps_w, double V, double xkappa, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:4174: warning: Member bcfl_map(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:6684: warning: Member markFrac(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *xarray, double *yarray, double *zarray) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.c:10260: warning: Member fillcoPermanentInduced(Vpmg *thee) (function) of file vpmg.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1056: warning: The following parameter of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) is not documented:
  parameter 'size'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: argument 'hz' of command @param is not found in the argument list of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: The following parameter of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) is not documented:
  parameter 'rtot'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1107: warning: The following parameter of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) is not documented:
  parameter 'r'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1315: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1325: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1335: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:995: warning: The following parameter of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1006: warning: The following parameter of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1017: warning: The following parameter of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1029: warning: The following parameter of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) is not documented:
  parameter 'srfm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1348: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented:
  parameter 'thee'
  parameter 'solution'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:105: warning: Member VPMGMAXPART (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1392: warning: Member VCUB(x) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1393: warning: Member VLOG(x) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1395: warning: Member IJK(i, j, k) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1396: warning: Member IJKx(j, k, i) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1397: warning: Member IJKy(i, k, j) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1398: warning: Member IJKz(i, j, k) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1399: warning: Member VFCHI(iint, iflt) (macro definition) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1385: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.h is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1056: warning: The following parameter of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) is not documented:
  parameter 'size'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1362: warning: The following parameter of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) is not documented:
  parameter 'rtot'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1107: warning: The following parameter of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) is not documented:
  parameter 'r'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1315: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1325: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1335: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented:
  parameter 'thee'
  parameter 'force'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:995: warning: The following parameter of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1006: warning: The following parameter of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1017: warning: The following parameter of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) is not documented:
  parameter 'thee'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1029: warning: The following parameter of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) is not documented:
  parameter 'srfm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmg.h:1348: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented:
  parameter 'thee'
  parameter 'solution'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/mg/vpmgp.c:294: warning: Member coarsenThis(int nOld) (function) of file vpmgp.c is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.h:17: warning: end of comment block while expecting command </tt> (Probable start '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/fem/vpee.h' at line 9)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:247: warning: argument 'parm' of command @param is not found in the argument list of PBAMparm_parseSalt(PBAMparm *thee, Vio *sock)
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:247: warning: The following parameter of PBAMparm_parseSalt(PBAMparm *thee, Vio *sock) is not documented:
  parameter 'sock'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:513: warning: The following parameter of energyAPOL(APOLparm *apolparm, double sasa, double sav, double atomsasa[], double atomwcaEnergy[], int numatoms) is not documented:
  parameter 'apolparm'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:610: warning: The following parameter of killFE(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vfetk *fetk[NOSH_MAXCALC], Gem *gem[NOSH_MAXMOL]) is not documented:
  parameter 'nosh'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:262: warning: The following parameter of killMG(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vpmgp *pmgp[NOSH_MAXCALC], Vpmg *pmg[NOSH_MAXCALC]) is not documented:
  parameter 'nosh'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:882: warning: argument 'charge' of command @param is not found in the argument list of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:882: warning: The following parameter of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:662: warning: argument 'kappa' of command @param is not found in the argument list of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:662: warning: The following parameter of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:791: warning: argument 'pot' of command @param is not found in the argument list of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:791: warning: The following parameter of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) is not documented:
  parameter 'map'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:622: warning: argument 'nosh' of command @param is not found in the argument list of preRefineFE(int i, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:494: warning: The following parameter of printApolForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:445: warning: The following parameter of printElecEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:481: warning: The following parameter of printElecForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:432: warning: The following parameter of printEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.h:468: warning: The following parameter of printForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) is not documented:
  parameter 'com'
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/routines.c:4125: warning: argument 'i' of command @param is not found in the argument list of solveFE(int icalc, PBEparm *pbeparm, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC])
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:104: warning: Member vdw (variable) of struct sGEOFLOWparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/geoflowparm.h:105: warning: Member setvdw (variable) of struct sGEOFLOWparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:111: warning: Member salt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:112: warning: Member setsalt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:115: warning: Member runtype[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:116: warning: Member setruntype (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:119: warning: Member runname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:120: warning: Member setrunname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:123: warning: Member setrandorient (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:126: warning: Member pbcboxlen (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:127: warning: Member setpbcs (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:130: warning: Member units[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:131: warning: Member setunits (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:137: warning: Member gridpt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:138: warning: Member setgridpt (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:141: warning: Member map3dname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:142: warning: Member set3dmap (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:145: warning: Member grid2Dname[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:146: warning: Member grid2Dax[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:147: warning: Member grid2Dloc[PBAMPARM_MAXWRITE] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:148: warning: Member grid2Dct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:149: warning: Member setgrid2Dname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:152: warning: Member dxname[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:153: warning: Member setdxname (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:158: warning: Member ntraj (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:159: warning: Member setntraj (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:161: warning: Member termcombine[CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:162: warning: Member settermcombine (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:164: warning: Member diffct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:165: warning: Member moveType[PBAMPARM_MAXMOL][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:166: warning: Member transDiff[PBAMPARM_MAXMOL] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:167: warning: Member rotDiff[PBAMPARM_MAXMOL] (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:169: warning: Member termct (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:170: warning: Member setterm (variable) of struct sPBAMparm is not documented.
/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/src/generic/pbamparm.h:172: warning: Member termnam[PBAMPARM_MAXWRITE][CHR_MAXLEN] (variable) of struct sPBAMparm is not documented.
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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) (./group___n_osh.tex [86] [87] [88] [89]

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Package longtable Warning: Column widths have changed
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Package longtable Warning: Column widths have changed
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
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) (./deprecated.tex [7] [8]
Chapter 3.

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) [9] [10]
Chapter 4.
(./topics.tex) [11] [12]
Chapter 5.
(./annotated.tex [13]) [14]
Chapter 6.
(./files.tex [15] [16] [17]) [18]
Chapter 7.
(./group___header.tex) (./group___vcsm.tex [19]
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) (./group___vpee.tex [55]
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
e er-ror out-side the \T1/pcr/m/n/10 local" partition to zero.

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\T1/pcr/m/n/10 However, this leads to the need for a few final overlapping Schw
arz solves to

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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
/10 <$\T1/pcr/m/n/10 /tt$\OML/cmm/m/it/10 >$\T1/pcr/m/n/10 local" partition and
 an

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\T1/pcr/m/n/10 external buffer zone approximately equal in size to the local re
gion, then the

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\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

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\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
tion of MC\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s
[56]
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
 Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2020, T
he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv
/m/n/10 alist[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], 
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) (./group___vpee.tex [55]
Underfull \hbox (badness 849) in paragraph at lines 45--46
\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
e er-ror out-side the \T1/pcr/m/n/10 local" partition to zero.

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 However, this leads to the need for a few final overlapping Schw
arz solves to

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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
/10 <$\T1/pcr/m/n/10 /tt$\OML/cmm/m/it/10 >$\T1/pcr/m/n/10 local" partition and
 an

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\T1/pcr/m/n/10 external buffer zone approximately equal in size to the local re
gion, then the

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

Underfull \hbox (badness 10000) in paragraph at lines 45--46
\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
tion of MC\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s
[56]
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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) (./group___vpmgp.tex [266]
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) (./group___p_m_g_c.tex [269] [270] [271] [272] [273]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 170--170
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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partment Energy.[] 

Underfull \hbox (badness 10000) detected at line 561
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 573--573
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 793--793
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 842--842
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[285] [286]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 1467--1467
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partment Energy.[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 1603--1603
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1655--1655
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1950--1950
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2572--2572
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2814--2814
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3258--3258
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3670--3670
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3923--3923
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

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Overfull \hbox (304.08286pt too wide) in paragraph at lines 4067--4067
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4119--4119
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
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[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
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\T1/phv/m/n/10 int nenergy[][][], dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 
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Chapter 8.
(./struct_atom_force.tex
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[389]) (./structs_a_p_o_lparm.tex
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[394]) (./structs_b_e_mparm.tex [395]
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[]\T1/pcr/m/n/10 #include $\OML/cmm/m/it/10 <$\T1/pcr/m/n/10 /builddir/build/[]
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[404] [405] [406] [407]
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) (./structs_n_osh.tex [411]
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[412] [413] [414] [415] [416]) (./structs_n_osh__calc.tex [417]
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[418]) (./structs_p_b_a_mparm.tex
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[419]
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[420] [421] [422] [423]) (./structs_p_b_eparm.tex
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[424] [425]
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[432] [433]) (./structs_p_b_s_a_mparm.tex
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[434] [435]) (./structs_vacc.tex
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[441]) (./structs_vclist.tex
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[442] [443]) (./structs_vclist_cell.tex
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[447] [448]) (./structs_vfetk___local_var.tex [449]
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[483]) [484]
Chapter 9.
(./mainpage_8h_source.tex) (./apbs_8h.tex <./apbs_8h__incl.pdf> <./apbs_8h__dep
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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
m/n/10 thee, Vio $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 sock, int $\OMS/cmsy/m/n/
10 ^^C$\T1/phv/m/n/10 serial, char atom[]

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[]\T1/phv/m/n/10 VPRIVATE void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 thee
, dou-ble lower[]_[]corner[][][], dou-ble upper[]_[]
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m
/n/10 thee, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 alist, dou-ble max[]_[]radi
us, int npts[][][],

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[836] [837] [838] [839] [840] [841] [842]) (./vhal_8h_source.tex [843] [844]
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 []\T1/pcr/m/n/8 * Copyright (c) 2010, Pacific Northwest National Laboratory.  
Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
 Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2020, T
he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
) (./vmgrid_8c_source.tex [943] [944] [945]) (./vmgrid_8h.tex <./vmgrid_8h__inc
l.pdf> <./vmgrid_8h__dep__incl.pdf> [946] [947]
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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv
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[]\T1/phv/m/n/10 VPUBLIC void [] (Vmem $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 mem
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[]\T1/phv/m/n/10 VPUBLIC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
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[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
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[]\T1/phv/m/n/10 VEXTERNC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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\T1/phv/m/n/10 Holst par-al-lel re-fine-ment rou-tine es-sen-tially re-duces th
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\T1/pcr/m/n/10 However, this leads to the need for a few final overlapping Schw
arz solves to

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\T1/pcr/m/n/10 smooth out the errors near partition boundaries. Supposedly, if 
the region in

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\T1/pcr/m/n/10 which we allow error-based refinement includes the$\OML/cmm/m/it
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\T1/pcr/m/n/10 solution will asymptotically approach the solution obtained via 
more typical

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\T1/pcr/m/n/10 methods. This is essentially a more flexible parallel implementa
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) (./group___n_osh.tex [86] [87] [88] [89] [90]
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) (./group___p_b_a_mparm.tex [104] [105]
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[143]) (./group___valist.tex [144]
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[168]) (./group___vgreen.tex [169]
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[]                                                                        \T1/p
cr/m/n/8 permittivity equal to the protein interior) and zero ionic[] 

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1655--1655
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[299]
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 1950--1950
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[304]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 2089--2089
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[306]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2138--2138
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

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Overfull \hbox (304.08286pt too wide) in paragraph at lines 2333--2333
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[310]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2382--2382
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[311]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2572--2572
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[314]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 2765--2765
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[317]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 2814--2814
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[318]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3065--3065
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[322]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3114--3114
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[323]
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[324]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3206--3206
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

Underfull \hbox (badness 10000) detected at line 3243
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3258--3258
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[325]
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[327] [328] [329]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3618--3618
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partment Energy.[] 
[332]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 3670--3670
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[333]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 3923--3923
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

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Overfull \hbox (304.08286pt too wide) in paragraph at lines 4067--4067
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[339]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4119--4119
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
[340]
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 4571--4571
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 
[348]
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4620--4620
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

Underfull \hbox (badness 10000) detected at line 4653
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Overfull \hbox (20.88268pt too wide) in paragraph at lines 4807--4807
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ated by Battelle Memorial Institute,[] 

Underfull \hbox (badness 10000) detected at line 4845
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Overfull \hbox (1744.08377pt too wide) in paragraph at lines 4857--4857
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

Underfull \hbox (badness 10000) detected at line 4892
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Overfull \hbox (304.08286pt too wide) in paragraph at lines 5004--5004
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ated by Battelle Memorial Institute, Pacific Northwest Division for the U.S. De
partment Energy.[] 

Underfull \hbox (badness 10000) detected at line 5041
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[355]
Overfull \hbox (1744.08377pt too wide) in paragraph at lines 5056--5056
 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 

Underfull \hbox (badness 10000) detected at line 5091
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[359]) (./group___frontend.tex
Underfull \hbox (badness 2495) in paragraph at lines 32--33
[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] (int icalc, [] $\OMS/cmsy/m/n/10 ^^
C$\T1/phv/m/n/10 nosh, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 feparm, [] $\OMS
/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbeparm, []

Overfull \hbox (16.65858pt too wide) in paragraph at lines 40--41
[]\T1/phv/m/n/10 VEXTERNC int [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh,
 [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/10
 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],

Overfull \hbox (16.91972pt too wide) in paragraph at lines 42--43
[]\T1/phv/m/n/10 VEXTERNC void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 nosh
, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][][], [] $\OMS/cmsy/m/n/1
0 ^^C$\T1/phv/m/n/10 diel[]YMap[][][],
[360]
Underfull \hbox (badness 1910) in paragraph at lines 60--61
[] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1
/phv/m/n/10 alist[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 diel[]XMap[][]
[], []

Underfull \hbox (badness 1237) in paragraph at lines 60--61
\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 charge[]Map[][][], [] $\OMS/cmsy/m/n/10 ^^C
$\T1/phv/m/n/10 pmgp[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pmg[][][], 
[]

Underfull \hbox (badness 5817) in paragraph at lines 78--79
\T1/phv/m/n/10 int nenergy[][][], dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 
atom[]Energy[][][], int nforce[][][],

Underfull \hbox (badness 5817) in paragraph at lines 80--81
\T1/phv/m/n/10 int nenergy[][][], dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 
atom[]Energy[][][], int nforce[][][],
[361] [362]
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[]\T1/phv/m/n/10 VPRIVATE Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/
m/n/10 thee, Vio $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 sock, int $\OMS/cmsy/m/n/
10 ^^C$\T1/phv/m/n/10 serial, char atom[]

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[]\T1/phv/m/n/10 VPRIVATE void [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 thee
, dou-ble lower[]_[]corner[][][], dou-ble upper[]_[]
[806]
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[]\T1/phv/m/n/10 VPUBLIC Vrc[]_[][]Codes [] ([] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m
/n/10 thee, [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 alist, dou-ble max[]_[]radi
us, int npts[][][],

