Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d4' (ED25519) to the list of known hosts. cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pysb-1.16.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pysb-1.16.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python3.13/python-pysb/pysb-1.16.0.tar.gz/md5/2eb2b5a8007f4df7b93aabeeaa83e10f/pysb-1.16.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 376k 100 376k 0 0 3865k 0 --:--:-- --:--:-- --:--:-- 3881k INFO: Reading stdout from command: md5sum pysb-1.16.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb/python-pysb.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725491636.828406 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb/python-pysb.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725491636.828406 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb/python-pysb.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725491636.828406/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 147.7 KiB/s | 5.9 KiB | 00m00s Copr repository 100% | 39.5 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 64.9 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 44.2 MiB/s | 10.8 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 95.7 KiB coreutils x86_64 9.5-9.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 MiB diffutils x86_64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.6 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB gawk x86_64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B grep x86_64 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.0 MiB gzip x86_64 1.13-2.fc41 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http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 copr_base 417.8 KiB libselinux x86_64 3.7-5.fc41 copr_base 181.0 KiB libsemanage x86_64 3.7-2.fc41 copr_base 293.5 KiB libsepol x86_64 3.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 817.8 KiB libsmartcols x86_64 2.40.2-8.fc42 copr_base 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-1.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 175.7 KiB libtirpc x86_64 1.3.5-0.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 66.2 KiB libunistring 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http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB pam-libs x86_64 1.6.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.93-1.fc42 copr_base 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 copr_base 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 copr_base 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. 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Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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| 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 11/155] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.5 KiB | 00m00s [ 12/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 13/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 14/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 15/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 16/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 17/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 18/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 19/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 20/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 21/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 22/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 23/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 24/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 25/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 26/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 27/155] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 28/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 29/155] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 30/155] Installing glibc-0:2.40-3.fc4 100% | 117.1 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 31/155] Installing bash-0:5.2.32-2.fc 100% | 263.5 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 [ 32/155] Installing glibc-common-0:2.4 100% | 130.9 MiB/s | 1.0 MiB | 00m00s [ 33/155] Installing glibc-gconv-extra- 100% | 130.6 MiB/s | 8.1 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64 [ 34/155] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB | 00m00s [ 35/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 36/155] Installing bzip2-libs-0:1.0.8 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [ 37/155] Installing libuuid-0:2.40.2-8 100% | 41.5 MiB/s | 42.5 KiB | 00m00s [ 38/155] Installing readline-0:8.2-11. 100% | 161.2 MiB/s | 495.3 KiB | 00m00s [ 39/155] Installing popt-0:1.19-7.fc41 100% | 35.0 MiB/s | 143.5 KiB | 00m00s [ 40/155] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB | 00m00s [ 41/155] Installing libstdc++-0:14.2.1 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patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [110/155] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [111/155] Installing shadow-utils-2:4.1 100% | 127.1 MiB/s | 4.2 MiB | 00m00s [112/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [113/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [114/155] Installing coreutils-common-0 100% | 238.1 MiB/s | 11.2 MiB | 00m00s [115/155] Installing openssl-libs-1:3.2 100% | 301.0 MiB/s | 7.8 MiB | 00m00s [116/155] Installing coreutils-0:9.5-9. 100% | 124.3 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [117/155] Installing ca-certificates-0: 100% | 2.5 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: 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[130/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [131/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [132/155] Installing libcurl-0:8.9.1-3. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [133/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [134/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [135/155] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s | 2.6 MiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 281.0 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [137/155] Installing gdb-minimal-0:15.1 100% | 316.9 MiB/s | 13.0 MiB | 00m00s [138/155] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [139/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 37.1 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 89.3 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 82.6 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 283.2 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Warning: skipped PGP checks for 125 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 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libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-5.fc41.x86_64 pam-libs-1.6.1-5.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.14-3.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/python-pysb-1.16.0-8.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1725491636.828406/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725491636.828406/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ou1v_sxz/python-pysb/python-pysb.spec) Config(child) 0 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pysb-1.16.0-8.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725491636.828406/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for python-pysb-1.16.0-8.fc42.src.rpm Start: build setup for python-pysb-1.16.0-8.