Warning: Permanently added '172.25.85.63' (ECDSA) to the list of known hosts. Cloning into 'moose'... Note: checking out '333c92c9defe42205c9510b584268538ecfa2d01'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 333c92c... import_srpm % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6857k 100 6857k 0 0 22.1M 0 --:--:-- --:--:-- --:--:-- 22.1M moose-0e12e41.tar.gz: OK WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(moose.spec) Config(579096-fedora-rawhide-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/579096-fedora-rawhide-i386/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Start: dnf install "Copr repository" 0% [ ] --- B/s | 0 B --:-- ETA "Copr repository" 5.0 MB/s | 360 kB 00:00 fedora 0% [ ] --- B/s | 0 B --:-- ETA fedora 0% [ ] 1.4 MB/s | 468 kB 00:35 ETA fedora 6% [= ] 1.9 MB/s | 3.5 MB 00:24 ETA fedora 50% [========== ] 6.1 MB/s | 25 MB 00:04 ETA fedora 82% [================- ] 9.1 MB/s | 42 MB 00:00 ETA fedora 24 MB/s | 50 MB 00:02 Last metadata expiration check: 0:00:00 ago on Fri 14 Jul 2017 06:32:57 PM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group redhat-rpm-config info rpm-build diffutils bzip2 unzip cpio gcc util-linux which findutils tar sed gzip shadow-utils bash grep fedora-release xz make gcc-c++ gawk coreutils patch ================================================================================ Package Arch Version Repository Size ================================================================================ Installing dependencies: audit-libs i686 2.7.7-1.fc27 fedora 110 k basesystem noarch 11-3.fc26 fedora 8.8 k bash i686 4.4.12-6.fc27 fedora 1.6 M binutils i686 2.28-9.fc27 fedora 5.9 M bzip2 i686 1.0.6-22.fc26 fedora 57 k bzip2-libs i686 1.0.6-22.fc26 fedora 44 k ca-certificates noarch 2017.2.14-2.fc27 fedora 478 k chkconfig i686 1.10-1.fc27 fedora 186 k coreutils i686 8.27-10.fc27 fedora 1.2 M coreutils-common i686 8.27-10.fc27 fedora 1.9 M cpio i686 2.12-4.fc26 fedora 267 k cpp i686 7.1.1-2.fc27 fedora 9.1 M cracklib i686 2.9.6-5.fc26 fedora 85 k crypto-policies noarch 20170606-1.git7c32281.fc27 fedora 35 k curl i686 7.54.1-2.fc27 fedora 308 k cyrus-sasl-lib i686 2.1.26-32.fc27 fedora 166 k diffutils i686 3.6-1.fc27 fedora 361 k dwz i686 0.12-3.fc26 fedora 109 k elfutils i686 0.169-3.fc27 fedora 319 k elfutils-default-yama-scope noarch 0.169-3.fc27 fedora 38 k elfutils-libelf i686 0.169-3.fc27 fedora 209 k elfutils-libs i686 0.169-3.fc27 fedora 312 k expat i686 2.2.1-2.fc27 fedora 93 k fedora-release noarch 27-0.2 fedora 25 k fedora-repos noarch 27-0.2 fedora 92 k fedora-repos-rawhide noarch 27-0.2 fedora 7.4 k fedora-rpm-macros noarch 26-2.fc26 fedora 6.5 k file i686 5.31-1.fc27 fedora 70 k file-libs i686 5.31-1.fc27 fedora 513 k filesystem i686 3.3-1.fc27 fedora 1.1 M findutils i686 1:4.6.0-12.fc27 fedora 529 k fpc-srpm-macros noarch 1.1-2.fc26 fedora 7.0 k gawk i686 4.1.4-3.fc26 fedora 1.1 M gc i686 7.6.0-4.fc27 fedora 112 k gcc i686 7.1.1-2.fc27 fedora 20 M gcc-c++ i686 7.1.1-2.fc27 fedora 11 M gdb-headless i686 8.0-17.fc27 fedora 3.5 M gdbm i686 1.13-1.fc27 fedora 159 k ghc-srpm-macros noarch 1.4.2-5.fc26 fedora 7.7 k glib2 i686 2.53.3-1.fc27 fedora 2.5 M glibc i686 2.25.90-21.fc27 fedora 4.7 M glibc-all-langpacks i686 2.25.90-21.fc27 fedora 7.0 M glibc-common i686 2.25.90-21.fc27 fedora 862 k glibc-devel i686 2.25.90-21.fc27 fedora 1.0 M glibc-headers i686 2.25.90-21.fc27 fedora 518 k gmp i686 1:6.1.2-4.fc27 fedora 276 k gnat-srpm-macros noarch 4-2.fc26 fedora 8.1 k gnupg2 i686 2.1.21-2.fc27 fedora 2.3 M gnutls i686 3.5.14-1.fc27 fedora 758 k go-srpm-macros noarch 2-8.fc26 fedora 7.7 k grep i686 3.1-1.fc27 fedora 276 k guile i686 5:2.0.14-1.fc26 fedora 3.5 M gzip i686 1.8-2.fc26 fedora 159 k info i686 6.4-2.fc27 fedora 192 k isl i686 0.16.1-1.fc26 fedora 890 k kernel-headers i686 4.13.0-0.rc0.git4.1.fc27 fedora 1.2 M keyutils-libs i686 1.5.10-1.fc27 fedora 31 k krb5-libs i686 1.15.1-14.fc27 fedora 791 k libacl i686 2.2.52-15.fc27 fedora 33 k libarchive i686 3.3.1-1.fc27 fedora 387 k libasan i686 7.1.1-2.fc27 fedora 386 k libassuan i686 2.4.3-2.fc26 fedora 77 k libatomic i686 7.1.1-2.fc27 fedora 32 k libatomic_ops i686 7.4.6-1.fc27 fedora 33 k libattr i686 2.4.47-18.fc26 fedora 23 k libbabeltrace i686 1.5.2-2.fc27 fedora 205 k libblkid i686 2.30-1.fc27 fedora 206 k libcap i686 2.25-5.fc26 fedora 53 k libcap-ng i686 0.7.8-3.fc26 fedora 29 k libcilkrts i686 7.1.1-2.fc27 fedora 71 k libcom_err i686 1.43.4-2.fc26 fedora 45 k libcrypt-nss i686 2.25.90-21.fc27 fedora 58 k libcurl i686 7.54.1-2.fc27 fedora 287 k libdb i686 5.3.28-24.fc27 fedora 805 k libdb-utils i686 5.3.28-24.fc27 fedora 147 k libfdisk i686 2.30-1.fc27 fedora 254 k libffi i686 3.1-12.fc27 fedora 33 k libgcc i686 7.1.1-2.fc27 fedora 94 k libgcrypt i686 1.7.8-1.fc27 fedora 406 k libgomp i686 7.1.1-2.fc27 fedora 198 k libgpg-error i686 1.27-1.fc27 fedora 186 k libidn2 i686 2.0.2-1.fc27 fedora 96 k libipt i686 1.6.1-2.fc27 fedora 57 k libksba i686 1.3.5-3.fc26 fedora 137 k libmetalink i686 0.1.3-2.fc26 fedora 30 k libmount i686 2.30-1.fc27 fedora 223 k libmpc i686 1.0.2-6.fc26 fedora 57 k libmpx i686 7.1.1-2.fc27 fedora 37 k libnghttp2 i686 1.24.0-1.fc27 fedora 76 k libpkgconf i686 1.3.7-1.fc27 fedora 31 k libpsl i686 0.17.0-2.fc26 fedora 48 k libpwquality i686 1.4.0-1.fc27 fedora 100 k libselinux i686 2.6-6.fc27 fedora 175 k libsemanage i686 2.6-4.fc27 fedora 156 k libsepol i686 2.6-1.fc26 fedora 308 k libsigsegv i686 2.11-1.fc26 fedora 28 k libsmartcols i686 2.30-1.fc27 fedora 163 k libssh2 i686 1.8.0-2.fc26 fedora 100 k libstdc++ i686 7.1.1-2.fc27 fedora 492 k libstdc++-devel i686 7.1.1-2.fc27 fedora 1.9 M libtasn1 i686 4.12-1.fc27 fedora 76 k libtool-ltdl i686 2.4.6-18.fc27 fedora 56 k libubsan i686 7.1.1-2.fc27 fedora 161 k libunistring i686 0.9.7-1.fc26 fedora 416 k libusbx i686 1.0.21-2.fc26 fedora 68 k libutempter i686 1.1.6-9.fc26 fedora 29 k libuuid i686 2.30-1.fc27 fedora 82 k libverto i686 0.2.6-7.fc26 fedora 21 k libxml2 i686 2.9.4-2.fc26 fedora 714 k lua-libs i686 5.3.4-3.fc27 fedora 126 k lz4-libs i686 1.7.5-4.fc27 fedora 50 k make i686 1:4.2.1-2.fc26 fedora 497 k mpfr i686 3.1.5-3.fc27 fedora 221 k ncurses i686 6.0-10.20170520.fc27 fedora 366 k ncurses-base noarch 6.0-10.20170520.fc27 fedora 77 k ncurses-libs i686 6.0-10.20170520.fc27 fedora 328 k nettle i686 3.3-2.fc26 fedora 328 k npth i686 1.5-1.fc27 fedora 24 k nspr i686 4.15.0-1.fc27 fedora 144 k nss i686 3.31.0-2.fc27 fedora 899 k nss-pem i686 1.0.3-3.fc27 fedora 79 k nss-softokn i686 3.31.0-2.fc27 fedora 413 k nss-softokn-freebl i686 3.31.0-2.fc27 fedora 220 k nss-sysinit i686 3.31.0-2.fc27 fedora 61 k nss-util i686 3.31.0-2.fc27 fedora 89 k ocaml-srpm-macros noarch 4-2.fc26 fedora 7.5 k openblas-srpm-macros noarch 2-1.fc27 fedora 6.5 k openldap i686 2.4.45-1.fc27 fedora 365 k openssl-libs i686 1:1.1.0f-5.fc27 fedora 1.2 M p11-kit i686 0.23.7-1.fc27 fedora 255 k p11-kit-trust i686 0.23.7-1.fc27 fedora 130 k pam i686 1.3.0-3.fc27 fedora 757 k patch i686 2.7.5-4.fc26 fedora 133 k pcre i686 8.41-1.fc27 fedora 204 k perl-srpm-macros noarch 1-23.fc27 fedora 9.2 k pkgconf i686 1.3.7-1.fc27 fedora 30 k pkgconf-m4 noarch 1.3.7-1.fc27 fedora 13 k pkgconf-pkg-config i686 1.3.7-1.fc27 fedora 12 k popt i686 1.16-8.fc26 fedora 60 k publicsuffix-list-dafsa noarch 20170424-1.fc27 fedora 44 k python-srpm-macros noarch 3-20.fc27 fedora 9.2 k qt5-srpm-macros noarch 5.9.0-2.fc27 fedora 8.3 k readline i686 7.0-5.fc26 fedora 215 k redhat-rpm-config noarch 64-1.fc27 fedora 61 k rpm i686 4.13.0.1-30.fc27 fedora 524 k rpm-build i686 4.13.0.1-30.fc27 fedora 154 k rpm-build-libs i686 4.13.0.1-30.fc27 fedora 133 k rpm-libs i686 4.13.0.1-30.fc27 fedora 325 k rpm-plugin-selinux i686 4.13.0.1-30.fc27 fedora 61 k sed i686 4.4-1.fc26 fedora 289 k setup noarch 2.10.5-2.fc26 fedora 174 k shadow-utils i686 2:4.3.1-3.fc26 fedora 1.2 M sqlite-libs i686 3.19.1-1.fc27 fedora 492 k system-python-libs i686 3.6.1-10.fc27 fedora 6.3 M systemd-libs i686 233-6.fc27 fedora 492 k tar i686 2:1.29-4.fc26 fedora 830 k tzdata noarch 2017b-1.fc27 fedora 420 k unzip i686 6.0-33.fc26 fedora 182 k ustr i686 1.0.4-22.fc26 fedora 98 k util-linux i686 2.30-1.fc27 fedora 2.5 M which i686 2.21-2.fc26 fedora 46 k xz i686 5.2.3-2.fc26 fedora 152 k xz-libs i686 5.2.3-2.fc26 fedora 98 k zip i686 3.0-18.fc26 fedora 269 k zlib i686 1.2.11-2.fc26 fedora 101 k Transaction Summary ================================================================================ Install 165 Packages Total download size: 119 M Installed size: 451 M Downloading Packages: (1/165): gcc-c++-7.1 0% [ ] --- B/s | 0 B --:-- ETA [MIRROR] gcc-c++-7.1.1-2.fc27.i686.rpm: Status code: 404 for http://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/g/gcc-c++-7.1.1-2.fc27.i686.rpm (1-3/165): gcc-c++-7 0% [ ] 4.6 kB/s | 298 B 439:20 ETA (1/165): diffutils-3.6-1.fc27.i686.rpm 3.0 MB/s | 361 kB 00:00 (2-3/165): shadow-ut 1% [ ] 305 kB/s | 1.5 MB 06:34 ETA (2/165): shadow-utils-4.3.1-3.fc26.i686.rpm 9.4 MB/s | 1.2 MB 00:00 (3-4/165): util-linu 1% [ ] 318 kB/s | 1.5 MB 06:18 ETA [MIRROR] gcc-c++-7.1.1-2.fc27.i686.rpm: Status code: 404 for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/g/gcc-c++-7.1.1-2.fc27.i686.rpm (3-5/165): gcc-c++-7 1% [ ] 320 kB/s | 1.5 MB 06:15 ETA (3/165): make-4.2.1-2.fc26.i686.rpm 6.8 MB/s | 497 kB 00:00 (4-5/165): util-linu 3% [- ] 742 kB/s | 3.6 MB 02:39 ETA (4/165): fedora-release-27-0.2.noarch.rpm 4.3 MB/s | 25 kB 00:00 (5-6/165): util-linu 3% [- ] 800 kB/s | 3.9 MB 02:27 ETA (5/165): util-linux-2.30-1.fc27.i686.rpm 21 MB/s | 2.5 MB 00:00 (6-7/165): sed-4.4-1 3% [- ] 957 kB/s | 4.7 MB 02:02 ETA (6/165): sed-4.4-1.fc26.i686.rpm 9.5 MB/s | 289 kB 00:00 (7-8/165): rpm-build 4% [- ] 973 kB/s | 4.8 MB 02:00 ETA [MIRROR] rpm-build-4.13.0.1-30.fc27.i686.rpm: Status code: 404 for http://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/r/rpm-build-4.13.0.1-30.fc27.i686.rpm (7-9/165): gcc-c++-7 4% [- ] 973 kB/s | 4.8 MB 02:00 ETA [MIRROR] rpm-build-4.13.0.1-30.fc27.i686.rpm: Status code: 404 for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/r/rpm-build-4.13.0.1-30.fc27.i686.rpm (7-9/165): gcc-c++-7 4% [- ] 973 kB/s | 4.8 MB 02:00 ETA (7/165): which-2.21-2.fc26.i686.rpm 762 kB/s | 46 kB 00:00 (8-9/165): rpm-build 4% [- ] 972 kB/s | 4.8 MB 02:00 ETA (8/165): patch-2.7.5-4.fc26.i686.rpm 2.3 MB/s | 133 kB 00:00 (9-10/165): rpm-buil 4% [- ] 990 kB/s | 5.0 MB 01:57 ETA [MIRROR] info-6.4-2.fc27.i686.rpm: Status code: 404 for http://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/i/info-6.4-2.fc27.i686.rpm (9-11/165): gcc-c++- 4% [- ] 994 kB/s | 5.0 MB 01:57 ETA [MIRROR] info-6.4-2.fc27.i686.rpm: Status code: 404 for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/i/info-6.4-2.fc27.i686.rpm (9-11/165): gcc-c++- 4% [- ] 993 kB/s | 5.0 MB 01:57 ETA (9/165): rpm-build-4.13.0.1-30.fc27.i686.rpm 485 kB/s | 154 kB 00:00 (10-11/165): info-6. 