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 []\T1/pcr/m/n/8 * Copyright (c) 2010-2020 Battelle Memorial Institute. Develop
ed at the Pacific Northwest National Laboratory, operated by Battelle Memorial 
Institute, Pacific Northwest Division for the U.S. Department Energy.  Portions
 Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyrig
ht (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regen
ts of the University of California. Portions Copyright (c) 1995, Michael Holst.
[] 
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 []\T1/pcr/m/n/8 * Copyright (c) 2010, Pacific Northwest National Laboratory.  
Portions Copyright (c) 2002-2020, Washington University in St. Louis.  Portions
 Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2020, T
he Regents of the University of California. Portions Copyright (c) 1995, Michae
l Holst.[] 
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\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 pbe[][][], [] $\OMS/cmsy/m/n/10 ^^C$\T1/phv
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmmi8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/shar
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dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
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lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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Output written on refman.pdf (1515 pages, 6429509 bytes).
Transcript written on refman.log.
[ 55%] Built target doc-pdf
[ 57%] Built target mgmesh
[ 59%] Built target smooth
[ 62%] Built target dxmath
[ 64%] Built target mergedx
[ 66%] Built target mergedx2
[ 68%] Built target value
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[ 94%] Built target born
[ 95%] Built target apbslib_swig_compilation
[ 97%] Built target _apbslib
[100%] Built target iapbs
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-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/main_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/mgparm_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/mgparm_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/nosh_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/nosh_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbamparm_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbamparm_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbeparm_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbeparm_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbsamparm_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/pbsamparm_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/routines_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/routines_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vacc_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vacc_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/valist_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/valist_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vatom_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vatom_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vcap_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vcap_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vclist_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vclist_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vcsm_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vcsm_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vfetk_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vfetk_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vgreen_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vgreen_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vgrid_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vgrid_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vhal_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vmatrix_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vmgrid_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vmgrid_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vopot_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vopot_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vparam_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vparam_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpbe_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpbe_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpee_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpee_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpmg_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpmg_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpmgp_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vpmgp_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vstring_8c.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vstring_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/html/vunit_8h.html
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/doc/programmer/programmer.pdf
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/mgmesh
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/smooth
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/dxmath
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/mergedx
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/mergedx2
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/value
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/multivalue
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/benchmark
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/similarity
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/analysis
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/dx2mol
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/dx2uhbd
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/del2dx
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/tensor2dx
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/uhbd_asc2bin
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/coulomb
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs/tools/bin/born
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/libapbs.so.1
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/libapbs.so.1" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/libapbs.so
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/apbscfg.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/apbs.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/routines.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/nosh.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/mgparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/femparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/pbamparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/pbsamparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/pbeparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/bemparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/geoflowparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/apolparm.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vacc.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/valist.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vatom.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vpbe.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vcap.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vclist.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vstring.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vparam.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vgreen.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vmatrix.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vhal.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/generic/vunit.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/buildAd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/buildBd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/buildGd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/buildPd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/cgd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/gsd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/matvecd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mgcsd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mgdrvd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mgsubd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mikpckd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mlinpckd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mypdec.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/newtond.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/newdrvd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/powerd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/smoothd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/pmgc/mgfasd.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/mg/vgrid.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/mg/vmgrid.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/mg/vopot.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/mg/vpmg.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/apbs/mg/vpmgp.h
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mgmesh
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mgmesh" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/smooth
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/smooth" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dxmath
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dxmath" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx2
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx2" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/value
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/value" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/multivalue
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/multivalue" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/benchmark
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/benchmark" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/similarity
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/similarity" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/analysis
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/analysis" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2mol
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2mol" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2uhbd
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2uhbd" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/del2dx
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/del2dx" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/tensor2dx
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/tensor2dx" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/uhbd_asc2bin
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/uhbd_asc2bin" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/coulomb
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/coulomb" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/born
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/born" to "/usr/lib"
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib/libiapbs.a
-- Installing: /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/include/iapbs/apbs_driver.h
make: Leaving directory '/builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build'
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/coulomb
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/coulomb /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-coulomb
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/coulomb
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/born
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/born /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-born
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/born
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mgmesh
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mgmesh /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mgmesh
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mgmesh
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dxmath
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dxmath /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dxmath
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dxmath
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx2
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx2 /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mergedx2
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx2
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mergedx
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/mergedx
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/value
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/value /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-value
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/value
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/uhbd_asc2bin
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/uhbd_asc2bin /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-uhbd_asc2bin
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/uhbd_asc2bin
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/smooth
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/smooth /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-smooth
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/smooth
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2mol
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2mol /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dx2mol
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2mol
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2uhbd
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2uhbd /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dx2uhbd
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/dx2uhbd
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/similarity
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/similarity /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-similarity
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/similarity
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/multivalue
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/multivalue /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-multivalue
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/multivalue
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/benchmark
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/benchmark /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-benchmark
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/benchmark
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/analysis
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/analysis /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-analysis
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/analysis
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/del2dx
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/del2dx /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-del2dx
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/del2dx
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
++ basename /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/tensor2dx
+ cp -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/tensor2dx /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-tensor2dx
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/tensor2dx
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-coulomb
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-born
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mgmesh
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dxmath
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mergedx2
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-mergedx
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-value
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-uhbd_asc2bin
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-smooth
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dx2mol
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-dx2uhbd
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-similarity
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-multivalue
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-benchmark
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-analysis
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-del2dx
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ for bin in /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx}
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-tensor2dx
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs
+ chrpath -d /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/libapbs.so.1
+ mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs
+ install -pm 755 tools/manip/psize.py /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs/
+ /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs/psize.py
/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs/psize.py: updating
+ ln -s /usr/lib64/python3.13/site-packages/apbs/psize.py /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/bin/apbs-psize.py
+ install -pm 755 build/lib/_apbslib.so /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs/
+ rm -rf /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/apbs
++ find /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT -type f '(' -name '*.a' ')'
+ for i in `find /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT -type f \( -name "*.a" \)`
+ rm -f /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib/libiapbs.a
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.0.0-26.fc42 --unique-debug-suffix -3.0.0-26.fc42.x86_64 --unique-debug-src-base apbs-3.0.0-26.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0
find-debuginfo: starting
Extracting debug info from 20 files
DWARF-compressing 20 files
sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/apbs-3.0.0-26.fc42.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT
/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/apbs/__pycache__/psize.cpython-313.pyc: rewriting with normalized contents
Scanned 45 directories and 198 files,
               processed 1 inodes,
               1 modified (0 replaced + 1 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/apbs-3.0.0-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.L10nFy
+ umask 022
~/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/tests ~/build/BUILD/apbs-3.0.0-build/apbs-3.0.0
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fcommon -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd apbs-3.0.0
+ pushd tests
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/lib64
+ /usr/bin/python3 ./apbs_tester.py
Testing all sections
The following sections will be tested: born, actin-dimer-auto, actin-dimer-parallel, alkanes, FKBP, hca-bind, ionize, ion-pmf, ion-protein, pka-lig, point-pmf, solv
================================================================================
Running tests for born section
--------------------------------------------------------------------------------
Testing forces from apbs-forces.in

Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.000635 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-auto.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.607073836227E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.200266567971E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to potential.dx.gz
  Total electrostatic energy = 4.732245131587E+03 kJ/mol
  Calculating forces...
  Writing potential to potential.dx.gz
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.297735526282E+02 kJ/mol
  Global net ELEC energy = -2.297735526282E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-auto.out
RESULT 960.7073836227
RESULT 2200.266567971
RESULT 4732.245131587
RESULT 1190.871482831
RESULT 2430.874049735
RESULT 4962.018684215
RESULT -229.7735526282
Testing computed result 9.607073836227E+02 against expected result 9.607074E+02
*** PASSED ***
Testing computed result 2.200266567971E+03 against expected result 2.200267E+03
*** PASSED ***
Testing computed result 4.732245131587E+03 against expected result 4.732245E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 2.430874049735E+03 against expected result 2.430874E+03
*** PASSED ***
Testing computed result 4.962018684215E+03 against expected result 4.962019E+03
*** PASSED ***
Testing computed result -2.297735526282E+02 against expected result -2.297735E+02
*** PASSED ***
Elapsed time: 1.072445 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-auto.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.532928767450E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.201243880085E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.733006258977E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.190871482831E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.383 x 0.383 x 0.383
  Grid lengths: 24.495 x 24.495 x 24.495
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.430874049735E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.962018684215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -2.290124252387E+02 kJ/mol
  Global net ELEC energy = -2.290124252387E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-auto.out
RESULT 953.292876745
RESULT 2201.243880085
RESULT 4733.006258977
RESULT 1190.871482831
RESULT 2430.874049735
RESULT 4962.018684215
RESULT -229.0124252387
Testing computed result 9.532928767450E+02 against expected result 9.532929E+02
*** PASSED ***
Testing computed result 2.201243880085E+03 against expected result 2.201244E+03
*** PASSED ***
Testing computed result 4.733006258977E+03 against expected result 4.733006E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 2.430874049735E+03 against expected result 2.430874E+03
*** PASSED ***
Testing computed result 4.962018684215E+03 against expected result 4.962019E+03
*** PASSED ***
Testing computed result -2.290124252387E+02 against expected result -2.290124E+02
*** PASSED ***
Elapsed time: 0.888108 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE0.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935592471E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255308186E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864094552E+01 kJ/mol
  Global net ELEC energy = -5.761864094552E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE0.out
Processor 0 results:
  2.401768459022E+02
  8.142935592471E+02
  1.485255308186E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.761864094552E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE1.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459022E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778312125E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246667424E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728170718E+01 kJ/mol
  Global net ELEC energy = -5.762728170718E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE1.out
Processor 1 results:
  2.401768459022E+02
  8.142778312125E+02
  1.485246667424E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.762728170718E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE2.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142935605696E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485255306569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.761864257239E+01 kJ/mol
  Global net ELEC energy = -5.761864257239E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE2.out
Processor 2 results:
  2.401768459091E+02
  8.142935605696E+02
  1.485255306569E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.761864257239E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE3.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.401768459091E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.142778325440E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485246665692E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.762728344954E+01 kJ/mol
  Global net ELEC energy = -5.762728344954E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE3.out
Processor 3 results:
  2.401768459091E+02
  8.142778325440E+02
  1.485246665692E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.762728344954E+01

RESULT 960.7073836226
RESULT 3257.1427835731997
RESULT 5941.0039478710005
RESULT 1190.8714828309999
RESULT 3519.7218230368003
RESULT 6171.495796544
RESULT -230.49184867463003
Testing computed result 9.607073836226E+02 against expected result 9.607074E+02
*** PASSED ***
Testing computed result 3.257142783573E+03 against expected result 3.257143E+03
*** PASSED ***
Testing computed result 5.941003947871E+03 against expected result 5.941004E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 3.519721823037E+03 against expected result 3.519722E+03
*** PASSED ***
Testing computed result 6.171495796544E+03 against expected result 6.171496E+03
*** PASSED ***
Testing computed result -2.304918486746E+02 against expected result -2.304918E+02
*** PASSED ***
Elapsed time: 4.064998 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-parallel.in

Splitting the input file into 4 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE0.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369591602E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524998001E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895113069E+01 kJ/mol
  Global net ELEC energy = -5.734895113069E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE0.out
Processor 0 results:
  2.383232191816E+02
  8.145369591602E+02
  1.485524998001E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.734895113069E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE1.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191816E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419898332E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328612E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707009E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557588E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, -2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949131E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462051928E+01 kJ/mol
  Global net ELEC energy = -5.734462051928E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE1.out
Processor 1 results:
  2.383232191816E+02
  8.145419898332E+02
  1.485529328612E+03
  2.977178707009E+02
  8.799304557588E+02
  1.542873949131E+03
  -5.734462051928E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE2.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145369593489E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485524997676E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (-2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734895146550E+01 kJ/mol
  Global net ELEC energy = -5.734895146550E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE2.out
Processor 2 results:
  2.383232191909E+02
  8.145369593489E+02
  1.485524997676E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.734895146550E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE3.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 1 molecules
Reading XML-format atom data from ion.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 61.280 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.383232191909E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.145419900310E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #3 (solvated): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.280 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.485529328301E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.781 x 0.781 x 0.781
  Grid lengths: 50.000 x 50.000 x 50.000
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977178707146E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.296 x 0.296 x 0.383
  Grid lengths: 18.944 x 18.944 x 24.495
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.799304557596E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (reference): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.207 MB total, 122.102 MB high water
  Using cubic spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 1
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.112 x 0.112 x 0.188
  Grid lengths: 7.178 x 7.178 x 12.000
  Grid center: (2.411, 2.411, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.542873949141E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (solvated) - 2 (reference) end
  Local net energy (PE 0) = -5.734462084052E+01 kJ/mol
  Global net ELEC energy = -5.734462084052E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  0.001 MB total, 122.102 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE3.out
Processor 3 results:
  2.383232191909E+02
  8.145419900310E+02
  1.485529328301E+03
  2.977178707146E+02
  8.799304557596E+02
  1.542873949141E+03
  -5.734462084052E+01

RESULT 953.292876745
RESULT 3258.1578983732998
RESULT 5942.108652589999
RESULT 1190.8714828309999
RESULT 3519.7218230368003
RESULT 6171.495796544
RESULT -229.38714395599
Testing computed result 9.532928767450E+02 against expected result 9.532929E+02
*** PASSED ***
Testing computed result 3.258157898373E+03 against expected result 3.258158E+03
*** PASSED ***
Testing computed result 5.942108652590E+03 against expected result 5.942109E+03
*** PASSED ***
Testing computed result 1.190871482831E+03 against expected result 1.190871E+03
*** PASSED ***
Testing computed result 3.519721823037E+03 against expected result 3.519722E+03
*** PASSED ***
Testing computed result 6.171495796544E+03 against expected result 6.171496E+03
*** PASSED ***
Testing computed result -2.293871439560E+02 against expected result -2.293871E+02
*** PASSED ***
Elapsed time: 4.031022 seconds
--------------------------------------------------------------------------------
Total elapsed time: 10.057208 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for actin-dimer-auto section
--------------------------------------------------------------------------------
Testing input file apbs-mol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-auto.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527617850342E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.919510754196E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.527671844880E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.915468859278E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.056317807611E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.836028296532E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.048683058625E+02 kJ/mol
  Global net ELEC energy = 1.048683058625E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-auto.out
RESULT 152761.7850342
RESULT 291951.0754196
RESULT 152767.184488
RESULT 291546.8859278
RESULT 305631.7807611
RESULT 583602.8296532
RESULT 104.8683058625
Testing computed result 1.527617850342E+05 against expected result 1.527618E+05
*** PASSED ***
Testing computed result 2.919510754196E+05 against expected result 2.919511E+05
*** PASSED ***
Testing computed result 1.527671844880E+05 against expected result 1.527672E+05
*** PASSED ***
Testing computed result 2.915468859278E+05 against expected result 2.915469E+05
*** PASSED ***
Testing computed result 3.056317807611E+05 against expected result 3.056318E+05
*** PASSED ***
Testing computed result 5.836028296532E+05 against expected result 5.836028E+05
*** PASSED ***
Testing computed result 1.048683058625E+02 against expected result 1.048683E+02
*** PASSED ***
Elapsed time: 50.350946 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-auto.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-auto.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-auto.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 1028.322 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.528632421825E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1028.322 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.920618662320E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2042.113 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.529297900572E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1030.291 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.916592202835E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2046.048 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.975 x 0.756 x 1.012
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.059244262535E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  1046.446 MB total, 2069.492 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 161 x 161 x 161
  Grid spacings: 0.700 x 0.569 x 0.725
  Grid lengths: 112.000 x 91.000 x 116.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.838306706232E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 2 (mol2) - 1 (mol1) end
  Local net energy (PE 0) = 1.095841077691E+02 kJ/mol
  Global net ELEC energy = 1.095841077691E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 2069.492 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-auto.out
RESULT 152863.2421825
RESULT 292061.866232
RESULT 152929.7900572
RESULT 291659.2202835
RESULT 305924.4262535
RESULT 583830.6706232
RESULT 109.5841077691
Testing computed result 1.528632421825E+05 against expected result 1.528632E+05
*** PASSED ***
Testing computed result 2.920618662320E+05 against expected result 2.920619E+05
*** PASSED ***
Testing computed result 1.529297900572E+05 against expected result 1.529298E+05
*** PASSED ***
Testing computed result 2.916592202835E+05 against expected result 2.916592E+05
*** PASSED ***
Testing computed result 3.059244262535E+05 against expected result 3.059244E+05
*** PASSED ***
Testing computed result 5.838306706232E+05 against expected result 5.838307E+05
*** PASSED ***
Testing computed result 1.095841077691E+02 against expected result 1.095841E+02
*** PASSED ***
Elapsed time: 41.503047 seconds
--------------------------------------------------------------------------------
Total elapsed time: 91.853993 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for actin-dimer-parallel section
--------------------------------------------------------------------------------
Testing input file apbs-mol-parallel.in

Splitting the input file into 8 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE0.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.335181353180E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.307364282738E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.892640552270E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.287357981689E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.237489755360E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.595556713401E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE0.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.344489735005E+00 kJ/mol
  Global net ELEC energy = 8.344489735005E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE0.out
Processor 0 results:
  1.335181353180E+03
  1.307364282738E+04
  2.892640552270E+03
  2.287357981689E+04
  4.237489755360E+03
  3.595556713401E+04
  8.344489735005E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.161150884899E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.271349239954E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.084559511557E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.159185455930E-02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.161009682231E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.271249973273E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE1.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -9.010749548674E-01 kJ/mol
  Global net ELEC energy = -9.010749548674E-01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE1.out
Processor 1 results:
  1.161150884899E+04
  9.271349239954E+04
  1.084559511557E-01
  9.159185455930E-02
  1.161009682231E+04
  9.271249973273E+04
  -9.010749548674E-01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.533327920982E+01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.349327483109E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.753646268927E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.716901575464E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.760706267384E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.753396861378E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE2.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.002011083293E+01 kJ/mol
  Global net ELEC energy = 3.002011083293E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE2.out
Processor 2 results:
  1.533327920982E+01
  3.349327483109E+02
  4.753646268927E+03
  3.716901575464E+04
  4.760706267384E+03
  3.753396861378E+04
  3.002011083293E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.803290534287E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.400275505449E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.150603559111E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.573366340513E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.804039178218E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.400354034488E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE3.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.710240552123E+00 kJ/mol
  Global net ELEC energy = 8.710240552123E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE3.out
Processor 3 results:
  1.803290534287E+04
  1.400275505449E+05
  8.150603559111E-01
  8.573366340513E-01
  1.804039178218E+04
  1.400354034488E+05
  8.710240552123E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.015087619451E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.216054441666E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.620207421716E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.273875050379E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.666622027749E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.306246439444E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE4.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 2.108446480104E+01 kJ/mol
  Global net ELEC energy = 2.108446480104E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE4.out
Processor 4 results:
  4.015087619451E+02
  3.216054441666E+03
  1.620207421716E+04
  1.273875050379E+05
  1.666622027749E+04
  1.306246439444E+05
  2.108446480104E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE5.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE5.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.100112513614E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.662571883858E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.370921758038E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.013366922344E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.115105077953E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.662768924081E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE5.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 2.371738924671E+00 kJ/mol
  Global net ELEC energy = 2.371738924671E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE5.out
Processor 5 results:
  2.100112513614E+03
  1.662571883858E+04
  4.370921758038E-01
  4.013366922344E-01
  2.115105077953E+03
  1.662768924081E+04
  2.371738924671E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE6.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE6.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -2.817378781616E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.959534462269E+00 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.176793266728E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.643533578081E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.176229449467E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.643148330287E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE6.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.892943480882E+00 kJ/mol
  Global net ELEC energy = -1.892943480882E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE6.out
Processor 6 results:
  2.817378781616E+00
  1.959534462269E+00
  1.176793266728E+04
  9.643533578081E+04
  1.176229449467E+04
  9.643148330287E+04
  -1.892943480882E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-parallel-PE7.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-parallel-PE7.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.428230292158E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.199832997920E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.881300088062E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.152799174875E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.847712854852E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 2.618156668929E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE7.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.043753521012E+01 kJ/mol
  Global net ELEC energy = 3.043753521012E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-parallel-PE7.out
Processor 7 results:
  2.428230292158E+03
  2.199832997920E+04
  3.881300088062E+02
  4.152799174875E+03
  2.847712854852E+03
  2.618156668929E+04
  3.043753521012E+01