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/python-pysb-1.16.0-8.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 73.7 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 33.5 KiB/s | 1.5 KiB | 00m00s fedora 100% | 211.0 KiB/s | 5.9 KiB | 00m00s Repositories loaded. 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00m00s [231/621] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [232/621] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [233/621] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [234/621] Installing texlive-hycolor-11 100% | 201.7 MiB/s | 413.1 KiB | 00m00s [235/621] Installing texlive-intcalc-11 100% | 461.7 MiB/s | 472.8 KiB | 00m00s [236/621] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [237/621] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [238/621] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [239/621] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [240/621] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB | 00m00s [241/621] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [242/621] Installing texlive-footmisc-1 100% | 32.0 MiB/s | 65.6 KiB | 00m00s [243/621] Installing texlive-lm-11:svn6 100% | 329.5 MiB/s | 39.5 MiB | 00m00s [244/621] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [245/621] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB | 00m00s [246/621] Installing texlive-subfig-11: 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [247/621] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [248/621] Installing texlive-translator 100% | 84.6 MiB/s | 519.8 KiB | 00m00s [249/621] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [250/621] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [251/621] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB | 00m00s [252/621] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [253/621] Installing texlive-ifplatform 100% | 0.0 B/s | 13.5 KiB | 00m00s [254/621] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB | 00m00s [255/621] Installing texlive-babelbib-1 100% | 192.2 MiB/s | 787.2 KiB | 00m00s [256/621] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [257/621] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [258/621] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [259/621] Installing texlive-fancybox-1 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [260/621] Installing texlive-float-11:s 100% | 15.8 MiB/s | 16.2 KiB | 00m00s [261/621] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [262/621] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [263/621] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB | 00m00s [264/621] Installing texlive-ucharcat-1 100% | 10.7 MiB/s | 10.9 KiB | 00m00s [265/621] Installing texlive-underscore 100% | 0.0 B/s | 20.1 KiB | 00m00s [266/621] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [267/621] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [268/621] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [269/621] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [270/621] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [271/621] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [272/621] Installing texlive-latexconfi 100% | 9.6 MiB/s | 9.8 KiB | 00m00s [273/621] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [274/621] Installing texlive-stringenc- 100% | 263.5 MiB/s | 1.1 MiB | 00m00s [275/621] Installing texlive-glyphlist- 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [276/621] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [277/621] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB | 00m00s [278/621] Installing texlive-palatino-1 100% | 93.4 MiB/s | 1.1 MiB | 00m00s [279/621] Installing texlive-zapfding-1 100% | 40.4 MiB/s | 82.7 KiB | 00m00s [280/621] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB | 00m00s [281/621] Installing texlive-marvosym-1 100% | 61.3 MiB/s | 188.3 KiB | 00m00s [282/621] Installing texlive-paralist-1 100% | 0.0 B/s | 24.1 KiB | 00m00s [283/621] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [284/621] Installing texlive-auto-pst-p 100% | 0.0 B/s | 15.6 KiB | 00m00s [285/621] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [286/621] Installing texlive-fancyref-1 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [287/621] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [288/621] Installing texlive-ltabptch-1 100% | 0.0 B/s | 21.6 KiB | 00m00s [289/621] Installing texlive-crop-11:sv 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [290/621] Installing texlive-microtype- 100% | 227.3 MiB/s | 465.6 KiB | 00m00s [291/621] Installing texlive-pdfmanagem 100% | 502.7 MiB/s | 11.6 MiB | 00m00s [292/621] Installing texlive-psfrag-11: 100% | 0.0 B/s | 13.0 KiB | 00m00s [293/621] Installing texlive-logreq-11: 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [294/621] Installing texlive-dvips-11:s 100% | 158.2 MiB/s | 1.6 MiB | 00m00s [295/621] Installing texlive-hopatch-11 100% | 339.1 MiB/s | 347.2 KiB | 00m00s [296/621] Installing texlive-anysize-11 100% | 0.0 B/s | 4.1 KiB | 00m00s [297/621] Installing texlive-cite-11:sv 100% | 61.7 MiB/s | 63.2 KiB | 00m00s [298/621] Installing texlive-cmap-11:sv 100% | 37.9 MiB/s | 38.8 KiB | 00m00s [299/621] Installing texlive-everysel-1 100% | 448.6 MiB/s | 459.4 KiB | 00m00s [300/621] Installing texlive-footnotehy 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [301/621] Installing texlive-latexbug-1 100% | 138.6 MiB/s | 283.8 KiB | 00m00s [302/621] Installing texlive-lwarp-11:s 100% | 163.9 MiB/s | 4.9 MiB | 00m00s [303/621] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [304/621] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB | 00m00s [305/621] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB | 00m00s [306/621] Installing texlive-parskip-11 100% | 0.0 B/s | 16.7 KiB | 00m00s [307/621] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB | 00m00s [308/621] Installing texlive-rcs-11:svn 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [309/621] Installing texlive-sansmath-1 100% | 0.0 B/s | 9.3 KiB | 00m00s [310/621] Installing texlive-section-11 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [311/621] Installing texlive-sepnum-11: 100% | 0.0 B/s | 15.8 KiB | 00m00s [312/621] Installing texlive-textcase-1 100% | 0.0 B/s | 12.0 KiB | 00m00s [313/621] Installing texlive-babel-engl 100% | 45.4 MiB/s | 46.5 KiB | 00m00s [314/621] Installing texlive-fix2col-11 100% | 0.0 B/s | 17.4 KiB | 00m00s [315/621] Installing texlive-latex-lab- 100% | 385.1 MiB/s | 2.3 MiB | 00m00s [316/621] Installing texlive-mfnfss-11: 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [317/621] Installing texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [318/621] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [319/621] Installing texlive-pslatex-11 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [320/621] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [321/621] Installing texlive-bibtex-11: 100% | 192.1 MiB/s | 787.0 KiB | 00m00s [322/621] Installing texlive-colorprofi 100% | 89.2 MiB/s | 274.1 KiB | 00m00s [323/621] Installing texlive-ec-11:svn2 100% | 54.4 MiB/s | 2.7 MiB | 00m00s [324/621] Installing texlive-enctex-11: 100% | 61.0 MiB/s | 187.3 KiB | 00m00s [325/621] Installing texlive-hyphenex-1 100% | 0.0 B/s | 26.1 KiB | 00m00s [326/621] Installing texlive-knuth-loca 100% | 36.8 MiB/s | 113.1 KiB | 00m00s [327/621] Installing texlive-luahbtex-1 100% | 316.9 MiB/s | 6.3 MiB | 00m00s [328/621] Installing texlive-makeindex- 100% | 125.0 MiB/s | 511.9 KiB | 00m00s [329/621] Installing texlive-mflogo-11: 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [330/621] Installing texlive-mfware-11: 100% | 70.8 MiB/s | 217.4 KiB | 00m00s [331/621] Installing texlive-tex-11:svn 100% | 127.2 MiB/s | 390.8 KiB | 00m00s [332/621] Installing texlive-texlive-en 100% | 424.1 MiB/s | 5.9 MiB | 00m00s [333/621] Installing texlive-texlive-ms 100% | 351.6 MiB/s | 1.4 MiB | 00m00s [334/621] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [335/621] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [336/621] Installing texlive-eso-pic-11 100% | 0.0 B/s | 28.6 KiB | 00m00s [337/621] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [338/621] Installing texlive-avantgar-1 100% | 112.9 MiB/s | 1.2 MiB | 00m00s [339/621] Installing texlive-bookman-11 100% | 102.8 MiB/s | 1.2 MiB | 00m00s [340/621] Installing texlive-charter-11 100% | 101.3 MiB/s | 415.0 KiB | 00m00s [341/621] Installing texlive-courier-11 100% | 101.7 MiB/s | 937.1 KiB | 00m00s [342/621] Installing texlive-helvetic-1 100% | 114.3 MiB/s | 1.8 MiB | 00m00s [343/621] Installing texlive-symbol-11: 100% | 26.7 MiB/s | 82.0 KiB | 00m00s [344/621] Installing texlive-times-11:s 100% | 90.7 MiB/s | 1.0 MiB | 00m00s [345/621] Installing texlive-utopia-11: 100% | 134.6 MiB/s | 551.4 KiB | 00m00s [346/621] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [347/621] Installing texlive-makecmds-1 100% | 0.0 B/s | 11.9 KiB | 00m00s [348/621] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [349/621] Installing texlive-parallel-1 100% | 0.0 B/s | 23.3 KiB | 00m00s [350/621] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB | 00m00s [351/621] Installing texlive-fpl-11:svn 100% | 212.0 MiB/s | 651.2 KiB | 00m00s [352/621] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [353/621] Installing texlive-psnfss-11: 100% | 19.4 MiB/s | 119.5 KiB | 00m00s [354/621] Installing texlive-ctablestac 100% | 0.0 B/s | 20.9 KiB | 00m00s [355/621] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [356/621] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [357/621] Installing texlive-lualibs-11 100% | 188.4 MiB/s | 771.6 KiB | 00m00s [358/621] Installing texlive-luaotfload 100% | 373.6 MiB/s | 8.2 MiB | 00m00s [359/621] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [360/621] Installing texlive-finstrut-1 100% | 25.7 MiB/s | 26.4 KiB | 00m00s [361/621] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [362/621] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [363/621] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [364/621] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [365/621] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [366/621] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [367/621] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [368/621] Installing texlive-hobsub-11: 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [369/621] Installing texlive-hyperref-1 100% | 187.8 MiB/s | 769.4 KiB | 00m00s [370/621] Installing texlive-attachfile 100% | 241.6 MiB/s | 494.8 KiB | 00m00s [371/621] Installing texlive-attachfile 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [372/621] Installing texlive-kastrup-11 100% | 0.0 B/s | 4.2 KiB | 00m00s [373/621] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB | 00m00s [374/621] Installing texlive-ctable-11: 100% | 20.9 MiB/s | 21.4 KiB | 00m00s [375/621] Installing texlive-changepage 100% | 27.6 MiB/s | 28.2 KiB | 00m00s [376/621] Installing texlive-titlesec-1 100% | 96.6 MiB/s | 98.9 KiB | 00m00s [377/621] Installing texlive-ifmtarg-11 100% | 0.0 B/s | 9.9 KiB | 00m00s [378/621] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [379/621] Installing texlive-varwidth-1 100% | 19.8 MiB/s | 20.3 KiB | 00m00s [380/621] Installing texlive-fileconten 100% | 0.0 B/s | 13.0 KiB | 00m00s [381/621] Installing texlive-pst-math-1 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [382/621] Installing texlive-notoccite- 100% | 0.0 B/s | 3.0 KiB | 00m00s [383/621] Installing texlive-xstring-11 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [384/621] Installing perl-XML-SAX-0:1.0 100% | 1.8 MiB/s | 126.0 KiB | 00m00s >>> Running post-install scriptlet: perl-XML-SAX-0:1.02-17.fc41.noarch >>> Stop post-install scriptlet: perl-XML-SAX-0:1.02-17.fc41.noarch [385/621] Installing perl-XML-LibXML-1: 100% | 7.6 MiB/s | 931.5 KiB | 00m00s >>> Running trigger-install scriptlet: perl-XML-LibXML-1:2.0210-3.fc41.x86_64 >>> Stop trigger-install scriptlet: perl-XML-LibXML-1:2.0210-3.fc41.x86_64 [386/621] Installing perl-XML-LibXML-Si 100% | 51.1 MiB/s | 52.3 KiB | 00m00s [387/621] Installing perl-Business-ISSN 100% | 21.6 MiB/s | 22.1 KiB | 00m00s [388/621] Installing perl-Class-Accesso 100% | 41.9 MiB/s | 42.9 KiB | 00m00s [389/621] Installing perl-File-Slurper- 100% | 29.3 MiB/s | 30.0 KiB | 00m00s [390/621] Installing perl-IO-String-0:1 100% | 17.4 MiB/s | 17.8 KiB | 00m00s [391/621] Installing perl-IPC-Run3-0:0. 100% | 30.9 MiB/s | 63.3 KiB | 00m00s [392/621] Installing perl-Regexp-Common 100% | 77.1 MiB/s | 473.9 KiB | 00m00s [393/621] Installing 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Installing texlive-anyfontsiz 100% | 13.1 MiB/s | 13.4 KiB | 00m00s [620/621] Installing perl-macros-4:5.40 100% | 0.0 B/s | 5.8 KiB | 00m00s [621/621] Installing make-1:4.4.1-8.fc4 100% | 37.1 KiB/s | 1.8 MiB | 00m50s >>> Running post-transaction scriptlet: texlive-base-11:20230311-85.fc41.x86_64 >>> Stop post-transaction scriptlet: texlive-base-11:20230311-85.fc41.x86_64 >>> Running post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-23.f >>> Stop post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-23.fc41 >>> Running post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41 >>> Stop post-transaction scriptlet: urw-base35-c059-fonts-0:20200910-23.fc41.no >>> Running post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-23. >>> Stop post-transaction scriptlet: urw-base35-d050000l-fonts-0:20200910-23.fc4 >>> Running post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-23.fc >>> Stop post-transaction scriptlet: 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Finish: build setup for python-pysb-1.16.0-8.fc42.src.rpm Start: rpmbuild python-pysb-1.16.0-8.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.BUzIJM + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + test -d /builddir/build/BUILD/python-pysb-1.16.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pysb-1.16.0-build + /usr/bin/rm -rf /builddir/build/BUILD/python-pysb-1.16.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Qw72Om + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + cd /builddir/build/BUILD/python-pysb-1.16.0-build + rm -rf pysb-1.16.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysb-1.16.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pysb-1.16.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i -e 's|/usr/local/share/BioNetGen|/usr/share/perl5/vendor_perl/BioNetGen|' -e 's|'\''c:/Program Files/BioNetGen'\'',||' pysb/bng.py + sed -i -s '1 s|/usr/bin/env python|/usr/bin/python3|' pysb/examples/__init__.py pysb/examples/bax_pore.py pysb/examples/bax_pore_sequential.py pysb/examples/bngwiki_egfr_simple.py pysb/examples/bngwiki_enzymatic_cycle_mm.py pysb/examples/bngwiki_simple.py pysb/examples/earm_1_0.py pysb/examples/earm_1_3.py pysb/examples/explicit.py pysb/examples/expression_observables.py pysb/examples/fixed_initial.py pysb/examples/fricker_2010_apoptosis.py pysb/examples/hello_pysb.py pysb/examples/kinase_cascade.py pysb/examples/localfunc.py pysb/examples/michment.py pysb/examples/move_connected.py pysb/examples/robertson.py pysb/examples/run_bax_pore.py pysb/examples/run_bax_pore_sequential.py pysb/examples/run_bng_ssa_example.py pysb/examples/run_earm_1_0.py pysb/examples/run_earm_hpp.py pysb/examples/run_earm_stochkit.py pysb/examples/run_fixed_initial.py pysb/examples/run_kinase_cascade.py pysb/examples/run_michment.py pysb/examples/run_robertson.py pysb/examples/run_tutorial_a.py pysb/examples/run_tyson_oscillator.py pysb/examples/run_tyson_oscillator_stochkit.py pysb/examples/schloegl.py pysb/examples/synth_deg.py pysb/examples/tutorial_a.py pysb/examples/tutorial_b.py pysb/examples/tutorial_c.py pysb/examples/tyson_oscillator.py pysb/tools/__init__.py pysb/tools/render_reactions.py pysb/tools/render_species.py pysb/tools/sensitivity_analysis.py pysb/tools/species_graph.py + sed -r -i 's/'\''(sympy>=1.6),<1.12'\''/'\''\1'\''/; /'\''pynose'\''/d' setup.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3YCbSc + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysb-1.16.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib creating build/lib/pysb copying pysb/__init__.py -> build/lib/pysb copying pysb/_version.py -> build/lib/pysb copying pysb/anneal_mod.py -> build/lib/pysb copying pysb/annotation.py -> build/lib/pysb copying pysb/builder.py -> build/lib/pysb copying pysb/core.py -> build/lib/pysb copying pysb/integrate.py -> build/lib/pysb copying pysb/jacobian.py -> build/lib/pysb copying pysb/kappa.py -> build/lib/pysb copying pysb/logging.py -> build/lib/pysb copying pysb/macros.py -> build/lib/pysb copying pysb/pathfinder.py -> build/lib/pysb copying pysb/pattern.py -> build/lib/pysb copying pysb/util.py -> build/lib/pysb copying pysb/bng.py -> build/lib/pysb creating build/lib/pysb/generator copying pysb/generator/__init__.py -> build/lib/pysb/generator copying pysb/generator/bng.py -> build/lib/pysb/generator copying pysb/generator/kappa.py -> build/lib/pysb/generator creating build/lib/pysb/importers copying pysb/importers/__init__.py -> build/lib/pysb/importers copying pysb/importers/bngl.py -> build/lib/pysb/importers copying pysb/importers/json.py -> build/lib/pysb/importers copying pysb/importers/sbml.py -> build/lib/pysb/importers creating build/lib/pysb/tools copying pysb/tools/__init__.py -> build/lib/pysb/tools copying pysb/tools/render_reactions.py -> build/lib/pysb/tools copying pysb/tools/render_species.py -> build/lib/pysb/tools copying pysb/tools/sensitivity_analysis.py -> build/lib/pysb/tools copying pysb/tools/species_graph.py -> build/lib/pysb/tools creating build/lib/pysb/examples copying pysb/examples/__init__.py -> build/lib/pysb/examples copying pysb/examples/bax_pore.py -> build/lib/pysb/examples copying pysb/examples/bax_pore_sequential.py -> build/lib/pysb/examples copying pysb/examples/bngwiki_egfr_simple.py -> build/lib/pysb/examples copying pysb/examples/bngwiki_enzymatic_cycle_mm.py -> build/lib/pysb/examples copying pysb/examples/bngwiki_simple.py -> build/lib/pysb/examples copying pysb/examples/earm_1_0.py -> build/lib/pysb/examples copying pysb/examples/earm_1_3.py -> build/lib/pysb/examples copying pysb/examples/explicit.py -> build/lib/pysb/examples copying pysb/examples/expression_observables.py -> build/lib/pysb/examples copying pysb/examples/fixed_initial.py -> build/lib/pysb/examples copying pysb/examples/fricker_2010_apoptosis.py -> build/lib/pysb/examples copying pysb/examples/hello_pysb.py -> build/lib/pysb/examples copying pysb/examples/kinase_cascade.py -> build/lib/pysb/examples copying pysb/examples/localfunc.py -> build/lib/pysb/examples copying pysb/examples/michment.py -> build/lib/pysb/examples copying pysb/examples/move_connected.py -> build/lib/pysb/examples copying pysb/examples/robertson.py -> build/lib/pysb/examples copying pysb/examples/run_bax_pore.py -> build/lib/pysb/examples copying pysb/examples/run_bax_pore_sequential.py -> build/lib/pysb/examples copying pysb/examples/run_bng_ssa_example.py -> build/lib/pysb/examples copying pysb/examples/run_earm_1_0.py -> build/lib/pysb/examples copying pysb/examples/run_earm_hpp.py -> build/lib/pysb/examples copying pysb/examples/run_earm_stochkit.py -> build/lib/pysb/examples copying pysb/examples/run_fixed_initial.py -> build/lib/pysb/examples copying pysb/examples/run_kinase_cascade.py -> build/lib/pysb/examples copying pysb/examples/run_michment.py -> build/lib/pysb/examples copying pysb/examples/run_robertson.py -> build/lib/pysb/examples copying pysb/examples/run_tutorial_a.py -> build/lib/pysb/examples copying pysb/examples/run_tyson_oscillator.py -> build/lib/pysb/examples copying pysb/examples/run_tyson_oscillator_stochkit.py -> build/lib/pysb/examples copying pysb/examples/schloegl.py -> build/lib/pysb/examples copying pysb/examples/synth_deg.py -> build/lib/pysb/examples copying pysb/examples/tutorial_a.py -> build/lib/pysb/examples copying pysb/examples/tutorial_b.py -> build/lib/pysb/examples copying pysb/examples/tutorial_c.py -> build/lib/pysb/examples copying pysb/examples/tyson_oscillator.py -> build/lib/pysb/examples creating build/lib/pysb/export copying pysb/export/__init__.py -> build/lib/pysb/export copying pysb/export/__main__.py -> build/lib/pysb/export copying pysb/export/bng_net.py -> build/lib/pysb/export copying pysb/export/bngl.py -> build/lib/pysb/export copying pysb/export/json.py -> build/lib/pysb/export copying pysb/export/kappa.py -> build/lib/pysb/export copying pysb/export/mathematica.py -> build/lib/pysb/export copying pysb/export/matlab.py -> build/lib/pysb/export copying pysb/export/potterswheel.py -> build/lib/pysb/export copying pysb/export/pysb_flat.py -> build/lib/pysb/export copying pysb/export/sbml.py -> build/lib/pysb/export copying pysb/export/stochkit.py -> build/lib/pysb/export creating build/lib/pysb/simulator copying pysb/simulator/__init__.py -> build/lib/pysb/simulator copying pysb/simulator/base.py -> build/lib/pysb/simulator copying pysb/simulator/bng.py -> build/lib/pysb/simulator copying pysb/simulator/cuda_ssa.py -> build/lib/pysb/simulator copying pysb/simulator/cupsoda.py -> build/lib/pysb/simulator copying pysb/simulator/kappa.py -> build/lib/pysb/simulator copying pysb/simulator/opencl_ssa.py -> build/lib/pysb/simulator copying pysb/simulator/scipyode.py -> build/lib/pysb/simulator copying pysb/simulator/ssa_base.py -> build/lib/pysb/simulator copying pysb/simulator/stochkit.py -> build/lib/pysb/simulator creating build/lib/pysb/simulator/templates copying pysb/simulator/templates/__init__.py -> build/lib/pysb/simulator/templates creating build/lib/pysb/testing copying pysb/testing/__init__.py -> build/lib/pysb/testing copying pysb/testing/modeltests.py -> build/lib/pysb/testing creating build/lib/pysb/tests copying pysb/tests/__init__.py -> build/lib/pysb/tests copying pysb/tests/jacobian_runtimes.py -> build/lib/pysb/tests copying pysb/tests/test_bng.py -> build/lib/pysb/tests copying pysb/tests/test_core.py -> build/lib/pysb/tests copying pysb/tests/test_examples.py -> build/lib/pysb/tests copying pysb/tests/test_exporters.py -> build/lib/pysb/tests copying pysb/tests/test_expressions.py -> build/lib/pysb/tests copying pysb/tests/test_importers.py -> build/lib/pysb/tests copying pysb/tests/test_integrate.py -> build/lib/pysb/tests copying pysb/tests/test_kappa.py -> build/lib/pysb/tests copying pysb/tests/test_macros.py -> build/lib/pysb/tests copying pysb/tests/test_pathfinder.py -> build/lib/pysb/tests copying pysb/tests/test_pattern.py -> build/lib/pysb/tests copying pysb/tests/test_sensitivity_analysis.py -> build/lib/pysb/tests copying pysb/tests/test_simulationresult.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_bng.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_cuda_opencl_ssa.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_cupsoda.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_kappa.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_scipy.py -> build/lib/pysb/tests copying pysb/tests/test_simulator_stochkit.py -> build/lib/pysb/tests copying pysb/tests/test_util.py -> build/lib/pysb/tests running egg_info creating pysb.egg-info writing pysb.egg-info/PKG-INFO writing dependency_links to pysb.egg-info/dependency_links.txt writing requirements to pysb.egg-info/requires.txt writing top-level names to pysb.egg-info/top_level.txt writing manifest file 'pysb.egg-info/SOURCES.txt' reading manifest file 'pysb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' adding license file 'LICENSE.txt' writing manifest file 'pysb.egg-info/SOURCES.txt' copying pysb/simulator/tyche_i.h -> build/lib/pysb/simulator copying pysb/simulator/templates/cuda_ssa.cu -> build/lib/pysb/simulator/templates copying pysb/simulator/templates/opencl_ssa.cl -> build/lib/pysb/simulator/templates UPDATING build/lib/pysb/_version.py set build/lib/pysb/_version.py to '1.16.0' running build_scripts creating build/scripts-3.13 copying and adjusting scripts/pysb_export -> build/scripts-3.13 changing mode of build/scripts-3.13/pysb_export from 644 to 755 + make -C doc html make: Entering directory '/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v7.3.7 making output directory... done [autosummary] generating autosummary for: faq.rst, index.rst, installation.rst, modules/bng.rst, modules/core.rst, modules/export/bng_net.rst, modules/export/bngl.rst, modules/export/index.rst, modules/export/json.rst, modules/export/kappa.rst, ..., modules/modeltests.rst, modules/pathfinder.rst, modules/pattern.rst, modules/simulator.rst, modules/tools/render.rst, modules/tools/render_reactions.rst, modules/tools/render_species.rst, modules/tools/sensitivity_analysis.rst, tutorial.rst, useful_references.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 31 source files that are out of date updating environment: [new config] 31 added, 0 changed, 0 removed reading sources... [ 3%] faq reading sources... [ 6%] index reading sources... [ 10%] installation reading sources... [ 13%] modules/bng reading sources... [ 16%] modules/core reading sources... [ 19%] modules/export/bng_net reading sources... [ 23%] modules/export/bngl reading sources... [ 26%] modules/export/index reading sources... [ 29%] modules/export/json reading sources... [ 32%] modules/export/kappa reading sources... [ 35%] modules/export/mathematica reading sources... [ 39%] modules/export/matlab reading sources... [ 42%] modules/export/potterswheel reading sources... [ 45%] modules/export/pysb_flat reading sources... [ 48%] modules/export/sbml reading sources... [ 52%] modules/export/stochkit reading sources... [ 55%] modules/importers/index reading sources... [ 58%] modules/index reading sources... [ 61%] modules/integrate reading sources... [ 65%] modules/kappa reading sources... [ 68%] modules/macros reading sources... [ 71%] modules/modeltests reading sources... [ 74%] modules/pathfinder reading sources... [ 77%] modules/pattern reading sources... [ 81%] modules/simulator reading sources... [ 84%] modules/tools/render reading sources... [ 87%] modules/tools/render_reactions reading sources... [ 90%] modules/tools/render_species reading sources... [ 94%] modules/tools/sensitivity_analysis reading sources... [ 97%] tutorial reading sources... [100%] useful_references looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 3%] faq writing output... [ 6%] index writing output... [ 10%] installation writing output... [ 13%] modules/bng writing output... [ 16%] modules/core writing output... [ 19%] modules/export/bng_net writing output... [ 23%] modules/export/bngl writing output... [ 26%] modules/export/index writing output... [ 29%] modules/export/json writing output... [ 32%] modules/export/kappa writing output... [ 35%] modules/export/mathematica writing output... [ 39%] modules/export/matlab writing output... [ 42%] modules/export/potterswheel writing output... [ 45%] modules/export/pysb_flat writing output... [ 48%] modules/export/sbml writing output... [ 52%] modules/export/stochkit writing output... [ 55%] modules/importers/index writing output... [ 58%] modules/index writing output... [ 61%] modules/integrate writing output... [ 65%] modules/kappa writing output... [ 68%] modules/macros writing output... [ 71%] modules/modeltests writing output... [ 74%] modules/pathfinder writing output... [ 77%] modules/pattern writing output... [ 81%] modules/simulator writing output... [ 84%] modules/tools/render writing output... [ 87%] modules/tools/render_reactions writing output... [ 90%] modules/tools/render_species writing output... [ 94%] modules/tools/sensitivity_analysis writing output... [ 97%] tutorial writing output... [100%] useful_references generating indices... genindex py-modindex done highlighting module code... [ 3%] pysb.bng highlighting module code... [ 6%] pysb.core highlighting module code... [ 9%] pysb.export highlighting module code... [ 12%] pysb.export.bng_net highlighting module code... [ 16%] pysb.export.bngl highlighting module code... [ 19%] pysb.export.json highlighting module code... [ 22%] pysb.export.kappa highlighting module code... [ 25%] pysb.export.mathematica highlighting module code... [ 28%] pysb.export.matlab highlighting module code... [ 31%] pysb.export.potterswheel highlighting module code... [ 34%] pysb.export.pysb_flat highlighting module code... [ 38%] pysb.export.sbml highlighting module code... [ 41%] pysb.export.stochkit highlighting module code... [ 44%] pysb.importers.bngl highlighting module code... [ 47%] pysb.importers.sbml highlighting module code... [ 50%] pysb.integrate highlighting module code... [ 53%] pysb.kappa highlighting module code... [ 56%] pysb.macros highlighting module code... [ 59%] pysb.pathfinder highlighting module code... [ 62%] pysb.pattern highlighting module code... [ 66%] pysb.simulator.base highlighting module code... [ 69%] pysb.simulator.bng highlighting module code... [ 72%] pysb.simulator.cuda_ssa highlighting module code... [ 75%] pysb.simulator.cupsoda highlighting module code... [ 78%] pysb.simulator.kappa highlighting module code... [ 81%] pysb.simulator.opencl_ssa highlighting module code... [ 84%] pysb.simulator.scipyode highlighting module code... [ 88%] pysb.simulator.stochkit highlighting module code... [ 91%] pysb.testing.modeltests highlighting module code... [ 94%] pysb.tools.render_reactions highlighting module code... [ 97%] pysb.tools.render_species highlighting module code... [100%] pysb.tools.sensitivity_analysis writing additional pages... search done copying images... [ 50%] modules/tools/robertson_reactions.png copying images... [100%] examples/fig_mymodel4.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make: Leaving directory '/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc' + rm doc/_build/html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.kUeX5i + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + '[' /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build + mkdir /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysb-1.16.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/_version.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/anneal_mod.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/annotation.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/builder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/core.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/integrate.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/jacobian.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/logging.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/macros.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/pathfinder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/pattern.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/util.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb copying build/lib/pysb/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator copying build/lib/pysb/generator/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator copying build/lib/pysb/generator/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator copying build/lib/pysb/generator/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers copying build/lib/pysb/importers/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers copying build/lib/pysb/importers/bngl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers copying build/lib/pysb/importers/json.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers copying build/lib/pysb/importers/sbml.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools copying build/lib/pysb/tools/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools copying build/lib/pysb/tools/render_reactions.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools copying build/lib/pysb/tools/render_species.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools copying build/lib/pysb/tools/sensitivity_analysis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools copying build/lib/pysb/tools/species_graph.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/bax_pore.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/bax_pore_sequential.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/bngwiki_egfr_simple.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/bngwiki_enzymatic_cycle_mm.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/bngwiki_simple.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/earm_1_0.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/earm_1_3.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/explicit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/expression_observables.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/fixed_initial.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/fricker_2010_apoptosis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/hello_pysb.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/kinase_cascade.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/localfunc.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/michment.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/move_connected.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/robertson.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_bax_pore.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_bax_pore_sequential.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_bng_ssa_example.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_earm_1_0.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_earm_hpp.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_earm_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_fixed_initial.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_kinase_cascade.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_michment.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_robertson.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_tutorial_a.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_tyson_oscillator.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/run_tyson_oscillator_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/schloegl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/synth_deg.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/tutorial_a.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/tutorial_b.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/tutorial_c.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples copying build/lib/pysb/examples/tyson_oscillator.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/__main__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/bng_net.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/bngl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/json.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/mathematica.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/matlab.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/potterswheel.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/pysb_flat.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/sbml.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export copying build/lib/pysb/export/stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/base.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/cuda_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/cupsoda.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/opencl_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/scipyode.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/ssa_base.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator copying build/lib/pysb/simulator/stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/templates copying build/lib/pysb/simulator/templates/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/templates copying build/lib/pysb/simulator/templates/cuda_ssa.cu -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/templates copying build/lib/pysb/simulator/templates/opencl_ssa.cl -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/templates copying build/lib/pysb/simulator/tyche_i.h -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/testing copying build/lib/pysb/testing/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/testing copying build/lib/pysb/testing/modeltests.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/testing creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/jacobian_runtimes.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_core.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_examples.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_exporters.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_expressions.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_importers.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_integrate.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_macros.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_pathfinder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_pattern.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_sensitivity_analysis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulationresult.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_cuda_opencl_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_cupsoda.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_scipy.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_simulator_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests copying build/lib/pysb/tests/test_util.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/_version.py to _version.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/anneal_mod.py to anneal_mod.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/annotation.py to annotation.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/builder.py to builder.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/core.py to core.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/integrate.py to integrate.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/jacobian.py to jacobian.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/kappa.py to kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/logging.py to logging.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/macros.py to macros.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/pathfinder.py to pathfinder.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/pattern.py to pattern.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/util.py to util.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/bng.py to bng.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator/bng.py to bng.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/generator/kappa.py to kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers/bngl.py to bngl.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers/json.py to json.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/importers/sbml.py to sbml.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools/render_reactions.py to render_reactions.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools/render_species.py to render_species.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools/sensitivity_analysis.py to sensitivity_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tools/species_graph.py to species_graph.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/bax_pore.py to bax_pore.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/bax_pore_sequential.py to bax_pore_sequential.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/bngwiki_egfr_simple.py to bngwiki_egfr_simple.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/bngwiki_enzymatic_cycle_mm.py to bngwiki_enzymatic_cycle_mm.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/bngwiki_simple.py to bngwiki_simple.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/earm_1_0.py to earm_1_0.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/earm_1_3.py to earm_1_3.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/explicit.py to explicit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/expression_observables.py to expression_observables.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/fixed_initial.py to fixed_initial.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/fricker_2010_apoptosis.py to fricker_2010_apoptosis.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/hello_pysb.py to hello_pysb.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/kinase_cascade.py to kinase_cascade.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/localfunc.py to localfunc.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/michment.py to michment.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/move_connected.py to move_connected.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/robertson.py to robertson.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_bax_pore.py to run_bax_pore.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_bax_pore_sequential.py to run_bax_pore_sequential.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_bng_ssa_example.py to run_bng_ssa_example.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_earm_1_0.py to run_earm_1_0.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_earm_hpp.py to run_earm_hpp.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_earm_stochkit.py to run_earm_stochkit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_fixed_initial.py to run_fixed_initial.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_kinase_cascade.py to run_kinase_cascade.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_michment.py to run_michment.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_robertson.py to run_robertson.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_tutorial_a.py to run_tutorial_a.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_tyson_oscillator.py to run_tyson_oscillator.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py to run_tyson_oscillator_stochkit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/schloegl.py to schloegl.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/synth_deg.py to synth_deg.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/tutorial_a.py to tutorial_a.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/tutorial_b.py to tutorial_b.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/tutorial_c.py to tutorial_c.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/examples/tyson_oscillator.py to tyson_oscillator.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/__main__.py to __main__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/bng_net.py to bng_net.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/bngl.py to bngl.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/json.py to json.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/kappa.py to kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/mathematica.py to mathematica.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/matlab.py to matlab.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/potterswheel.py to potterswheel.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/pysb_flat.py to pysb_flat.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/sbml.py to sbml.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/export/stochkit.py to stochkit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/base.py to base.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/bng.py to bng.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/cuda_ssa.py to cuda_ssa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/cupsoda.py to cupsoda.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/kappa.py to kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/opencl_ssa.py to opencl_ssa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/scipyode.py to scipyode.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/ssa_base.py to ssa_base.cpython-313.pyc /usr/lib/python3.13/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: invalid escape sequence '\d' byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/stochkit.py to stochkit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/simulator/templates/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/testing/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/testing/modeltests.py to modeltests.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/jacobian_runtimes.py to jacobian_runtimes.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_bng.py to test_bng.cpython-313.pyc /usr/lib/python3.13/site-packages/pysb/tests/test_bng.py:254: SyntaxWarning: invalid escape sequence '\(' byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_core.py to test_core.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_examples.py to test_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_exporters.py to test_exporters.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_expressions.py to test_expressions.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_importers.py to test_importers.cpython-313.pyc /usr/lib/python3.13/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: invalid escape sequence '\w' byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_integrate.py to test_integrate.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_kappa.py to test_kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_macros.py to test_macros.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_pathfinder.py to test_pathfinder.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_pattern.py to test_pattern.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_sensitivity_analysis.py to test_sensitivity_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulationresult.py to test_simulationresult.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_bng.py to test_simulator_bng.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_cuda_opencl_ssa.py to test_simulator_cuda_opencl_ssa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_cupsoda.py to test_simulator_cupsoda.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_kappa.py to test_simulator_kappa.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_scipy.py to test_simulator_scipy.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_simulator_stochkit.py to test_simulator_stochkit.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/tests/test_util.py to test_util.cpython-313.pyc writing byte-compilation script '/tmp/tmpb9qq1hdn.py' /usr/bin/python3 /tmp/tmpb9qq1hdn.py /usr/lib/python3.13/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/pysb/tests/test_bng.py:254: SyntaxWarning: invalid escape sequence '\(' /usr/lib/python3.13/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: invalid escape sequence '\w' removing /tmp/tmpb9qq1hdn.py running install_egg_info running egg_info writing pysb.egg-info/PKG-INFO writing dependency_links to pysb.egg-info/dependency_links.txt writing requirements to pysb.egg-info/requires.txt writing top-level names to pysb.egg-info/top_level.txt reading manifest file 'pysb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pysb.egg-info/SOURCES.txt' Copying pysb.egg-info to /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb-1.16.0-py3.13.egg-info running install_scripts creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin copying build/scripts-3.13/pysb_export -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin/pysb_export to 755 + rm -rfv /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin/__pycache__ + chmod +x /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_bax_pore.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_bax_pore_sequential.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_bng_ssa_example.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_earm_1_0.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_earm_hpp.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_earm_stochkit.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_fixed_initial.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_kinase_cascade.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_michment.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_robertson.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_tutorial_a.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_tyson_oscillator.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py + chmod +x /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/tools/render_reactions.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/tools/render_species.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/tools/sensitivity_analysis.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.13/site-packages/pysb/tools/species_graph.py + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + 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normalized version /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/jacobian.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/kappa.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/integrate.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/logging.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/pathfinder.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/macros.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/pattern.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/util.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pysb/__pycache__/core.cpython-313.pyc: replacing with normalized version Scanned 27 directories and 342 files, processed 134 inodes, 134 modified (46 replaced + 88 rewritten), 0 unsupported format, 0 errors Processing files: python3-pysb-1.16.0-8.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iATUcO + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + cd pysb-1.16.0 + DOCDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/README.rst /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.daV9VQ + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + cd pysb-1.16.0 + LICENSEDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/LICENSE.txt /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pysb = 1.16.0-8.fc42 python3-pysb = 1.16.0-8.fc42 python3.13-pysb = 1.16.0-8.fc42 python3.13dist(pysb) = 1.16 python3dist(pysb) = 1.16 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(networkx) python3.13dist(numpy) python3.13dist(scipy) >= 1.1 python3.13dist(sympy) >= 1.6 Obsoletes: python-pysb < 1.16.0-8.fc42 Processing files: python-pysb-doc-1.16.0-8.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.LquHbh + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + cd pysb-1.16.0 + DOCDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mBxL2L + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + cd pysb-1.16.0 + LICENSEDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/LICENSE.txt /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(jquery) python-pysb-doc = 1.16.0-8.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: python-pysb-docs <= 1.0.1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-pysb-1.16.0-8.fc42.noarch.rpm Wrote: /builddir/build/RPMS/python-pysb-doc-1.16.0-8.fc42.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.IwkqQ6 + umask 022 + cd /builddir/build/BUILD/python-pysb-1.16.0-build + test -d /builddir/build/BUILD/python-pysb-1.16.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pysb-1.16.0-build + rm -rf /builddir/build/BUILD/python-pysb-1.16.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-pysb-1.16.0-8.fc42.src.rpm Finish: build phase for python-pysb-1.16.0-8.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725491636.828406/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/python-pysb-1.16.0-8.fc42.src.rpm) Config(child) 1 minutes 24 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-pysb-doc", "epoch": null, "version": "1.16.0", "release": "8.fc42", "arch": "noarch" }, { "name": "python-pysb", "epoch": null, "version": "1.16.0", "release": "8.fc42", "arch": "src" }, { "name": "python3-pysb", "epoch": null, "version": "1.16.0", "release": "8.fc42", "arch": "noarch" } ] } RPMResults finished