Mock Version: 1.4.2 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/579096-fedora-rawhide-i386/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network']printOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9a4604dd576b4194a20e2d2634f37b49', '-D', '/var/lib/mock/579096-fedora-rawhide-i386/root', '-a', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/579096-fedora-rawhide-i386/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--private-network', '--private-network']printOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '226bf01c4d1449bc981cded073fe8e46', '-D', '/var/lib/mock/579096-fedora-rawhide-i386/root', '-a', '--private-network', '--private-network', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DEzTtQ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/moose-0e12e41.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/0001-Tell-setup.py-about-the-.so-suffix-too.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0002-Make-libmoose-static-for-now.patch + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bkBoUq + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + mkdir -p build2 + pushd build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python2 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib/libhdf5_hl.so/usr/lib/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python2 (found version "2.7.13") -- Found NumPy: version "1.13.1" /usr/lib/python2.7/site-packages/numpy/core/include -- Checking for module 'python2' -- Found python2, version 2.7 Python include dir: /usr/include/python2.7 Python libraries: python2.7 Python executable: /usr/bin/python2 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Scanning dependencies of target intfire make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode/CMakeFiles/basecode.dir/DependInfo.cmake --color= Scanning dependencies of target basecode make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/consts.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 0%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Element.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Element.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdThreshIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/DataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/DataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/GlobalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/ExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/ExIF.cpp make[2]: Leaving directory 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-Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/LocalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/LocalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Finfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IzhIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 6%] Building CXX object intfire/CMakeFiles/intfire.dir/LIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/LIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/LIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/QIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/QIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/QIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 7%] Building CXX object basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SrcFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SrcFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/testIntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/testIntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 8%] Linking CXX static library libintfire.a cd 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/Msg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/Msg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/DiagonalMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/DiagonalMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/global.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SetGet.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SetGet.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 11%] Building CXX object msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wmake[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' unused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell 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-I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Binomial.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 19%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Gamma.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Gamma.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellCopy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 19%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/GammaRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/GammaRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 20%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellThreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp: In static member function 'static double Normal::aliasMethod()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp:310:50: warning: 'uniform_prime' may be used uninitialized in this function [-Wmaybe-uninitialized] v_num = (unsigned long)(d*uniform*uniform*uniform_prime); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/LoadModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 22%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/SaveModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/NormalRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/NormalRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Poisson.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Poisson.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Poisson.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/PoissonRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/PoissonRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Probability.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/RandGenerator.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/RandGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Uniform.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Uniform.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/mt19937ar.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/mt19937ar.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 25%] Linking CXX static library librandnum.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/cmake -P CMakeFiles/randnum.dir/cmake_clean_target.cmake cd 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 25%] Built target randnum make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Neutral.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Neutral.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp: In function 'void testClock()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake --color= Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 26%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SpikeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/RandSpike.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentDataHolder.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 28%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libshell.a CMakeFiles/shell.dir/Shell.cpp.o CMakeFiles/shell.dir/ShellCopy.cpp.o CMakeFiles/shell.dir/ShellThreads.cpp.o CMakeFiles/shell.dir/LoadModels.cpp.o CMakeFiles/shell.dir/SaveModels.cpp.o CMakeFiles/shell.dir/Neutral.cpp.o CMakeFiles/shell.dir/Wildcard.cpp.o CMakeFiles/shell.dir/testShell.cpp.o /usr/bin/ranlib libshell.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Built target shell make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake --color= Scanning dependencies of target moose_builtins make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannelBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security 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CMakeFiles/biophysics.dir/CaConcBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConcBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 41%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 43%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SwcSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/NMDAChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IzhikevichNrn.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/DifShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/DifShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Leakage.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility/CMakeFiles/utility.dir/DependInfo.cmake --color= Scanning dependencies of target utility make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/strutil.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/strutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object utility/CMakeFiles/utility.dir/types.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/types.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/setupenv.