RESULT 35927.59777074854
RESULT 287991.6813140391
RESULT 36005.78432292607
RESULT 288019.58583029587
RESULT 72040.017332199
RESULT 576102.8221066899
RESULT 98.17456162013961
Testing computed result 3.592759777075E+04 against expected result 3.592760E+04
*** PASSED ***
Testing computed result 2.879916813140E+05 against expected result 2.879917E+05
*** PASSED ***
Testing computed result 3.600578432293E+04 against expected result 3.600578E+04
*** PASSED ***
Testing computed result 2.880195858303E+05 against expected result 2.880196E+05
*** PASSED ***
Testing computed result 7.204001733220E+04 against expected result 7.204002E+04
*** PASSED ***
Testing computed result 5.761028221067E+05 against expected result 5.761028E+05
*** PASSED ***
Testing computed result 9.817456162014E+01 against expected result 9.817456E+01
*** PASSED ***
Elapsed time: 159.280156 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-parallel.in

Splitting the input file into 8 separate files using the inputgen utility

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE0.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE0.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.371266245949E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.306912276054E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.977036667733E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.288057348250E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.356039288708E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.595842845220E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE0.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 8.732209150865E+00 kJ/mol
  Global net ELEC energy = 8.732209150865E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE0.out
Processor 0 results:
  1.371266245949E+03
  1.306912276054E+04
  2.977036667733E+03
  2.288057348250E+04
  4.356039288708E+03
  3.595842845220E+04
  8.732209150865E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.183935033618E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.276168507128E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.420924995464E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -1.129046670919E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.183791435221E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.276041697078E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE1.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.155195837104E+00 kJ/mol
  Global net ELEC energy = -1.155195837104E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE1.out
Processor 1 results:
  1.183935033618E+04
  9.276168507128E+04
  1.420924995464E-01
  1.129046670919E-01
  1.183791435221E+04
  9.276041697078E+04
  -1.155195837104E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.992726432058E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.375960934473E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.863608503641E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.720602537782E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.896854387650E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 3.757590620855E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE2.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.228473728523E+01 kJ/mol
  Global net ELEC energy = 3.228473728523E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE2.out
Processor 2 results:
  9.992726432058E+00
  3.375960934473E+02
  4.863608503641E+03
  3.720602537782E+04
  4.896854387650E+03
  3.757590620855E+04
  3.228473728523E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.826846317904E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.401007397614E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -9.966525690477E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -8.961424692860E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.827933209233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, -6.674)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.401092487740E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE3.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 9.405155088028E+00 kJ/mol
  Global net ELEC energy = 9.405155088028E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE3.out
Processor 3 results:
  1.826846317904E+04
  1.401007397614E+05
  9.966525690477E-01
  8.961424692860E-01
  1.827933209233E+04
  1.401092487740E+05
  9.405155088028E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.021998204986E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.215581388579E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.644646339930E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.274227930024E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.689865332202E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.306747503910E+05 kJ/mol
  Calculating forces...
  Writing potential to pot-PE4.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.637600005488E+01 kJ/mol
  Global net ELEC energy = 3.637600005488E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE4.out
Processor 4 results:
  4.021998204986E+02
  3.215581388579E+03
  1.644646339930E+04
  1.274227930024E+05
  1.689865332202E+04
  1.306747503910E+05
  3.637600005488E+01

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE5.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE5.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.187673595319E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.663590032901E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.710032885061E-01 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.849499127484E-01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.189033693728E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, -20.834, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 1.663641996916E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE5.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 1.004590063261E+00 kJ/mol
  Global net ELEC energy = 1.004590063261E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE5.out
Processor 5 results:
  2.187673595319E+03
  1.663590032901E+04
  4.710032885061E-01
  4.849499127484E-01
  2.189033693728E+03
  1.663641996916E+04
  1.004590063261E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE6.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE6.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -4.897659240526E+00 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = -2.552765434658E+00 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.200266111088E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.646358551314E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.199560371894E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (-20.091, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 9.645933328248E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE6.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = -1.699465221478E+00 kJ/mol
  Global net ELEC energy = -1.699465221478E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE6.out
Processor 6 results:
  4.897659240526E+00
  2.552765434658E+00
  1.200266111088E+04
  9.646358551314E+04
  1.199560371894E+04
  9.645933328248E+04
  -1.699465221478E+00

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-parallel-PE7.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-parallel-PE7.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (1.535e+01, -3.100e-02, 2.993e+00)
  Net charge -1.20e+01 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5877 atoms
  Centered at (-1.404e+01, -3.356e+00, 3.049e+01)
  Net charge -1.20e+01 e
Reading PQR-format atom data from complex.pqr.
  11754 atoms
  Centered at (2.518e+00, -2.465e+00, 1.674e+01)
  Net charge -2.40e+01 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 274.673 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.521894873214E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (mol1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  274.673 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 1
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.200161660501E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 534.816 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.033680106430E+02 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (mol2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  276.642 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 2
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.154432431334E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 538.751 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 1.625 x 1.260 x 1.688
  Grid lengths: 156.000 x 121.000 x 162.000
  Grid center: (2.518, -2.465, 16.742)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.960165191413E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.608 A
  Current memory usage:  292.797 MB total, 562.195 MB high water
  Using linear spline charge discretization.
  Partition overlap fraction = 0.1
  Processor array = 2 x 2 x 2
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.696 x 0.565 x 0.720
  Grid lengths: 66.783 x 54.261 x 69.168
  Grid center: (25.127, 15.905, 40.159)
  Multigrid levels: 4
  Molecule ID: 3
  Nonlinear traditional PBE
  Boundary conditions from focusing
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Potential to be written to pot.dx
  Total electrostatic energy = 2.618664307349E+04 kJ/mol
  Calculating forces...
  Writing potential to pot-PE7.dx
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (mol1) - 2 (mol2) end
  Local net energy (PE 0) = 3.059403714563E+01 kJ/mol
  Global net ELEC energy = 3.059403714563E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 562.195 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-parallel-PE7.out
Processor 7 results:
  2.521894873214E+03
  2.200161660501E+04
  4.033680106430E+02
  4.154432431334E+03
  2.960165191413E+03
  2.618664307349E+04
  3.059403714563E+01

RESULT 36605.73843587318
RESULT 288124.794774701
RESULT 36694.74744055409
RESULT 288128.90380424313
RESULT 73413.59604699901
RESULT 576361.14712166
RESULT 115.54206772931201
Testing computed result 3.660573843587E+04 against expected result 3.660574E+04
*** PASSED ***
Testing computed result 2.881247947747E+05 against expected result 2.881248E+05
*** PASSED ***
Testing computed result 3.669474744055E+04 against expected result 3.669475E+04
*** PASSED ***
Testing computed result 2.881289038042E+05 against expected result 2.881289E+05
*** PASSED ***
Testing computed result 7.341359604700E+04 against expected result 7.341360E+04
*** PASSED ***
Testing computed result 5.763611471217E+05 against expected result 5.763611E+05
*** PASSED ***
Testing computed result 1.155420677293E+02 against expected result 1.155421E+02
*** PASSED ***
Elapsed time: 134.178748 seconds
--------------------------------------------------------------------------------
Total elapsed time: 293.458904 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for alkanes section
--------------------------------------------------------------------------------
Testing input file alkanes.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  alkanes.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file alkanes.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 11 molecules
Reading PDB-format atom data from 2-methylbutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from butane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (3.917e+00, 7.025e-01, -8.575e+00)
  Net charge 3.51e+00 e
Reading PDB-format atom data from cyclohexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (1.123e+00, 5.880e-01, 7.680e-01)
  Net charge 4.93e+00 e
Reading PDB-format atom data from cyclopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  13 atoms
  Centered at (1.320e+00, 5.255e-01, 1.289e+00)
  Net charge 3.88e+00 e
Reading PDB-format atom data from ethane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  8 atoms
  Centered at (2.210e-01, -2.100e-02, 7.650e-01)
  Net charge 1.87e+00 e
Reading PDB-format atom data from hexane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  20 atoms
  Centered at (4.951e+00, -9.500e-03, -8.406e+00)
  Net charge 5.16e+00 e
Reading PDB-format atom data from isobutane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.859e+01, 1.864e+01, 1.921e+01)
  Net charge 3.51e+00 e
Reading PDB-format atom data from methane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  5 atoms
  Centered at (1.803e+01, 1.779e+01, 1.782e+01)
  Net charge 1.05e+00 e
Reading PDB-format atom data from neopentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (1.867e+01, 1.894e+01, 1.920e+01)
  Net charge 4.33e+00 e
Reading PDB-format atom data from pentane.pdb.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  17 atoms
  Centered at (4.460e+00, 1.615e-01, -8.566e+00)
  Net charge 4.33e+00 e
Reading PDB-format atom data from propane.pdb.
  11 atoms
  Centered at (1.836e+01, 1.896e+01, 1.861e+01)
  Net charge 2.69e+00 e
Preparing to run 11 PBE calculations.
----------------------------------------
CALCULATION #1 (solvated-2-methylbutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.815624614267E+00
  SASA for atom 1: 0.000000000000E+00
  SASA for atom 2: 6.122920124655E-01
  SASA for atom 3: 3.957497153740E+00
  SASA for atom 4: 4.308445014544E+00
  SASA for atom 5: 1.843264951960E+01
  SASA for atom 6: 1.837011296483E+01
  SASA for atom 7: 1.666599184724E+01
  SASA for atom 8: 1.480031796315E+01
  SASA for atom 9: 1.603020354037E+01
  SASA for atom 10: 1.473778140838E+01
  SASA for atom 11: 1.611879699297E+01
  SASA for atom 12: 1.810954398660E+01
  SASA for atom 13: 1.420100931324E+01
  SASA for atom 14: 1.437298483886E+01
  SASA for atom 15: 1.814081226399E+01
  SASA for atom 16: 2.152820898091E+01

Total solvent accessible surface area: 214.202 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.243280922127E-02
  Surface tension*area energy for atom 1: 0.000000000000E+00
  Surface tension*area energy for atom 2: 5.204482105957E-03
  Surface tension*area energy for atom 3: 3.363872580679E-02
  Surface tension*area energy for atom 4: 3.662178262362E-02
  Surface tension*area energy for atom 5: 1.566775209166E-01
  Surface tension*area energy for atom 6: 1.561459602010E-01
  Surface tension*area energy for atom 7: 1.416609307015E-01
  Surface tension*area energy for atom 8: 1.258027026868E-01
  Surface tension*area energy for atom 9: 1.362567300932E-01
  Surface tension*area energy for atom 10: 1.252711419712E-01
  Surface tension*area energy for atom 11: 1.370097744402E-01
  Surface tension*area energy for atom 12: 1.539311238861E-01
  Surface tension*area energy for atom 13: 1.207085791625E-01
  Surface tension*area energy for atom 14: 1.221703711303E-01
  Surface tension*area energy for atom 15: 1.541969042439E-01
  Surface tension*area energy for atom 16: 1.829897763377E-01

Total surface tension energy: 1.82072 kJ/mol

Total solvent accessible volume: 253.665 A^3

Total pressure*volume energy: 60.7274 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.271287875274E+00
  WCA energy for atom 1: -5.600872869478E+00
  WCA energy for atom 2: -5.773775123943E+00
  WCA energy for atom 3: -6.072801488986E+00
  WCA energy for atom 4: -6.378470721845E+00
  WCA energy for atom 5: -1.573474558351E+00
  WCA energy for atom 6: -1.582338715648E+00
  WCA energy for atom 7: -1.504044838266E+00
  WCA energy for atom 8: -1.351002262819E+00
  WCA energy for atom 9: -1.437367175239E+00
  WCA energy for atom 10: -1.384626257493E+00
  WCA energy for atom 11: -1.468867560891E+00
  WCA energy for atom 12: -1.557005662832E+00
  WCA energy for atom 13: -1.473759654043E+00
  WCA energy for atom 14: -1.502261431335E+00
  WCA energy for atom 15: -1.550940901474E+00
  WCA energy for atom 16: -1.667828659696E+00

Total WCA energy: -48.1507 kJ/mol

Total non-polar energy = 1.439739455792E+01 kJ/mol
----------------------------------------
CALCULATION #2 (solvated-butane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 8.064333822716E-01
  SASA for atom 3: 4.375647796400E+00
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.660345529247E+01
  SASA for atom 8: 1.658782115377E+01
  SASA for atom 9: 1.658260977421E+01
  SASA for atom 10: 1.658260977421E+01
  SASA for atom 11: 2.145003828744E+01
  SASA for atom 12: 1.852124297220E+01
  SASA for atom 13: 1.856293400871E+01

Total solvent accessible surface area: 193.855 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 6.854683749309E-03
  Surface tension*area energy for atom 3: 3.719300626940E-02
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.411293699860E-01
  Surface tension*area energy for atom 8: 1.409964798071E-01
  Surface tension*area energy for atom 9: 1.409521830808E-01
  Surface tension*area energy for atom 10: 1.409521830808E-01
  Surface tension*area energy for atom 11: 1.823253254433E-01
  Surface tension*area energy for atom 12: 1.574305652637E-01
  Surface tension*area energy for atom 13: 1.577849390741E-01

Total surface tension energy: 1.64777 kJ/mol

Total solvent accessible volume: 217.863 A^3

Total pressure*volume energy: 52.1564 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.728858147814E+00
  WCA energy for atom 1: -6.204037472587E+00
  WCA energy for atom 2: -6.202937735018E+00
  WCA energy for atom 3: -6.728762249931E+00
  WCA energy for atom 4: -1.623549989062E+00
  WCA energy for atom 5: -1.709092300778E+00
  WCA energy for atom 6: -1.625196457114E+00
  WCA energy for atom 7: -1.484289341167E+00
  WCA energy for atom 8: -1.485410538626E+00
  WCA energy for atom 9: -1.485593139015E+00
  WCA energy for atom 10: -1.484878734279E+00
  WCA energy for atom 11: -1.708585062695E+00
  WCA energy for atom 12: -1.625094916482E+00
  WCA energy for atom 13: -1.624416805392E+00

Total WCA energy: -41.7207 kJ/mol

Total non-polar energy = 1.208346456826E+01 kJ/mol
----------------------------------------
CALCULATION #3 (solvated-cyclohexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 7.840324549863E-01
  SASA for atom 1: 8.064333822716E-01
  SASA for atom 2: 8.288343095569E-01
  SASA for atom 3: 7.840324549863E-01
  SASA for atom 4: 7.989664065098E-01
  SASA for atom 5: 8.363012853187E-01
  SASA for atom 6: 2.001169752764E+01
  SASA for atom 7: 1.616048802948E+01
  SASA for atom 8: 2.001169752764E+01
  SASA for atom 9: 1.619175630687E+01
  SASA for atom 10: 1.616048802948E+01
  SASA for atom 11: 1.993352683418E+01
  SASA for atom 12: 2.001169752764E+01
  SASA for atom 13: 1.618133354774E+01
  SASA for atom 14: 1.617091078861E+01
  SASA for atom 15: 2.001690890721E+01
  SASA for atom 16: 1.993873821374E+01
  SASA for atom 17: 1.617091078861E+01

Total solvent accessible surface area: 221.799 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 6.664275867383E-03
  Surface tension*area energy for atom 1: 6.854683749309E-03
  Surface tension*area energy for atom 2: 7.045091631234E-03
  Surface tension*area energy for atom 3: 6.664275867383E-03
  Surface tension*area energy for atom 4: 6.791214455333E-03
  Surface tension*area energy for atom 5: 7.108560925209E-03
  Surface tension*area energy for atom 6: 1.700994289850E-01
  Surface tension*area energy for atom 7: 1.373641482506E-01
  Surface tension*area energy for atom 8: 1.700994289850E-01
  Surface tension*area energy for atom 9: 1.376299286084E-01
  Surface tension*area energy for atom 10: 1.373641482506E-01
  Surface tension*area energy for atom 11: 1.694349780905E-01
  Surface tension*area energy for atom 12: 1.700994289850E-01
  Surface tension*area energy for atom 13: 1.375413351558E-01
  Surface tension*area energy for atom 14: 1.374527417032E-01
  Surface tension*area energy for atom 15: 1.701437257113E-01
  Surface tension*area energy for atom 16: 1.694792748168E-01
  Surface tension*area energy for atom 17: 1.374527417032E-01

