class BlastResult
Extracts results from blast table’s file and uses it to create instances of “BlastQuery” and “BlastHit”
Attributes
querys[RW]
Public Class Methods
new(input)
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Parser initialization
# File lib/scbi_blast/blast_result.rb, line 34 def initialize(input) @querys = [] # if input.is_a?(Array) # lines=input # else # fich = File.open(input,'r') # lines = fich.readlines # fich.close # end end
Public Instance Methods
compare?(results)
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# File lib/scbi_blast/blast_result.rb, line 79 def compare?(results) res = true @querys.each_with_index do |q,i| res &&= q.compare?(results.querys[i]) end return res end
empty?()
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check if there are querys
# File lib/scbi_blast/blast_result.rb, line 70 def empty? return @querys.empty? end
find_query(querys,name_q)
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find query by name
# File lib/scbi_blast/blast_result.rb, line 58 def find_query(querys,name_q) # newq = querys.find{|q| ( q.find{|h| (h.subject_id)})} new_q=nil if !querys.empty? new_q=querys.find{|q| (q.query_id==name_q)} end return new_q end
inspect()
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inspect results
# File lib/scbi_blast/blast_result.rb, line 49 def inspect res = "Blast results:\n" res+= '-'*20 res+= "\nQuerys: #{@querys.count}\n" @querys.each{|q| res+=q.inspect+"\n"} return res end
size()
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get query count
# File lib/scbi_blast/blast_result.rb, line 75 def size @querys.size end