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/setupenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg 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-DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Annotator.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/Annotator.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 51%] Building CXX object utility/CMakeFiles/utility.dir/Vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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CMakeFiles/utility.dir/Vec.cpp.o /usr/bin/ranlib libutility.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 52%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovRateTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 53%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovGslSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 57%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Spine.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o /usr/bin/ranlib libbiophysics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Built target biophysics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml/CMakeFiles/moose_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target moose_sbml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 59%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 64%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/RateLookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 70%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActiveSetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/FastMatrixElim.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/DiffPoolVec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp: In function 'void print_gsl_mat(gsl_matrix*, const char*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf( "%s[%lu, %lu] = \n", name, m->size1, m->size2 ); ~~~~~~~~ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/testDiffusion.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/diffusion.dir/link.txt --verbose=1 /usr/bin/ar qc libdiffusion.a CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o CMakeFiles/diffusion.dir/Dsolve.cpp.o CMakeFiles/diffusion.dir/testDiffusion.cpp.o /usr/bin/ranlib libdiffusion.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Built target diffusion make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device/CMakeFiles/device.dir/DependInfo.cmake --color= Scanning dependencies of target device make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PulseGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PulseGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 79%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/DiffAmp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/RC.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/RC.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 81%] Linking CXX static library libdevice.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/cmake -P CMakeFiles/device.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/cmake -E cmake_link_script CMakeFiles/device.dir/link.txt --verbose=1 /usr/bin/ar qc libdevice.a CMakeFiles/device.dir/PulseGen.cpp.o CMakeFiles/device.dir/DiffAmp.cpp.o CMakeFiles/device.dir/PIDController.cpp.o CMakeFiles/device.dir/RC.cpp.o /usr/bin/ranlib libdevice.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 81%] Built target device make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake --color= Scanning dependencies of target benchmarks make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 82%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/benchmarks.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/benchmarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 82%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/kineticMarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 83%] Linking CXX static library libbenchmarks.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/cmake -P CMakeFiles/benchmarks.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 83%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/SteadyState.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/PoolBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/PoolBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Pool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/GraupnerBrunel2012CaPlasticitySynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/CplxEnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/testSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose/CMakeFiles/moosepython.dir/DependInfo.cmake --color= Scanning dependencies of target moosepython make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 93%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp: In function 'PyObject* moose_Id_richCompare(_Id*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:703:13: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:705:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/mfield.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/mfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/pymooseinit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/pymooseinit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/pymooseinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 95%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 97%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Copying python files to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/python /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Built target copy_python_files make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples/CMakeFiles/examples.dir/DependInfo.cmake --color= Scanning dependencies of target examples make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Building CXX object examples/CMakeFiles/examples.dir/Example.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here [-Wreorder] Example::Example() ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object examples/CMakeFiles/examples.dir/Ex.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Ex.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Ex.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Linking CXX static library libexamples.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -P CMakeFiles/examples.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/examples.dir/link.txt --verbose=1 /usr/bin/ar qc libexamples.a CMakeFiles/examples.dir/Example.cpp.o CMakeFiles/examples.dir/Ex.cpp.o /usr/bin/ranlib libexamples.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target examples make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/libmoose.dir/DependInfo.cmake --color= Scanning dependencies of target libmoose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -DMOOSE_LIB -o CMakeFiles/libmoose.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Linking CXX static library libmoose.a /usr/bin/cmake -P CMakeFiles/libmoose.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/libmoose.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose.a CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/ranlib libmoose.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target libmoose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/moose.bin.dir/DependInfo.cmake --color= Scanning dependencies of target moose.bin make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object pymoose/CMakeFiles/moosepython.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/pyconfig.h:4:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-32.h:1199:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/c++/7/i686-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/i686-redhat-linux/bits/c++config.h:533, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:260:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.7/pyconfig.h:4:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-32.h:1221:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /usr/include/c++/7/i686-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/i686-redhat-linux/bits/c++config.h:533, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:201:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object pymoose/CMakeFiles/moosepython.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/PyRun.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/PyRun.