Total surface tension energy: 1.88529 kJ/mol

Total solvent accessible volume: 267.435 A^3

Total pressure*volume energy: 64.0239 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -5.793234697241E+00
  WCA energy for atom 1: -5.784370526583E+00
  WCA energy for atom 2: -5.791799130412E+00
  WCA energy for atom 3: -5.788504399087E+00
  WCA energy for atom 4: -5.797319672490E+00
  WCA energy for atom 5: -5.787358035342E+00
  WCA energy for atom 6: -1.523887929614E+00
  WCA energy for atom 7: -1.413678912317E+00
  WCA energy for atom 8: -1.521751604392E+00
  WCA energy for atom 9: -1.414741802525E+00
  WCA energy for atom 10: -1.413367854344E+00
  WCA energy for atom 11: -1.523407238081E+00
  WCA energy for atom 12: -1.523000623583E+00
  WCA energy for atom 13: -1.413922068538E+00
  WCA energy for atom 14: -1.416316744211E+00
  WCA energy for atom 15: -1.524577474659E+00
  WCA energy for atom 16: -1.523300410052E+00
  WCA energy for atom 17: -1.414522566061E+00

Total WCA energy: -52.3691 kJ/mol

Total non-polar energy = 1.354016672221E+01 kJ/mol
----------------------------------------
CALCULATION #4 (solvated-cyclopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 9.490526193215E+00
  SASA for atom 1: 9.512927120500E+00
  SASA for atom 2: 2.299828534626E+00
  SASA for atom 3: 1.919012770776E+00
  SASA for atom 4: 2.307295510388E+00
  SASA for atom 5: 2.325838699632E+01
  SASA for atom 6: 2.325838699632E+01
  SASA for atom 7: 2.045987617019E+01
  SASA for atom 8: 2.067875411190E+01
  SASA for atom 9: 2.028790064456E+01
  SASA for atom 10: 1.897463299431E+01
  SASA for atom 11: 2.048593306801E+01
  SASA for atom 12: 2.070481100972E+01

Total solvent accessible surface area: 193.638 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.066947264233E-02
  Surface tension*area energy for atom 1: 8.085988052425E-02
  Surface tension*area energy for atom 2: 1.954854254432E-02
  Surface tension*area energy for atom 3: 1.631160855160E-02
  Surface tension*area energy for atom 4: 1.961201183830E-02
  Surface tension*area energy for atom 5: 1.976962894687E-01
  Surface tension*area energy for atom 6: 1.976962894687E-01
  Surface tension*area energy for atom 7: 1.739089474466E-01
  Surface tension*area energy for atom 8: 1.757694099511E-01
  Surface tension*area energy for atom 9: 1.724471554788E-01
  Surface tension*area energy for atom 10: 1.612843804516E-01
  Surface tension*area energy for atom 11: 1.741304310781E-01
  Surface tension*area energy for atom 12: 1.759908935826E-01

Total surface tension energy: 1.64593 kJ/mol

Total solvent accessible volume: 217.998 A^3

Total pressure*volume energy: 52.1887 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.343496616804E+00
  WCA energy for atom 1: -6.327869601807E+00
  WCA energy for atom 2: -6.334858040579E+00
  WCA energy for atom 3: -6.296075406417E+00
  WCA energy for atom 4: -6.345600816761E+00
  WCA energy for atom 5: -1.663697465126E+00
  WCA energy for atom 6: -1.662444032853E+00
  WCA energy for atom 7: -1.572325104493E+00
  WCA energy for atom 8: -1.604626551065E+00
  WCA energy for atom 9: -1.586431484963E+00
  WCA energy for atom 10: -1.554291291374E+00
  WCA energy for atom 11: -1.574315220751E+00
  WCA energy for atom 12: -1.604941679892E+00

Total WCA energy: -44.471 kJ/mol

Total non-polar energy = 9.363673200142E+00 kJ/mol
----------------------------------------
CALCULATION #5 (solvated-ethane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 5.995981536705E+00
  SASA for atom 1: 5.966113633657E+00
  SASA for atom 2: 2.121552620704E+01
  SASA for atom 3: 2.124158310486E+01
  SASA for atom 4: 2.125200586399E+01
  SASA for atom 5: 2.123116034573E+01
  SASA for atom 6: 2.125200586399E+01
  SASA for atom 7: 2.127285138225E+01

Total solvent accessible surface area: 139.427 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 5.096584306199E-02
  Surface tension*area energy for atom 1: 5.071196588609E-02
  Surface tension*area energy for atom 2: 1.803319727598E-01
  Surface tension*area energy for atom 3: 1.805534563913E-01
  Surface tension*area energy for atom 4: 1.806420498439E-01
  Surface tension*area energy for atom 5: 1.804648629387E-01
  Surface tension*area energy for atom 6: 1.806420498439E-01
  Surface tension*area energy for atom 7: 1.808192367491E-01

Total surface tension energy: 1.18513 kJ/mol

Total solvent accessible volume: 140.346 A^3

Total pressure*volume energy: 33.5988 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -7.360066353115E+00
  WCA energy for atom 1: -7.355483516201E+00
  WCA energy for atom 2: -1.776106201066E+00
  WCA energy for atom 3: -1.773973940651E+00
  WCA energy for atom 4: -1.775401936843E+00
  WCA energy for atom 5: -1.773464835521E+00
  WCA energy for atom 6: -1.774382856097E+00
  WCA energy for atom 7: -1.772366599434E+00

Total WCA energy: -25.3612 kJ/mol

Total non-polar energy = 9.422717598546E+00 kJ/mol
----------------------------------------
CALCULATION #6 (solvated-hexane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 2.986790304710E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.381536722546E+01
  SASA for atom 12: 1.384142412329E+01
  SASA for atom 13: 7.765654792245E-01
  SASA for atom 14: 1.684839013200E+01
  SASA for atom 15: 1.682233323417E+01
  SASA for atom 16: 4.166572475070E+00
  SASA for atom 17: 2.179398933870E+01
  SASA for atom 18: 1.877660057086E+01
  SASA for atom 19: 1.876096643216E+01

Total solvent accessible surface area: 250.291 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 2.538771759003E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.174306214164E-01
  Surface tension*area energy for atom 12: 1.176521050479E-01
  Surface tension*area energy for atom 13: 6.600806573408E-03
  Surface tension*area energy for atom 14: 1.432113161220E-01
  Surface tension*area energy for atom 15: 1.429898324905E-01
  Surface tension*area energy for atom 16: 3.541586603809E-02
  Surface tension*area energy for atom 17: 1.852489093789E-01
  Surface tension*area energy for atom 18: 1.596011048523E-01
  Surface tension*area energy for atom 19: 1.594682146734E-01

Total surface tension energy: 2.12748 kJ/mol

Total solvent accessible volume: 298.053 A^3

Total pressure*volume energy: 71.3539 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.635406071935E+00
  WCA energy for atom 1: -5.957247427848E+00
  WCA energy for atom 2: -5.524801144538E+00
  WCA energy for atom 3: -5.522294168859E+00
  WCA energy for atom 4: -1.605314409440E+00
  WCA energy for atom 5: -1.701051761776E+00
  WCA energy for atom 6: -1.606669162773E+00
  WCA energy for atom 7: -1.442505934938E+00
  WCA energy for atom 8: -1.443059002759E+00
  WCA energy for atom 9: -1.328947132810E+00
  WCA energy for atom 10: -1.328906972440E+00
  WCA energy for atom 11: -1.331566344214E+00
  WCA energy for atom 12: -1.328041776815E+00
  WCA energy for atom 13: -5.937562025661E+00
  WCA energy for atom 14: -1.442277774427E+00
  WCA energy for atom 15: -1.442777091510E+00
  WCA energy for atom 16: -6.602262542378E+00
  WCA energy for atom 17: -1.698172146664E+00
  WCA energy for atom 18: -1.600970858835E+00
  WCA energy for atom 19: -1.600841970217E+00

Total WCA energy: -57.0807 kJ/mol

Total non-polar energy = 1.640068943201E+01 kJ/mol
----------------------------------------
CALCULATION #7 (solvated-isobutane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.464676753463E+00
  SASA for atom 1: 1.984493338158E+01
  SASA for atom 2: 1.778643845361E+01
  SASA for atom 3: 1.671289426332E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 3.531879535319E+00
  SASA for atom 6: 1.673895116114E+01
  SASA for atom 7: 1.793756846098E+01
  SASA for atom 8: 1.973549441072E+01
  SASA for atom 9: 1.710895911022E+01
  SASA for atom 10: 4.599657069253E+00
  SASA for atom 11: 1.937069784121E+01
  SASA for atom 12: 1.654613011726E+01
  SASA for atom 13: 1.936548646165E+01

Total solvent accessible surface area: 192.744 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.944975240444E-02
  Surface tension*area energy for atom 1: 1.686819337434E-01
  Surface tension*area energy for atom 2: 1.511847268556E-01
  Surface tension*area energy for atom 3: 1.420596012382E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 3.002097605021E-02
  Surface tension*area energy for atom 6: 1.422810848697E-01
  Surface tension*area energy for atom 7: 1.524693319183E-01
  Surface tension*area energy for atom 8: 1.677517024912E-01
  Surface tension*area energy for atom 9: 1.454261524369E-01
  Surface tension*area energy for atom 10: 3.909708508865E-02
  Surface tension*area energy for atom 11: 1.646509316503E-01
  Surface tension*area energy for atom 12: 1.406421059967E-01
  Surface tension*area energy for atom 13: 1.646066349240E-01

Total surface tension energy: 1.63832 kJ/mol

Total solvent accessible volume: 218.943 A^3

Total pressure*volume energy: 52.415 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.381016335247E+00
  WCA energy for atom 1: -1.612317964554E+00
  WCA energy for atom 2: -1.588013719598E+00
  WCA energy for atom 3: -1.532162371190E+00
  WCA energy for atom 4: -5.987950445279E+00
  WCA energy for atom 5: -6.393089030861E+00
  WCA energy for atom 6: -1.533454887042E+00
  WCA energy for atom 7: -1.587650918485E+00
  WCA energy for atom 8: -1.614083521570E+00
  WCA energy for atom 9: -1.442402031577E+00
  WCA energy for atom 10: -6.408813541353E+00
  WCA energy for atom 11: -1.605830214390E+00
  WCA energy for atom 12: -1.529385873788E+00
  WCA energy for atom 13: -1.605662490385E+00

Total WCA energy: -40.8218 kJ/mol

Total non-polar energy = 1.323144287435E+01 kJ/mol
----------------------------------------
CALCULATION #8 (solvated-methane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.231304303117E+01
  SASA for atom 1: 2.323233009850E+01
  SASA for atom 2: 2.345641941977E+01
  SASA for atom 3: 2.377431357320E+01
  SASA for atom 4: 2.264344420771E+01

Total solvent accessible surface area: 105.42 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 1.046608657649E-01
  Surface tension*area energy for atom 1: 1.974748058372E-01
  Surface tension*area energy for atom 2: 1.993795650680E-01
  Surface tension*area energy for atom 3: 2.020816653722E-01
  Surface tension*area energy for atom 4: 1.924692757655E-01

Total surface tension energy: 0.896066 kJ/mol

Total solvent accessible volume: 95.985 A^3

Total pressure*volume energy: 22.9788 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -8.133807570805E+00
  WCA energy for atom 1: -1.962181541765E+00
  WCA energy for atom 2: -1.964078319162E+00
  WCA energy for atom 3: -1.963015006647E+00
  WCA energy for atom 4: -1.957425549100E+00

Total WCA energy: -15.9805 kJ/mol

Total non-polar energy = 7.894367190329E+00 kJ/mol
----------------------------------------
CALCULATION #9 (solvated-neopentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 2.441701074100E+00
  SASA for atom 1: 1.663993494942E+01
  SASA for atom 2: 1.715586152630E+01
  SASA for atom 3: 1.645753666466E+01
  SASA for atom 4: 0.000000000000E+00
  SASA for atom 5: 2.389432243768E+00
  SASA for atom 6: 1.638457735076E+01
  SASA for atom 7: 1.667641460637E+01
  SASA for atom 8: 1.721839808108E+01
  SASA for atom 9: 2.419300146815E+00
  SASA for atom 10: 1.640021148945E+01
  SASA for atom 11: 1.666599184724E+01
  SASA for atom 12: 1.719234118325E+01
  SASA for atom 13: 2.449168049862E+00
  SASA for atom 14: 1.723403221977E+01
  SASA for atom 15: 1.639500010989E+01
  SASA for atom 16: 1.663472356985E+01

Total solvent accessible surface area: 210.755 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.075445912985E-02
  Surface tension*area energy for atom 1: 1.414394470700E-01
  Surface tension*area energy for atom 2: 1.458248229736E-01
  Surface tension*area energy for atom 3: 1.398890616496E-01
  Surface tension*area energy for atom 4: 0.000000000000E+00
  Surface tension*area energy for atom 5: 2.031017407203E-02
  Surface tension*area energy for atom 6: 1.392689074814E-01
  Surface tension*area energy for atom 7: 1.417495241541E-01
  Surface tension*area energy for atom 8: 1.463563836891E-01
  Surface tension*area energy for atom 9: 2.056405124793E-02
  Surface tension*area energy for atom 10: 1.394017976603E-01
  Surface tension*area energy for atom 11: 1.416609307015E-01
  Surface tension*area energy for atom 12: 1.461349000577E-01
  Surface tension*area energy for atom 13: 2.081792842383E-02
  Surface tension*area energy for atom 14: 1.464892738680E-01
  Surface tension*area energy for atom 15: 1.393575009340E-01
  Surface tension*area energy for atom 16: 1.413951503437E-01

Total surface tension energy: 1.79141 kJ/mol

Total solvent accessible volume: 251.127 A^3

Total pressure*volume energy: 60.1198 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.011082520236E+00
  WCA energy for atom 1: -1.497367782613E+00
  WCA energy for atom 2: -1.498546483218E+00
  WCA energy for atom 3: -1.492562171495E+00
  WCA energy for atom 4: -5.447325863939E+00
  WCA energy for atom 5: -6.004516149175E+00
  WCA energy for atom 6: -1.492776531092E+00
  WCA energy for atom 7: -1.496078170066E+00
  WCA energy for atom 8: -1.501529655270E+00
  WCA energy for atom 9: -5.996267554365E+00
  WCA energy for atom 10: -1.492194267752E+00
  WCA energy for atom 11: -1.496027211216E+00
  WCA energy for atom 12: -1.500561393960E+00
  WCA energy for atom 13: -6.000218612907E+00
  WCA energy for atom 14: -1.500859921426E+00
  WCA energy for atom 15: -1.492908499790E+00
  WCA energy for atom 16: -1.494057174414E+00

Total WCA energy: -47.4149 kJ/mol

Total non-polar energy = 1.449633815052E+01 kJ/mol
----------------------------------------
CALCULATION #10 (solvated-pentane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 4.405515699447E+00
  SASA for atom 1: 8.213673337951E-01
  SASA for atom 2: 3.285469335181E-01
  SASA for atom 3: 7.466975761774E-01
  SASA for atom 4: 1.855251124959E+01
  SASA for atom 5: 2.147609518526E+01
  SASA for atom 6: 1.852645435176E+01
  SASA for atom 7: 1.655655287639E+01
  SASA for atom 8: 1.655134149682E+01
  SASA for atom 9: 1.360170066332E+01
  SASA for atom 10: 1.357043238593E+01
  SASA for atom 11: 1.685881289113E+01
  SASA for atom 12: 1.687444702982E+01
  SASA for atom 13: 4.196440378117E+00
  SASA for atom 14: 1.881308022781E+01
  SASA for atom 15: 1.882350298694E+01
  SASA for atom 16: 2.182004623652E+01

Total solvent accessible surface area: 222.524 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 3.744688344530E-02
  Surface tension*area energy for atom 1: 6.981622337259E-03
  Surface tension*area energy for atom 2: 2.792648934903E-03
  Surface tension*area energy for atom 3: 6.346929397508E-03
  Surface tension*area energy for atom 4: 1.576963456215E-01
  Surface tension*area energy for atom 5: 1.825468090747E-01
  Surface tension*area energy for atom 6: 1.574748619900E-01
  Surface tension*area energy for atom 7: 1.407306994493E-01
  Surface tension*area energy for atom 8: 1.406864027230E-01
  Surface tension*area energy for atom 9: 1.156144556382E-01
  Surface tension*area energy for atom 10: 1.153486752804E-01
  Surface tension*area energy for atom 11: 1.432999095746E-01
  Surface tension*area energy for atom 12: 1.434327997535E-01
  Surface tension*area energy for atom 13: 3.566974321399E-02
  Surface tension*area energy for atom 14: 1.599111819364E-01
  Surface tension*area energy for atom 15: 1.599997753890E-01
  Surface tension*area energy for atom 16: 1.854703930104E-01