4% [- ] 1.0 MB/s | 5.5 MB 01:49 ETA [MIRROR] gcc-7.1.1-2.fc27.i686.rpm: Status code: 404 for http://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/g/gcc-7.1.1-2.fc27.i686.rpm (10-12/165): gcc-c++ 4% [- ] 1.0 MB/s | 5.5 MB 01:49 ETA [MIRROR] gcc-7.1.1-2.fc27.i686.rpm: Status code: 404 for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/g/gcc-7.1.1-2.fc27.i686.rpm (10-12/165): gcc-c++ 4% [- ] 1.1 MB/s | 5.7 MB 01:45 ETA (10/165): info-6.4-2.fc27.i686.rpm 483 kB/s | 192 kB 00:00 (11-12/165): gcc-7.1 7% [= ] 1.6 MB/s | 8.3 MB 01:11 ETA (11/165): unzip-6.0-33.fc26.i686.rpm 11 MB/s | 182 kB 00:00 (12-13/165): gcc-7.1 7% [=- ] 1.7 MB/s | 9.3 MB 01:02 ETA (12/165): xz-5.2.3-2.fc26.i686.rpm 9.9 MB/s | 152 kB 00:00 (13-14/165): gcc-7.1 9% [=- ] 2.1 MB/s | 11 MB 00:52 ETA (13/165): gawk-4.1.4-3.fc26.i686.rpm 31 MB/s | 1.1 MB 00:00 (14-15/165): gcc-7.1 11% [== ] 2.5 MB/s | 13 MB 00:41 ETA (14/165): gzip-1.8-2.fc26.i686.rpm 12 MB/s | 159 kB 00:00 (15-16/165): gcc-7.1 12% [== ] 2.8 MB/s | 15 MB 00:37 ETA (15/165): bash-4.4.12-6.fc27.i686.rpm 29 MB/s | 1.6 MB 00:00 (16-17/165): gcc-7.1 15% [=== ] 3.6 MB/s | 19 MB 00:27 ETA [MIRROR] redhat-rpm-config-64-1.fc27.noarch.rpm: Status code: 404 for http://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/i386/os/Packages/r/redhat-rpm-config-64-1.fc27.noarch.rpm (16-18/165): gcc-c++ 16% [=== ] 3.8 MB/s | 20 MB 00:26 ETA (16/165): gcc-c++-7.1.1-2.fc27.i686.rpm 11 MB/s | 11 MB 00:00 (17-18/165): gcc-7.1 18% [===- ] 4.2 MB/s | 22 MB 00:22 ETA (17/165): redhat-rpm-config-64-1.fc27.noarch.rp 712 kB/s | 61 kB 00:00 (18-19/165): gcc-7.1 18% [===- ] 4.3 MB/s | 22 MB 00:22 ETA (18/165): findutils-4.6.0-12.fc27.i686.rpm 7.7 MB/s | 529 kB 00:00 (19-20/165): gcc-7.1 22% [====- ] 5.1 MB/s | 27 MB 00:18 ETA (19/165): grep-3.1-1.fc27.i686.rpm 2.0 MB/s | 276 kB 00:00 (20-21/165): gcc-7.1 25% [===== ] 5.7 MB/s | 30 MB 00:15 ETA (20/165): tar-1.29-4.fc26.i686.rpm 9.1 MB/s | 830 kB 00:00 (21-22/165): gcc-7.1 26% [===== ] 5.9 MB/s | 31 MB 00:14 ETA (21/165): cpio-2.12-4.fc26.i686.rpm 3.5 MB/s | 267 kB 00:00 (22-23/165): gcc-7.1 28% [=====- ] 6.4 MB/s | 34 MB 00:13 ETA (22/165): coreutils-8.27-10.fc27.i686.rpm 14 MB/s | 1.2 MB 00:00 (23-24/165): gcc-7.1 31% [====== ] 6.9 MB/s | 37 MB 00:11 ETA (23/165): bzip2-1.0.6-22.fc26.i686.rpm 946 kB/s | 57 kB 00:00 (24-25/165): gcc-7.1 32% [======- ] 7.2 MB/s | 39 MB 00:11 ETA (24/165): gmp-6.1.2-4.fc27.i686.rpm 3.9 MB/s | 276 kB 00:00 (25-26/165): gcc-7.1 37% [=======- ] 8.3 MB/s | 45 MB 00:08 ETA (25/165): gcc-7.1.1-2.fc27.i686.rpm 22 MB/s | 20 MB 00:00 (26-27/165): glibc-2 37% [=======- ] 8.2 MB/s | 45 MB 00:08 ETA (26/165): libmpc-1.0.2-6.fc26.i686.rpm 573 kB/s | 57 kB 00:00 (27-28/165): glibc-2 38% [=======- ] 8.2 MB/s | 45 MB 00:08 ETA (27/165): glibc-2.25.90-21.fc27.i686.rpm 16 MB/s | 4.7 MB 00:00 (28-29/165): libstdc 39% [=======- ] 8.5 MB/s | 47 MB 00:08 ETA (28/165): libstdc++-7.1.1-2.fc27.i686.rpm 4.9 MB/s | 492 kB 00:00 (29-30/165): libstdc 40% [======== ] 8.6 MB/s | 48 MB 00:08 ETA (29/165): mpfr-3.1.5-3.fc27.i686.rpm 3.1 MB/s | 221 kB 00:00 (30-31/165): libstdc 40% [======== ] 8.7 MB/s | 49 MB 00:08 ETA (30/165): zlib-1.2.11-2.fc26.i686.rpm 1.3 MB/s | 101 kB 00:00 (31-32/165): libstdc 41% [======== ] 8.7 MB/s | 49 MB 00:08 ETA (31/165): libstdc++-devel-7.1.1-2.fc27.i686.rpm 8.7 MB/s | 1.9 MB 00:00 (32-33/165): audit-l 41% [======== ] 8.8 MB/s | 50 MB 00:07 ETA (32/165): audit-libs-2.7.7-1.fc27.i686.rpm 1.2 MB/s | 110 kB 00:00 (33-34/165): libacl- 41% [======== ] 8.7 MB/s | 50 MB 00:07 ETA (33/165): libacl-2.2.52-15.fc27.i686.rpm 343 kB/s | 33 kB 00:00 (34-35/165): libattr 41% [======== ] 8.7 MB/s | 50 MB 00:07 ETA (34/165): libattr-2.4.47-18.fc26.i686.rpm 298 kB/s | 23 kB 00:00 (35-36/165): libseli 41% [======== ] 8.7 MB/s | 50 MB 00:07 ETA (35/165): libselinux-2.6-6.fc27.i686.rpm 1.8 MB/s | 175 kB 00:00 (36-37/165): libsema 42% [======== ] 8.6 MB/s | 50 MB 00:07 ETA (36/165): libsemanage-2.6-4.fc27.i686.rpm 1.9 MB/s | 156 kB 00:00 (37-38/165): setup-2 42% [======== ] 8.6 MB/s | 50 MB 00:07 ETA (37/165): setup-2.10.5-2.fc26.noarch.rpm 1.8 MB/s | 174 kB 00:00 (38-39/165): libblki 42% [======== ] 8.6 MB/s | 50 MB 00:07 ETA (38/165): libblkid-2.30-1.fc27.i686.rpm 2.5 MB/s | 206 kB 00:00 (39-40/165): libcap- 42% [========- ] 8.6 MB/s | 51 MB 00:07 ETA (39/165): libcap-ng-0.7.8-3.fc26.i686.rpm 301 kB/s | 29 kB 00:00 (40-41/165): libfdis 42% [========- ] 8.5 MB/s | 51 MB 00:08 ETA (40/165): libfdisk-2.30-1.fc27.i686.rpm 3.1 MB/s | 254 kB 00:00 (41-42/165): libsmar 42% [========- ] 8.5 MB/s | 51 MB 00:07 ETA (41/165): libmount-2.30-1.fc27.i686.rpm 2.2 MB/s | 223 kB 00:00 (42-43/165): libutem 42% [========- ] 8.5 MB/s | 51 MB 00:07 ETA (42/165): libsmartcols-2.30-1.fc27.i686.rpm 2.0 MB/s | 163 kB 00:00 (43-44/165): libuuid 43% [========- ] 8.5 MB/s | 51 MB 00:07 ETA (43/165): libutempter-1.1.6-9.fc26.i686.rpm 297 kB/s | 29 kB 00:00 (44-45/165): ncurses 43% [========- ] 8.5 MB/s | 51 MB 00:08 ETA (44/165): libuuid-2.30-1.fc27.i686.rpm 1.0 MB/s | 82 kB 00:00 (45-46/165): pam-1.3 43% [========- ] 8.4 MB/s | 51 MB 00:08 ETA (45/165): ncurses-libs-6.0-10.20170520.fc27.i68 3.3 MB/s | 328 kB 00:00 (46-47/165): systemd 43% [========- ] 8.4 MB/s | 52 MB 00:07 ETA (46/165): pam-1.3.0-3.fc27.i686.rpm 8.6 MB/s | 757 kB 00:00 (47-48/165): gc-7.6. 44% [========- ] 8.5 MB/s | 52 MB 00:07 ETA (47/165): systemd-libs-233-6.fc27.i686.rpm 4.6 MB/s | 492 kB 00:00 (48-49/165): guile-2 44% [========- ] 8.6 MB/s | 53 MB 00:07 ETA (48/165): gc-7.6.0-4.fc27.i686.rpm 1.3 MB/s | 112 kB 00:00 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gcc-c++-7.1.1-2.fc27.i6 [=============== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [================ ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [================= ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [================== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [=================== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [==================== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [===================== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [====================== ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i6 [======================= ] 164/165 Installing : gcc-c++-7.1.1-2.fc27.i686 164/165 Installing : which-2.21-2.fc26.i686 [ ] 165/165 Installing : which-2.21-2.fc26.i686 [======= ] 165/165 Installing : which-2.21-2.fc26.i686 [========= ] 165/165 Installing : which-2.21-2.fc26.i686 [========== ] 165/165 Installing : which-2.21-2.fc26.i686 [============ ] 165/165 Installing : which-2.21-2.fc26.i686 [============= ] 165/165 Installing : which-2.21-2.fc26.i686 [======================= ] 165/165 Installing : which-2.21-2.fc26.i686 [======================== ] 165/165 Installing : which-2.21-2.fc26.i686 165/165 Running scriptlet: which-2.21-2.fc26.i686 165/165 Running scriptlet: fedora-release-27-0.2.noarch 165/165 Running scriptlet: filesystem-3.3-1.fc27.i686 165/165 Running scriptlet: glibc-all-langpacks-2.25.90-21.fc27.i686 165/165 Running scriptlet: guile-5:2.0.14-1.fc26.i686 165/165 Running scriptlet: rpm-4.13.0.1-30.fc27.i686 165/165 Verifying : gcc-c++-7.1.1-2.fc27.i686 1/165 Verifying : shadow-utils-2:4.3.1-3.fc26.i686 2/165 Verifying : diffutils-3.6-1.fc27.i686 3/165 Verifying : util-linux-2.30-1.fc27.i686 4/165 Verifying : make-1:4.2.1-2.fc26.i686 5/165 Verifying : fedora-release-27-0.2.noarch 6/165 Verifying : sed-4.4-1.fc26.i686 7/165 Verifying : rpm-build-4.13.0.1-30.fc27.i686 8/165 Verifying : which-2.21-2.fc26.i686 9/165 Verifying : patch-2.7.5-4.fc26.i686 10/165 Verifying : info-6.4-2.fc27.i686 11/165 Verifying : gcc-7.1.1-2.fc27.i686 12/165 Verifying : unzip-6.0-33.fc26.i686 13/165 Verifying : xz-5.2.3-2.fc26.i686 14/165 Verifying : gawk-4.1.4-3.fc26.i686 15/165 Verifying : gzip-1.8-2.fc26.i686 16/165 Verifying : bash-4.4.12-6.fc27.i686 17/165 Verifying : redhat-rpm-config-64-1.fc27.noarch 18/165 Verifying : findutils-1:4.6.0-12.fc27.i686 19/165 Verifying : grep-3.1-1.fc27.i686 20/165 Verifying : tar-2:1.29-4.fc26.i686 21/165 Verifying : cpio-2.12-4.fc26.i686 22/165 Verifying : coreutils-8.27-10.fc27.i686 23/165 Verifying : bzip2-1.0.6-22.fc26.i686 24/165 Verifying : glibc-2.25.90-21.fc27.i686 25/165 Verifying : gmp-1:6.1.2-4.fc27.i686 26/165 Verifying : libmpc-1.0.2-6.fc26.i686 27/165 Verifying : libstdc++-7.1.1-2.fc27.i686 28/165 Verifying : libstdc++-devel-7.1.1-2.fc27.i686 29/165 Verifying : mpfr-3.1.5-3.fc27.i686 30/165 Verifying : zlib-1.2.11-2.fc26.i686 31/165 Verifying : audit-libs-2.7.7-1.fc27.i686 32/165 Verifying : libacl-2.2.52-15.fc27.i686 33/165 Verifying : libattr-2.4.47-18.fc26.i686 34/165 Verifying : libselinux-2.6-6.fc27.i686 35/165 Verifying : libsemanage-2.6-4.fc27.i686 36/165 Verifying : setup-2.10.5-2.fc26.noarch 37/165 Verifying : libblkid-2.30-1.fc27.i686 38/165 Verifying : libcap-ng-0.7.8-3.fc26.i686 39/165 Verifying : libfdisk-2.30-1.fc27.i686 40/165 Verifying : libmount-2.30-1.fc27.i686 41/165 Verifying : libsmartcols-2.30-1.fc27.i686 42/165 Verifying : libutempter-1.1.6-9.fc26.i686 43/165 Verifying : libuuid-2.30-1.fc27.i686 44/165 Verifying : ncurses-libs-6.0-10.20170520.fc27.i686 45/165 Verifying : pam-1.3.0-3.fc27.i686 46/165 Verifying : systemd-libs-233-6.fc27.i686 47/165 Verifying : gc-7.6.0-4.fc27.i686 48/165 Verifying : guile-5:2.0.14-1.fc26.i686 49/165 Verifying : fedora-repos-27-0.2.noarch 50/165 Verifying : binutils-2.28-9.fc27.i686 51/165 Verifying : bzip2-libs-1.0.6-22.fc26.i686 52/165 Verifying : elfutils-0.169-3.fc27.i686 53/165 Verifying : elfutils-libelf-0.169-3.fc27.i686 54/165 Verifying : elfutils-libs-0.169-3.fc27.i686 55/165 Verifying : file-5.31-1.fc27.i686 56/165 Verifying : file-libs-5.31-1.fc27.i686 57/165 Verifying : gdb-headless-8.0-17.fc27.i686 58/165 Verifying : libcap-2.25-5.fc26.i686 59/165 Verifying : libdb-5.3.28-24.fc27.i686 60/165 Verifying : lua-libs-5.3.4-3.fc27.i686 61/165 Verifying : openssl-libs-1:1.1.0f-5.fc27.i686 62/165 Verifying : pkgconf-pkg-config-1.3.7-1.fc27.i686 63/165 Verifying : popt-1.16-8.fc26.i686 64/165 Verifying : rpm-4.13.0.1-30.fc27.i686 65/165 Verifying : rpm-build-libs-4.13.0.1-30.fc27.i686 66/165 Verifying : rpm-libs-4.13.0.1-30.fc27.i686 67/165 Verifying : xz-libs-5.2.3-2.fc26.i686 68/165 Verifying : cpp-7.1.1-2.fc27.i686 69/165 Verifying : glibc-devel-2.25.90-21.fc27.i686 70/165 Verifying : isl-0.16.1-1.fc26.i686 71/165 Verifying : libasan-7.1.1-2.fc27.i686 72/165 Verifying : libatomic-7.1.1-2.fc27.i686 73/165 Verifying : libcilkrts-7.1.1-2.fc27.i686 74/165 Verifying : libgcc-7.1.1-2.fc27.i686 75/165 Verifying : libgomp-7.1.1-2.fc27.i686 76/165 Verifying : libmpx-7.1.1-2.fc27.i686 77/165 Verifying : libubsan-7.1.1-2.fc27.i686 78/165 Verifying : filesystem-3.3-1.fc27.i686 79/165 Verifying : libsigsegv-2.11-1.fc26.i686 80/165 Verifying : readline-7.0-5.fc26.i686 81/165 Verifying : dwz-0.12-3.fc26.i686 82/165 Verifying : fedora-rpm-macros-26-2.fc26.noarch 83/165 Verifying : fpc-srpm-macros-1.1-2.fc26.noarch 84/165 Verifying : ghc-srpm-macros-1.4.2-5.fc26.noarch 85/165 Verifying : gnat-srpm-macros-4-2.fc26.noarch 86/165 Verifying : go-srpm-macros-2-8.fc26.noarch 87/165 Verifying : ocaml-srpm-macros-4-2.fc26.noarch 88/165 Verifying : openblas-srpm-macros-2-1.fc27.noarch 89/165 Verifying : perl-srpm-macros-1-23.fc27.noarch 90/165 Verifying : python-srpm-macros-3-20.fc27.noarch 91/165 Verifying : qt5-srpm-macros-5.9.0-2.fc27.noarch 92/165 Verifying : zip-3.0-18.fc26.i686 93/165 Verifying : pcre-8.41-1.fc27.i686 94/165 Verifying : coreutils-common-8.27-10.fc27.i686 95/165 Verifying : ncurses-6.0-10.20170520.fc27.i686 96/165 Verifying : basesystem-11-3.fc26.noarch 97/165 Verifying : glibc-common-2.25.90-21.fc27.i686 98/165 Verifying : libsepol-2.6-1.fc26.i686 99/165 Verifying : ustr-1.0.4-22.fc26.i686 100/165 Verifying : ncurses-base-6.0-10.20170520.fc27.noarch 101/165 Verifying : cracklib-2.9.6-5.fc26.i686 102/165 Verifying : libpwquality-1.4.0-1.fc27.i686 103/165 Verifying : libgcrypt-1.7.8-1.fc27.i686 104/165 Verifying : libgpg-error-1.27-1.fc27.i686 105/165 Verifying : lz4-libs-1.7.5-4.fc27.i686 106/165 Verifying : libatomic_ops-7.4.6-1.fc27.i686 107/165 Verifying : libffi-3.1-12.fc27.i686 108/165 Verifying : libtool-ltdl-2.4.6-18.fc27.i686 109/165 Verifying : libunistring-0.9.7-1.fc26.i686 110/165 Verifying : fedora-repos-rawhide-27-0.2.noarch 111/165 Verifying : chkconfig-1.10-1.fc27.i686 112/165 Verifying : elfutils-default-yama-scope-0.169-3.fc27.noarch 113/165 Verifying : expat-2.2.1-2.fc27.i686 114/165 Verifying : libbabeltrace-1.5.2-2.fc27.i686 115/165 Verifying : libipt-1.6.1-2.fc27.i686 116/165 Verifying : system-python-libs-3.6.1-10.fc27.i686 117/165 Verifying : ca-certificates-2017.2.14-2.fc27.noarch 118/165 Verifying : crypto-policies-20170606-1.git7c32281.fc27.noarc 