class Bio::Muscle

Bio::Muscle is a wrapper class to execute MUSCLE.

Please refer documents in bio/apple/muscle.rb for references.

Constants

DEFAULT_PARSER

Data class for fasta-formatted multiple sequence alignment data, which is simply multiple entiries of fasta formatted sequences.

DEFAULT_PROGRAM

default program name

Private Instance Methods

_option_input_file(fn) click to toggle source

generates options specifying input filename. returns an array of string

   # File lib/bio/appl/muscle.rb
41 def _option_input_file(fn)
42   [ '-in', fn ]
43 end
_option_output_file(fn) click to toggle source

generates options specifying output filename. returns an array of string

   # File lib/bio/appl/muscle.rb
47 def _option_output_file(fn)
48   [ '-out', fn ]
49 end