Total surface tension energy: 1.89145 kJ/mol

Total solvent accessible volume: 258.93 A^3

Total pressure*volume energy: 61.9878 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.655804319869E+00
  WCA energy for atom 1: -6.027315962813E+00
  WCA energy for atom 2: -5.696430965386E+00
  WCA energy for atom 3: -6.016749084714E+00
  WCA energy for atom 4: -1.608595384643E+00
  WCA energy for atom 5: -1.703300955380E+00
  WCA energy for atom 6: -1.609931495887E+00
  WCA energy for atom 7: -1.457107525189E+00
  WCA energy for atom 8: -1.457741620594E+00
  WCA energy for atom 9: -1.354235498709E+00
  WCA energy for atom 10: -1.354106470090E+00
  WCA energy for atom 11: -1.456736412636E+00
  WCA energy for atom 12: -1.455995435596E+00
  WCA energy for atom 13: -6.633650611186E+00
  WCA energy for atom 14: -1.605996088477E+00
  WCA energy for atom 15: -1.606549890103E+00
  WCA energy for atom 16: -1.700042300035E+00

Total WCA energy: -49.4003 kJ/mol

Total non-polar energy = 1.447900211546E+01 kJ/mol
----------------------------------------
CALCULATION #11 (solvated-propane): APOLAR

Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 3.173464698754E+00
  SASA for atom 1: 1.931858404557E+01
  SASA for atom 2: 2.014198201675E+01
  SASA for atom 3: 2.149694070352E+01
  SASA for atom 4: 1.904078819252E+00
  SASA for atom 5: 2.067354273233E+01
  SASA for atom 6: 1.937590922077E+01
  SASA for atom 7: 3.098794941136E+00
  SASA for atom 8: 1.942802301642E+01
  SASA for atom 9: 1.973028303116E+01
  SASA for atom 10: 2.204934693736E+01

Total solvent accessible surface area: 170.391 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 2.697444993941E-02
  Surface tension*area energy for atom 1: 1.642079643873E-01
  Surface tension*area energy for atom 2: 1.712068471424E-01
  Surface tension*area energy for atom 3: 1.827239959799E-01
  Surface tension*area energy for atom 4: 1.618466996365E-02
  Surface tension*area energy for atom 5: 1.757251132248E-01
  Surface tension*area energy for atom 6: 1.646952283766E-01
  Surface tension*area energy for atom 7: 2.633975699966E-02
  Surface tension*area energy for atom 8: 1.651381956396E-01
  Surface tension*area energy for atom 9: 1.677074057649E-01
  Surface tension*area energy for atom 10: 1.874194489675E-01

Total surface tension energy: 1.44832 kJ/mol

Total solvent accessible volume: 183.573 A^3

Total pressure*volume energy: 43.9474 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.818670105515E+00
  WCA energy for atom 1: -1.641297645338E+00
  WCA energy for atom 2: -1.649584120441E+00
  WCA energy for atom 3: -1.711408141255E+00
  WCA energy for atom 4: -6.624720142882E+00
  WCA energy for atom 5: -1.610117050515E+00
  WCA energy for atom 6: -1.596858009746E+00
  WCA energy for atom 7: -6.816460624835E+00
  WCA energy for atom 8: -1.642782751806E+00
  WCA energy for atom 9: -1.645779566650E+00
  WCA energy for atom 10: -1.714436154542E+00

Total WCA energy: -33.4721 kJ/mol

Total non-polar energy = 1.192358496286E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print APOL energy 1 (solvated-2-methylbutane) end
  Global net APOL energy = 1.439739455792E+01 kJ/mol

print APOL energy 2 (solvated-butane) end
  Global net APOL energy = 1.208346456826E+01 kJ/mol

print APOL energy 3 (solvated-cyclohexane) end
  Global net APOL energy = 1.354016672221E+01 kJ/mol

print APOL energy 4 (solvated-cyclopentane) end
  Global net APOL energy = 9.363673200142E+00 kJ/mol

print APOL energy 5 (solvated-ethane) end
  Global net APOL energy = 9.422717598546E+00 kJ/mol

print APOL energy 6 (solvated-hexane) end
  Global net APOL energy = 1.640068943201E+01 kJ/mol

print APOL energy 7 (solvated-isobutane) end
  Global net APOL energy = 1.323144287435E+01 kJ/mol

print APOL energy 8 (solvated-methane) end
  Global net APOL energy = 7.894367190329E+00 kJ/mol

print APOL energy 9 (solvated-neopentane) end
  Global net APOL energy = 1.449633815052E+01 kJ/mol

print APOL energy 10 (solvated-pentane) end
  Global net APOL energy = 1.447900211546E+01 kJ/mol

print APOL energy 11 (solvated-propane) end
  Global net APOL energy = 1.192358496286E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 11 molecules
Final memory usage:  0.001 MB total, 2.267 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file alkanes.out
RESULT 14.39739455792
RESULT 12.08346456826
RESULT 13.54016672221
RESULT 9.363673200142
RESULT 9.422717598546
RESULT 16.40068943201
RESULT 13.23144287435
RESULT 7.894367190329
RESULT 14.49633815052
RESULT 14.47900211546
RESULT 11.92358496286
Testing computed result 1.439739455792E+01 against expected result 1.439739E+01
*** PASSED ***
Testing computed result 1.208346456826E+01 against expected result 1.208346E+01
*** PASSED ***
Testing computed result 1.354016672221E+01 against expected result 1.354017E+01
*** PASSED ***
Testing computed result 9.363673200142E+00 against expected result 9.363673E+00
*** PASSED ***
Testing computed result 9.422717598546E+00 against expected result 9.422718E+00
*** PASSED ***
Testing computed result 1.640068943201E+01 against expected result 1.640069E+01
*** PASSED ***
Testing computed result 1.323144287435E+01 against expected result 1.323144E+01
*** PASSED ***
Testing computed result 7.894367190329E+00 against expected result 7.894367E+00
*** PASSED ***
Testing computed result 1.449633815052E+01 against expected result 1.449634E+01
*** PASSED ***
Testing computed result 1.447900211546E+01 against expected result 1.447900E+01
*** PASSED ***
Testing computed result 1.192358496286E+01 against expected result 1.192358E+01
*** PASSED ***
Elapsed time: 8.703861 seconds
--------------------------------------------------------------------------------
Total elapsed time: 8.703861 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for FKBP section
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  1d7h-dmso-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file 1d7h-dmso-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.060899690259E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.276523673491E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.961107503213E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.121048606059E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.058410584089E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.205385249581E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.335429017008E+03 kJ/mol
  Global net ELEC energy = -3.335429017008E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.180527370616E+01 kJ/mol
  Global net ELEC energy = -2.180527370616E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.328631844166E+03 kJ/mol
  Global net ELEC energy = -3.328631844166E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.500810086371E+01 kJ/mol
  Global net ELEC energy = 1.500810086371E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7h-dmso-mol.out
RESULT 10608.99690259
RESULT 42765.23673491
RESULT 13992.34956777
RESULT 46100.66575192
RESULT 39.61107503213
RESULT 712.1048606059
RESULT 67.51571424823
RESULT 733.9101343121
RESULT 10584.10584089
RESULT 42053.85249581
RESULT 13959.61902233
RESULT 45382.48433997
RESULT -3335.429017008
RESULT -21.80527370616
RESULT -3328.631844166
RESULT 15.00810086371
Testing computed result 1.060899690259E+04 against expected result 1.060900E+04
*** PASSED ***
Testing computed result 4.276523673491E+04 against expected result 4.276524E+04
*** PASSED ***
Testing computed result 1.399234956777E+04 against expected result 1.399235E+04
*** PASSED ***
Testing computed result 4.610066575192E+04 against expected result 4.610067E+04
*** PASSED ***
Testing computed result 3.961107503213E+01 against expected result 3.961108E+01
*** PASSED ***
Testing computed result 7.121048606059E+02 against expected result 7.121049E+02
*** PASSED ***
Testing computed result 6.751571424823E+01 against expected result 6.751571E+01
*** PASSED ***
Testing computed result 7.339101343121E+02 against expected result 7.339101E+02
*** PASSED ***
Testing computed result 1.058410584089E+04 against expected result 1.058411E+04
*** PASSED ***
Testing computed result 4.205385249581E+04 against expected result 4.205385E+04
*** PASSED ***
Testing computed result 1.395961902233E+04 against expected result 1.395962E+04
*** PASSED ***
Testing computed result 4.538248433997E+04 against expected result 4.538248E+04
*** PASSED ***
Testing computed result 1.500810086371E+01 against expected result 1.500810E+01
*** PASSED ***
Elapsed time: 8.505258 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7h-dmso-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  1d7h-dmso-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file 1d7h-dmso-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7h-dmso-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1673 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dmso-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  10 atoms
  Centered at (1.775e+01, 1.777e+01, 2.049e+01)
  Net charge 2.78e-17 e
Reading PQR-format atom data from 1d7h-min.pqr.
  1663 atoms
  Centered at (2.587e+01, 1.835e+01, 1.911e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 122.059 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.074948704824E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.289487256481E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.399234956777E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.059 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.610066575192E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dmso-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.719709905887E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dmso-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.125747080979E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dmso-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.751571424823E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dmso-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.428 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.339101343121E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7h-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.071654753674E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7h-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.218178203716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7h-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.875, 18.349, 19.112)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.395961902233E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7h-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.736 MB total, 221.696 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.751, 17.770, 20.492)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.538248433997E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.205793187109E+03 kJ/mol
  Global net ELEC energy = -3.205793187109E+03 kJ/mol

print energy 6 (dmso-solv-fine) - 8 (dmso-ref-fine) end
  Local net energy (PE 0) = -2.133542621421E+01 kJ/mol
  Global net ELEC energy = -2.133542621421E+01 kJ/mol

print energy 10 (1d7h-solv-fine) - 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = -3.200702302816E+03 kJ/mol
  Global net ELEC energy = -3.200702302816E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dmso-solv-fine) + 8 (dmso-ref-fine) - 10 (1d7h-solv-fine) + 12 (1d7h-ref-fine) end
  Local net energy (PE 0) = 1.624454192073E+01 kJ/mol
  Global net ELEC energy = 1.624454192073E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 221.696 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7h-dmso-smol.out
RESULT 10749.48704824
RESULT 42894.87256481
RESULT 13992.34956777
RESULT 46100.66575192
RESULT 37.19709905887
RESULT 712.5747080979
RESULT 67.51571424823
RESULT 733.9101343121
RESULT 10716.54753674
RESULT 42181.78203716
RESULT 13959.61902233
RESULT 45382.48433997
RESULT -3205.793187109
RESULT -21.33542621421
RESULT -3200.702302816
RESULT 16.24454192073
Testing computed result 1.074948704824E+04 against expected result 1.074949E+04
*** PASSED ***
Testing computed result 4.289487256481E+04 against expected result 4.289487E+04
*** PASSED ***
Testing computed result 1.399234956777E+04 against expected result 1.399235E+04
*** PASSED ***
Testing computed result 4.610066575192E+04 against expected result 4.610067E+04
*** PASSED ***
Testing computed result 3.719709905887E+01 against expected result 3.719710E+01
*** PASSED ***
Testing computed result 7.125747080979E+02 against expected result 7.125747E+02
*** PASSED ***
Testing computed result 6.751571424823E+01 against expected result 6.751571E+01
*** PASSED ***
Testing computed result 7.339101343121E+02 against expected result 7.339101E+02
*** PASSED ***
Testing computed result 1.071654753674E+04 against expected result 1.071655E+04
*** PASSED ***
Testing computed result 4.218178203716E+04 against expected result 4.218178E+04
*** PASSED ***
Testing computed result 1.395961902233E+04 against expected result 1.395962E+04
*** PASSED ***
Testing computed result 4.538248433997E+04 against expected result 4.538248E+04
*** PASSED ***
Testing computed result 1.624454192073E+01 against expected result 1.624454E+01
*** PASSED ***
Elapsed time: 7.182784 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  1d7i-dss-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file 1d7i-dss-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.160578033846E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.955701871716E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.431133325426E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677348113184E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.040108332204E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.787747796627E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -3.460997931137E+03 kJ/mol
  Global net ELEC energy = -3.460997931137E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.052167100108E+01 kJ/mol
  Global net ELEC energy = -2.052167100108E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -3.454901259473E+03 kJ/mol
  Global net ELEC energy = -3.454901259473E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.442499933668E+01 kJ/mol
  Global net ELEC energy = 1.442499933668E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7i-dss-mol.out
RESULT 9160.578033846
RESULT 39557.01871716
RESULT 12649.65939588
RESULT 43018.01664829
RESULT 94.31133325426
RESULT 1677.348113184
RESULT 117.1079106781
RESULT 1697.869784185
RESULT 9040.108332204
RESULT 37877.47796627
RESULT 12524.95566243
RESULT 41332.37922574
RESULT -3460.997931137
RESULT -20.52167100108
RESULT -3454.901259473
RESULT 14.42499933668
Testing computed result 9.160578033846E+03 against expected result 9.160578E+03
*** PASSED ***
Testing computed result 3.955701871716E+04 against expected result 3.955702E+04
*** PASSED ***
Testing computed result 1.264965939588E+04 against expected result 1.264966E+04
*** PASSED ***
Testing computed result 4.301801664829E+04 against expected result 4.301802E+04
*** PASSED ***
Testing computed result 9.431133325426E+01 against expected result 9.431133E+01
*** PASSED ***
Testing computed result 1.677348113184E+03 against expected result 1.677348E+03
*** PASSED ***
Testing computed result 1.171079106781E+02 against expected result 1.171079E+02
*** PASSED ***
Testing computed result 1.697869784185E+03 against expected result 1.697870E+03
*** PASSED ***
Testing computed result 9.040108332204E+03 against expected result 9.040108E+03
*** PASSED ***
Testing computed result 3.787747796627E+04 against expected result 3.787748E+04
*** PASSED ***
Testing computed result 1.252495566243E+04 against expected result 1.252496E+04
*** PASSED ***
Testing computed result 4.133237922574E+04 against expected result 4.133238E+04
*** PASSED ***
Testing computed result 1.442499933668E+01 against expected result 1.442501E+01
*** PASSED ***
Elapsed time: 8.377546 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file 1d7i-dss-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  1d7i-dss-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file 1d7i-dss-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from 1d7i-dss-complex.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1677 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Reading PQR-format atom data from dss-min.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  14 atoms
  Centered at (1.734e+01, 1.921e+01, 2.050e+01)
  Net charge -8.33e-17 e
Reading PQR-format atom data from 1d7i-min.pqr.
  1663 atoms
  Centered at (2.526e+01, 1.899e+01, 1.912e+01)
  Net charge 9.91e-01 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (complex-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 122.425 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.634884642408E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #2 (complex-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.003177540425E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.264965939588E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (complex-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  122.425 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.301801664829E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (dss-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.942232645345E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (dss-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.677798535473E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (dss-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.171079106781E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #8 (dss-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  62.528 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.697869784185E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (1d7i-solv-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.507068451372E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #10 (1d7i-solv-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  30.4176 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.835075772299E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (1d7i-ref-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (25.264, 18.988, 19.122)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.252495566243E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (1d7i-ref-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  4.87072 A
  Current memory usage:  121.977 MB total, 222.305 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (17.340, 19.211, 20.503)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.010 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.010 M concentration
    2.000 A-radius, -1.000 e-charge, 0.010 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.133237922574E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) end
  Local net energy (PE 0) = -2.986241244040E+03 kJ/mol
  Global net ELEC energy = -2.986241244040E+03 kJ/mol

print energy 6 (dss-solv-fine) - 8 (dss-ref-fine) end
  Local net energy (PE 0) = -2.007124871262E+01 kJ/mol
  Global net ELEC energy = -2.007124871262E+01 kJ/mol

print energy 10 (1d7i-solv-fine) - 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = -2.981621502756E+03 kJ/mol
  Global net ELEC energy = -2.981621502756E+03 kJ/mol

