Mock Version: 2.12 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/rubygem-bio-polyploid-tools.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1631872513.302339/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'be52540e8e104bd690ef32d625cd22bd', '-D', '/var/lib/mock/fedora-rawhide-i686-1631872513.302339/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/rubygem-bio-polyploid-tools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1631404800 Wrote: /builddir/build/SRPMS/rubygem-bio-polyploid-tools-1.2.1-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/rubygem-bio-polyploid-tools.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1631872513.302339/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1067c4bfbae246898590f039f5c8a78b', '-D', '/var/lib/mock/fedora-rawhide-i686-1631872513.302339/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4ofddn_j:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/rubygem-bio-polyploid-tools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1631404800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Cq87lw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bio-polyploid-tools-1.2.1 + /usr/bin/gem unpack /builddir/build/SOURCES/bio-polyploid-tools-1.2.1.gem Unpacked gem: '/builddir/build/BUILD/bio-polyploid-tools-1.2.1' + /usr/bin/gem spec /builddir/build/SOURCES/bio-polyploid-tools-1.2.1.gem --ruby + STATUS=0 + '[' 0 -ne 0 ']' + cd bio-polyploid-tools-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.g5TEYr + umask 022 + cd /builddir/build/BUILD + cd bio-polyploid-tools-1.2.1 + gem build ../bio-polyploid-tools-1.2.1.gemspec WARNING: bin/blast_triads.rb is not executable WARNING: bin/blast_triads_promoters.rb is not executable WARNING: bin/filter_exonerate_by_identity.rb is not executable WARNING: bin/find_best_exonerate.rb is not executable WARNING: bin/get_longest_hsp_blastx_triads.rb is not executable WARNING: bin/mafft_triads.rb is not executable WARNING: bin/mafft_triads_promoters.rb is not executable WARNING: bin/marker_to_vcf.rb is not executable WARNING: bin/mask_triads.rb is not executable WARNING: bin/polymarker_capillary.rb is not executable WARNING: bin/polymarker_deletions.rb is not executable WARNING: bin/tag_stats.rb is not executable WARNING: bin/vcfLineToTable.rb is not executable WARNING: bin/vcfToPolyMarker.rb is not executable WARNING: bin/vcfLineToTable.rb is missing #! line WARNING: open-ended dependency on bio (>= 1.5.1) is not recommended if bio is semantically versioned, use: add_runtime_dependency 'bio', '~> 1.5', '>= 1.5.1' WARNING: open-ended dependency on bio-samtools (>= 2.6.2) is not recommended if bio-samtools is semantically versioned, use: add_runtime_dependency 'bio-samtools', '~> 2.6', '>= 2.6.2' WARNING: open-ended dependency on descriptive_statistics (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on systemu (>= 2.5.2) is not recommended if systemu is semantically versioned, use: add_runtime_dependency 'systemu', '~> 2.5', '>= 2.5.2' WARNING: open-ended dependency on shoulda (>= 2.10, development) is not recommended if shoulda is semantically versioned, use: add_development_dependency 'shoulda', '~> 2.10' WARNING: open-ended dependency on test-unit (>= 0, development) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on juwelier (>= 0, development) is not recommended use a bounded requirement, such as '~> x.y' WARNING: See https://guides.rubygems.org/specification-reference/ for help Successfully built RubyGem Name: bio-polyploid-tools Version: 1.2.1 File: bio-polyploid-tools-1.2.1.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc bio-polyploid-tools-1.2.1.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/bio-polyploid-tools-1.2.1 Bin dir: /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin Gem home: /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems Plugins dir: /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/plugins /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/.travis.yml /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/Gemfile /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/README.md /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/Rakefile /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/SECURITY.md /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/VERSION /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/bfr.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/blast_triads.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/blast_triads_promoters.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/count_variations.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/filter_blat_by_target_coverage.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/filter_exonerate_by_identity.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/find_best_blat_hit.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/find_best_exonerate.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/get_longest_hsp_blastx_triads.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/hexaploid_primers.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/homokaryot_primers.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mafft_triads.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mafft_triads_promoters.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/map_markers_to_contigs.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/marker_to_vcf.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/markers_in_region.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mask_triads.