class Bio::MAF::FASTAWriter

Public Class Methods

new(outf) click to toggle source
# File lib/bio/maf/writer.rb, line 67
def initialize(outf)
  @f = outf
end

Public Instance Methods

close() click to toggle source
# File lib/bio/maf/writer.rb, line 84
def close
  @f.close
end
write_block(block) click to toggle source
# File lib/bio/maf/writer.rb, line 71
def write_block(block)
  block.sequences.each do |seq|
    write_sequence(seq) unless seq.empty?
  end
end
write_sequence(seq) click to toggle source
# File lib/bio/maf/writer.rb, line 77
def write_sequence(seq)
  @f.puts(">#{seq.fasta_desc}")
  0.step(seq.text.size, FASTA_LINE_LEN) do |pos|
    @f.puts(seq.text.slice(pos, FASTA_LINE_LEN))
  end
end