Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18e' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8246338-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.1 PID: 7087 Logging PID: 7088 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 8246338, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f9e83806c49ff5bd0288b26e742db65f309b9a45', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12:pr:6/morphio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'morphio', 'package_version': '3.4.0-1', 'project_dirname': 'python3.12:pr:6', 'project_name': 'python3.12', 'project_owner': '@python', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@python/python3.12/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': '@python/python3.12--https://src.fedoraproject.org/user/packit', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/packit', 'tags': [], 'task_id': '8246338-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12:pr:6/morphio /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python3.12:pr:6/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio'... Running: git checkout f9e83806c49ff5bd0288b26e742db65f309b9a45 -- cmd: ['git', 'checkout', 'f9e83806c49ff5bd0288b26e742db65f309b9a45', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio rc: 0 stdout: stderr: Note: switching to 'f9e83806c49ff5bd0288b26e742db65f309b9a45'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f9e8380 automatic import of morphio Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading MorphIO-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o MorphIO-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.12:pr:6/morphio/MorphIO-3.4.0.tar.gz/md5/4d9df366700ab607e7042fbd1e358b66/MorphIO-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 3489k 100 3489k 0 0 3656k 0 --:--:-- --:--:-- --:--:-- 3654k INFO: Reading stdout from command: md5sum MorphIO-3.4.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731409032.722486 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731409032.722486 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio/morphio.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1731409032.722486/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 18.4 MiB/s | 35.4 MiB | 00m02s updates 100% | 3.7 MiB/s | 4.3 MiB | 00m01s Copr repository 100% | 11.8 MiB/s | 3.5 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 42.4 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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1.7.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs x86_64 1.7.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 127.7 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.16.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB rpm x86_64 4.20.0-1.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 copr_base 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 copr_base 726.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 copr_base 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 257~rc1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB util-linux-core x86_64 2.40.2-8.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.x86_64 100% | 603.7 KiB/s | 52.5 KiB | 00m00s [ 2/154] bash-0:5.2.37-1.fc42.x86_64 100% | 14.9 MiB/s | 1.8 MiB | 00m00s [ 3/154] cpio-0:2.15-2.fc41.x86_64 100% | 8.0 MiB/s | 285.2 KiB | 00m00s [ 4/154] coreutils-0:9.5-10.fc42.x86_6 100% | 8.5 MiB/s | 1.1 MiB | 00m00s [ 5/154] fedora-release-common-0:42-0. 100% | 1.3 MiB/s | 23.5 KiB | 00m00s [ 6/154] diffutils-0:3.10-8.fc41.x86_6 100% | 18.5 MiB/s | 397.2 KiB | 00m00s [ 7/154] findutils-1:4.10.0-4.fc41.x86 100% | 22.9 MiB/s | 539.8 KiB | 00m00s [ 8/154] glibc-minimal-langpack-0:2.40 100% | 4.9 MiB/s | 119.5 KiB | 00m00s [ 9/154] grep-0:3.11-9.fc41.x86_64 100% | 14.1 MiB/s | 289.7 KiB | 00m00s [ 10/154] gawk-0:5.3.0-4.fc41.x86_64 100% | 25.2 MiB/s | 1.1 MiB | 00m00s [ 11/154] gzip-0:1.13-2.fc41.x86_64 100% | 8.4 MiB/s | 164.1 KiB | 00m00s [ 12/154] info-0:7.1.1-2.fc42.x86_64 100% | 9.9 MiB/s | 183.2 KiB | 00m00s [ 13/154] patch-0:2.7.6-25.fc41.x86_64 100% | 7.1 MiB/s | 131.0 KiB | 00m00s [ 14/154] redhat-rpm-config-0:296-1.fc4 100% | 4.1 MiB/s | 75.7 KiB | 00m00s [ 15/154] sed-0:4.9-3.fc41.x86_64 100% | 15.1 MiB/s | 309.3 KiB | 00m00s [ 16/154] rpm-build-0:4.20.0-1.fc42.x86 100% | 1.6 MiB/s | 75.7 KiB | 00m00s [ 17/154] shadow-utils-2:4.16.0-7.fc42. 100% | 34.0 MiB/s | 1.3 MiB | 00m00s [ 18/154] tar-2:1.35-4.fc41.x86_64 100% | 30.8 MiB/s | 852.1 KiB | 00m00s [ 19/154] unzip-0:6.0-64.fc41.x86_64 100% | 8.2 MiB/s | 184.9 KiB | 00m00s [ 20/154] which-0:2.21-42.fc41.x86_64 100% | 2.4 MiB/s | 41.6 KiB | 00m00s [ 21/154] xz-1:5.6.3-2.fc42.x86_64 100% | 17.3 MiB/s | 461.7 KiB | 00m00s [ 22/154] util-linux-0:2.40.2-8.fc42.x8 100% | 21.1 MiB/s | 1.1 MiB | 00m00s [ 23/154] fedora-repos-0:42-0.3.noarch 100% | 483.8 KiB/s | 9.2 KiB | 00m00s [ 24/154] coreutils-common-0:9.5-10.fc4 100% | 47.6 MiB/s | 2.1 MiB | 00m00s [ 25/154] glibc-0:2.40.9000-16.fc42.x86 100% | 44.8 MiB/s | 2.2 MiB | 00m00s [ 26/154] glibc-common-0:2.40.9000-16.f 100% | 9.6 MiB/s | 404.6 KiB | 00m00s [ 27/154] fedora-gpg-keys-0:42-0.3.noar 100% | 6.7 MiB/s | 123.4 KiB | 00m00s [ 28/154] fedora-repos-rawhide-0:42-0.3 100% | 515.5 KiB/s | 8.8 KiB | 00m00s [ 29/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 