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/melement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/melement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_getattro(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:621:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_True); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:624:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_False); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_setDestField(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1394:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1396:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* setDestFinfo(ObjId, std::__cxx11::string, PyObject*, std::__cxx11::string)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1533:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1535:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_richcompare(_ObjId*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1845:17: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1847:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1869:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1871:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1874:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1876:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1879:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1881:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1497:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = short int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1500:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1503:85: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1506:93: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1509:94: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/inclmake[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' ude/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1512:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1515:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1518:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1521:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1524:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1552:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1554:80: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1559:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1567:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1569:79: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1578:101: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1580:88: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1602:73: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1623:76: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = char; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1636:78: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX static library libmoosepython.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -P CMakeFiles/moosepython.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -E cmake_link_script CMakeFiles/moosepython.dir/link.txt --verbose=1 /usr/bin/ar qc libmoosepython.a CMakeFiles/moosepython.dir/vec.cpp.o CMakeFiles/moosepython.dir/mfield.cpp.o CMakeFiles/moosepython.dir/pymooseinit.cpp.o CMakeFiles/moosepython.dir/melement.cpp.o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o CMakeFiles/moosepython.dir/PyRun.cpp.o /usr/bin/ranlib libmoosepython.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target moosepython make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/_moose.dir/DependInfo.cmake --color= Scanning dependencies of target _moose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:78: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'PyObject* to_py(void*, char)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:392:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:394:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'void init_moose()': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2768:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&IdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2778:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&ObjIdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2788:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_LookupField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2795:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_ElementField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2807:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_DestField); ^~~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:103:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:308:61: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < length; ++ii){ ~~~^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:310:72: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = short int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:312:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:314:64: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:316:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = float; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:318:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:320:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = std::__cxx11::basic_string; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:322:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = ObjId; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:324:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = Id; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:326:62: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:328:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < outerLength; ++ii){ ~~~^~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:330:70: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:332:80: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX shared module python/moose/_moose.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython2.7 -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python2 setup.py build '--executable=/usr/bin/python2 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + mkdir -p build3 + pushd build3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python3 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib/libhdf5_hl.so/usr/lib/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python3 (found version "3.6.1") -- Found NumPy: version "1.13.1" /usr/lib/python3.6/site-packages/numpy/core/include -- Checking for module 'python3' -- Found python3, version 3.6 Python include dir: /usr/include/python3.6m Python libraries: python3.6m Python executable: /usr/bin/python3 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Scanning dependencies of target intfire make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode/CMakeFiles/basecode.dir/DependInfo.cmake --color= Scanning dependencies of target basecode make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER 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[ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/ExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Eref.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Eref.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Finfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IzhIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 6%] Building CXX object intfire/CMakeFiles/intfire.dir/LIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory 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-Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SrcFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SrcFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/QIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/QIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/QIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ValueFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ValueFinfo.cpp make[2]: Leaving directory 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Built target intfire make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg/CMakeFiles/msg.dir/DependInfo.cmake --color= Scanning dependencies of target msg make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Building CXX object basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SharedFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 9%] Building CXX object msg/CMakeFiles/msg.dir/Msg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToAllMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToAllMsg.cpp make[2]: Leaving directory 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/doubleEq.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/doubleEq.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 14%] Building CXX object msg/CMakeFiles/msg.dir/SingleMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SingleMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SingleMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/SparseMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SparseMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToOneDataIndexMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wunused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Scanning dependencies of target shell make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum/CMakeFiles/randnum.dir/DependInfo.cmake --color= Scanning dependencies of target randnum make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellCopy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 19%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellThreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/LoadModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 22%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c 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randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/PoissonRng.