119/165 Verifying : pkgconf-1.3.7-1.fc27.i686 120/165 Verifying : pkgconf-m4-1.3.7-1.fc27.noarch 121/165 Verifying : libarchive-3.3.1-1.fc27.i686 122/165 Verifying : libdb-utils-5.3.28-24.fc27.i686 123/165 Verifying : gnupg2-2.1.21-2.fc27.i686 124/165 Verifying : rpm-plugin-selinux-4.13.0.1-30.fc27.i686 125/165 Verifying : glibc-headers-2.25.90-21.fc27.i686 126/165 Verifying : tzdata-2017b-1.fc27.noarch 127/165 Verifying : glib2-2.53.3-1.fc27.i686 128/165 Verifying : gdbm-1.13-1.fc27.i686 129/165 Verifying : sqlite-libs-3.19.1-1.fc27.i686 130/165 Verifying : p11-kit-0.23.7-1.fc27.i686 131/165 Verifying : p11-kit-trust-0.23.7-1.fc27.i686 132/165 Verifying : libpkgconf-1.3.7-1.fc27.i686 133/165 Verifying : libxml2-2.9.4-2.fc26.i686 134/165 Verifying : gnutls-3.5.14-1.fc27.i686 135/165 Verifying : libassuan-2.4.3-2.fc26.i686 136/165 Verifying : libksba-1.3.5-3.fc26.i686 137/165 Verifying : libusbx-1.0.21-2.fc26.i686 138/165 Verifying : npth-1.5-1.fc27.i686 139/165 Verifying : openldap-2.4.45-1.fc27.i686 140/165 Verifying : kernel-headers-4.13.0-0.rc0.git4.1.fc27.i686 141/165 Verifying : libtasn1-4.12-1.fc27.i686 142/165 Verifying : libidn2-2.0.2-1.fc27.i686 143/165 Verifying : nettle-3.3-2.fc26.i686 144/165 Verifying : cyrus-sasl-lib-2.1.26-32.fc27.i686 145/165 Verifying : nspr-4.15.0-1.fc27.i686 146/165 Verifying : nss-3.31.0-2.fc27.i686 147/165 Verifying : nss-util-3.31.0-2.fc27.i686 148/165 Verifying : krb5-libs-1.15.1-14.fc27.i686 149/165 Verifying : libcom_err-1.43.4-2.fc26.i686 150/165 Verifying : nss-pem-1.0.3-3.fc27.i686 151/165 Verifying : nss-softokn-3.31.0-2.fc27.i686 152/165 Verifying : nss-sysinit-3.31.0-2.fc27.i686 153/165 Verifying : keyutils-libs-1.5.10-1.fc27.i686 154/165 Verifying : libverto-0.2.6-7.fc26.i686 155/165 Verifying : nss-softokn-freebl-3.31.0-2.fc27.i686 156/165 Verifying : libcrypt-nss-2.25.90-21.fc27.i686 157/165 Verifying : curl-7.54.1-2.fc27.i686 158/165 Verifying : libmetalink-0.1.3-2.fc26.i686 159/165 Verifying : glibc-all-langpacks-2.25.90-21.fc27.i686 160/165 Verifying : libcurl-7.54.1-2.fc27.i686 161/165 Verifying : libnghttp2-1.24.0-1.fc27.i686 162/165 Verifying : libpsl-0.17.0-2.fc26.i686 163/165 Verifying : libssh2-1.8.0-2.fc26.i686 164/165 Verifying : publicsuffix-list-dafsa-20170424-1.fc27.noarch 165/165 Installed: audit-libs.i686 2.7.7-1.fc27 basesystem.noarch 11-3.fc26 bash.i686 4.4.12-6.fc27 binutils.i686 2.28-9.fc27 bzip2.i686 1.0.6-22.fc26 bzip2-libs.i686 1.0.6-22.fc26 ca-certificates.noarch 2017.2.14-2.fc27 chkconfig.i686 1.10-1.fc27 coreutils.i686 8.27-10.fc27 coreutils-common.i686 8.27-10.fc27 cpio.i686 2.12-4.fc26 cpp.i686 7.1.1-2.fc27 cracklib.i686 2.9.6-5.fc26 crypto-policies.noarch 20170606-1.git7c32281.fc27 curl.i686 7.54.1-2.fc27 cyrus-sasl-lib.i686 2.1.26-32.fc27 diffutils.i686 3.6-1.fc27 dwz.i686 0.12-3.fc26 elfutils.i686 0.169-3.fc27 elfutils-default-yama-scope.noarch 0.169-3.fc27 elfutils-libelf.i686 0.169-3.fc27 elfutils-libs.i686 0.169-3.fc27 expat.i686 2.2.1-2.fc27 fedora-release.noarch 27-0.2 fedora-repos.noarch 27-0.2 fedora-repos-rawhide.noarch 27-0.2 fedora-rpm-macros.noarch 26-2.fc26 file.i686 5.31-1.fc27 file-libs.i686 5.31-1.fc27 filesystem.i686 3.3-1.fc27 findutils.i686 1:4.6.0-12.fc27 fpc-srpm-macros.noarch 1.1-2.fc26 gawk.i686 4.1.4-3.fc26 gc.i686 7.6.0-4.fc27 gcc.i686 7.1.1-2.fc27 gcc-c++.i686 7.1.1-2.fc27 gdb-headless.i686 8.0-17.fc27 gdbm.i686 1.13-1.fc27 ghc-srpm-macros.noarch 1.4.2-5.fc26 glib2.i686 2.53.3-1.fc27 glibc.i686 2.25.90-21.fc27 glibc-all-langpacks.i686 2.25.90-21.fc27 glibc-common.i686 2.25.90-21.fc27 glibc-devel.i686 2.25.90-21.fc27 glibc-headers.i686 2.25.90-21.fc27 gmp.i686 1:6.1.2-4.fc27 gnat-srpm-macros.noarch 4-2.fc26 gnupg2.i686 2.1.21-2.fc27 gnutls.i686 3.5.14-1.fc27 go-srpm-macros.noarch 2-8.fc26 grep.i686 3.1-1.fc27 guile.i686 5:2.0.14-1.fc26 gzip.i686 1.8-2.fc26 info.i686 6.4-2.fc27 isl.i686 0.16.1-1.fc26 kernel-headers.i686 4.13.0-0.rc0.git4.1.fc27 keyutils-libs.i686 1.5.10-1.fc27 krb5-libs.i686 1.15.1-14.fc27 libacl.i686 2.2.52-15.fc27 libarchive.i686 3.3.1-1.fc27 libasan.i686 7.1.1-2.fc27 libassuan.i686 2.4.3-2.fc26 libatomic.i686 7.1.1-2.fc27 libatomic_ops.i686 7.4.6-1.fc27 libattr.i686 2.4.47-18.fc26 libbabeltrace.i686 1.5.2-2.fc27 libblkid.i686 2.30-1.fc27 libcap.i686 2.25-5.fc26 libcap-ng.i686 0.7.8-3.fc26 libcilkrts.i686 7.1.1-2.fc27 libcom_err.i686 1.43.4-2.fc26 libcrypt-nss.i686 2.25.90-21.fc27 libcurl.i686 7.54.1-2.fc27 libdb.i686 5.3.28-24.fc27 libdb-utils.i686 5.3.28-24.fc27 libfdisk.i686 2.30-1.fc27 libffi.i686 3.1-12.fc27 libgcc.i686 7.1.1-2.fc27 libgcrypt.i686 1.7.8-1.fc27 libgomp.i686 7.1.1-2.fc27 libgpg-error.i686 1.27-1.fc27 libidn2.i686 2.0.2-1.fc27 libipt.i686 1.6.1-2.fc27 libksba.i686 1.3.5-3.fc26 libmetalink.i686 0.1.3-2.fc26 libmount.i686 2.30-1.fc27 libmpc.i686 1.0.2-6.fc26 libmpx.i686 7.1.1-2.fc27 libnghttp2.i686 1.24.0-1.fc27 libpkgconf.i686 1.3.7-1.fc27 libpsl.i686 0.17.0-2.fc26 libpwquality.i686 1.4.0-1.fc27 libselinux.i686 2.6-6.fc27 libsemanage.i686 2.6-4.fc27 libsepol.i686 2.6-1.fc26 libsigsegv.i686 2.11-1.fc26 libsmartcols.i686 2.30-1.fc27 libssh2.i686 1.8.0-2.fc26 libstdc++.i686 7.1.1-2.fc27 libstdc++-devel.i686 7.1.1-2.fc27 libtasn1.i686 4.12-1.fc27 libtool-ltdl.i686 2.4.6-18.fc27 libubsan.i686 7.1.1-2.fc27 libunistring.i686 0.9.7-1.fc26 libusbx.i686 1.0.21-2.fc26 libutempter.i686 1.1.6-9.fc26 libuuid.i686 2.30-1.fc27 libverto.i686 0.2.6-7.fc26 libxml2.i686 2.9.4-2.fc26 lua-libs.i686 5.3.4-3.fc27 lz4-libs.i686 1.7.5-4.fc27 make.i686 1:4.2.1-2.fc26 mpfr.i686 3.1.5-3.fc27 ncurses.i686 6.0-10.20170520.fc27 ncurses-base.noarch 6.0-10.20170520.fc27 ncurses-libs.i686 6.0-10.20170520.fc27 nettle.i686 3.3-2.fc26 npth.i686 1.5-1.fc27 nspr.i686 4.15.0-1.fc27 nss.i686 3.31.0-2.fc27 nss-pem.i686 1.0.3-3.fc27 nss-softokn.i686 3.31.0-2.fc27 nss-softokn-freebl.i686 3.31.0-2.fc27 nss-sysinit.i686 3.31.0-2.fc27 nss-util.i686 3.31.0-2.fc27 ocaml-srpm-macros.noarch 4-2.fc26 openblas-srpm-macros.noarch 2-1.fc27 openldap.i686 2.4.45-1.fc27 openssl-libs.i686 1:1.1.0f-5.fc27 p11-kit.i686 0.23.7-1.fc27 p11-kit-trust.i686 0.23.7-1.fc27 pam.i686 1.3.0-3.fc27 patch.i686 2.7.5-4.fc26 pcre.i686 8.41-1.fc27 perl-srpm-macros.noarch 1-23.fc27 pkgconf.i686 1.3.7-1.fc27 pkgconf-m4.noarch 1.3.7-1.fc27 pkgconf-pkg-config.i686 1.3.7-1.fc27 popt.i686 1.16-8.fc26 publicsuffix-list-dafsa.noarch 20170424-1.fc27 python-srpm-macros.noarch 3-20.fc27 qt5-srpm-macros.noarch 5.9.0-2.fc27 readline.i686 7.0-5.fc26 redhat-rpm-config.noarch 64-1.fc27 rpm.i686 4.13.0.1-30.fc27 rpm-build.i686 4.13.0.1-30.fc27 rpm-build-libs.i686 4.13.0.1-30.fc27 rpm-libs.i686 4.13.0.1-30.fc27 rpm-plugin-selinux.i686 4.13.0.1-30.fc27 sed.i686 4.4-1.fc26 setup.noarch 2.10.5-2.fc26 shadow-utils.i686 2:4.3.1-3.fc26 sqlite-libs.i686 3.19.1-1.fc27 system-python-libs.i686 3.6.1-10.fc27 systemd-libs.i686 233-6.fc27 tar.i686 2:1.29-4.fc26 tzdata.noarch 2017b-1.fc27 unzip.i686 6.0-33.fc26 ustr.i686 1.0.4-22.fc26 util-linux.i686 2.30-1.fc27 which.i686 2.21-2.fc26 xz.i686 5.2.3-2.fc26 xz-libs.i686 5.2.3-2.fc26 zip.i686 3.0-18.fc26 zlib.i686 1.2.11-2.fc26 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Finish: rpmbuild -bs Finish: buildsrpm INFO: Done(moose.spec) Config(child) 1 minutes 28 seconds INFO: Results and/or logs in: intermediate-srpm Finish: run INFO: unmounting tmpfs. WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(intermediate-srpm/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm) Config(579096-fedora-rawhide-i386) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/579096-fedora-rawhide-i386/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Finish: chroot init Start: build phase for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Start: build setup for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm "Copr repository" 0% [ ] --- B/s | 0 B --:-- ETA "Copr repository" 5.0 MB/s | 360 kB 00:00 fedora 0% [ ] --- B/s | 0 B --:-- ETA fedora 0% [ ] 1.3 MB/s | 482 kB 00:38 ETA fedora 4% [- ] 1.5 MB/s | 2.1 MB 00:31 ETA fedora 34% [======- ] 4.5 MB/s | 17 MB 00:07 ETA fedora 60% [============ ] 6.9 MB/s | 31 MB 00:02 ETA fedora 82% [================ ] 8.6 MB/s | 42 MB 00:01 ETA fedora 8.1 MB/s | 50 MB 00:06 Last metadata expiration check: 0:00:00 ago on Fri 14 Jul 2017 06:34:29 PM UTC. Package gcc-c++-7.1.1-2.fc27.i686 is already installed, skipping. Package make-1:4.2.1-2.fc26.i686 is already installed, skipping. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: checksec noarch 1.7.4-3.fc26 fedora 26 k cmake i686 3.8.2-1.fc27 fedora 8.2 M gsl-devel i686 2.4-1.fc27 copr_base 563 k hdf5-devel i686 1.8.18-5.fc26 fedora 925 k libsbml-devel i686 5.15.0-4.fc27 fedora 791 k muParser-devel i686 2.2.5-3.fc27 fedora 30 k ncurses-devel i686 6.0-10.20170520.fc27 fedora 518 k python2-devel i686 2.7.13-12.fc27 fedora 408 k python2-numpy i686 1:1.13.1-1.fc27 fedora 3.5 M python3-devel i686 3.6.1-10.fc27 fedora 860 k python3-numpy i686 1:1.13.1-1.fc27 fedora 3.3 M readline-devel i686 7.0-5.fc26 fedora 181 k rsync i686 3.1.2-5.fc27 fedora 402 k tinyxml-devel i686 2.6.2-12.fc26 fedora 109 k zlib-devel i686 1.2.11-2.fc26 fedora 56 k Upgrading: cpp i686 7.1.1-5.fc27 fedora 9.1 M gcc i686 7.1.1-5.fc27 fedora 20 M gcc-c++ i686 7.1.1-5.fc27 fedora 11 M libgcc i686 7.1.1-5.fc27 fedora 96 k libgomp i686 7.1.1-5.fc27 fedora 200 k libstdc++ i686 7.1.1-5.fc27 fedora 494 k libstdc++-devel i686 7.1.1-5.fc27 fedora 1.9 M Installing dependencies: atlas i686 3.10.2-16.fc26 fedora 5.9 M autoconf noarch 2.69-24.fc26 fedora 709 k automake noarch 1.15-9.fc26 fedora 695 k cmake-data noarch 3.8.2-1.fc27 fedora 1.2 M emacs-filesystem noarch 1:25.2-2.fc27 fedora 66 k groff-base i686 1.22.3-9.fc26 fedora 1.0 M gsl i686 2.4-1.fc27 copr_base 977 k hdf5 i686 1.8.18-5.fc26 fedora 1.7 M jsoncpp i686 1.8.1-3.fc27 fedora 92 k libgfortran i686 7.1.1-5.fc27 fedora 515 k libquadmath i686 7.1.1-5.fc27 fedora 258 k libsbml i686 5.15.0-4.fc27 fedora 2.1 M libuv i686 1:1.13.1-1.fc27 fedora 123 k libxml2-devel i686 2.9.4-2.fc26 fedora 1.1 M m4 i686 1.4.18-3.fc26 fedora 221 k minizip i686 1.2.11-2.fc26 fedora 41 k muParser i686 2.2.5-3.fc27 fedora 129 k ncurses-c++-libs i686 6.0-10.20170520.fc27 fedora 56 k perl i686 4:5.26.0-394.fc27 fedora 6.2 M perl-Carp noarch 1.42-393.fc27 fedora 28 k perl-Data-Dumper i686 2.167-394.fc27 fedora 56 k perl-Encode i686 4:2.91-11.fc27 fedora 1.1 M perl-Errno i686 1.28-394.fc27 fedora 69 k perl-Exporter noarch 5.72-394.fc27 fedora 32 k perl-File-Path noarch 2.14-1.fc27 fedora 36 k perl-File-Temp noarch 0.230.400-393.fc27 fedora 61 k perl-Getopt-Long noarch 1:2.50-2.fc27 fedora 61 k perl-HTTP-Tiny noarch 0.070-393.fc27 fedora 56 k perl-IO i686 1.38-394.fc27 fedora 134 k perl-MIME-Base64 i686 3.15-393.fc27 fedora 29 k perl-PathTools i686 3.67-393.fc27 fedora 88 k perl-Pod-Escapes noarch 1:1.07-393.fc27 fedora 19 k perl-Pod-Perldoc noarch 3.28-394.fc27 fedora 87 k perl-Pod-Simple noarch 1:3.35-393.fc27 fedora 211 k perl-Pod-Usage noarch 4:1.69-393.fc27 fedora 33 k perl-Scalar-List-Utils i686 3:1.48-1.fc27 fedora 66 k perl-Socket i686 4:2.024-3.fc27 fedora 56 k perl-Storable i686 1:2.62-393.fc27 fedora 86 k perl-Term-ANSIColor noarch 4.06-394.fc27 fedora 44 k perl-Term-Cap noarch 1.17-393.fc27 fedora 21 k perl-Text-ParseWords noarch 3.30-393.fc27 fedora 16 k perl-Text-Tabs+Wrap noarch 2013.0523-393.fc27 fedora 22 k perl-Thread-Queue noarch 3.12-393.fc27 fedora 22 k perl-Time-Local noarch 1:1.250-393.fc27 fedora 30 k perl-Unicode-Normalize i686 1.25-393.fc27 fedora 73 k perl-constant noarch 1.33-394.fc27 fedora 24 k perl-libs i686 4:5.26.0-394.fc27 fedora 1.6 M perl-macros i686 4:5.26.0-394.fc27 fedora 65 k perl-parent noarch 1:0.236-393.fc27 fedora 18 k perl-podlators noarch 4.09-393.fc27 fedora 114 k perl-threads i686 1:2.16-2.fc27 fedora 59 k perl-threads-shared i686 1.57-2.fc27 fedora 45 k python-rpm-macros noarch 3-20.fc27 fedora 9.6 k python2 i686 2.7.13-12.fc27 fedora 98 k python2-libs i686 2.7.13-12.fc27 fedora 6.3 M python2-nose noarch 1.3.7-13.fc26 fedora 266 k python2-pip noarch 9.0.1-10.fc27 fedora 1.8 M python2-rpm-macros noarch 3-20.fc27 fedora 9.0 k python2-setuptools noarch 36.0.1-1.fc27 fedora 595 k python3 i686 3.6.1-10.fc27 fedora 64 k python3-libs i686 3.6.1-10.fc27 fedora 1.4 M python3-pip noarch 9.0.1-10.fc27 fedora 1.7 M python3-rpm-generators noarch 4.13.0.1-2.fc27 fedora 23 k python3-rpm-macros noarch 3-20.fc27 fedora 9.0 k python3-setuptools noarch 36.0.1-1.fc27 fedora 594 k rhash i686 1.3.4-2.fc27 fedora 142 k tinyxml i686 2.6.2-12.fc26 fedora 56 k xz-devel i686 5.2.3-2.fc26 fedora 60 k Transaction Summary ================================================================================ Install 83 Packages Upgrade 7 Packages Total download size: 103 M Downloading Packages: (1/90): checksec-1.7 0% [ ] --- B/s | 0 B --:-- ETA (1/90): checksec-1.7.4-3.fc26.noarch.rpm 117 kB/s | 26 kB 00:00 (2-3/90): cmake-3.8. 