2.2 MiB/s | 41.1 KiB | 00m00s [ 30/154] libacl-0:2.3.2-2.fc41.x86_64 100% | 1.3 MiB/s | 24.5 KiB | 00m00s [ 31/154] glibc-gconv-extra-0:2.40.9000 100% | 36.1 MiB/s | 1.7 MiB | 00m00s [ 32/154] libselinux-0:3.7-6.fc42.x86_6 100% | 7.9 MiB/s | 89.1 KiB | 00m00s [ 33/154] audit-libs-0:4.0.2-1.fc42.x86 100% | 8.8 MiB/s | 126.7 KiB | 00m00s [ 34/154] libattr-0:2.5.2-4.fc41.x86_64 100% | 1.0 MiB/s | 18.2 KiB | 00m00s [ 35/154] libeconf-0:0.7.4-3.fc42.x86_6 100% | 1.9 MiB/s | 34.6 KiB | 00m00s [ 36/154] libsemanage-0:3.7-3.fc42.x86_ 100% | 11.5 MiB/s | 117.7 KiB | 00m00s [ 37/154] libxcrypt-0:4.4.36-10.fc42.x8 100% | 6.8 MiB/s | 119.0 KiB | 00m00s [ 38/154] pam-libs-0:1.7.0-2.fc42.x86_6 100% | 3.3 MiB/s | 57.9 KiB | 00m00s [ 39/154] setup-0:2.15.0-5.fc41.noarch 100% | 7.2 MiB/s | 148.3 KiB | 00m00s [ 40/154] pam-0:1.7.0-2.fc42.x86_64 100% | 16.0 MiB/s | 523.5 KiB | 00m00s [ 41/154] ansible-srpm-macros-0:1-16.fc 100% | 1.2 MiB/s | 20.8 KiB | 00m00s [ 42/154] build-reproducibility-srpm-ma 100% | 698.7 KiB/s | 11.2 KiB | 00m00s [ 43/154] add-determinism-0:0.4.3-1.fc4 100% | 34.0 MiB/s | 904.4 KiB | 00m00s [ 44/154] dwz-0:0.15-8.fc42.x86_64 100% | 7.5 MiB/s | 139.1 KiB | 00m00s [ 45/154] efi-srpm-macros-0:5-12.fc41.n 100% | 1.3 MiB/s | 22.4 KiB | 00m00s [ 46/154] file-0:5.45-7.fc41.x86_64 100% | 2.8 MiB/s | 49.1 KiB | 00m00s [ 47/154] xz-libs-1:5.6.3-2.fc42.x86_64 100% | 468.1 KiB/s | 111.9 KiB | 00m00s [ 48/154] fonts-srpm-macros-1:2.0.5-17. 100% | 1.5 MiB/s | 27.0 KiB | 00m00s [ 49/154] forge-srpm-macros-0:0.4.0-1.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [ 50/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 442.3 KiB/s | 8.0 KiB | 00m00s [ 51/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 569.8 KiB/s | 9.1 KiB | 00m00s [ 52/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 559.5 KiB/s | 9.0 KiB | 00m00s [ 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-------------------------------------------------------------------------------- [154/154] Total 100% | 29.0 MiB/s | 52.9 MiB | 00m02s Running transaction Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/156] Verify package files 100% | 747.0 B/s | 154.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Running pre-transaction scriptlet: crypto-policies-0:20241106-1.git35892de.f >>> Stop pre-transaction scriptlet: crypto-policies-0:20241106-1.git35892de.fc42 [ 2/156] Prepare transaction 100% | 1.8 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-6. 100% | 132.9 MiB/s | 272.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-6.fc42.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-6.fc42.x86_64 [ 4/156] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 5/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 6/156] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 7/156] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 8/156] Installing fedora-release-com 100% | 11.7 MiB/s | 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00m00s [ 94/156] Installing xz-1:5.6.3-2.fc42. 100% | 112.5 MiB/s | 1.2 MiB | 00m00s [ 95/156] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB | 00m00s [ 96/156] Installing util-linux-core-0: 100% | 117.5 MiB/s | 1.5 MiB | 00m00s [ 97/156] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [ 98/156] Installing tar-2:1.35-4.fc41. 100% | 109.6 MiB/s | 3.0 MiB | 00m00s [ 99/156] Installing libsemanage-0:3.7- 100% | 97.6 MiB/s | 299.8 KiB | 00m00s [100/156] Installing shadow-utils-2:4.1 100% | 75.8 MiB/s | 4.1 MiB | 00m00s [101/156] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [102/156] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [103/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [104/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [105/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [106/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [107/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [108/156] Installing openblas-srpm-macr 100% | 191.4 KiB/s | 392.0 B | 00m00s [109/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [110/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [111/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [112/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [113/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [114/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [115/156] Installing coreutils-common-0 100% | 186.5 MiB/s | 11.2 MiB | 00m00s [116/156] Installing openssl-libs-1:3.2 100% | 211.6 MiB/s | 7.8 MiB | 00m00s [117/156] Installing coreutils-0:9.5-10 100% | 112.3 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.fc42.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.fc42.noar [118/156] Installing ca-certificates-0: 100% | 843.9 KiB/s | 2.4 MiB | 00m03s >>> Running post-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.fc42. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.fc42.noa [119/156] Installing krb5-libs-0:1.21.3 100% | 115.2 MiB/s | 2.3 MiB | 00m00s [120/156] Installing libarchive-0:3.7.7 100% | 130.3 MiB/s | 934.2 KiB | 00m00s [121/156] Installing libtirpc-0:1.3.6-0 100% | 99.3 MiB/s | 203.4 KiB | 00m00s [122/156] Installing gzip-0:1.13-2.fc41 100% | 77.1 MiB/s | 394.6 KiB | 00m00s [123/156] Installing authselect-libs-0: 100% | 62.9 MiB/s | 837.2 KiB | 00m00s [124/156] Installing cracklib-0:2.9.11- 100% | 24.4 MiB/s | 250.3 KiB | 00m00s [125/156] Installing libpwquality-0:1.4 100% | 42.0 MiB/s | 430.1 KiB | 00m00s [126/156] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [127/156] Installing pam-0:1.7.0-2.fc42 100% | 68.3 MiB/s | 1.7 MiB | 00m00s [128/156] Installing libssh-0:0.11.1-1. 