Table of Contents - bio-rocker-1.5.2 Documentation
Classes and Modules
Methods
- ::CITATION — ROCker
- ::DATE — ROCker
- ::R_BIN= — RInterface
- ::VERSION — ROCker
- ::default — ROCker
- ::defaults — ROCker
- ::ebirest — ROCker
- ::has_build_gems? — ROCker
- ::new — ROCker
- ::new — Alignment
- ::new — BlastHit
- ::new — GenomeSet
- ::new — ProteinSet
- ::new — RInterface
- ::new — ROCData
- ::new — ROCWindow
- ::new — Sequence
- #<< — Alignment
- #_refine_iter — ROCData
- #almost_empty — ROCWindow
- #around_thr — ROCWindow
- #bash — ROCker
- #blast2table — ROCker
- #build! — ROCker
- #choose_genomes! — GenomeSet
- #col2pos — Sequence
- #cols — Sequence
- #compile! — ROCker
- #compute! — ROCWindow
- #correct_bs — ROCker
- #delete! — GenomeSet
- #download — GenomeSet
- #download — ProteinSet
- #ebiFetch — ROCker
- #empty? — GenomeSet
- #empty? — ProteinSet
- #filter! — ROCker
- #fps — ROCWindow
- #genome2taxid — GenomeSet
- #genome2taxon — GenomeSet
- #genome_by_prot_id — ProteinSet
- #genomes — ProteinSet
- #get_coords_from_gff3 — ROCker
- #get_from_aln — ProteinSet
- #get_genomes! — ProteinSet
- #get_ids — Alignment
- #get_taxonomy! — GenomeSet
- #in_coords — ProteinSet
- #in_nucl? — ROCData
- #include? — ProteinSet
- #init_windows! — ROCData
- #is_refined? — ROCData
- #length — ROCWindow
- #length — Sequence
- #link_genome — ProteinSet
- #link_taxon — GenomeSet
- #link_tranid — ProteinSet
- #load_hits — ROCWindow
- #load_table! — ROCData
- #next — ROCWindow
- #nucl= — ROCData
- #ordinalize — Numeric
- #plot! — ROCker
- #pos2col — Sequence
- #previous — ROCWindow
- #read_fasta — Alignment
- #read_file — Alignment
- #read_rocker — Alignment
- #refine! — ROCData
- #remove_genomes_by_prot_id! — ProteinSet
- #restcall — ROCker
- #rrun — ROCData
- #rrun — ROCWindow
- #run — RInterface
- #save — ROCData
- #search! — ROCker
- #seq — Alignment
- #size — Alignment
- #size — GenomeSet
- #size — ProteinSet
- #taxa= — GenomeSet
- #thr_notnil — ROCWindow
- #to_s — Alignment
- #to_s — BlastHit
- #to_s — ROCData
- #to_s — ROCWindow
- #to_s — Sequence
- #to_seq_s — Alignment
- #to_seq_s — Sequence
- #tranids — ProteinSet
- #tranids_dump — ProteinSet
- #win_at_col — ROCData