0% [ ] 117 kB/s | 26 kB 14:54 ETA (2/90): hdf5-devel-1.8.18-5.fc26.i686.rpm 2.6 MB/s | 925 kB 00:00 (3-4/90): cmake-3.8. 6% [= ] 1.5 MB/s | 6.9 MB 01:04 ETA (3/90): cmake-3.8.2-1.fc27.i686.rpm 19 MB/s | 8.2 MB 00:00 (4-5/90): libsbml-de 8% [=- ] 1.9 MB/s | 9.1 MB 00:49 ETA (4/90): ncurses-devel-6.0-10.20170520.fc27.i686 18 MB/s | 518 kB 00:00 (5-6/90): libsbml-de 9% [=- ] 2.1 MB/s | 10 MB 00:43 ETA (5/90): libsbml-devel-5.15.0-4.fc27.i686.rpm 3.1 MB/s | 791 kB 00:00 (6-7/90): muParser-d 10% [== ] 2.1 MB/s | 10 MB 00:42 ETA (6/90): muParser-devel-2.2.5-3.fc27.i686.rpm 177 kB/s | 30 kB 00:00 (7-8/90): python2-nu 10% [== ] 2.1 MB/s | 10 MB 00:43 ETA (7/90): python2-numpy-1.13.1-1.fc27.i686.rpm 22 MB/s | 3.5 MB 00:00 (8-9/90): python3-de 13% [==- ] 2.8 MB/s | 14 MB 00:31 ETA (8/90): python2-devel-2.7.13-12.fc27.i686.rpm 2.2 MB/s | 408 kB 00:00 (9-10/90): python3-n 14% [==- ] 2.9 MB/s | 15 MB 00:30 ETA (9/90): python3-devel-3.6.1-10.fc27.i686.rpm 5.8 MB/s | 860 kB 00:00 (10-11/90): readline 14% [==- ] 3.0 MB/s | 15 MB 00:29 ETA (10/90): python3-numpy-1.13.1-1.fc27.i686.rpm 12 MB/s | 3.3 MB 00:00 (11-12/90): rsync-3. 17% [===- ] 3.5 MB/s | 18 MB 00:23 ETA (11/90): readline-devel-7.0-5.fc26.i686.rpm 706 kB/s | 181 kB 00:00 (12-13/90): tinyxml- 18% [===- ] 3.6 MB/s | 19 MB 00:23 ETA (12/90): rsync-3.1.2-5.fc27.i686.rpm 1.2 MB/s | 402 kB 00:00 (13-14/90): zlib-dev 18% [===- ] 3.6 MB/s | 19 MB 00:23 ETA (13/90): zlib-devel-1.2.11-2.fc26.i686.rpm 598 kB/s | 56 kB 00:00 (14-15/90): gsl-deve 18% [===- ] 3.6 MB/s | 19 MB 00:23 ETA (14/90): tinyxml-devel-2.6.2-12.fc26.i686.rpm 947 kB/s | 109 kB 00:00 (15-16/90): cmake-da 18% [===- ] 3.6 MB/s | 19 MB 00:23 ETA (15/90): jsoncpp-1.8.1-3.fc27.i686.rpm 2.6 MB/s | 92 kB 00:00 (16-17/90): cmake-da 18% [===- ] 3.6 MB/s | 19 MB 00:23 ETA (16/90): gsl-devel-2.4-1.fc27.i686.rpm 7.8 MB/s | 563 kB 00:00 (17-18/90): libuv-1. 20% [==== ] 3.9 MB/s | 21 MB 00:21 ETA (17/90): cmake-data-3.8.2-1.fc27.noarch.rpm 13 MB/s | 1.2 MB 00:00 (18-19/90): rhash-1. 20% [==== ] 3.9 MB/s | 21 MB 00:20 ETA (18/90): libuv-1.13.1-1.fc27.i686.rpm 1.9 MB/s | 123 kB 00:00 (19-20/90): hdf5-1.8 20% [==== ] 3.9 MB/s | 21 MB 00:20 ETA (19/90): rhash-1.3.4-2.fc27.i686.rpm 2.2 MB/s | 142 kB 00:00 (20-21/90): libsbml- 20% [==== ] 3.9 MB/s | 21 MB 00:20 ETA (20/90): hdf5-1.8.18-5.fc26.i686.rpm 17 MB/s | 1.7 MB 00:00 (21-22/90): libxml2- 22% [==== ] 4.2 MB/s | 23 MB 00:18 ETA (21/90): libsbml-5.15.0-4.fc27.i686.rpm 12 MB/s | 2.1 MB 00:00 (22-23/90): muParser 24% [====- ] 4.6 MB/s | 25 MB 00:16 ETA (22/90): libxml2-devel-2.9.4-2.fc26.i686.rpm 5.1 MB/s | 1.1 MB 00:00 (23-24/90): ncurses- 25% [===== ] 4.7 MB/s | 26 MB 00:16 ETA (23/90): ncurses-c++-libs-6.0-10.20170520.fc27. 1.0 MB/s | 56 kB 00:00 (24-25/90): libgfort 25% [===== ] 4.7 MB/s | 26 MB 00:16 ETA (24/90): muParser-2.2.5-3.fc27.i686.rpm 806 kB/s | 129 kB 00:00 (25-26/90): libquadm 25% [===== ] 4.7 MB/s | 26 MB 00:16 ETA (25/90): libgfortran-7.1.1-5.fc27.i686.rpm 10 MB/s | 515 kB 00:00 (26-27/90): python2- 26% [===== ] 4.8 MB/s | 27 MB 00:15 ETA (26/90): libquadmath-7.1.1-5.fc27.i686.rpm 2.9 MB/s | 258 kB 00:00 (27-28/90): python2- 26% [===== ] 4.8 MB/s | 27 MB 00:15 ETA (27/90): python2-2.7.13-12.fc27.i686.rpm 954 kB/s | 98 kB 00:00 (28-29/90): python2- 26% [===== ] 4.8 MB/s | 27 MB 00:15 ETA (28/90): python2-libs-2.7.13-12.fc27.i686.rpm 22 MB/s | 6.3 MB 00:00 (29-30/90): python2- 32% [======- ] 5.9 MB/s | 34 MB 00:11 ETA (29/90): python-rpm-macros-3-20.fc27.noarch.rpm 45 kB/s | 9.6 kB 00:00 (30-31/90): python2- 32% [======- ] 5.9 MB/s | 34 MB 00:11 ETA (30/90): python2-nose-1.3.7-13.fc26.noarch.rpm 836 kB/s | 266 kB 00:00 (31-32/90): python2- 32% [======- ] 5.8 MB/s | 34 MB 00:11 ETA (31/90): python3-rpm-generators-4.13.0.1-2.fc27 186 kB/s | 23 kB 00:00 (32-33/90): python2- 32% [======- ] 5.8 MB/s | 34 MB 00:11 ETA (32/90): python2-rpm-macros-3-20.fc27.noarch.rp 70 kB/s | 9.0 kB 00:00 (33-34/90): python3- 32% [======- ] 5.8 MB/s | 34 MB 00:11 ETA (33/90): python3-3.6.1-10.fc27.i686.rpm 401 kB/s | 64 kB 00:00 (34-35/90): python3- 33% [======- ] 5.7 MB/s | 34 MB 00:12 ETA (34/90): python3-rpm-macros-3-20.fc27.noarch.rp 88 kB/s | 9.0 kB 00:00 (35-36/90): python3- 33% [======- ] 5.7 MB/s | 34 MB 00:12 ETA (35/90): tinyxml-2.6.2-12.fc26.i686.rpm 2.6 MB/s | 56 kB 00:00 (36-37/90): python3- 33% [======- ] 5.8 MB/s | 35 MB 00:11 ETA (36/90): gsl-2.4-1.fc27.i686.rpm 19 MB/s | 977 kB 00:00 (37-38/90): python3- 35% [======= ] 6.1 MB/s | 36 MB 00:10 ETA (37/90): python3-libs-3.6.1-10.fc27.i686.rpm 8.4 MB/s | 1.4 MB 00:00 (38-39/90): automake 35% [======= ] 6.1 MB/s | 37 MB 00:10 ETA (38/90): automake-1.15-9.fc26.noarch.rpm 9.8 MB/s | 695 kB 00:00 (39-40/90): emacs-fi 36% [======= ] 6.2 MB/s | 37 MB 00:10 ETA (39/90): emacs-filesystem-25.2-2.fc27.noarch.rp 861 kB/s | 66 kB 00:00 (40-41/90): minizip- 36% [======= ] 6.1 MB/s | 37 MB 00:10 ETA (40/90): minizip-1.2.11-2.fc26.i686.rpm 527 kB/s | 41 kB 00:00 (41-42/90): xz-devel 36% [======= ] 6.1 MB/s | 37 MB 00:10 ETA (41/90): xz-devel-5.2.3-2.fc26.i686.rpm 567 kB/s | 60 kB 00:00 (42-43/90): python2- 36% [======= ] 6.1 MB/s | 37 MB 00:10 ETA (42/90): python2-pip-9.0.1-10.fc27.noarch.rpm 9.8 MB/s | 1.8 MB 00:00 (43-44/90): python2- 37% [=======- ] 6.3 MB/s | 39 MB 00:10 ETA (43/90): python2-setuptools-36.0.1-1.fc27.noarc 3.3 MB/s | 595 kB 00:00 (44-45/90): python3- 39% [=======- ] 6.5 MB/s | 40 MB 00:09 ETA (44/90): python3-setuptools-36.0.1-1.fc27.noarc 3.9 MB/s | 594 kB 00:00 (45-46/90): python3- 39% [=======- ] 6.5 MB/s | 40 MB 00:09 ETA (45/90): python3-pip-9.0.1-10.fc27.noarch.rpm 19 MB/s | 1.7 MB 00:00 (46-47/90): autoconf 40% [======== ] 6.7 MB/s | 42 MB 00:09 ETA (46/90): autoconf-2.69-24.fc26.noarch.rpm 6.2 MB/s | 709 kB 00:00 (47-48/90): perl-5.2 41% [======== ] 6.8 MB/s | 43 MB 00:08 ETA (47/90): perl-Carp-1.42-393.fc27.noarch.rpm 492 kB/s | 28 kB 00:00 (48-49/90): perl-5.2 43% [========- ] 7.1 MB/s | 44 MB 00:08 ETA (48/90): perl-Errno-1.28-394.fc27.i686.rpm 2.4 MB/s | 69 kB 00:00 (49-50/90): perl-5.2 43% [========- ] 7.2 MB/s | 44 MB 00:08 ETA (49/90): perl-Exporter-5.72-394.fc27.noarch.rpm 1.4 MB/s | 32 kB 00:00 (50-51/90): perl-5.2 43% [========- ] 7.3 MB/s | 45 MB 00:07 ETA (50/90): perl-File-Path-2.14-1.fc27.noarch.rpm 1.4 MB/s | 36 kB 00:00 (51-52/90): perl-5.2 44% [========- ] 7.4 MB/s | 46 MB 00:07 ETA (51/90): perl-Getopt-Long-2.50-2.fc27.noarch.rp 3.6 MB/s | 61 kB 00:00 (52-53/90): perl-5.2 45% [========= ] 7.5 MB/s | 46 MB 00:07 ETA (52/90): perl-IO-1.38-394.fc27.i686.rpm 9.8 MB/s | 134 kB 00:00 (53-54/90): perl-5.2 45% [========= ] 7.5 MB/s | 46 MB 00:07 ETA (53/90): perl-5.26.0-394.fc27.i686.rpm 22 MB/s | 6.2 MB 00:00 (54-55/90): perl-Pat 47% [=========- ] 7.9 MB/s | 49 MB 00:06 ETA (54/90): perl-Thread-Queue-3.12-393.fc27.noarch 193 kB/s | 22 kB 00:00 (55-56/90): perl-Pat 47% [=========- ] 7.9 MB/s | 49 MB 00:06 ETA (55/90): perl-PathTools-3.67-393.fc27.i686.rpm 663 kB/s | 88 kB 00:00 (56-57/90): perl-con 47% [=========- ] 7.9 MB/s | 49 MB 00:06 ETA (56/90): perl-constant-1.33-394.fc27.noarch.rpm 1.2 MB/s | 24 kB 00:00 (57-58/90): perl-lib 47% [=========- ] 7.9 MB/s | 49 MB 00:06 ETA (57/90): perl-threads-2.16-2.fc27.i686.rpm 1.0 MB/s | 59 kB 00:00 (58-59/90): m4-1.4.1 49% [=========- ] 8.1 MB/s | 51 MB 00:06 ETA 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gcc-c++-7.1.1-5.fc27.i686 84/97 Verifying : gcc-7.1.1-5.fc27.i686 85/97 Verifying : libstdc++-7.1.1-5.fc27.i686 86/97 Verifying : libstdc++-devel-7.1.1-5.fc27.i686 87/97 Verifying : cpp-7.1.1-5.fc27.i686 88/97 Verifying : libgcc-7.1.1-5.fc27.i686 89/97 Verifying : libgomp-7.1.1-5.fc27.i686 90/97 Verifying : libstdc++-7.1.1-2.fc27.i686 91/97 Verifying : libstdc++-devel-7.1.1-2.fc27.i686 92/97 Verifying : gcc-7.1.1-2.fc27.i686 93/97 Verifying : gcc-c++-7.1.1-2.fc27.i686 94/97 Verifying : cpp-7.1.1-2.fc27.i686 95/97 Verifying : libgcc-7.1.1-2.fc27.i686 96/97 Verifying : libgomp-7.1.1-2.fc27.i686 97/97 Installed: checksec.noarch 1.7.4-3.fc26 cmake.i686 3.8.2-1.fc27 gsl-devel.i686 2.4-1.fc27 hdf5-devel.i686 1.8.18-5.fc26 libsbml-devel.i686 5.15.0-4.fc27 muParser-devel.i686 2.2.5-3.fc27 ncurses-devel.i686 6.0-10.20170520.fc27 python2-devel.i686 2.7.13-12.fc27 python2-numpy.i686 1:1.13.1-1.fc27 python3-devel.i686 3.6.1-10.fc27 python3-numpy.i686 1:1.13.1-1.fc27 readline-devel.i686 7.0-5.fc26 rsync.i686 3.1.2-5.fc27 tinyxml-devel.i686 2.6.2-12.fc26 zlib-devel.i686 1.2.11-2.fc26 atlas.i686 3.10.2-16.fc26 autoconf.noarch 2.69-24.fc26 automake.noarch 1.15-9.fc26 cmake-data.noarch 3.8.2-1.fc27 emacs-filesystem.noarch 1:25.2-2.fc27 groff-base.i686 1.22.3-9.fc26 gsl.i686 2.4-1.fc27 hdf5.i686 1.8.18-5.fc26 jsoncpp.i686 1.8.1-3.fc27 libgfortran.i686 7.1.1-5.fc27 libquadmath.i686 7.1.1-5.fc27 libsbml.i686 5.15.0-4.fc27 libuv.i686 1:1.13.1-1.fc27 libxml2-devel.i686 2.9.4-2.fc26 m4.i686 1.4.18-3.fc26 minizip.i686 1.2.11-2.fc26 muParser.i686 2.2.5-3.fc27 ncurses-c++-libs.i686 6.0-10.20170520.fc27 perl.i686 4:5.26.0-394.fc27 perl-Carp.noarch 1.42-393.fc27 perl-Data-Dumper.i686 2.167-394.fc27 perl-Encode.i686 4:2.91-11.fc27 perl-Errno.i686 1.28-394.fc27 perl-Exporter.noarch 5.72-394.fc27 perl-File-Path.noarch 2.14-1.fc27 perl-File-Temp.noarch 0.230.400-393.fc27 perl-Getopt-Long.noarch 1:2.50-2.fc27 perl-HTTP-Tiny.noarch 0.070-393.fc27 perl-IO.i686 1.38-394.fc27 perl-MIME-Base64.i686 3.15-393.fc27 perl-PathTools.i686 3.67-393.fc27 perl-Pod-Escapes.noarch 1:1.07-393.fc27 perl-Pod-Perldoc.noarch 3.28-394.fc27 perl-Pod-Simple.noarch 1:3.35-393.fc27 perl-Pod-Usage.noarch 4:1.69-393.fc27 perl-Scalar-List-Utils.i686 3:1.48-1.fc27 perl-Socket.i686 4:2.024-3.fc27 perl-Storable.i686 1:2.62-393.fc27 perl-Term-ANSIColor.noarch 4.06-394.fc27 perl-Term-Cap.noarch 1.17-393.fc27 perl-Text-ParseWords.noarch 3.30-393.fc27 perl-Text-Tabs+Wrap.noarch 2013.0523-393.fc27 perl-Thread-Queue.noarch 3.12-393.fc27 perl-Time-Local.noarch 1:1.250-393.fc27 perl-Unicode-Normalize.i686 1.25-393.fc27 perl-constant.noarch 1.33-394.fc27 perl-libs.i686 4:5.26.0-394.fc27 perl-macros.i686 4:5.26.0-394.fc27 perl-parent.noarch 1:0.236-393.fc27 perl-podlators.noarch 4.09-393.fc27 perl-threads.i686 1:2.16-2.fc27 perl-threads-shared.i686 1.57-2.fc27 python-rpm-macros.noarch 3-20.fc27 python2.i686 2.7.13-12.fc27 python2-libs.i686 2.7.13-12.fc27 python2-nose.noarch 1.3.7-13.fc26 python2-pip.noarch 9.0.1-10.fc27 python2-rpm-macros.noarch 3-20.fc27 python2-setuptools.noarch 36.0.1-1.fc27 python3.i686 3.6.1-10.fc27 python3-libs.i686 3.6.1-10.fc27 python3-pip.noarch 9.0.1-10.fc27 python3-rpm-generators.noarch 4.13.0.1-2.fc27 python3-rpm-macros.noarch 3-20.fc27 python3-setuptools.noarch 36.0.1-1.fc27 rhash.i686 1.3.4-2.fc27 tinyxml.i686 2.6.2-12.fc26 xz-devel.i686 5.2.3-2.fc26 Upgraded: cpp.i686 7.1.1-5.fc27 gcc.i686 7.1.1-5.fc27 gcc-c++.i686 7.1.1-5.fc27 libgcc.i686 7.1.1-5.fc27 libgomp.i686 7.1.1-5.fc27 libstdc++.i686 7.1.1-5.fc27 libstdc++-devel.i686 7.1.1-5.fc27 Complete! Finish: build setup for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Start: rpmbuild moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DEzTtQ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/moose-0e12e41.