100% | 139.6 MiB/s | 571.7 KiB | 00m00s [129/156] Installing rpm-sequoia-0:1.7. 100% | 295.9 MiB/s | 2.4 MiB | 00m00s [130/156] Installing rpm-libs-0:4.20.0- 100% | 177.7 MiB/s | 727.7 KiB | 00m00s [131/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [132/156] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [133/156] Installing libcurl-0:8.10.1-2 100% | 164.0 MiB/s | 839.5 KiB | 00m00s [134/156] Installing elfutils-libs-0:0. 100% | 163.1 MiB/s | 668.0 KiB | 00m00s [135/156] Installing elfutils-debuginfo 100% | 42.1 MiB/s | 86.3 KiB | 00m00s [136/156] Installing elfutils-0:0.192-5 100% | 243.2 MiB/s | 2.7 MiB | 00m00s [137/156] Installing binutils-0:2.43.50 100% | 217.5 MiB/s | 27.6 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.50-5.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.50-5.fc42.x86_64 [138/156] Installing gdb-minimal-0:15.2 100% | 178.0 MiB/s | 13.0 MiB | 00m00s [139/156] Installing debugedit-0:5.1-1. 100% | 95.4 MiB/s | 195.4 KiB | 00m00s [140/156] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [141/156] Installing curl-0:8.10.1-2.fc 100% | 17.8 MiB/s | 455.8 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.20.0-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.20.0-1.fc42.x86_64 [142/156] Installing rpm-0:4.20.0-1.fc4 100% | 61.1 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 19.7 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 60.9 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [154/156] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 105.1 KiB/s | 362.2 KiB | 00m03s >>> Running post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-2.fc42 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-8.fc42.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-8.fc42.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.20.0-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.20.0-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-16.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-16.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1.1-2.fc42.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1.1-2.fc42.x86_64 Warning: skipped PGP checks for 148 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-5.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-10.fc42.x86_64 coreutils-common-9.5-10.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241106-1.git35892de.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-1.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-5.fc41.x86_64 elfutils-debuginfod-client-0.192-5.fc41.x86_64 elfutils-default-yama-scope-0.192-5.fc41.noarch elfutils-libelf-0.192-5.fc41.x86_64 elfutils-libs-0.192-5.fc41.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.8.noarch fedora-release-common-42-0.8.noarch fedora-release-identity-basic-42-0.8.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-2.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-16.fc42.x86_64 glibc-common-2.40.9000-16.fc42.x86_64 glibc-gconv-extra-2.40.9000-16.fc42.x86_64 glibc-minimal-langpack-2.40.9000-16.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.7.4-3.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-4.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-0.rc1.fc42.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-10.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-9.fc41.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-2.fc42.x86_64 pam-libs-1.7.0-2.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.1-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.0-1.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-7.fc42.x86_64 sqlite-libs-3.46.1-1.fc42.x86_64 systemd-libs-257~rc1-2.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1731369600 Wrote: /builddir/build/SRPMS/morphio-3.4.0-1.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1731409032.722486/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rfb05s6s/morphio/morphio.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.4.0-1.fc42.src.rpm) Config(fedora-41-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1731409032.722486/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for morphio-3.4.0-1.fc42.src.rpm Start: build setup for morphio-3.4.0-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1731369600 Wrote: /builddir/build/SRPMS/morphio-3.4.0-1.fc42.src.rpm Updating and loading repositories: updates 100% | 997.4 KiB/s | 29.9 KiB | 00m00s fedora 100% | 892.2 KiB/s | 26.8 KiB | 00m00s Copr repository 100% | 43.9 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Failed to resolve the transaction: Problem: cannot install both hdf5-1.12.1-20.fc41.x86_64 and hdf5-1.14.5-1.fc42.x86_64 - package python3-h5py-3.12.1-3.fc42.x86_64 requires libhdf5.so.200()(64bit), but none of the providers can be installed - package python3-h5py-3.12.1-3.fc42.x86_64 requires libhdf5_hl.so.200()(64bit), but none of the providers can be installed - package python3-h5py-3.12.1-3.fc42.x86_64 requires hdf5(x86-64) = 1.12.1, but none of the providers can be installed - package hdf5-devel-1.14.5-1.fc42.x86_64 requires hdf5(x86-64) = 1.14.5-1.fc42, but none of the providers can be installed - cannot install the best candidate for the job You can try to add to command line: --no-best to not limit the transaction to the best candidates WARNING: DNF5 command failed, retrying, attempt #2, sleeping 10s Updating and loading repositories: updates 100% | 935.0 KiB/s | 29.9 KiB | 00m00s fedora 100% | 863.5 KiB/s | 26.