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/UniformRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Built target randnum make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake --color= Scanning dependencies of target scheduling make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp: In function 'void testClock()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake --color= Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libshell.a CMakeFiles/shell.dir/Shell.cpp.o CMakeFiles/shell.dir/ShellCopy.cpp.o CMakeFiles/shell.dir/ShellThreads.cpp.o CMakeFiles/shell.dir/LoadModels.cpp.o CMakeFiles/shell.dir/SaveModels.cpp.o CMakeFiles/shell.dir/Neutral.cpp.o CMakeFiles/shell.dir/Wildcard.cpp.o CMakeFiles/shell.dir/testShell.cpp.o /usr/bin/ranlib libshell.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target shell make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake --color= Scanning dependencies of target moose_builtins make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SpikeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 29%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility 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builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Compartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SymCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/GapJunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/GapJunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/InputVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannelBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TableBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 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Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHGate2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHGate2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CaConcBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConcBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 40%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MgBlock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MgBlock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SwcSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/NMDAChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility/CMakeFiles/utility.dir/DependInfo.cmake --color= Scanning dependencies of target utility make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/build /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/numutil.cpp.o -c 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utility/CMakeFiles/utility.dir/Vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Vec.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 52%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh/CMakeFiles/mesh.dir/DependInfo.cmake --color= Scanning dependencies of target mesh make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/ChemCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovRateTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 54%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovGslSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Spine.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o /usr/bin/ranlib libbiophysics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Built target biophysics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/RateLookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 70%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActiveSetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/FastMatrixElim.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/DiffPoolVec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp: In function 'void print_gsl_mat(gsl_matrix*, const char*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf( "%s[%lu, %lu] = \n", name, m->size1, m->size2 ); ~~~~~~~~ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o 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make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 78%] Built target diffusion make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 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device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 79%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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CMakeFiles/benchmarks.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 82%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd 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kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReacBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReacBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Enz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Enz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o CMakeFiles/kinetics.dir/ReacBase.cpp.o CMakeFiles/kinetics.dir/Reac.cpp.o CMakeFiles/kinetics.dir/EnzBase.cpp.o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o CMakeFiles/kinetics.dir/Enz.cpp.o CMakeFiles/kinetics.dir/MMenz.cpp.o CMakeFiles/kinetics.dir/Species.cpp.o CMakeFiles/kinetics.dir/ReadKkit.cpp.o CMakeFiles/kinetics.dir/WriteKkit.cpp.o CMakeFiles/kinetics.dir/ReadCspace.cpp.o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o CMakeFiles/kinetics.dir/testKinetics.cpp.o /usr/bin/ranlib libkinetics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Built target kinetics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SynHandlerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches 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CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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&& /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c 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pymoose/CMakeFiles/moosepython.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables 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-UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here [-Wreorder] Example::Example() ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Building CXX object examples/CMakeFiles/examples.dir/Ex.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Ex.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Ex.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Linking CXX static library libexamples.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/cmake -P CMakeFiles/examples.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/examples.dir/link.txt --verbose=1 /usr/bin/ar qc libexamples.a CMakeFiles/examples.dir/Example.cpp.o CMakeFiles/examples.dir/Ex.cpp.o /usr/bin/ranlib libexamples.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 98%] Built target examples make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/SteadyState.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/libmoose.dir/DependInfo.cmake --color= Scanning dependencies of target libmoose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/_moose.dir/DependInfo.cmake --color= Scanning dependencies of target _moose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -DMOOSE_LIB -o CMakeFiles/libmoose.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX static library libmoose.a /usr/bin/cmake -P CMakeFiles/libmoose.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/libmoose.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose.a CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/ranlib libmoose.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target libmoose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/moose.bin.dir/DependInfo.cmake --color= Scanning dependencies of target moose.bin make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:103:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:308:61: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < length; ++ii){ ~~~^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:310:72: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = short int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:312:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:314:64: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:316:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = float; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:318:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:320:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = std::__cxx11::basic_string; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:322:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = ObjId; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:324:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = Id; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:326:62: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:328:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < outerLength; ++ii){ ~~~^~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:330:70: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:332:80: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX shared module python/moose/_moose.cpython-36m-i386-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.cpython-36m-i386-linux-gnu.