@api public

NOTE: this is probably not the best place for this, ultimately. If it works, think about moving it.

UCSCBin¶ ↑

Author

MISHIMA, Hiroyuki

Copyright

MISHIMA, Hiroyuki, 2010-2011

License

The Ruby licence (Ryby’s / GPLv2 dual)

Original program in C by Jim Kent, 2002 See also genomewiki.ucsc.edu/index.php/Bin_indexing_system; a paper Kent, et. al. Genome Research 2002.12:996-1006; and src/lib/binRange.c in the kent source tree.

Bio::Ucsc::UcscBin - 1) convert between 0-based half-open interval and

1-based full-close intervals.

2) Calculate Bin number from genomic physical position according to UCSC’s Bin Indexing System.