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 72.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 45.2 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 952.8 KiB cmake x86_64 3.30.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.7 MiB gcc-c++ x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.1 MiB gsl-lite-devel x86_64 0.41.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB gulrak-filesystem-devel x86_64 1.5.14-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.2 KiB hdf5-devel x86_64 1.14.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.3 MiB highfive-devel x86_64 2.10.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 377.0 KiB lcov noarch 2.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 930.9 KiB 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zlib-ng-compat-devel x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.8 KiB Transaction Summary: Installing: 278 packages Total size of inbound packages is 192 MiB. Need to download 192 MiB. After this operation 788 MiB will be used (install 788 MiB, remove 0 B). [ 1/278] catch2-devel-0:2.13.10-5.fc41 100% | 2.3 MiB/s | 197.0 KiB | 00m00s [ 2/278] gulrak-filesystem-devel-0:1.5 100% | 2.9 MiB/s | 59.6 KiB | 00m00s [ 3/278] gsl-lite-devel-0:0.41.0-5.fc4 100% | 1.1 MiB/s | 61.5 KiB | 00m00s [ 4/278] highfive-devel-0:2.10.0-2.fc4 100% | 1.7 MiB/s | 85.6 KiB | 00m00s [ 5/278] cmake-0:3.30.5-1.fc42.x86_64 100% | 36.7 MiB/s | 10.9 MiB | 00m00s [ 6/278] pybind11-devel-0:2.13.6-1.fc4 100% | 2.0 MiB/s | 176.8 KiB | 00m00s [ 7/278] boost-devel-0:1.83.0-8.fc41.x 100% | 34.4 MiB/s | 11.7 MiB | 00m00s [ 8/278] hdf5-devel-0:1.14.5-1.fc42.x8 100% | 27.0 MiB/s | 1.4 MiB | 00m00s [ 9/278] lcov-0:2.0-4.fc41.noarch 100% | 10.4 MiB/s | 223.8 KiB | 00m00s [ 10/278] lexertl14-devel-1:0.1.0^20240 100% | 5.0 MiB/s | 97.0 KiB | 00m00s [ 11/278] ninja-build-0:1.12.1-3.fc41.x 100% | 9.8 MiB/s | 180.0 KiB | 00m00s [ 12/278] python3-devel-0:3.13.0-1.fc42 100% | 14.5 MiB/s | 357.2 KiB | 00m00s [ 13/278] python3-setuptools_scm-0:8.1. 100% | 5.2 MiB/s | 101.4 KiB | 00m00s [ 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perl-namespace-clean-0:0.27-2 100% | 1.2 MiB/s | 29.1 KiB | 00m00s [195/278] perl-Devel-StackTrace-1:2.05- 100% | 1.7 MiB/s | 30.6 KiB | 00m00s [196/278] perl-Eval-Closure-0:0.14-24.f 100% | 1.4 MiB/s | 23.8 KiB | 00m00s [197/278] perl-MRO-Compat-0:0.15-10.fc4 100% | 1.5 MiB/s | 25.4 KiB | 00m00s [198/278] perl-Module-Runtime-0:0.016-2 100% | 1.3 MiB/s | 23.1 KiB | 00m00s [199/278] perl-Ref-Util-0:0.204-21.fc41 100% | 1.4 MiB/s | 23.5 KiB | 00m00s [200/278] perl-Role-Tiny-0:2.002004-12. 100% | 1.7 MiB/s | 31.9 KiB | 00m00s [201/278] perl-XString-0:0.005-14.fc41. 100% | 1.1 MiB/s | 22.9 KiB | 00m00s [202/278] perl-Class-Method-Modifiers-0 100% | 2.2 MiB/s | 43.7 KiB | 00m00s [203/278] perl-Ref-Util-XS-0:0.117-24.f 100% | 1.3 MiB/s | 23.5 KiB | 00m00s [204/278] perl-Pod-Perldoc-0:3.28.01-51 100% | 4.4 MiB/s | 80.5 KiB | 00m00s [205/278] perl-podlators-1:6.0.2-2.fc41 100% | 6.4 MiB/s | 124.8 KiB | 00m00s [206/278] perl-IPC-Open3-0:1.22-512.fc4 100% | 1.3 MiB/s | 21.8 KiB | 00m00s [207/278] perl-HTTP-Tiny-0:0.088-512.fc 100% | 3.0 MiB/s | 55.8 KiB | 00m00s [208/278] groff-base-0:1.23.0-7.fc41.x8 100% | 24.9 MiB/s | 1.1 MiB | 00m00s [209/278] perl-Pod-Simple-1:3.45-511.fc 100% | 11.4 MiB/s | 209.6 KiB | 00m00s [210/278] perl-Exception-Class-0:1.45-1 100% | 2.5 MiB/s | 43.6 KiB | 00m00s [211/278] perl-IO-Socket-SSL-0:2.089-1. 100% | 9.8 MiB/s | 231.2 KiB | 00m00s [212/278] libicu-0:74.2-2.fc41.x86_64 100% | 19.7 MiB/s | 10.4 MiB | 00m01s [213/278] perl-Mozilla-CA-0:20240924-1. 100% | 659.7 KiB/s | 14.5 KiB | 00m00s [214/278] perl-Class-Data-Inheritable-0 100% | 752.5 KiB/s | 12.8 KiB | 00m00s [215/278] perl-Net-SSLeay-0:1.94-7.fc41 100% | 11.6 MiB/s | 357.6 KiB | 00m00s [216/278] perl-Devel-LexAlias-0:0.05-38 100% | 913.2 KiB/s | 16.4 KiB | 00m00s [217/278] perl-Devel-Caller-0:2.07-7.fc 100% | 1.0 MiB/s | 19.2 KiB | 00m00s [218/278] perl-PadWalker-0:2.5-15.fc41. 100% | 1.5 MiB/s | 27.2 KiB | 00m00s [219/278] perltidy-0:20240903-1.fc42.no 100% | 22.7 MiB/s | 789.7 KiB | 00m00s [220/278] perl-File-Compare-0:1.100.800 100% | 776.9 KiB/s | 13.2 KiB | 00m00s [221/278] perl-Class-Singleton-0:1.6-12 100% | 1.4 MiB/s | 25.5 KiB | 00m00s [222/278] perl-DateTime-TimeZone-Tzfile 100% | 1.1 MiB/s | 19.5 KiB | 00m00s [223/278] perl-Hash-Util-FieldHash-0:1. 100% | 2.2 MiB/s | 38.8 KiB | 00m00s [224/278] perl-File-ShareDir-0:1.118-12 100% | 1.7 MiB/s | 29.8 KiB | 00m00s [225/278] perl-Module-Implementation-0: 100% | 1.0 MiB/s | 19.1 KiB | 00m00s [226/278] perl-Sub-Exporter-Progressive 100% | 1.3 MiB/s | 21.0 KiB | 00m00s [227/278] perl-Variable-Magic-0:0.64-3. 