Table of Contents - scbi_blast-0.0.43 Documentation
Pages
Classes and Modules
- BatchBlast
- BlastHit
- BlastQuery
- BlastResult
- BlastSimplexmlResult
- BlastStreamxmlResult
- BlastTableResult
- BlastXmlResult
- DustMasker
- DustQuery
- Object
- ScbiBlast
Methods
- ::do_blast_cmd — BatchBlast
- ::new — BatchBlast
- ::new — BlastHit
- ::new — BlastQuery
- ::new — BlastResult
- ::new — BlastSimplexmlResult
- ::new — BlastStreamxmlResult
- ::new — BlastTableResult
- ::new — BlastXmlResult
- ::new — DustQuery
- ::new — DustMasker
- #acc= — BlastHit
- #add_hit — BlastQuery
- #align_len= — BlastHit
- #bit_score= — BlastHit
- #close — BatchBlast
- #close — DustMasker
- #compare? — BlastHit
- #compare? — BlastQuery
- #compare? — BlastResult
- #definition= — BlastHit
- #do_blast — BatchBlast
- #do_blast_seqs — BatchBlast
- #do_dust — DustMasker
- #do_parse — BlastStreamxmlResult
- #e_val= — BlastHit
- #empty? — BlastResult
- #empty? — BlastXmlResult
- #find_query — BlastResult
- #find_query — BlastXmlResult
- #full_subject_length= — BlastHit
- #gaps= — BlastHit
- #get_blast_cmd — BatchBlast
- #get_cmd — DustMasker
- #get_subject — BlastHit
- #ident= — BlastHit
- #inspect — BlastHit
- #inspect — BlastQuery
- #inspect — BlastResult
- #inspect — BlastXmlResult
- #inspect — DustQuery
- #merge_hits — BlastQuery
- #merged_hits! — BlastQuery
- #mismatches= — BlastHit
- #parse — BlastSimplexmlResult
- #parse — BlastTableResult
- #push — DustQuery
- #q_frame= — BlastHit
- #q_len= — BlastHit
- #q_seq= — BlastHit
- #query_overlaps? — BlastHit
- #s_frame= — BlastHit
- #s_len= — BlastHit
- #s_seq= — BlastHit
- #score= — BlastHit
- #set_limits — BlastHit
- #size — BlastHit
- #size — BlastQuery
- #size — BlastResult
- #size — BlastXmlResult
- #sort — BlastQuery
- #subject_id= — BlastHit
- #tag_end — BlastStreamxmlResult
- #tag_start — BlastStreamxmlResult
- #text — BlastStreamxmlResult