print energy 2 (complex-solv-fine) - 4 (complex-ref-fine) - 6 (dss-solv-fine) + 8 (dss-ref-fine) - 10 (1d7i-solv-fine) + 12 (1d7i-ref-fine) end
  Local net energy (PE 0) = 1.545150742844E+01 kJ/mol
  Global net ELEC energy = 1.545150742844E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 222.305 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file 1d7i-dss-smol.out
RESULT 9634.884642408
RESULT 40031.77540425
RESULT 12649.65939588
RESULT 43018.01664829
RESULT 79.42232645345
RESULT 1677.798535473
RESULT 117.1079106781
RESULT 1697.869784185
RESULT 9507.068451372
RESULT 38350.75772299
RESULT 12524.95566243
RESULT 41332.37922574
RESULT -2986.24124404
RESULT -20.07124871262
RESULT -2981.621502756
RESULT 15.45150742844
Testing computed result 9.634884642408E+03 against expected result 9.634885E+03
*** PASSED ***
Testing computed result 4.003177540425E+04 against expected result 4.003178E+04
*** PASSED ***
Testing computed result 1.264965939588E+04 against expected result 1.264966E+04
*** PASSED ***
Testing computed result 4.301801664829E+04 against expected result 4.301802E+04
*** PASSED ***
Testing computed result 7.942232645345E+01 against expected result 7.942233E+01
*** PASSED ***
Testing computed result 1.677798535473E+03 against expected result 1.677799E+03
*** PASSED ***
Testing computed result 1.171079106781E+02 against expected result 1.171079E+02
*** PASSED ***
Testing computed result 1.697869784185E+03 against expected result 1.697870E+03
*** PASSED ***
Testing computed result 9.507068451372E+03 against expected result 9.507068E+03
*** PASSED ***
Testing computed result 3.835075772299E+04 against expected result 3.835076E+04
*** PASSED ***
Testing computed result 1.252495566243E+04 against expected result 1.252496E+04
*** PASSED ***
Testing computed result 4.133237922574E+04 against expected result 4.133238E+04
*** PASSED ***
Testing computed result 1.545150742844E+01 against expected result 1.545150E+01
*** PASSED ***
Elapsed time: 7.361864 seconds
--------------------------------------------------------------------------------
Total elapsed time: 31.427452 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for hca-bind section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.213600726771E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.825764811255E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.458471211905E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.093606095527E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.515433544464E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.786369323561E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.105322784838E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.533304996252E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850429388099E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.246475812665E+01 kJ/mol
  Global net ELEC energy = -5.246475812665E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 221.3600726771
RESULT 1825.764811255
RESULT 6458.471211905
RESULT 20936.06095527
RESULT 151543.3544464
RESULT 178636.9323561
RESULT 21053.22784838
RESULT 153330.4996252
RESULT 185042.9388099
RESULT -52.46475812665
Testing computed result 2.213600726771E+02 against expected result 2.213601E+02
*** PASSED ***
Testing computed result 1.825764811255E+03 against expected result 1.825765E+03
*** PASSED ***
Testing computed result 6.458471211905E+03 against expected result 6.458471E+03
*** PASSED ***
Testing computed result 2.093606095527E+04 against expected result 2.093606E+04
*** PASSED ***
Testing computed result 1.515433544464E+05 against expected result 1.515434E+05
*** PASSED ***
Testing computed result 1.786369323561E+05 against expected result 1.786369E+05
*** PASSED ***
Testing computed result 2.105322784838E+04 against expected result 2.105323E+04
*** PASSED ***
Testing computed result 1.533304996252E+05 against expected result 1.533305E+05
*** PASSED ***
Testing computed result 1.850429388099E+05 against expected result 1.850429E+05
*** PASSED ***
Testing computed result -5.246475812665E+01 against expected result -5.246476E+01
*** PASSED ***
Elapsed time: 5.725195 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from acet.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  18 atoms
  Centered at (-6.028e+00, 3.898e+00, 1.518e+01)
  Net charge -1.00e+00 e
Reading PQR-format atom data from hca.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  2482 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex.pqr.
  2500 atoms
  Centered at (-7.196e+00, 4.070e-01, 1.704e+01)
  Net charge -1.02e-14 e
Preparing to run 9 PBE calculations.
----------------------------------------
CALCULATION #1 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 62.727 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.884888131017E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.820045922544E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acet): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  62.727 MB total, 123.701 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.460002606908E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 146.516 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.189161497021E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #5 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.520000494925E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (hca): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.516 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.790436191580E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.092 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 1.500 x 1.500 x 1.500
  Grid lengths: 96.000 x 96.000 x 96.000
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.195842512312E+04 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.581 x 0.581 x 0.581
  Grid lengths: 37.181 x 37.181 x 37.181
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.537771604355E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #9 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  146.926 MB total, 245.725 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.225 x 0.225 x 0.225
  Grid lengths: 14.400 x 14.400 x 14.400
  Grid center: (-6.028, 3.898, 15.179)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.540
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.854495619747E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (acet) - 2 (hca) end
  Local net energy (PE 0) = -5.405979017066E+01 kJ/mol
  Global net ELEC energy = -5.405979017066E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 245.725 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 188.4888131017
RESULT 1820.045922544
RESULT 6460.002606908
RESULT 21891.61497021
RESULT 152000.0494925
RESULT 179043.619158
RESULT 21958.42512312
RESULT 153777.1604355
RESULT 185449.5619747
RESULT -54.05979017066
Testing computed result 1.884888131017E+02 against expected result 1.884888E+02
*** PASSED ***
Testing computed result 1.820045922544E+03 against expected result 1.820046E+03
*** PASSED ***
Testing computed result 6.460002606908E+03 against expected result 6.460003E+03
*** PASSED ***
Testing computed result 2.189161497021E+04 against expected result 2.189161E+04
*** PASSED ***
Testing computed result 1.520000494925E+05 against expected result 1.520000E+05
*** PASSED ***
Testing computed result 1.790436191580E+05 against expected result 1.790436E+05
*** PASSED ***
Testing computed result 2.195842512312E+04 against expected result 2.195843E+04
*** PASSED ***
Testing computed result 1.537771604355E+05 against expected result 1.537772E+05
*** PASSED ***
Testing computed result 1.854495619747E+05 against expected result 1.854496E+05
*** PASSED ***
Testing computed result -5.405979017066E+01 against expected result -5.405978E+01
*** PASSED ***
Elapsed time: 6.019214 seconds
--------------------------------------------------------------------------------
Total elapsed time: 11.744409 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ionize section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading XML-format atom data from acetic-acid.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading XML-format atom data from acetate.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading XML-format atom data from proton.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.823898055191E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793274462353E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.219846763777E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392741988698E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.862359524598E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.288156251610E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.267882018629E+01 kJ/mol
  Global net ELEC energy = -2.267882018629E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.997462636633E+02 kJ/mol
  Global net ELEC energy = -1.997462636633E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.974598403628E+02 kJ/mol
  Global net ELEC energy = -2.974598403628E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.745272838398E+02 kJ/mol
  Global net ELEC energy = -4.745272838398E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 5823.898055191
RESULT 9793.274462353
RESULT 5846.917564309
RESULT 9815.953282539
RESULT 8219.846763777
RESULT 13927.41988698
RESULT 8420.373979905
RESULT 14127.16615065
RESULT 3862.359524598
RESULT 6288.15625161
RESULT 4162.533113906
RESULT 6585.616091973
RESULT -22.67882018629
RESULT -199.7462636633
RESULT -297.4598403628
RESULT -474.5272838398
Testing computed result 5.823898055191E+03 against expected result 5.823898E+03
*** PASSED ***
Testing computed result 9.793274462353E+03 against expected result 9.793274E+03
*** PASSED ***
Testing computed result 5.846917564309E+03 against expected result 5.846918E+03
*** PASSED ***
Testing computed result 9.815953282539E+03 against expected result 9.815953E+03
*** PASSED ***
Testing computed result 8.219846763777E+03 against expected result 8.219847E+03
*** PASSED ***
Testing computed result 1.392741988698E+04 against expected result 1.392742E+04
*** PASSED ***
Testing computed result 8.420373979905E+03 against expected result 8.420374E+03
*** PASSED ***
Testing computed result 1.412716615065E+04 against expected result 1.412717E+04
*** PASSED ***
Testing computed result 3.862359524598E+03 against expected result 3.862360E+03
*** PASSED ***
Testing computed result 6.288156251610E+03 against expected result 6.288156E+03
*** PASSED ***
Testing computed result 4.162533113906E+03 against expected result 4.162533E+03
*** PASSED ***
Testing computed result 6.585616091973E+03 against expected result 6.585616E+03
*** PASSED ***
Testing computed result -2.267882018629E+01 against expected result -2.267882E+01
*** PASSED ***
Testing computed result -1.997462636633E+02 against expected result -1.997463E+02
*** PASSED ***
Testing computed result -2.974598403628E+02 against expected result -2.974598E+02
*** PASSED ***
Testing computed result -4.745272838398E+02 against expected result -4.745273E+02
*** PASSED ***
Elapsed time: 1.881935 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading XML-format atom data from acetic-acid.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.67e-16 e
Reading XML-format atom data from acetate.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  8 atoms
  Centered at (0.000e+00, -1.535e-01, 1.287e+00)
  Net charge -1.00e+00 e
Reading XML-format atom data from proton.xml.

Valist_readXML: Warning Warning Warning Warning Warning
Valist_readXML: The use of XML input files with parameter
Valist_readXML: files is currently not supported.
Valist_readXML: Warning Warning Warning Warning Warning

  1 atoms
  Centered at (1.780e-01, -1.286e+00, 2.937e+00)
  Net charge 1.00e+00 e
Preparing to run 12 PBE calculations.
----------------------------------------
CALCULATION #1 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 61.598 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.824172730822E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (acetic-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.793622759239E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.846917564309E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (acetic-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.815953282539E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.221328580569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #6 (acetate-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.598 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.392867783119E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #7 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.420373979905E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #8 (acetate-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.422 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.412716615065E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #9 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.863066835285E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #10 (proton-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  7.76163 A
  Current memory usage:  61.412 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.150 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.150 M concentration
    2.000 A-radius, -1.000 e-charge, 0.150 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.289649216644E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #11 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.188 x 0.188 x 0.188
  Grid lengths: 12.000 x 12.000 x 12.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 4.162533113906E+03 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #12 (proton-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.373 MB total, 122.404 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.094 x 0.094 x 0.094
  Grid lengths: 6.000 x 6.000 x 6.000
  Grid center: (0.000, -0.154, 1.287)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 2.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  293.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 6.585616091973E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (acetic-solv) - 2 (acetic-ref) end
  Local net energy (PE 0) = -2.233052329981E+01 kJ/mol
  Global net ELEC energy = -2.233052329981E+01 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) end
  Local net energy (PE 0) = -1.984883194538E+02 kJ/mol
  Global net ELEC energy = -1.984883194538E+02 kJ/mol

print energy 5 (proton-solv) - 6 (proton-ref) end
  Local net energy (PE 0) = -2.959668753288E+02 kJ/mol
  Global net ELEC energy = -2.959668753288E+02 kJ/mol

print energy 3 (acetate-solv) - 4 (acetate-ref) + 5 (proton-solv) - 6 (proton-ref) - 1 (acetic-solv) + 2 (acetic-ref) end
  Local net energy (PE 0) = -4.721246714828E+02 kJ/mol
  Global net ELEC energy = -4.721246714828E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 122.404 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 5824.172730822
RESULT 9793.622759239
RESULT 5846.917564309
RESULT 9815.953282539
RESULT 8221.328580569
RESULT 13928.67783119
RESULT 8420.373979905
RESULT 14127.16615065
RESULT 3863.066835285
RESULT 6289.649216644
RESULT 4162.533113906
RESULT 6585.616091973
RESULT -22.33052329981
RESULT -198.4883194538
RESULT -295.9668753288
RESULT -472.1246714828
Testing computed result 5.824172730822E+03 against expected result 5.824173E+03
*** PASSED ***
Testing computed result 9.793622759239E+03 against expected result 9.793623E+03
*** PASSED ***
Testing computed result 5.846917564309E+03 against expected result 5.846918E+03
*** PASSED ***
Testing computed result 9.815953282539E+03 against expected result 9.815953E+03
*** PASSED ***
Testing computed result 8.221328580569E+03 against expected result 8.221329E+03
*** PASSED ***
Testing computed result 1.392867783119E+04 against expected result 1.392868E+04
*** PASSED ***
Testing computed result 8.420373979905E+03 against expected result 8.420374E+03
*** PASSED ***
Testing computed result 1.412716615065E+04 against expected result 1.412717E+04
*** PASSED ***
Testing computed result 3.863066835285E+03 against expected result 3.863067E+03
*** PASSED ***
Testing computed result 6.289649216644E+03 against expected result 6.289649E+03
*** PASSED ***
Testing computed result 4.162533113906E+03 against expected result 4.162533E+03
*** PASSED ***
Testing computed result 6.585616091973E+03 against expected result 6.585616E+03
*** PASSED ***
Testing computed result -2.233052329981E+01 against expected result -2.233050E+01
*** PASSED ***
Testing computed result -1.984883194538E+02 against expected result -1.984883E+02
*** PASSED ***
Testing computed result -2.959668753288E+02 against expected result -2.959669E+02
*** PASSED ***
Testing computed result -4.721246714828E+02 against expected result -4.721247E+02
*** PASSED ***
Elapsed time: 1.739522 seconds
--------------------------------------------------------------------------------
Total elapsed time: 3.621457 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ion-pmf section
--------------------------------------------------------------------------------
Testing input file ion-pmf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  ion-pmf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file ion-pmf.in...
rank 0 size 1...
Parsed input file.
Reading parameter data from parm.dat.
Got paths for 1 molecules
Reading PDB-format atom data from ion-pmf.pdb.
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.106 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 7.839535983197E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.760e+03  -4.398e-05  -7.763e-05
mgF  qf  0  -3.767e+03  -1.730e-05  -2.384e-05
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  6.148e+00  -2.668e-05  -5.379e-05
mgF  tot 1  -3.596e+03  -5.403e-05  -1.012e-04
mgF  qf  1  -3.598e+03  -2.253e-05  -3.831e-05
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  2.883e+00  -3.150e-05  -6.291e-05
Vpmg_ibForce:  No force for zero ionic strength!
Vpmg_ibForce:  No force for zero ionic strength!
----------------------------------------
CALCULATION #2 (ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.106 MB total, 61.155 MB high water
  Using cubic spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 1.000
  Solvent dielectric: 1.000
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  All-atom solvent forces will be calculated
  Total electrostatic energy = 8.964727588811E+03 kJ/mol
  Calculating forces...
  Printing per-atom forces for molecule 1 (kJ/mol/A)
  Legend:
    tot n -- total force for atom n
    qf  n -- fixed charge force for atom n
    db  n -- dielectric boundary force for atom n
    ib  n -- ionic boundary force for atom n
mgF  tot 0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  qf  0  -3.850e+03  -4.055e-06  -7.703e-06
mgF  ib  0  0.000e+00  0.000e+00  0.000e+00
mgF  db  0  0.000e+00  0.000e+00  0.000e+00
mgF  tot 1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  qf  1  -3.514e+03  -4.163e-06  -7.690e-06
mgF  ib  1  0.000e+00  0.000e+00  0.000e+00
mgF  db  1  0.000e+00  0.000e+00  0.000e+00
----------------------------------------
CALCULATION #3 (asolv): APOLAR
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot  n -- Total force for atom n
    sasa n -- SASA force for atom n
    sav  n -- SAV force for atom n
    wca  n -- WCA force for atom n

    gamma    0.000720
    pressure 0.000000
    bconc    0.033000 

  tot  0 2.715e-02 9.130e-07 9.130e-07
  sasa 0 -1.100e+01 0.000e+00 0.000e+00
  sav  0 0.000e+00 0.000e+00 0.000e+00
  wca  0 -5.827e-01 -2.767e-05 -2.767e-05
  tot  1 -2.723e-02 9.133e-07 9.133e-07
  sasa 1 1.112e+01 0.000e+00 0.000e+00
  sav  1 0.000e+00 0.000e+00 0.000e+00
  wca  1 5.827e-01 -2.767e-05 -2.767e-05


Solvent Accessible Surface Area (SASA) for each atom:
  SASA for atom 0: 1.153275282828E+02
  SASA for atom 1: 1.153114143344E+02

Total solvent accessible surface area: 230.639 A^2

Surface tension*area energies (gamma * SASA) for each atom:
  Surface tension*area energy for atom 0: 8.303582036361E-02
  Surface tension*area energy for atom 1: 8.302421832080E-02

Total surface tension energy: 0.16606 kJ/mol

Total solvent accessible volume: 0 A^3

Total pressure*volume energy: 0 kJ/mol

WCA dispersion Energies for each atom:
  WCA energy for atom 0: -6.909718359932E+00
  WCA energy for atom 1: -6.909422551724E+00