100% | 3.2 MiB/s | 55.3 KiB | 00m00s [228/278] openblas-0:0.3.26-5.fc41.x86_ 100% | 2.1 MiB/s | 38.7 KiB | 00m00s [229/278] jbigkit-libs-0:2.1-30.fc41.x8 100% | 3.1 MiB/s | 53.3 KiB | 00m00s [230/278] liblerc-0:4.0.0-7.fc41.x86_64 100% | 8.2 MiB/s | 210.3 KiB | 00m00s [231/278] libdav1d-0:1.5.0-1.fc42.x86_6 100% | 19.0 MiB/s | 622.8 KiB | 00m00s [232/278] rav1e-libs-0:0.7.1-4.fc42.x86 100% | 17.3 MiB/s | 1.0 MiB | 00m00s [233/278] libaom-0:3.9.0-3.fc41.x86_64 100% | 26.2 MiB/s | 1.8 MiB | 00m00s [234/278] svt-av1-libs-0:2.1.0-2.fc41.x 100% | 30.8 MiB/s | 2.0 MiB | 00m00s [235/278] libvmaf-0:3.0.0-2.fc41.x86_64 100% | 5.9 MiB/s | 193.7 KiB | 00m00s [236/278] libxcb-0:1.17.0-3.fc42.x86_64 100% | 6.4 MiB/s | 235.9 KiB | 00m00s [237/278] graphite2-0:1.3.14-16.fc41.x8 100% | 3.9 MiB/s | 95.1 KiB | 00m00s [238/278] gnutls-0:3.8.8-1.fc42.x86_64 100% | 21.0 MiB/s | 1.1 MiB | 00m00s [239/278] nettle-0:3.10-3.fc41.x86_64 100% | 11.0 MiB/s | 428.5 KiB | 00m00s [240/278] perl-English-0:1.11-512.fc42. 100% | 752.4 KiB/s | 13.5 KiB | 00m00s [241/278] glib2-0:2.83.0-1.fc42.x86_64 100% | 34.1 MiB/s | 3.0 MiB | 00m00s [242/278] perl-Pod-Html-0:1.35-512.fc42 100% | 1.5 MiB/s | 29.4 KiB | 00m00s [243/278] perl-HTML-Parser-0:3.83-1.fc4 100% | 6.5 MiB/s | 119.1 KiB | 00m00s [244/278] perl-Term-ANSIColor-0:5.01-51 100% | 2.7 MiB/s | 47.7 KiB | 00m00s [245/278] perl-Term-Cap-0:1.18-511.fc41 100% | 1.2 MiB/s | 22.1 KiB | 00m00s [246/278] perl-Package-Stash-0:0.40-8.f 100% | 1.8 MiB/s | 32.6 KiB | 00m00s [247/278] perl-Sub-Exporter-0:0.991-4.f 100% | 3.7 MiB/s | 71.4 KiB | 00m00s [248/278] perl-Data-OptList-0:0.114-5.f 100% | 1.4 MiB/s | 26.9 KiB | 00m00s [249/278] ncurses-0:6.5-2.20240629.fc41 100% | 14.1 MiB/s | 419.1 KiB | 00m00s [250/278] perl-Package-Generator-0:1.10 100% | 1.4 MiB/s | 22.5 KiB | 00m00s [251/278] perl-Params-Util-0:1.102-16.f 100% | 1.9 MiB/s | 32.8 KiB | 00m00s [252/278] perl-Sub-Install-0:0.929-6.fc 100% | 1.2 MiB/s | 22.9 KiB | 00m00s [253/278] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.3 MiB/s | 21.9 KiB | 00m00s [254/278] perl-Pod-Escapes-1:1.07-511.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [255/278] perl-Package-Stash-XS-0:0.30- 100% | 2.0 MiB/s | 36.1 KiB | 00m00s [256/278] perl-IO-Socket-IP-0:0.42-512. 100% | 1.9 MiB/s | 41.8 KiB | 00m00s [257/278] perl-URI-0:5.31-1.fc42.noarch 100% | 5.9 MiB/s | 127.0 KiB | 00m00s [258/278] perl-HTML-Tagset-0:3.24-2.fc4 100% | 838.4 KiB/s | 18.4 KiB | 00m00s [259/278] perl-Class-Inspector-0:1.36-1 100% | 1.6 MiB/s | 30.4 KiB | 00m00s [260/278] perl-HTTP-Message-0:7.00-1.fc 100% | 4.5 MiB/s | 96.2 KiB | 00m00s [261/278] perl-Date-ISO8601-0:0.005-21. 100% | 1.0 MiB/s | 19.2 KiB | 00m00s [262/278] perl-DateTime-TimeZone-System 100% | 1.3 MiB/s | 22.5 KiB | 00m00s [263/278] perl-Params-Classify-0:0.015- 100% | 1.8 MiB/s | 30.7 KiB | 00m00s [264/278] libXau-0:1.0.11-7.fc41.x86_64 100% | 1.7 MiB/s | 31.9 KiB | 00m00s [265/278] perl-MIME-Base32-0:1.303-21.f 100% | 1.2 MiB/s | 20.5 KiB | 00m00s [266/278] perl-libnet-0:3.15-512.fc41.n 100% | 7.1 MiB/s | 123.0 KiB | 00m00s [267/278] perl-Devel-CallChecker-0:0.00 100% | 1.4 MiB/s | 23.9 KiB | 00m00s [268/278] perl-Clone-0:0.47-1.fc42.x86_ 100% | 1.2 MiB/s | 22.3 KiB | 00m00s [269/278] perl-Compress-Raw-Zlib-0:2.21 100% | 3.7 MiB/s | 65.3 KiB | 00m00s [270/278] perl-Encode-Locale-0:1.05-30. 100% | 1.1 MiB/s | 18.6 KiB | 00m00s [271/278] perl-HTTP-Date-0:6.06-5.fc41. 100% | 1.3 MiB/s | 24.4 KiB | 00m00s [272/278] perl-IO-Compress-0:2.213-1.fc 100% | 13.1 MiB/s | 294.5 KiB | 00m00s [273/278] perl-Compress-Raw-Bzip2-0:2.2 100% | 1.9 MiB/s | 36.2 KiB | 00m00s [274/278] perl-IO-HTML-0:1.004-13.fc41. 100% | 1.6 MiB/s | 27.6 KiB | 00m00s [275/278] perl-LWP-MediaTypes-0:6.04-19 100% | 1.9 MiB/s | 33.1 KiB | 00m00s [276/278] perl-I18N-Langinfo-0:0.24-512 100% | 1.3 MiB/s | 25.7 KiB | 00m00s [277/278] perl-DynaLoader-Functions-0:0 100% | 998.7 KiB/s | 19.0 KiB | 00m00s [278/278] mailcap-0:2.1.54-7.fc41.noarc 100% | 1.9 MiB/s | 34.4 KiB | 00m00s -------------------------------------------------------------------------------- [278/278] Total 100% | 47.1 MiB/s | 191.8 MiB | 00m04s Running transaction [ 1/280] Verify package files 100% | 427.0 B/s | 278.0 B | 00m01s [ 2/280] Prepare transaction 100% | 810.0 B/s | 278.0 B | 00m00s [ 3/280] Installing cmake-filesystem-0 100% | 2.4 MiB/s | 7.3 KiB | 00m00s [ 4/280] Installing boost-system-0:1.8 100% | 16.9 MiB/s | 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100% | 159.8 MiB/s | 327.2 KiB | 00m00s [ 18/280] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 19/280] Installing libpng-2:1.6.44-1. 100% | 120.6 MiB/s | 247.0 KiB | 00m00s [ 20/280] Installing libjpeg-turbo-0:3. 100% | 257.4 MiB/s | 790.8 KiB | 00m00s [ 21/280] Installing boost-date-time-0: 100% | 4.2 MiB/s | 17.3 KiB | 00m00s [ 22/280] Installing boost-container-0: 100% | 65.0 MiB/s | 66.6 KiB | 00m00s [ 23/280] Installing make-1:4.4.1-9.fc4 100% | 180.0 MiB/s | 1.8 MiB | 00m00s [ 24/280] Installing libaec-0:1.1.3-1.f 100% | 49.1 MiB/s | 100.5 KiB | 00m00s [ 25/280] Installing hdf5-0:1.14.5-1.fc 100% | 215.7 MiB/s | 7.1 MiB | 00m00s [ 26/280] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 27/280] Installing vim-filesystem-2:9 100% | 4.6 MiB/s | 4.7 KiB | 00m00s [ 28/280] Installing expat-0:2.6.4-1.fc 100% | 140.4 MiB/s | 287.6 KiB | 00m00s [ 29/280] Installing libaec-devel-0:1.1 100% | 13.2 MiB/s | 13.5 KiB | 00m00s [ 30/280] Installing boost-json-0:1.83. 