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/0001-Tell-setup.py-about-the-.so-suffix-too.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0002-Make-libmoose-static-for-now.patch + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bkBoUq + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + mkdir -p build2 + pushd build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python2 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib/libhdf5_hl.so/usr/lib/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python2 (found version "2.7.13") -- Found NumPy: version "1.13.1" /usr/lib/python2.7/site-packages/numpy/core/include -- Checking for module 'python2' -- Found python2, version 2.7 Python include dir: /usr/include/python2.7 Python libraries: python2.7 Python executable: /usr/bin/python2 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Scanning dependencies of target intfire make[2]: Leaving directory 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/consts.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 0%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER 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[ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/ExIF.cpp make[2]: Leaving directory 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Finfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/LIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/LIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 7%] Building CXX object intfire/CMakeFiles/intfire.dir/QIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg/CMakeFiles/msg.dir/DependInfo.cmake --color= Scanning dependencies of target msg make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 8%] Building CXX object basecode/CMakeFiles/basecode.dir/ValueFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ValueFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ValueFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 9%] Building CXX object basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SharedFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElement.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/Msg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/Msg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Id.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Id.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/ObjId.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ObjId.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ObjId.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 10%] Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/DiagonalMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/DiagonalMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/global.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToOneMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToOneMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 14%] Building CXX object basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SingleMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SingleMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/SparseMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SparseMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wmake[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' unused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Scanning dependencies of target shell make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o 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-I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Binomial.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/BinomialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/BinomialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/Exponential.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 17%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 19%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Gamma.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Gamma.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/GammaRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/GammaRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 20%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellThreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp: In static member function 'static double Normal::aliasMethod()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp:310:50: warning: 'uniform_prime' may be used uninitialized in this function [-Wmaybe-uninitialized] v_num = (unsigned long)(d*uniform*uniform*uniform_prime); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/LoadModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 22%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/SaveModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp: In function 'void testClock()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake --color= Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 26%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SpikeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/RandSpike.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentDataHolder.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 28%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libshell.a CMakeFiles/shell.dir/Shell.cpp.o CMakeFiles/shell.dir/ShellCopy.cpp.o CMakeFiles/shell.dir/ShellThreads.cpp.o CMakeFiles/shell.dir/LoadModels.cpp.o CMakeFiles/shell.dir/SaveModels.cpp.o CMakeFiles/shell.dir/Neutral.cpp.o CMakeFiles/shell.dir/Wildcard.cpp.o CMakeFiles/shell.dir/testShell.cpp.o /usr/bin/ranlib libshell.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Built target shell make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake --color= Scanning dependencies of target moose_builtins make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 31%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Arith.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 31%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SymCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Mstring.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Mstring.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/GapJunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/GapJunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannelBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHGate.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHGate.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 38%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security 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CMakeFiles/biophysics.dir/CaConcBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConcBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 41%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 43%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SwcSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/NMDAChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IzhikevichNrn.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/DifShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/DifShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Leakage.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility/CMakeFiles/utility.dir/DependInfo.cmake --color= Scanning dependencies of target utility make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 49%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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utility/CMakeFiles/utility.dir/types.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/types.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/setupenv.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/setupenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 50%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg 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-DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Annotator.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/Annotator.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 51%] Building CXX object utility/CMakeFiles/utility.dir/Vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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CMakeFiles/utility.dir/Vec.cpp.o /usr/bin/ranlib libutility.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 52%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/ChemCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovGslSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 56%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse 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57%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o /usr/bin/ranlib libbiophysics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Built target biophysics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml/CMakeFiles/moose_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target moose_sbml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 59%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 62%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 63%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 64%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/RateLookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 68%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 70%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActiveSetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 71%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 76%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/DiffPoolVec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 75%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp: In function 'void print_gsl_mat(gsl_matrix*, const char*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf( "%s[%lu, %lu] = \n", name, m->size1, m->size2 ); ~~~~~~~~ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/testDiffusion.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/diffusion.dir/link.txt --verbose=1 /usr/bin/ar qc libdiffusion.a CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o CMakeFiles/diffusion.dir/Dsolve.cpp.o CMakeFiles/diffusion.dir/testDiffusion.cpp.o /usr/bin/ranlib libdiffusion.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Built target diffusion make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device/CMakeFiles/device.dir/DependInfo.cmake --color= Scanning dependencies of target device make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 78%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PulseGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PulseGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 79%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/DiffAmp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/RC.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/RC.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 81%] Linking CXX static library libdevice.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/cmake -P CMakeFiles/device.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/device && /usr/bin/cmake -E cmake_link_script CMakeFiles/device.dir/link.txt --verbose=1 /usr/bin/ar qc libdevice.a CMakeFiles/device.dir/PulseGen.cpp.o CMakeFiles/device.dir/DiffAmp.cpp.o CMakeFiles/device.dir/PIDController.cpp.o CMakeFiles/device.dir/RC.cpp.o /usr/bin/ranlib libdevice.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 81%] Built target device make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake --color= Scanning dependencies of target benchmarks make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 82%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/benchmarks.