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython3.6m -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.cpython-36m-i386-linux-gnu.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1mPN9H + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 ++ dirname /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + install -D build2/moose.bin /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build2/python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python2 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --install-lib=/usr/lib/python2.7/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/_moose.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis/_main.py to _main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/NeuroML.py to NeuroML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/NetworkML.py to NetworkML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/MorphML.py to MorphML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/ChannelML.py to ChannelML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit/visualizer.py to visualizer.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/writekkit.py to writekkit.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/verification_utils.py to verification_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/sim_utils.py to sim_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/recording.py to recording.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/print_utils.py to print_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/plot_utils.py to plot_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/optimizer_interface.py to optimizer_interface.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose_constants.py to moose_constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose_config.py to moose_config.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose.py to moose.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/methods_utils.py to methods_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/hdfutil.py to hdfutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/graphutil.py to graphutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/graph_utils.py to graph_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/alternate.py to alternate.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rmoogli.py to rmoogli.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rdesigneur.py to rdesigneur.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/main.py to main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpHiU5is.py' /usr/bin/python2 -O /tmp/tmpHiU5is.py removing /tmp/tmpHiU5is.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose-3.0.2-py2.7.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/_moose.so + popd ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build3/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --install-lib=/usr/lib/python3.6/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/_moose.cpython-36m-i386-linux-gnu.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis/_main.py to _main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/NeuroML.py to NeuroML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/NetworkML.py to NetworkML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/MorphML.py to MorphML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/ChannelML.py to ChannelML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit/visualizer.py to visualizer.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/writekkit.py to writekkit.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/verification_utils.py to verification_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/sim_utils.py to sim_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/recording.py to recording.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/print_utils.py to print_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/plot_utils.py to plot_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/optimizer_interface.py to optimizer_interface.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose_constants.py to moose_constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose_config.py to moose_config.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose.py to moose.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/methods_utils.py to methods_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/hdfutil.py to hdfutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/graphutil.py to graphutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/graph_utils.py to graph_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/constants.py to constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/alternate.py to alternate.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rmoogli.py to rmoogli.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rdesigneur.py to rdesigneur.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/util.py to util.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/main.py to main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmpdly6tqlj.py' /usr/bin/python3 /tmp/tmpdly6tqlj.py removing /tmp/tmpdly6tqlj.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose-3.0.2-py3.6.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/_moose.cpython-36m-i386-linux-gnu.so + popd ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m --build-id-seed 3.0.2-0.13.fc27.beta.2.git0e12e41 --unique-debug-suffix -3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --unique-debug-src-base moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/_moose.cpython-36m-i386-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/_moose.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose /usr/lib/rpm/sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. 7146 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/debug/usr/lib/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/debug/usr/lib/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.9VJYyw + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + checksec --file /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose WARNING: 'sysctl' not found! It's required for most checks. WARNING: 'openssl' not found! It's required for most checks. WARNING: 'ps' not found! It's required for most checks. WARNING: Not all necessary commands found. Some tests might not work! RELRO STACK CANARY NX PIE RPATH RUNPATH FORTIFY Fortified Fortifiable FILE Full RELRO Canary found NX enabled PIE enabled No RPATH No RUNPATH Yes 2 7 /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages + /usr/bin/python2 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages + /usr/bin/python3 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + exit 0 Processing files: moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xXgPK5 + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZxQp7E + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 rtld(GNU_HASH) Processing files: python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.XkBo0e + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.p9j1UO + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: python-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2.7dist(moose) = 3.0.2 python2dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libpython2.7.so.1.0 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-moose < 3.0.2-0.13.fc27.beta.2.git0e12e41 Processing files: python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HXwutM + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Jnjd4J + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: python3-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3.6dist(moose) = 3.0.2 python3dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libpython3.6m.so.1.0 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 python(abi) = 3.6 rtld(GNU_HASH) Processing files: moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Provides: moose-debuginfo = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose-debuginfo(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 Wrote: /builddir/build/RPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.7p8GlO + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + exit 0 Child return code was: 0