100% | 53.7 MiB/s | 330.2 KiB | 00m00s [ 31/280] Installing boost-wave-0:1.83. 100% | 207.3 MiB/s | 636.8 KiB | 00m00s [ 32/280] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB | 00m00s [ 33/280] Installing boost-fiber-0:1.83 100% | 40.9 MiB/s | 83.8 KiB | 00m00s [ 34/280] Installing boost-log-0:1.83.0 100% | 163.9 MiB/s | 1.5 MiB | 00m00s [ 35/280] Installing boost-coroutine-0: 100% | 21.6 MiB/s | 22.2 KiB | 00m00s [ 36/280] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 37/280] Installing boost-graph-0:1.83 100% | 113.1 MiB/s | 347.4 KiB | 00m00s [ 38/280] Installing cpp-0:14.2.1-6.fc4 100% | 188.0 MiB/s | 35.0 MiB | 00m00s [ 39/280] Installing libicu-devel-0:74. 100% | 94.0 MiB/s | 5.6 MiB | 00m00s [ 40/280] Installing boost-locale-0:1.8 100% | 148.2 MiB/s | 607.2 KiB | 00m00s [ 41/280] Installing boost-type_erasure 100% | 11.6 MiB/s | 59.3 KiB | 00m00s [ 42/280] Installing boost-timer-0:1.83 100% | 25.5 MiB/s | 26.1 KiB | 00m00s [ 43/280] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 44/280] Installing mailcap-0:2.1.54-7 100% | 85.0 MiB/s | 87.1 KiB | 00m00s [ 45/280] Installing libXau-0:1.0.11-7. 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [ 46/280] Installing libxcb-0:1.17.0-3. 100% | 79.2 MiB/s | 1.2 MiB | 00m00s [ 47/280] Installing ncurses-0:6.5-2.20 100% | 103.2 MiB/s | 633.9 KiB | 00m00s [ 48/280] Installing nettle-0:3.10-3.fc 100% | 97.2 MiB/s | 796.1 KiB | 00m00s [ 49/280] Installing gnutls-0:3.8.8-1.f 100% | 162.4 MiB/s | 3.2 MiB | 00m00s [ 50/280] Installing glib2-0:2.83.0-1.f 100% | 113.1 MiB/s | 14.7 MiB | 00m00s [ 51/280] Installing graphite2-0:1.3.14 100% | 27.1 MiB/s | 194.1 KiB | 00m00s [ 52/280] Installing harfbuzz-0:10.1.0- 100% | 141.7 MiB/s | 2.7 MiB | 00m00s [ 53/280] Installing freetype-0:2.13.3- 100% | 83.2 MiB/s | 852.2 KiB | 00m00s [ 54/280] Installing libvmaf-0:3.0.0-2. 100% | 161.0 MiB/s | 824.4 KiB | 00m00s [ 55/280] Installing libaom-0:3.9.0-3.f 100% | 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38.1 MiB | 00m00s [264/280] Installing python3-h5py-0:3.1 100% | 164.3 MiB/s | 4.4 MiB | 00m00s [265/280] Installing python3-pytest-0:8 100% | 183.8 MiB/s | 21.0 MiB | 00m00s [266/280] Installing python3-requests-0 100% | 97.3 MiB/s | 497.9 KiB | 00m00s [267/280] Installing python3-setuptools 100% | 47.4 MiB/s | 339.7 KiB | 00m00s [268/280] Installing python3-devel-0:3. 100% | 33.6 MiB/s | 1.8 MiB | 00m00s [269/280] Installing boost-devel-0:1.83 100% | 94.8 MiB/s | 145.8 MiB | 00m02s [270/280] Installing pybind11-devel-0:2 100% | 139.3 MiB/s | 856.0 KiB | 00m00s [271/280] Installing lcov-0:2.0-4.fc41. 100% | 228.2 MiB/s | 934.6 KiB | 00m00s [272/280] Installing ninja-build-0:1.12 100% | 106.4 MiB/s | 435.8 KiB | 00m00s [273/280] Installing hdf5-devel-0:1.14. 100% | 164.5 MiB/s | 3.3 MiB | 00m00s [274/280] Installing gcc-plugin-annobin 100% | 2.0 MiB/s | 59.2 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:296-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:296-1.fc42.noarch [275/280] Installing annobin-plugin-gcc 100% | 26.8 MiB/s | 987.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:296-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:296-1.fc42.noarch [276/280] Installing catch2-devel-0:2.1 100% | 134.0 MiB/s | 960.8 KiB | 00m00s [277/280] Installing gulrak-filesystem- 100% | 134.4 MiB/s | 275.2 KiB | 00m00s [278/280] Installing gsl-lite-devel-0:0 100% | 151.4 MiB/s | 310.1 KiB | 00m00s [279/280] Installing highfive-devel-0:2 100% | 20.0 MiB/s | 389.5 KiB | 00m00s [280/280] Installing lexertl14-devel-1: 100% | 1.5 MiB/s | 585.5 KiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-16.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-16.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1.1-2.fc42.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1.1-2.fc42.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.83.0-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.83.0-1.fc42.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Warning: skipped PGP checks for 278 package(s). Finish: build setup for morphio-3.4.0-1.fc42.src.rpm Start: rpmbuild morphio-3.4.0-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1731369600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.8GSzNa + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ndc4Vf + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd /builddir/build/BUILD/morphio-3.4.0-build + rm -rf MorphIO-3.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-setup.py-from-cmake-build.