Total WCA energy: -13.8191 kJ/mol

Total non-polar energy = -1.365308087297E+01 kJ/mol
----------------------------------------
PRINT STATEMENTS

print energy 1 (solv) - 2 (ref) end
  Local net energy (PE 0) = -1.125191605614E+03 kJ/mol
  Global net ELEC energy = -1.125191605614E+03 kJ/mol
print force 1 (solv) - 2 (ref) end
  Printing per-atom forces (kJ/mol/A).
  Legend:
    tot n -- Total force for atom n
    qf  n -- Fixed charge force for atom n
    db  n -- Dielectric boundary force for atom n
    ib  n -- Ionic boundary force for atom n
    tot all -- Total force for system
  qf  0  8.398642197666E+01  -1.324564548552E-05  -1.613435632529E-05
  ib  0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  0  6.148357059184E+00  -2.667517425897E-05  -5.378919678211E-05
  tot 0  9.013477903584E+01  -3.992081974449E-05  -6.992355310740E-05
  qf  1  -8.466423642736E+01  -1.836748045969E-05  -3.062224428458E-05
  ib  1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  db  1  2.882739230548E+00  -3.149946357588E-05  -6.291495506459E-05
  tot 1  -8.178149719681E+01  -4.986694403557E-05  -9.353719934917E-05
  tot all 8.353281839029E+00  -8.978776378007E-05  -1.634607524566E-04

print APOL energy 1 (asolv) end
  Global net APOL energy = -1.365308087297E+01 kJ/mol

print APOL force 1 (asolv) end
  Printing per atom forces (kJ/mol/A)
  Legend:
    tot   n -- Total force for atom n
    sasa  n -- SASA force for atom n
    sav   n -- SAV force for atom n
    wca   n -- WCA force for atom n
    tot all -- Total force for system
  sasa  0  -1.099776974333E+01  0.000000000000E+00  0.000000000000E+00
  sav   0  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   0  -5.826577086437E-01  -2.766670515801E-05  -2.766670515838E-05
  tot   0  -1.158042745197E+01  -2.766670515801E-05  -2.766670515838E-05
  sasa  1  1.111862435589E+01  0.000000000000E+00  0.000000000000E+00
  sav   1  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
  wca   1  5.826560767576E-01  -2.767485007141E-05  -2.767485007183E-05
  tot   1  1.170128043265E+01  -2.767485007141E-05  -2.767485007183E-05
  tot all  1.208529806779E-01  -5.534155522943E-05  -5.534155523021E-05
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 1 molecules
Final memory usage:  60.711 MB total, 62.250 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file ion-pmf.out
RESULT 7839.535983197
RESULT 8964.727588811
RESULT -1125.191605614
RESULT -13.65308087297
Testing computed result 7.839535983197E+03 against expected result 7.839536E+03
*** PASSED ***
Testing computed result 8.964727588811E+03 against expected result 8.964728E+03
*** PASSED ***
Testing computed result -1.125191605614E+03 against expected result -1.125192E+03
*** PASSED ***
Elapsed time: 5.029809 seconds
--------------------------------------------------------------------------------
Total elapsed time: 5.029809 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for ion-protein section
--------------------------------------------------------------------------------
Testing input file apbs-mol-pdiel2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-pdiel2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-pdiel2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.525554553704E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.967613272771E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.050875942181E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.559159533658E+01 kJ/mol
  Global net ELEC energy = 1.559159533658E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-pdiel2.out
RESULT 7525.554553704
RESULT 2967.613272771
RESULT 10508.75942181
RESULT 15.59159533658
Testing computed result 7.525554553704E+03 against expected result 7.525555E+03
*** PASSED ***
Testing computed result 2.967613272771E+03 against expected result 2.967613E+03
*** PASSED ***
Testing computed result 1.050875942181E+04 against expected result 1.050876E+04
*** PASSED ***
Testing computed result 1.559159533658E+01 against expected result 1.559160E+01
*** PASSED ***
Elapsed time: 9.357712 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-pdiel2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-pdiel2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-pdiel2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 7.561237446444E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.974076897757E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.055886976547E+04 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 2.355542126539E+01 kJ/mol
  Global net ELEC energy = 2.355542126539E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-pdiel2.out
RESULT 7561.237446444
RESULT 2974.076897757
RESULT 10558.86976547
RESULT 23.55542126539
Testing computed result 7.561237446444E+03 against expected result 7.561237E+03
*** PASSED ***
Testing computed result 2.974076897757E+03 against expected result 2.974077E+03
*** PASSED ***
Testing computed result 1.055886976547E+04 against expected result 1.055887E+04
*** PASSED ***
Testing computed result 2.355542126539E+01 against expected result 2.355542E+01
*** PASSED ***
Elapsed time: 7.793258 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-pdiel12.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-pdiel12.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-pdiel12.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.363584355927E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.110802147229E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.892691797082E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.802722643145E+01 kJ/mol
  Global net ELEC energy = 1.802722643145E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-pdiel12.out
RESULT 1363.584355927
RESULT 511.0802147229
RESULT 1892.691797082
RESULT 18.02722643145
Testing computed result 1.363584355927E+03 against expected result 1.363584E+03
*** PASSED ***
Testing computed result 5.110802147229E+02 against expected result 5.110802E+02
*** PASSED ***
Testing computed result 1.892691797082E+03 against expected result 1.892692E+03
*** PASSED ***
Testing computed result 1.802722643145E+01 against expected result 1.802723E+01
*** PASSED ***
Elapsed time: 7.346697 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-pdiel12.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-pdiel12.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-pdiel12.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from small491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  259 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 1.97e+01 e
Reading PQR-format atom data from 491.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (2.998e+02, 1.629e+02, 8.934e+01)
  Net charge 2.00e+00 e
Reading PQR-format atom data from complex.pqr.
  260 atoms
  Centered at (2.898e+02, 1.679e+02, 8.192e+01)
  Net charge 2.17e+01 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (protein): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.491 MB total, 518.491 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 1
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.366571366426E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (ion): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  499.862 MB total, 518.560 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 2
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 5.108315415905E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  13.5959 A
  Current memory usage:  518.565 MB total, 518.565 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 129 x 129 x 129
  Grid spacings: 0.523 x 0.523 x 0.586
  Grid lengths: 67.000 x 67.000 x 75.000
  Grid center: (289.756, 167.946, 81.925)
  Multigrid levels: 6
  Molecule ID: 3
  Nonlinear traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.050 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.050 M concentration
    2.000 A-radius, -1.000 e-charge, 0.050 M concentration
  Solute dielectric: 12.000
  Solvent dielectric: 78.400
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.896685358215E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (protein) - 2 (ion) end
  Local net energy (PE 0) = 1.928245019843E+01 kJ/mol
  Global net ELEC energy = 1.928245019843E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 518.565 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-pdiel12.out
RESULT 1366.571366426
RESULT 510.8315415905
RESULT 1896.685358215
RESULT 19.28245019843
Testing computed result 1.366571366426E+03 against expected result 1.366571E+03
*** PASSED ***
Testing computed result 5.108315415905E+02 against expected result 5.108315E+02
*** PASSED ***
Testing computed result 1.896685358215E+03 against expected result 1.896685E+03
*** PASSED ***
Testing computed result 1.928245019843E+01 against expected result 1.928245E+01
*** PASSED ***
Elapsed time: 7.533516 seconds
--------------------------------------------------------------------------------
Total elapsed time: 32.031183 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for pka-lig section
--------------------------------------------------------------------------------
Testing input file apbs-mol-vdw.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-vdw.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.224988750664E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.049695084686E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.818450789522E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.008254338259E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.840918409896E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.113304681884E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 8.083515648730E+00 kJ/mol
  Global net ELEC energy = 8.083515648730E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-vdw.out
RESULT 2224.988750664
RESULT 10496.95084686
RESULT 181845.0789522
RESULT 300825.4338259
RESULT 184091.8409896
RESULT 311330.4681884
RESULT 8.08351564873
Testing computed result 2.224988750664E+03 against expected result 2.224989E+03
*** PASSED ***
Testing computed result 1.049695084686E+04 against expected result 1.049695E+04
*** PASSED ***
Testing computed result 1.818450789522E+05 against expected result 1.818451E+05
*** PASSED ***
Testing computed result 3.008254338259E+05 against expected result 3.008254E+05
*** PASSED ***
Testing computed result 1.840918409896E+05 against expected result 1.840918E+05
*** PASSED ***
Testing computed result 3.113304681884E+05 against expected result 3.113305E+05
*** PASSED ***
Testing computed result 8.083515648730E+00 against expected result 8.083516E+00
*** PASSED ***
Elapsed time: 7.554341 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-vdw.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-vdw.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-vdw.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 204.292 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.226793167046E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  204.292 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.050504485887E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 406.001 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.827976621645E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  291.151 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.017228546773E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 533.426 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.850819075387E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  292.063 MB total, 534.806 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.122488625388E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 2.096300255723E+01 kJ/mol
  Global net ELEC energy = 2.096300255723E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 534.806 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-vdw.out
RESULT 2226.793167046
RESULT 10505.04485887
RESULT 182797.6621645
RESULT 301722.8546773
RESULT 185081.9075387
RESULT 312248.8625388
RESULT 20.96300255723
Testing computed result 2.226793167046E+03 against expected result 2.226793E+03
*** PASSED ***
Testing computed result 1.050504485887E+04 against expected result 1.050504E+04
*** PASSED ***
Testing computed result 1.827976621645E+05 against expected result 1.827977E+05
*** PASSED ***
Testing computed result 3.017228546773E+05 against expected result 3.017229E+05
*** PASSED ***
Testing computed result 1.850819075387E+05 against expected result 1.850819E+05
*** PASSED ***
Testing computed result 3.122488625388E+05 against expected result 3.122489E+05
*** PASSED ***
Testing computed result 2.096300255723E+01 against expected result 2.096296E+01
*** PASSED ***
Elapsed time: 7.006947 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-mol-surf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol-surf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.244350164274E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052149475373E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.862615690066E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.051810884053E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.886625455219E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.158218439277E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.192607686581E+02 kJ/mol
  Global net ELEC energy = 1.192607686581E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol-surf.out
RESULT 2244.350164274
RESULT 10521.49475373
RESULT 186261.5690066
RESULT 305181.0884053
RESULT 188662.5455219
RESULT 315821.8439277
RESULT 119.2607686581
Testing computed result 2.244350164274E+03 against expected result 2.244350E+03
*** PASSED ***
Testing computed result 1.052149475373E+04 against expected result 1.052149E+04
*** PASSED ***
Testing computed result 1.862615690066E+05 against expected result 1.862616E+05
*** PASSED ***
Testing computed result 3.051810884053E+05 against expected result 3.051811E+05
*** PASSED ***
Testing computed result 1.886625455219E+05 against expected result 1.886625E+05
*** PASSED ***
Testing computed result 3.158218439277E+05 against expected result 3.158218E+05
*** PASSED ***
Testing computed result 1.192607686581E+02 against expected result 1.192608E+02
*** PASSED ***
Elapsed time: 7.170629 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol-surf.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol-surf.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol-surf.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from bx6_7_lig_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  47 atoms
  Centered at (2.482e+01, -3.315e+01, 2.154e+01)
  Net charge 1.11e-16 e
Reading PQR-format atom data from bx6_7_apo_apbs.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3423 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Reading PQR-format atom data from bx6_7_bin_apbs.pqr.
  3470 atoms
  Centered at (2.897e+01, -3.251e+01, 2.702e+01)
  Net charge 1.00e+00 e
Preparing to run 6 PBE calculations.
----------------------------------------
CALCULATION #1 (lig-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 203.877 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.251466789420E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (lig-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  203.877 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 1
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.052814502873E+04 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (pka-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 405.586 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.864071689626E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #4 (pka-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.521 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 2
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.053319953673E+05 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #5 (complex-coarse): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 493.795 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.729 x 0.729 x 0.729
  Grid lengths: 70.000 x 70.000 x 70.000
  Grid center: (28.969, -32.507, 27.022)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Single Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.888027142979E+05 kJ/mol
  Calculating forces...
[focusFillBound()]: WARNING:
    Unusually large potential values
    detected on the focusing boundary!
    Convergence not guaranteed for NPBE/NRPBE calculations!

----------------------------------------
CALCULATION #6 (complex-fine): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  251.858 MB total, 494.601 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 97 x 97 x 97
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 24.000 x 24.000 x 24.000
  Grid center: (24.822, -33.153, 21.545)
  Multigrid levels: 4
  Molecule ID: 3
  Linearized traditional PBE
  Boundary conditions from focusing
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 1.400 A
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.159690177241E+05 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 6 (complex-fine) - 2 (lig-fine) - 4 (pka-fine) end
  Local net energy (PE 0) = 1.088773280806E+02 kJ/mol
  Global net ELEC energy = 1.088773280806E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 494.601 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol-surf.out
RESULT 2251.46678942
RESULT 10528.14502873
RESULT 186407.1689626
RESULT 305331.9953673
RESULT 188802.7142979
RESULT 315969.0177241
RESULT 108.8773280806
Testing computed result 2.251466789420E+03 against expected result 2.251467E+03
*** PASSED ***
Testing computed result 1.052814502873E+04 against expected result 1.052815E+04
*** PASSED ***
Testing computed result 1.864071689626E+05 against expected result 1.864072E+05
*** PASSED ***
Testing computed result 3.053319953673E+05 against expected result 3.053320E+05
*** PASSED ***
Testing computed result 1.888027142979E+05 against expected result 1.888027E+05
*** PASSED ***
Testing computed result 3.159690177241E+05 against expected result 3.159690E+05
*** PASSED ***
Testing computed result 1.088773280806E+02 against expected result 1.088773E+02
*** PASSED ***
Elapsed time: 6.590965 seconds
--------------------------------------------------------------------------------
Total elapsed time: 28.322882 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for point-pmf section
--------------------------------------------------------------------------------
Testing input file complex-0_1.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_1.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file complex-0_1.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol1.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_1.pqr.
  2 atoms
  Centered at (-2.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 8.975920687031E+01 kJ/mol
  Fixed charge energy = 89.7592 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 88.6151 kJ/mol
  Per-atom energies:
      Atom 0:  8.975920687031E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.058277719334E+02 kJ/mol
  Fixed charge energy = 205.828 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 201.106 kJ/mol
  Per-atom energies:
      Atom 0:  1.069144350786E+02 kJ/mol
      Atom 1:  9.891333685475E+01 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 1.830820799027E+01 kJ/mol
  Global net ELEC energy = 1.830820799027E+01 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.067 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_1.out
RESULT 97.76035707281
RESULT 89.75920687031
RESULT 205.8277719334
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 89.7592
RESULT 205.828
RESULT 96.5336
RESULT 88.6151
RESULT 201.106
RESULT 18.30820799027
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 8.975920687031E+01 against expected result 8.975921E+01
*** PASSED ***
Testing computed result 2.058277719334E+02 against expected result 2.058278E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 8.975920000000E+01 against expected result 8.975920E+01
*** PASSED ***
Testing computed result 2.058280000000E+02 against expected result 2.058280E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 8.861510000000E+01 against expected result 8.861510E+01
*** PASSED ***
Testing computed result 2.011060000000E+02 against expected result 2.011060E+02
*** PASSED ***
Testing computed result 1.830820799027E+01 against expected result 1.830821E+01
*** PASSED ***
Elapsed time: 0.362891 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_2.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_2.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file complex-0_2.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol2.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_2.pqr.
  2 atoms
  Centered at (-2.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.656 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.084282010393E+02 kJ/mol
  Fixed charge energy = 208.428 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 203.83 kJ/mol
  Per-atom energies:
      Atom 0:  1.022136878480E+02 kJ/mol
      Atom 1:  1.062145131913E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 8.906694086750E+00 kJ/mol
  Global net ELEC energy = 8.906694086750E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_2.out
RESULT 97.76035707281
RESULT 101.7611498797
RESULT 208.4282010393
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 101.761
RESULT 208.428
RESULT 96.5336
RESULT 100.656
RESULT 203.83
RESULT 8.90669408675
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.017611498797E+02 against expected result 1.017611E+02
*** PASSED ***
Testing computed result 2.084282010393E+02 against expected result 2.084282E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.017610000000E+02 against expected result 1.017610E+02
*** PASSED ***
Testing computed result 2.084280000000E+02 against expected result 2.084280E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.006560000000E+02 against expected result 1.006560E+02
*** PASSED ***
Testing computed result 2.038300000000E+02 against expected result 2.038300E+02
*** PASSED ***
Testing computed result 8.906694086750E+00 against expected result 8.906694E+00
*** PASSED ***
Elapsed time: 0.357656 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_3.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_3.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file complex-0_3.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol3.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (0.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_3.pqr.
  2 atoms
  Centered at (-1.500e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.337661883222E+02 kJ/mol
  Fixed charge energy = 133.766 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 132.672 kJ/mol
  Per-atom energies:
      Atom 0:  1.337661883222E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.374361452120E+02 kJ/mol
  Fixed charge energy = 237.436 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 232.924 kJ/mol
  Per-atom energies:
      Atom 0:  1.007151570480E+02 kJ/mol
      Atom 1:  1.367209881640E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 5.909599816984E+00 kJ/mol
  Global net ELEC energy = 5.909599816984E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_3.out
RESULT 97.76035707281
RESULT 133.7661883222
RESULT 237.436145212
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 133.766
RESULT 237.436
RESULT 96.5336
RESULT 132.672
RESULT 232.924
RESULT 5.909599816984
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.337661883222E+02 against expected result 1.337662E+02
*** PASSED ***
Testing computed result 2.374361452120E+02 against expected result 2.374361E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.337660000000E+02 against expected result 1.337660E+02
*** PASSED ***
Testing computed result 2.374360000000E+02 against expected result 2.374360E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.326720000000E+02 against expected result 1.326720E+02
*** PASSED ***
Testing computed result 2.329240000000E+02 against expected result 2.329240E+02
*** PASSED ***
Testing computed result 5.909599816984E+00 against expected result 5.909600E+00
*** PASSED ***
Elapsed time: 0.352295 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file complex-0_4.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  complex-0_4.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file complex-0_4.in...
rank 0 size 1...
Parsed input file.
Got paths for 3 molecules
Reading PQR-format atom data from mol0.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (-3.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from mol4.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  1 atoms
  Centered at (1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 1.00e+00 e
Reading PQR-format atom data from complex-0_4.pqr.
  2 atoms
  Centered at (-1.000e+00, 0.000e+00, 0.000e+00)
  Net charge 2.00e+00 e
Preparing to run 3 PBE calculations.
----------------------------------------
CALCULATION #1 (point1): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.060 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 9.776035707281E+01 kJ/mol
  Fixed charge energy = 97.7604 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 96.5336 kJ/mol
  Per-atom energies:
      Atom 0:  9.776035707281E+01 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (point2): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.060 MB total, 61.067 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.017611498797E+02 kJ/mol
  Fixed charge energy = 101.761 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 100.654 kJ/mol
  Per-atom energies:
      Atom 0:  1.017611498797E+02 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (complex): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (0 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.061 MB total, 61.068 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.210 x 0.210 x 0.210
  Grid lengths: 13.440 x 13.440 x 13.440
  Grid center: (0.000, 0.000, 0.000)
  Multigrid levels: 5
  Molecule ID: 3
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  0 ion species (0.000 M ionic strength):
  Solute dielectric: 78.540
  Solvent dielectric: 78.540
  Using spline-based surface definition;window = 0.300
  Temperature:  298.150 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.039516519000E+02 kJ/mol
  Fixed charge energy = 203.952 kJ/mol
  Mobile charge energy = 0 kJ/mol
  Dielectric energy = 199.493 kJ/mol
  Per-atom energies:
      Atom 0:  9.997541697022E+01 kJ/mol
      Atom 1:  1.039762349297E+02 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 3 (complex) - 1 (point1) - 2 (point2) end
  Local net energy (PE 0) = 4.430144947418E+00 kJ/mol
  Global net ELEC energy = 4.430144947418E+00 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 3 molecules
Final memory usage:  0.001 MB total, 61.068 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file complex-0_4.out
RESULT 97.76035707281
RESULT 101.7611498797
RESULT 203.9516519
RESULT 0.0
RESULT 0.0
RESULT 0.0
RESULT 97.7604
RESULT 101.761
RESULT 203.952
RESULT 96.5336
RESULT 100.654
RESULT 199.493
RESULT 4.430144947418
Testing computed result 9.776035707281E+01 against expected result 9.776036E+01
*** PASSED ***
Testing computed result 1.017611498797E+02 against expected result 1.017611E+02
*** PASSED ***
Testing computed result 2.039516519000E+02 against expected result 2.039517E+02
*** PASSED ***
Testing computed result 9.776040000000E+01 against expected result 9.776040E+01
*** PASSED ***
Testing computed result 1.017610000000E+02 against expected result 1.017610E+02
*** PASSED ***
Testing computed result 2.039520000000E+02 against expected result 2.039520E+02
*** PASSED ***
Testing computed result 9.653360000000E+01 against expected result 9.653360E+01
*** PASSED ***
Testing computed result 1.006540000000E+02 against expected result 1.006540E+02
*** PASSED ***
Testing computed result 1.994930000000E+02 against expected result 1.994930E+02
*** PASSED ***
Testing computed result 4.430144947418E+00 against expected result 4.430145E+00
*** PASSED ***
Elapsed time: 0.352848 seconds
--------------------------------------------------------------------------------
Total elapsed time: 1.425690 seconds
Test results have been logged
--------------------------------------------------------------------------------
Running tests for solv section
--------------------------------------------------------------------------------
Testing input file apbs-mol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-mol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-mol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847663548071E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.883912182952E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.732623683321E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition; no smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.123035854133E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.624863488074E+01 kJ/mol
  Global net ELEC energy = -3.624863488074E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.904121708125E+02 kJ/mol
  Global net ELEC energy = -3.904121708125E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.541635359318E+02 kJ/mol
  Global net ELEC energy = -3.541635359318E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-mol.out
RESULT 1847.663548071
RESULT 1883.912182952
RESULT 2732.623683321
RESULT 3123.035854133
RESULT -36.24863488074
RESULT -390.4121708125
RESULT -354.1635359318
Testing computed result 1.847663548071E+03 against expected result 1.847664E+03
*** PASSED ***
Testing computed result 1.883912182952E+03 against expected result 1.883912E+03
*** PASSED ***
Testing computed result 2.732623683321E+03 against expected result 2.732624E+03
*** PASSED ***
Testing computed result 3.123035854133E+03 against expected result 3.123036E+03
*** PASSED ***
Testing computed result -3.624863488074E+01 against expected result -3.624863E+01
*** PASSED ***
Testing computed result -3.904121708125E+02 against expected result -3.904121E+02
*** PASSED ***
Testing computed result -3.541635359318E+02 against expected result -3.541635E+02
*** PASSED ***
Elapsed time: 0.507316 seconds
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Testing input file apbs-smol.in