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker_capillary.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker_deletions.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/snp_position_to_polymarker.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/snps_between_bams.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/tag_stats.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/vcfLineToTable.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/vcfToPolyMarker.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bio-polyploid-tools.gemspec /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/defaults.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/dangle.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/dangle.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/dangle_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/dangle_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/loops_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/loops_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/stack_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/stack_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/stackmm_i_mm.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/stackmm_i_mm.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tetraloop_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tetraloop_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/triloop_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/triloop_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack2_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack2_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack_tm_inf_i.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/interpretations/tstack_tm_inf_i.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/loops.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/loops.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/stack.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/stack.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/stackmm.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/stackmm.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tetraloop.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tetraloop.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/triloop.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/triloop.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tstack.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tstack2.dh /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tstack2.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/primer3_config/tstack_tm_inf.ds /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/BFRTools.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/BIOExtensions.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/PolyploidTools/ChromosomeArm.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/PolyploidTools/ExonContainer.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/PolyploidTools/Marker.rb 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/builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/mafft_triads_promoters.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/map_markers_to_contigs.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/marker_to_vcf.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/markers_in_region.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/mask_triads.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/polymarker.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/polymarker_capillary.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/polymarker_deletions.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/snp_position_to_polymarker.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/snps_between_bams.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/tag_stats.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/vcfLineToTable.rb /builddir/build/BUILD/bio-polyploid-tools-1.2.1/usr/bin/vcfToPolyMarker.rb Successfully installed bio-polyploid-tools-1.2.1 Parsing documentation for bio-polyploid-tools-1.2.1 Parsing sources... 6% [ 1/16] README.md 12% [ 2/16] lib/bio/BFRTools.rb 18% [ 3/16] lib/bio/BIOExtensions.rb 25% [ 4/16] lib/bio/PolyploidTools/ChromosomeArm.rb 31% [ 5/16] lib/bio/PolyploidTools/ExonContainer.rb 37% [ 6/16] lib/bio/PolyploidTools/Marker.rb 43% [ 7/16] lib/bio/PolyploidTools/Mask.rb 50% [ 8/16] lib/bio/PolyploidTools/NoSNPSequence.rb 56% [ 9/16] lib/bio/PolyploidTools/PrimerRegion.rb 62% [10/16] lib/bio/PolyploidTools/SNP.rb 68% [11/16] lib/bio/PolyploidTools/SNPMutant.rb 75% [12/16] lib/bio/PolyploidTools/SNPSequence.rb 81% [13/16] lib/bio/db/blast.rb 87% [14/16] lib/bio/db/exonerate.rb 93% [15/16] lib/bio/db/primer3.rb 100% [16/16] lib/bioruby-polyploid-tools.rb Installing ri documentation for bio-polyploid-tools-1.2.1 Installing darkfish documentation for bio-polyploid-tools-1.2.1 Done installing documentation for bio-polyploid-tools after 1 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Iou0hp + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 ++ dirname /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 + cd bio-polyploid-tools-1.2.1 + mkdir -p /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386/usr/share/gems/ + mkdir -p /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386/usr/bin + cp -a ./usr/bin/bfr.rb ./usr/bin/blast_triads.rb ./usr/bin/blast_triads_promoters.rb ./usr/bin/count_variations.rb ./usr/bin/filter_blat_by_target_coverage.rb ./usr/bin/filter_exonerate_by_identity.rb ./usr/bin/find_best_blat_hit.rb ./usr/bin/find_best_exonerate.rb ./usr/bin/get_longest_hsp_blastx_triads.rb ./usr/bin/hexaploid_primers.rb ./usr/bin/homokaryot_primers.rb ./usr/bin/mafft_triads.rb ./usr/bin/mafft_triads_promoters.rb ./usr/bin/map_markers_to_contigs.rb ./usr/bin/marker_to_vcf.rb ./usr/bin/markers_in_region.rb ./usr/bin/mask_triads.rb ./usr/bin/polymarker.rb ./usr/bin/polymarker_capillary.rb ./usr/bin/polymarker_deletions.rb ./usr/bin/snp_position_to_polymarker.rb ./usr/bin/snps_between_bams.rb ./usr/bin/tag_stats.rb ./usr/bin/vcfLineToTable.rb ./usr/bin/vcfToPolyMarker.rb /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386/usr/bin/ + find /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386/usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin -type f + xargs chmod a+x + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2.1-1.fc36 --unique-debug-suffix -1.2.1-1.fc36.i386 --unique-debug-src-base rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bio-polyploid-tools-1.2.1 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/test_wrong_selection.sh from /bin/bash to #!/usr/bin/bash *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/test_bfr.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/test_iselect_reference.fa is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/test_iselect.csv is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/S58861868/S58861868.fa is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/S58861868/LIB1722.sam is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/S58861868/LIB1721.sam is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/S58861868/LIB1719.sam is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/test/data/S58861868/LIB1716.sam is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bioruby-polyploid-tools.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/PolyploidTools/SNPSequence.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/BIOExtensions.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/lib/bio/BFRTools.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/conf/defaults.rb is executable but has no shebang, removing executable bit mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/vcfToPolyMarker.rb from /usr/bin/env ruby to #!/usr/bin/ruby *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/vcfLineToTable.rb is executable but has no shebang, removing executable bit mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/tag_stats.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/snps_between_bams.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/snp_position_to_polymarker.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker_deletions.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker_capillary.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/polymarker.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mask_triads.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/markers_in_region.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/marker_to_vcf.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/map_markers_to_contigs.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mafft_triads_promoters.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/mafft_triads.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/homokaryot_primers.rb from /usr/bin/env ruby to #!/usr/bin/ruby *** WARNING: ./usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/hexaploid_primers.rb is executable but has empty shebang, removing executable bit mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/get_longest_hsp_blastx_triads.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/find_best_exonerate.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/find_best_blat_hit.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/filter_exonerate_by_identity.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/filter_blat_by_target_coverage.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/count_variations.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/blast_triads_promoters.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/blast_triads.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-polyploid-tools-1.2.1/bin/bfr.rb from /usr/bin/env ruby to #!/usr/bin/ruby + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ooJnAd + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/bio-polyploid-tools-1.2.1/usr/share/gems/gems/bio-polyploid-tools-1.2.1 ~/build/BUILD/bio-polyploid-tools-1.2.1 ~/build/BUILD/bio-polyploid-tools-1.2.1 + cd bio-polyploid-tools-1.2.1 + pushd ./usr/share/gems/gems/bio-polyploid-tools-1.2.1 + popd + RPM_EC=0 ++ jobs -p Processing files: rubygem-bio-polyploid-tools-1.2.1-1.fc36.noarch + exit 0 Provides: rubygem(bio-polyploid-tools) = 1.2.1 rubygem-bio-polyploid-tools = 1.2.1-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/ruby ruby(rubygems) rubygem(bio) >= 1.5.1 rubygem(bio-samtools) >= 2.6.2 rubygem(descriptive_statistics) rubygem(systemu) >= 2.5.2 Processing files: rubygem-bio-polyploid-tools-doc-1.2.1-1.fc36.noarch Provides: rubygem-bio-polyploid-tools-doc = 1.2.1-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 Wrote: /builddir/build/RPMS/rubygem-bio-polyploid-tools-1.2.1-1.fc36.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-bio-polyploid-tools-doc-1.2.1-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.9XIEnw + umask 022 + cd /builddir/build/BUILD + cd bio-polyploid-tools-1.2.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-bio-polyploid-tools-1.2.1-1.fc36.i386 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0