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Uq4zMi + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTERNAL_PYBIND11:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DBUILD_BINDINGS:BOOL=TRUE -DMorphIO_CXX_WARNINGS:BOOL=FALSE -DMORPHIO_TESTS:BOOL=TRUE -DEXTERNAL_CATCH2:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.4.0 -GNinja -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:85 (include) -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:43 (include) -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [1/64] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/dendritic_spine.cpp [2/64] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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binds/python/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lgcov -lhdf5 && cd /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/binds/python/_morphio.cpython-313-x86_64-linux-gnu.so [64/64] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_collection.cpp.o tests/CMakeFiles/unittests.dir/test_enums.cpp.o tests/CMakeFiles/unittests.dir/test_immutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_mitochondria.cpp.o tests/CMakeFiles/unittests.dir/test_morphology_readers.cpp.o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o tests/CMakeFiles/unittests.dir/test_properties.cpp.o tests/CMakeFiles/unittests.dir/test_soma.cpp.o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests src/libmorphio_static.a -lstdc++fs -lhdf5 -lgcov && : + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' /usr/lib/python3.13/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running build running build_py creating build creating build/lib creating build/lib/morphio copying morphio/__init__.py -> build/lib/morphio creating build/lib/morphio/mut copying morphio/mut/__init__.py -> build/lib/morphio/mut creating build/lib/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib/morphio/vasculature + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3sdcRE + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + mkdir /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + DESTDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/_morphio.cpython-313-x86_64-linux-gnu.so + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --prefix /usr /usr/lib/python3.13/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio copying build/lib/morphio/__init__.py -> /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut copying build/lib/morphio/mut/__init__.py -> /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut creating /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature copying build/lib/morphio/vasculature/__init__.py -> /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature byte-compiling /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmp5evsttm9.py' /usr/bin/python3 /tmp/tmp5evsttm9.py removing /tmp/tmp5evsttm9.py running install_egg_info running egg_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' no previously-included directories found matching 'examples' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.4.0-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin/__pycache__ + '[' /usr/lib/python3.13/site-packages '!=' /usr/lib64/python3.13/site-packages ']' + mv -v /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__ /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio renamed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py' -> '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__init__.py' renamed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__' -> '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__' renamed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut' -> '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut' renamed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature' -> '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature' + mv -v /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.4.0-py3.13.egg-info /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/ renamed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.4.0-py3.13.egg-info' -> '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0-py3.13.egg-info' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.4.0-1.fc42 --unique-debug-suffix -3.4.0-1.fc42.x86_64 --unique-debug-src-base morphio-3.4.0-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.4.0-1.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 37 directories and 136 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.F4iIwd + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests 1: Working Directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests 1: Test timeout computed to be: 10000000 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:4:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:0:warning 1: Warning: no soma found in file 1: 1: $STRING$:3:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:4:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:5:warning 1: Warning: Type changed within section, without bifurcation 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: 1: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1: unittests is a Catch v2.13.10 host application. 1: Run with -? for options 1: 1: ------------------------------------------------------------------------------- 1: LoadSWCMorphologyLocale 1: ------------------------------------------------------------------------------- 1: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_morphology_readers.cpp:213 1: ............................................................................... 1: 1: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_morphology_readers.cpp:213: FAILED: 1: due to unexpected exception with message: 1: locale::facet::_S_create_c_locale name not valid 1: 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: test cases: 60 | 59 passed | 1 failed 1: assertions: 470 | 469 passed | 1 failed 1: 1/1 Test #1: unittests ........................***Failed 0.07 sec $STRING$:2:warning Warning: found a disconnected neurite. Neurites are not supposed to have parentId: -1 (although this is normal if this neuron has no soma) $STRING$:2:warning Warning: found a disconnected neurite. Neurites are not supposed to have parentId: -1 (although this is normal if this neuron has no soma) $STRING$:2:warning Warning: found a disconnected neurite. Neurites are not supposed to have parentId: -1 (although this is normal if this neuron has no soma) $STRING$:2:warning Warning: found a disconnected neurite. Neurites are not supposed to have parentId: -1 (although this is normal if this neuron has no soma) $STRING$:4:warning Warning: found a disconnected neurite. Neurites are not supposed to have parentId: -1 (although this is normal if this neuron has no soma) $STRING$:0:warning Warning: no soma found in file $STRING$:3:warning Warning: Type changed within section, without bifurcation $STRING$:4:warning Warning: Type changed within section, without bifurcation $STRING$:5:warning Warning: Type changed within section, without bifurcation data/single_point_root.asc:0:warning Warning: no soma found in file Warning: section 1 is the only child of section: 0 It will be merged with the parent section Warning: section 2 is the only child of section: 0 It will be merged with the parent section Warning: section 3 is the only child of section: 0 It will be merged with the parent section Warning: Skipping an attempt to write an empty morphology. Warning: writing file without a soma Warning: writing soma set to SOMA_UNDEFINED Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 Three Point Soma: Only one column has the same coordinates. data/h5/v1/Neuron-no-soma.h5:0:warning Warning: no soma found in file data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file data/h5/v1/single-neurite.h5:0:warning Warning: no soma found in file ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unittests is a Catch v2.13.10 host application. Run with -? for options ------------------------------------------------------------------------------- LoadSWCMorphologyLocale ------------------------------------------------------------------------------- /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_morphology_readers.cpp:213 ............................................................................... /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_morphology_readers.cpp:213: FAILED: due to unexpected exception with message: locale::facet::_S_create_c_locale name not valid data/markers.asc:0:warning Warning: no soma found in file data/annotations.asc:0:warning Warning: no soma found in file Warning: section 1 is the only child of section: 0 It will be merged with the parent section data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file HDF5 GROUP:0:warning Warning: no soma found in file data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file Warning: while appending section: 2 to parent: 1 The section first point should be parent section last point: : X Y Z Diameter parent last point :[0.000000, 15.900000, 0.000000, 2.400000] child first point :[0.000000, 13.200000, 0.000000, 2.300000] data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file Warning: while appending section: 2 to parent: 1 The section first point should be parent section last point: : X Y Z Diameter parent last point :[0.000000, 15.900000, 0.000000, 2.400000] child first point :[0.000000, 13.200000, 0.000000, 2.300000] data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file Warning: while appending section: 2 to parent: 1 The section first point should be parent section last point: : X Y Z Diameter parent last point :[0.000000, 15.900000, 0.000000, 2.400000] child first point :[0.000000, 13.200000, 0.000000, 2.300000] HDF5 GROUP:0:warning Warning: no soma found in file Warning: while appending section: 2 to parent: 1 The section first point should be parent section last point: : X Y Z Diameter parent last point :[0.000000, 15.900000, 0.000000, 2.400000] child first point :[0.000000, 13.200000, 0.000000, 2.300000] data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file data/h5/v1/simple-dendritric-spine.h5:0:warning Warning: no soma found in file HDF5 GROUP:0:warning Warning: no soma found in file HDF5 GROUP:0:warning Warning: no soma found in file =============================================================================== test cases: 60 | 59 passed | 1 failed assertions: 470 | 469 passed | 1 failed 0% tests passed, 1 tests failed out of 1 Total Test time (real) = 0.07 sec The following tests FAILED: 1 - unittests (Failed) Errors while running CTest RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.F4iIwd (%check) Bad exit status from /var/tmp/rpm-tmp.F4iIwd (%check) Finish: rpmbuild morphio-3.4.0-1.fc42.src.rpm Finish: build phase for morphio-3.4.0-1.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1731409032.722486/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/morphio-3.4.0-1.fc42.src.rpm) Config(fedora-41-x86_64) 4 minutes 3 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 207f7724798b4e9fa136e8680d91d435 -D /var/lib/mock/fedora-41-x86_64-1731409032.722486/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.8rxwga91:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/originals/morphio.spec' Copr build error: Build failed