BINARY: /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/bin/apbs
INPUT:  apbs-smol.in
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.


----------------------------------------------------------------------
    APBS -- Adaptive Poisson-Boltzmann Solver
    Version 3.0
    
    Nathan A. Baker (nathan.baker@pnnl.gov)
    Pacific Northwest National Laboratory
    
    Additional contributing authors listed in the code documentation.
    
    Copyright (c) 2010-2020 Battelle Memorial Institute. Developed at the Pacific
    Northwest National Laboratory, operated by Battelle Memorial Institute, Pacific
    Northwest Division for the U.S. Department of Energy.
    
    Portions Copyright (c) 2002-2010, Washington University in St. Louis.
    Portions Copyright (c) 2002-2020, Nathan A. Baker.
    Portions Copyright (c) 1999-2002, The Regents of the University of California.
    Portions Copyright (c) 1995, Michael Holst.
    All rights reserved.
    
    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are met:
    
    * Redistributions of source code must retain the above copyright notice, this
      list of conditions and the following disclaimer.
    
    * Redistributions in binary form must reproduce the above copyright notice,
      this list of conditions and the following disclaimer in the documentation
      and/or other materials provided with the distribution.
    
    * Neither the name of the developer nor the names of its contributors may be
      used to endorse or promote products derived from this software without
      specific prior written permission.
    
    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
    ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
    (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
    ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
----------------------------------------------------------------------
    APBS uses FETK (the Finite Element ToolKit) to solve the
    Poisson-Boltzmann equation numerically.  FETK is a portable collection
    of finite element modeling class libraries developed by the Michael Holst
    research group and written in an object-oriented form of C.  FEtk is
    designed to solve general coupled systems of nonlinear partial differential
    equations using adaptive finite element methods, inexact Newton methods,
    and algebraic multilevel methods.  More information about FEtk may be found
    at <http://www.FEtk.ORG>.
----------------------------------------------------------------------
    APBS also uses Aqua to solve the Poisson-Boltzmann equation numerically.  
    Aqua is a modified form of the Holst group PMG library <http://www.FEtk.ORG>
    which has been modified by Patrice Koehl
    <http://koehllab.genomecenter.ucdavis.edu/> for improved efficiency and
    memory usage when solving the Poisson-Boltzmann equation.
----------------------------------------------------------------------
    Please cite your use of APBS as:

    Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of
    nanosystems: application to microtubules and the ribosome. Proc.
    Natl. Acad. Sci. USA 98, 10037-10041 2001.
    

This executable compiled on Jan 16 2025 at 00:00:00

Parsing input file apbs-smol.in...
rank 0 size 1...
Parsed input file.
Got paths for 2 molecules
Reading PQR-format atom data from methanol.pqr.
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
  3 atoms
  Centered at (3.086e-01, 0.000e+00, -2.417e-01)
  Net charge 5.55e-17 e
Reading PQR-format atom data from methoxide.pqr.
  2 atoms
  Centered at (0.000e+00, 0.000e+00, -1.279e-01)
  Net charge -1.00e+00 e
Preparing to run 4 PBE calculations.
----------------------------------------
CALCULATION #1 (methanol-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.253 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.847860440020E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #2 (methanol-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.253 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.309, 0.000, -0.242)
  Multigrid levels: 5
  Molecule ID: 1
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 1.885436377745E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #3 (methoxide-solv): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 78.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 2.734040568569E+03 kJ/mol
  Calculating forces...
----------------------------------------
CALCULATION #4 (methoxide-ref): MULTIGRID
  Setting up problem...
  Vpbe_ctor:  Using max ion radius (2 A) for exclusion function
  Debye length:  0 A
  Current memory usage:  61.250 MB total, 61.328 MB high water
  Using linear spline charge discretization.
  Grid dimensions: 65 x 65 x 65
  Grid spacings: 0.250 x 0.250 x 0.250
  Grid lengths: 16.000 x 16.000 x 16.000
  Grid center: (0.000, 0.000, -0.128)
  Multigrid levels: 5
  Molecule ID: 2
  Linearized traditional PBE
  Multiple Debye-Huckel sphere boundary conditions
  2 ion species (0.000 M ionic strength):
    2.000 A-radius, 1.000 e-charge, 0.000 M concentration
    2.000 A-radius, -1.000 e-charge, 0.000 M concentration
  Solute dielectric: 2.000
  Solvent dielectric: 1.000
  Using "molecular" surface definition;harmonic average smoothing
  Solvent probe radius: 0.000 A
  Temperature:  300.000 K
  Electrostatic energies will be calculated
  Total electrostatic energy = 3.125279428954E+03 kJ/mol
  Calculating forces...
----------------------------------------
PRINT STATEMENTS

print energy 1 (methanol-solv) - 2 (methanol-ref) end
  Local net energy (PE 0) = -3.757593772493E+01 kJ/mol
  Global net ELEC energy = -3.757593772493E+01 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) end
  Local net energy (PE 0) = -3.912388603848E+02 kJ/mol
  Global net ELEC energy = -3.912388603848E+02 kJ/mol

print energy 3 (methoxide-solv) - 4 (methoxide-ref) - 1 (methanol-solv) + 2 (methanol-ref) end
  Local net energy (PE 0) = -3.536629226599E+02 kJ/mol
  Global net ELEC energy = -3.536629226599E+02 kJ/mol
----------------------------------------
CLEANING UP AND SHUTTING DOWN...
Destroying force arrays.
No energy arrays to destroy.
Destroying multigrid structures.
Destroying 2 molecules
Final memory usage:  0.001 MB total, 61.328 MB high water


Thanks for using APBS!

Checking for intermidiate energies in input file apbs-smol.out
RESULT 1847.86044002
RESULT 1885.436377745
RESULT 2734.040568569
RESULT 3125.279428954
RESULT -37.57593772493
RESULT -391.2388603848
RESULT -353.6629226599
Testing computed result 1.847860440020E+03 against expected result 1.847860E+03
*** PASSED ***
Testing computed result 1.885436377745E+03 against expected result 1.885436E+03
*** PASSED ***
Testing computed result 2.734040568569E+03 against expected result 2.734041E+03
*** PASSED ***
Testing computed result 3.125279428954E+03 against expected result 3.125279E+03
*** PASSED ***
Testing computed result -3.757593772493E+01 against expected result -3.757594E+01
*** PASSED ***
Testing computed result -3.912388603848E+02 against expected result -3.912388E+02
*** PASSED ***
Testing computed result -3.536629226599E+02 against expected result -3.536629E+02
*** PASSED ***
Elapsed time: 0.510404 seconds
--------------------------------------------------------------------------------
Total elapsed time: 1.017720 seconds
Test results have been logged
--------------------------------------------------------------------------------
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: apbs-3.0.0-26.fc42.x86_64
Provides: apbs = 3.0.0-26.fc42 apbs(x86-64) = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libm.so.6()(64bit) libmaloc.so.1()(64bit) rtld(GNU_HASH)
Processing files: apbs-tools-3.0.0-26.fc42.x86_64
warning: absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib64/python3.13/site-packages/apbs/psize.py
Provides: apbs-tools = 3.0.0-26.fc42 apbs-tools(x86-64) = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) rtld(GNU_HASH)
Processing files: apbs-libs-3.0.0-26.fc42.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FjebgS
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ cd apbs-3.0.0
+ DOCDIR=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-libs
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-libs
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/README.md /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.S1LHgQ
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ cd apbs-3.0.0
+ LICENSEDIR=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/LICENSE.md /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/COPYING /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/iapbs-COPYING /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: apbs-libs = 3.0.0-26.fc42 apbs-libs(x86-64) = 3.0.0-26.fc42 libapbs.so.1()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: apbs-devel-3.0.0-26.fc42.x86_64
Provides: apbs-devel = 3.0.0-26.fc42 apbs-devel(x86-64) = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libapbs.so.1()(64bit)
Processing files: apbs-doc-3.0.0-26.fc42.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.96YchT
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ cd apbs-3.0.0
+ DOCDIR=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-doc
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/build/doc /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/doc/apbs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5GUVsP
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ cd apbs-3.0.0
+ LICENSEDIR=/builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-doc
+ cp -pr /builddir/build/BUILD/apbs-3.0.0-build/apbs-3.0.0/LICENSE.md /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT/usr/share/licenses/apbs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: apbs-doc = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-apbs-3.0.0-26.fc42.x86_64
Provides: python-apbs = 3.0.0-26.fc42 python3-apbs = 3.0.0-26.fc42 python3-apbs(x86-64) = 3.0.0-26.fc42 python3.13-apbs = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) libpython3.13.so.1.0()(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Obsoletes: apbs-libs < 0:3.0.0-11 python-apbs < 3.0.0-26.fc42
Processing files: apbs-debugsource-3.0.0-26.fc42.x86_64
Provides: apbs-debugsource = 3.0.0-26.fc42 apbs-debugsource(x86-64) = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: apbs-debuginfo-3.0.0-26.fc42.x86_64
Provides: apbs-debuginfo = 3.0.0-26.fc42 apbs-debuginfo(x86-64) = 3.0.0-26.fc42 debuginfo(build-id) = 1d756f3cc812eb54df4e696eeb279c1c893ef69c
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-26.fc42
Processing files: apbs-tools-debuginfo-3.0.0-26.fc42.x86_64
Provides: apbs-tools-debuginfo = 3.0.0-26.fc42 apbs-tools-debuginfo(x86-64) = 3.0.0-26.fc42 debuginfo(build-id) = 1136e2bcbb514b5a690fe5265df5315ba65ebae1 debuginfo(build-id) = 19abb009fa271fe4bf7dc81af4505c420ef2ebe5 debuginfo(build-id) = 2eabe339068bc568a51233ec5b716c487ddf655f debuginfo(build-id) = 411b633a310047ebef3ca4f0dc1ff7278a10a0ac debuginfo(build-id) = 6480a82862aa414af411fbcdff68c7d80732022d debuginfo(build-id) = 843d2eb85499b234eead2bb5ba0a0e2715f1d1c8 debuginfo(build-id) = 865d615edf07a547f20e21a11290d0285e4433d3 debuginfo(build-id) = 8776f35d4f2e6e183263ac64e7f38044eba432cc debuginfo(build-id) = 915626234e673d91208e1705714b943ea1a21d5b debuginfo(build-id) = 9696fa7f85f4e25694368e55444140b9abb06e96 debuginfo(build-id) = 9c68e48c3e8a38b20aba8a6e9f3690a275efb9af debuginfo(build-id) = d11124eac1beafa34a6494e5a11178e1feb4aa26 debuginfo(build-id) = d42c8bf6069e28cfeea99316b2c81bfca894c372 debuginfo(build-id) = e8a6d2c12c7674ec51d341bf55e7dfdb2bfd3be5 debuginfo(build-id) = f22b724d7300e61a6cfc4b7221585973163da295 debuginfo(build-id) = f4004ceeb8ef6a89b8feefe4ce93fc4321a9492d debuginfo(build-id) = f563cf8af6bd7648813f5db7d9706b7d1eb8a127
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-26.fc42
Processing files: apbs-libs-debuginfo-3.0.0-26.fc42.x86_64
Provides: apbs-libs-debuginfo = 3.0.0-26.fc42 apbs-libs-debuginfo(x86-64) = 3.0.0-26.fc42 debuginfo(build-id) = a23a9ef91625b043bf64e785cd48a247975cf38b libapbs.so.1-3.0.0-26.fc42.x86_64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-26.fc42
Processing files: python3-apbs-debuginfo-3.0.0-26.fc42.x86_64
Provides: debuginfo(build-id) = 94fb4e5eaf29b9cc34af807a6460ec1f30b129ac python-apbs-debuginfo = 3.0.0-26.fc42 python3-apbs-debuginfo = 3.0.0-26.fc42 python3-apbs-debuginfo(x86-64) = 3.0.0-26.fc42 python3.13-apbs-debuginfo = 3.0.0-26.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: apbs-debugsource(x86-64) = 3.0.0-26.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/apbs-3.0.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-apbs-debuginfo-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-apbs-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-3.0.0-26.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/apbs-doc-3.0.0-26.fc42.noarch.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.x1umBV
+ umask 022
+ cd /builddir/build/BUILD/apbs-3.0.0-build
+ test -d /builddir/build/BUILD/apbs-3.0.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/apbs-3.0.0-build
+ rm -rf /builddir/build/BUILD/apbs-3.0.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib64/python3.13/site-packages/apbs/psize.py
Finish: rpmbuild apbs-3.0.0-26.fc42.src.rpm
Finish: build phase for apbs-3.0.0-26.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1737026491.844736/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/apbs-3.0.0-26.fc42.src.rpm) Config(child) 15 minutes 20 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "apbs-libs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs-tools-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "src"
        },
        {
            "name": "apbs-libs",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-apbs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs-doc",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "noarch"
        },
        {
            "name": "apbs-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs-devel",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs-debugsource",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs-tools",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        },
        {
            "name": "apbs",
            "epoch": null,
            "version": "3.0.0",
            "release": "26.fc42",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished