# Generated from bio-polyploid-tools-1.2.1.gem by gem2rpm -*- rpm-spec -*-
%global gem_name bio-polyploid-tools

Name: rubygem-%{gem_name}
Version: 1.2.1
Release: 1%{?dist}
Summary: Tool to work with polyploids, NGS and molecular biology
License: MIT
URL: http://github.com/tgac/bioruby-polyploid-tools
Source0: https://rubygems.org/gems/%{gem_name}-%{version}.gem
BuildRequires: ruby(release)
BuildRequires: rubygems-devel
BuildRequires: ruby
# BuildRequires: rubygem(shoulda) >= 2.10
# BuildRequires: rubygem(test-unit)
# BuildRequires: rubygem(juwelier)
BuildArch: noarch

%description
Repository of tools developed at Crop Genetics in JIC to work with polyploid
wheat.


%package doc
Summary: Documentation for %{name}
Requires: %{name} = %{version}-%{release}
BuildArch: noarch

%description doc
Documentation for %{name}.

%prep
%setup -q -n %{gem_name}-%{version}

%build
# Create the gem as gem install only works on a gem file
gem build ../%{gem_name}-%{version}.gemspec

# %%gem_install compiles any C extensions and installs the gem into ./%%gem_dir
# by default, so that we can move it into the buildroot in %%install
%gem_install

%install
mkdir -p %{buildroot}%{gem_dir}
cp -a .%{gem_dir}/* \
        %{buildroot}%{gem_dir}/


mkdir -p %{buildroot}%{_bindir}
cp -a .%{_bindir}/* \
        %{buildroot}%{_bindir}/

find %{buildroot}%{gem_instdir}/bin -type f | xargs chmod a+x

%check
pushd .%{gem_instdir}
# ruby -e 'Dir.glob "./test/**/*_test.rb", &method(:require)'
popd

%files
%dir %{gem_instdir}
%{_bindir}/bfr.rb
%{_bindir}/blast_triads.rb
%{_bindir}/blast_triads_promoters.rb
%{_bindir}/count_variations.rb
%{_bindir}/filter_blat_by_target_coverage.rb
%{_bindir}/filter_exonerate_by_identity.rb
%{_bindir}/find_best_blat_hit.rb
%{_bindir}/find_best_exonerate.rb
%{_bindir}/get_longest_hsp_blastx_triads.rb
%{_bindir}/hexaploid_primers.rb
%{_bindir}/homokaryot_primers.rb
%{_bindir}/mafft_triads.rb
%{_bindir}/mafft_triads_promoters.rb
%{_bindir}/map_markers_to_contigs.rb
%{_bindir}/marker_to_vcf.rb
%{_bindir}/markers_in_region.rb
%{_bindir}/mask_triads.rb
%{_bindir}/polymarker.rb
%{_bindir}/polymarker_capillary.rb
%{_bindir}/polymarker_deletions.rb
%{_bindir}/snp_position_to_polymarker.rb
%{_bindir}/snps_between_bams.rb
%{_bindir}/tag_stats.rb
%{_bindir}/vcfLineToTable.rb
%{_bindir}/vcfToPolyMarker.rb
%exclude %{gem_instdir}/.travis.yml
%{gem_instdir}/SECURITY.md
%{gem_instdir}/VERSION
%{gem_instdir}/bin
%{gem_instdir}/conf
%{gem_libdir}
%exclude %{gem_cache}
%{gem_spec}

%files doc
%doc %{gem_docdir}
%{gem_instdir}/Gemfile
%doc %{gem_instdir}/README.md
%{gem_instdir}/Rakefile
%{gem_instdir}/bio-polyploid-tools.gemspec
%{gem_instdir}/test

%changelog
* Sun Sep 12 2021 mockbuilder - 1.2.1-1
- Initial package