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/benchmarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 82%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables 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libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 83%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 85%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/PoolBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/PoolBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Pool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SynHandlerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode 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-DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/GraupnerBrunel2012CaPlasticitySynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/CplxEnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/STDPSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/testSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 91%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose/CMakeFiles/moosepython.dir/DependInfo.cmake --color= Scanning dependencies of target moosepython make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 92%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 93%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp: In function 'PyObject* moose_Id_richCompare(_Id*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:703:13: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp:705:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 94%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/mfield.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/mfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/pymooseinit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/pymooseinit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/pymooseinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 95%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 97%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Copying python files to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/python /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Built target copy_python_files make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples/CMakeFiles/examples.dir/DependInfo.cmake --color= Scanning dependencies of target examples make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f examples/CMakeFiles/examples.dir/build.make examples/CMakeFiles/examples.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 98%] Building CXX object examples/CMakeFiles/examples.dir/Example.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here [-Wreorder] Example::Example() ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object examples/CMakeFiles/examples.dir/Ex.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Ex.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Ex.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Linking CXX static library libexamples.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -P CMakeFiles/examples.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/examples.dir/link.txt --verbose=1 /usr/bin/ar qc libexamples.a CMakeFiles/examples.dir/Example.cpp.o CMakeFiles/examples.dir/Ex.cpp.o /usr/bin/ranlib libexamples.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target examples make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/libmoose.dir/DependInfo.cmake --color= Scanning dependencies of target libmoose make[2]: Leaving directory 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 99%] Building CXX object pymoose/CMakeFiles/moosepython.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/include/python2.7/pyconfig.h:4:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-32.h:1199:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/c++/7/i686-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/i686-redhat-linux/bits/c++config.h:533, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:260:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.7/pyconfig.h:4:0, from /usr/include/python2.7/Python.h:8, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:49: /usr/include/python2.7/pyconfig-32.h:1221:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /usr/include/c++/7/i686-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/i686-redhat-linux/bits/c++config.h:533, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/test_moosemodule.cpp:47: /usr/include/features.h:201:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object pymoose/CMakeFiles/moosepython.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/PyRun.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/PyRun.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [ 96%] Building CXX object pymoose/CMakeFiles/moosepython.dir/melement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/melement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:49: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_getattro(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:621:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_True); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:624:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_False); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_setDestField(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1394:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1396:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* setDestFinfo(ObjId, std::__cxx11::string, PyObject*, std::__cxx11::string)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1533:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1535:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_richcompare(_ObjId*, PyObject*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1845:17: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1847:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1869:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1871:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1874:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1876:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1879:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1881:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1497:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = short int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1500:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1503:85: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1506:93: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1509:94: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/inclmake[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' ude/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1512:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1515:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1518:87: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1521:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::__cxx11::string, PyObject*, char) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1524:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:569:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = float; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1552:86: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = double; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1554:80: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = std::__cxx11::basic_string; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1559:84: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1567:83: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1569:79: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1578:101: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = long unsigned int; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1580:88: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = Id; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1602:73: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = ObjId; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1623:76: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::__cxx11::string, PyObject*, char, A) [with A = char; PyObject = _object; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/melement.cpp:1636:78: required from here /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:687:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ~~~~~~~~~~~~~~~~~~~^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX static library libmoosepython.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -P CMakeFiles/moosepython.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/pymoose && /usr/bin/cmake -E cmake_link_script CMakeFiles/moosepython.dir/link.txt --verbose=1 /usr/bin/ar qc libmoosepython.a CMakeFiles/moosepython.dir/vec.cpp.o CMakeFiles/moosepython.dir/mfield.cpp.o CMakeFiles/moosepython.dir/pymooseinit.cpp.o CMakeFiles/moosepython.dir/melement.cpp.o CMakeFiles/moosepython.dir/test_moosemodule.cpp.o CMakeFiles/moosepython.dir/PyRun.cpp.o /usr/bin/ranlib libmoosepython.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target moosepython make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles/_moose.dir/DependInfo.cmake --color= Scanning dependencies of target _moose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' In file included from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /usr/include/python2.7/Python.h:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:78: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'PyObject* to_py(void*, char)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:392:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^~~~~~~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:394:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp: In function 'void init_moose()': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2768:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&IdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2778:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&ObjIdType); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2788:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_LookupField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2795:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_ElementField); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:2807:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_DestField); ^~~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:103:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:308:61: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < length; ++ii){ ~~~^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:310:72: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = short int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:312:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:314:64: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:316:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = float; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:318:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:320:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = std::__cxx11::basic_string; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:322:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = ObjId; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:324:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = Id; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:326:62: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:328:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < outerLength; ++ii){ ~~~^~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:330:70: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:332:80: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Linking CXX shared module python/moose/_moose.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython2.7 -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python2 setup.py build '--executable=/usr/bin/python2 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + mkdir -p build3 + pushd build3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON .. -DWITH_CURSES:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id' -DPYTHON_EXECUTABLE=/usr/bin/python3 -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.3.7") -- CMAKE_INSTALL_PREFIX : /usr -- Operating system: Linux -- The compiler /usr/bin/c++ has no C++11 support. -- Moose will be quiet -- Building for Release/No unit tests. -- Checking for module 'libsbml' -- Found libsbml, version 5.15.0 -- SBML found. Support is ON: sbml -- Checking for module 'libxml-2.0' -- Found libxml-2.0, version 2.9.4 ++ DEBUG: GSL_CONFIG_PREFER_PATH: /bin DBG GSL_CONFIG /usr/bin/gsl-config -- Using GSL from /usr -- Found HDF5: /usr/lib/libhdf5_hl.so/usr/lib/libhdf5.so -- Found HDF5-headers: /usr/include -- Found Curses: /usr/lib/libcurses.so -- Found Readline: /usr/include -- Using system gsl : -lgsl -lgslcblas -lm -- Checking for module 'muparser' -- Found muparser, version 2.2.4 Using system muparser 2.2.4 -- Checking for module 'tinyxml' -- Found tinyxml, version 2.6.2 Using system tinyxml 2.6.2 -- Building native python extension of MOOSE Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found PythonInterp: /usr/bin/python3 (found version "3.6.1") -- Found NumPy: version "1.13.1" /usr/lib/python3.6/site-packages/numpy/core/include -- Checking for module 'python3' -- Found python3, version 3.6 Python include dir: /usr/include/python3.6m Python libraries: python3.6m Python executable: /usr/bin/python3 ======================================= Now run 'make' to build MOOSE ======================================= -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR WITH_CURSES -- Build files have been written to: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 -B/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/progress.marks /usr/bin/make -f 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/consts.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 0%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Element.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Element.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/AdThreshIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/DataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DataElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/DataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/ExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Eref.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Eref.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Finfo.cpp make[2]: Leaving directory 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basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/Cinfo.cpp make[2]: Leaving directory 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/ValueFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/ValueFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Linking CXX static library libintfire.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/cmake -P CMakeFiles/intfire.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/intfire && /usr/bin/cmake -E cmake_link_script CMakeFiles/intfire.dir/link.txt --verbose=1 /usr/bin/ar qc libintfire.a CMakeFiles/intfire.dir/AdExIF.cpp.o CMakeFiles/intfire.dir/AdThreshIF.cpp.o CMakeFiles/intfire.dir/ExIF.cpp.o CMakeFiles/intfire.dir/IntFireBase.cpp.o CMakeFiles/intfire.dir/IzhIF.cpp.o CMakeFiles/intfire.dir/LIF.cpp.o CMakeFiles/intfire.dir/QIF.cpp.o CMakeFiles/intfire.dir/testIntFire.cpp.o /usr/bin/ranlib libintfire.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Built target intfire make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg/CMakeFiles/msg.dir/DependInfo.cmake --color= Scanning dependencies of target msg make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 8%] Building CXX object basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SharedFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElementFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 10%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/FieldElement.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/FieldElement.cpp make[2]: 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToAllMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/OneToAllMsg.cpp make[2]: Leaving directory 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/SparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/SparseMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:56:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCreateMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:111:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( i1, ac, "test1", size ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrSet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:195:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strSet( ObjId( i2, 0 ), "name", "NewImprovedTest" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testStrGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:274:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = SetGet::strGet( oid, "name", val ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetSynapse()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:356:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( handler, "numSynapse", ns ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSendSpike()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:464:9: warning: variable 'Vm' set but not used [-Wunused-but-set-variable] double Vm = reinterpret_cast< IntFire* >(e2.data())->getVm(); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSparseMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:826:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::setVec( cells, "Vm", temp ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetRepeat()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:948:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< unsigned int >::setVec( cell, "numSynapse", numSyn); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSharedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1057:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable] Element* temp = new GlobalDataElement( t1, Test::initCinfo(), "test1", 1 ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1239:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] Element* ret = new GlobalDataElement( i1, ac, "test1", size ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1269:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = reinterpret_cast< Arith* >( tgt3.data() )->getOutput(); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testSetGetExtField()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1347:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] double v = reinterpret_cast< Arith* >(a.data() )->getOutput(); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1365:10: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = Field< double >::get( a, "x" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1315:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testLookupSetGet()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1420:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] double ret = LookupField< unsigned int, double >::get( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testFinfoFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1452:21: warning: variable 'vmFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper vmFinfo = IntFire::initCinfo()->findFinfo( "Vm" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1453:21: warning: variable 'synFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper synFinfo = SimpleSynHandler::initCinfo()->findFinfo( "synapse" ); ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1454:21: warning: variable 'procFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper procFinfo = IntFire::initCinfo()->findFinfo( "proc" ); ^~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1455:21: warning: variable 'processFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper processFinfo = IntFire::initCinfo()->findFinfo( "process" ); ^~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1456:21: warning: variable 'reinitFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper reinitFinfo = IntFire::initCinfo()->findFinfo( "reinit" ); ^~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1457:21: warning: variable 'spikeFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper spikeFinfo = IntFire::initCinfo()->findFinfo( "spikeOut" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1458:21: warning: variable 'classNameFinfo' set but not used [-Wunused-but-set-variable] const FinfoWrapper classNameFinfo = Neutral::initCinfo()->findFinfo( "className" ); ^~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testCinfoElements()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1589:15: warning: variable 'n' set but not used [-Wunused-but-set-variable] unsigned int n = Field< unsigned int >::get( ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testMsgSrcDestFields()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1727:15: warning: variable 'numTgt' set but not used [-Wunused-but-set-variable] unsigned int numTgt = e1->getMsgTargetAndFunctions( 0, ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp: In function 'void testHopFunc()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/testAsync.cpp:1779:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] const char* c = reinterpret_cast< const char* >( ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Scanning dependencies of target shell make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp: In function 'void testAssortedMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg/testMsg.cpp:44:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum/CMakeFiles/randnum.dir/DependInfo.cmake --color= Scanning dependencies of target randnum make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Exponential.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 16%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:10: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp: In instantiation of 'std::__cxx11::string mapToString(const std::map&, bool) [with A = std::__cxx11::basic_string; B = Finfo*; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Shell.cpp:328:90: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:93:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < colums) ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellCopy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 18%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/ExponentialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 19%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/ShellThreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/LoadModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 22%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp: In static member function 'static double Normal::aliasMethod()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/Normal.cpp:310:50: warning: 'uniform_prime' may be used uninitialized in this function [-Wmaybe-uninitialized] v_num = (unsigned long)(d*uniform*uniform*uniform_prime); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 21%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/SaveModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 22%] Building CXX object randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security 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randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/PoissonRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/PoissonRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Probability.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Neutral.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Neutral.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/UniformRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/mt19937ar.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/randnum/mt19937ar.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Linking CXX static library librandnum.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/cmake -P CMakeFiles/randnum.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/randnum && /usr/bin/cmake -E cmake_link_script CMakeFiles/randnum.dir/link.txt --verbose=1 /usr/bin/ar qc librandnum.a CMakeFiles/randnum.dir/Binomial.cpp.o CMakeFiles/randnum.dir/BinomialRng.cpp.o CMakeFiles/randnum.dir/Exponential.cpp.o CMakeFiles/randnum.dir/ExponentialRng.cpp.o CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Built target randnum make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake --color= Scanning dependencies of target scheduling make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 25%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp: In function 'void testWildcard()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:590:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = alignedSingleWildcardMatch( "a123456", "a123" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/Wildcard.cpp:605:15: warning: variable 'j' set but not used [-Wunused-but-set-variable] unsigned int j = findWithSingleCharWildcard( "a12345678", 0, "a123" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 26%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp: In function 'void testClock()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/scheduling/testScheduling.cpp:86:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< double >::set( clock, "baseDt", 1.0); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake --color= Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 27%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyFieldElement()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:464:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testObjIdToAndFromPath()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:571:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable] double wt = Field< double >::get( origSynObj, "weight" ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testShellAddMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:998:10: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( ObjId( a1, i ), "arg1Value" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:896:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet3< unsigned int, unsigned int, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:945:15: warning: variable 'numTgts' set but not used [-Wunused-but-set-variable] unsigned int numTgts = clock.eref().element()->getNeighbors( tgts, sf ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:976:9: warning: variable 'val' set but not used [-Wunused-but-set-variable] double val = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testCopyMsgOps()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1114:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = 0; ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testExtractIndices()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1261:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = extractIndex( "foo", ret ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFindModelParent()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1401:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok = findModelParent( zod, "", parentId, modelName ); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp: In function 'void testFilterOffNodeTargets()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/shell/testShell.cpp:1748:17: warning: variable 'sz' set but not used [-Wunused-but-set-variable] unsigned int sz = 0; ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libshell.a CMakeFiles/shell.dir/Shell.cpp.o CMakeFiles/shell.dir/ShellCopy.cpp.o CMakeFiles/shell.dir/ShellThreads.cpp.o CMakeFiles/shell.dir/LoadModels.cpp.o CMakeFiles/shell.dir/SaveModels.cpp.o CMakeFiles/shell.dir/Neutral.cpp.o CMakeFiles/shell.dir/Wildcard.cpp.o CMakeFiles/shell.dir/testShell.cpp.o /usr/bin/ranlib libshell.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Built target shell make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake --color= Scanning dependencies of target moose_builtins make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SpikeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 29%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Arith.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/RandSpike.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentDataHolder.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 31%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Mstring.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Mstring.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CompartmentBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Compartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SymCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 32%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.h:50, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:51: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Func.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/GapJunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/GapJunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ChanCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:53: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:50: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Variable.cpp:48: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/InputVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannelBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TableBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/HHChannel2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 37%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 39%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 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CMakeFiles/biophysics.dir/CaConcBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/CaConcBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 40%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 41%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDoubleDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:115:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createStringDataset(hid_t, std::__cxx11::string, hsize_t, hsize_t)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:145:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In member function 'hid_t HDF5WriterBase::createDataset2D(hid_t, std::__cxx11::string, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:221:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] hid_t prev = file, current; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 42%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Neuron.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createUniformMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:273:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::createEventMap()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:360:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'hid_t NSDFWriter::getEventDataset(std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:432:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'virtual void NSDFWriter::flush()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:483:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sget_simple_extent_dims(filespace, dims, maxdims); ^~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp: In member function 'void NSDFWriter::writeModelTree()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/NSDFWriter.cpp:638:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/SwcSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp: In member function 'hid_t HDF5DataWriter::getDataset(std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/HDF5DataWriter.cpp:255:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Eset_auto2(H5E_DEFAULT, NULL, NULL); ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse 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45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/SpikeStats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode 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Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/testBiophysics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 46%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:79:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = outFinfo->addMsg( arg1Finfo, dm1->mid(), a1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testMpiFibonacci()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:149:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = Field< int >::set( mid1, "stride", 1 ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testGetMsg()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:291:15: warning: variable 'numEntries' set but not used [-Wunused-but-set-variable] unsigned int numEntries = Field< unsigned int >::get( tabid, "size" ); ^~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp: In function 'void testStats()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:384:9: warning: variable 'mean' set but not used [-Wunused-but-set-variable] double mean = Field< double >::get( stat1, "mean" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:385:9: warning: variable 'sdev' set but not used [-Wunused-but-set-variable] double sdev = Field< double >::get( stat1, "sdev" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:386:9: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = Field< double >::get( stat1, "sum" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:387:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = Field< unsigned int >::get( stat1, "num" ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:388:9: warning: variable 'wmean' set but not used [-Wunused-but-set-variable] double wmean = Field< double >::get( stat1, "wmean" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:389:9: warning: variable 'wsdev' set but not used [-Wunused-but-set-variable] double wsdev = Field< double >::get( stat1, "wsdev" ); ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:390:9: warning: variable 'wsum' set but not used [-Wunused-but-set-variable] double wsum = Field< double >::get( stat1, "wsum" ); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testBuiltins.cpp:391:15: warning: variable 'wnum' set but not used [-Wunused-but-set-variable] unsigned int wnum = Field< unsigned int >::get( stat1, "wnum" ); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp: In function 'void testCreateStringDataset()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * data[STR_DSET_LEN] = {"You have to", "live", "life", "to the limit"}; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:71:79: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/builtins/testNSDF.cpp:74:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 48%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/numutil.cpp.o -c 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utility/CMakeFiles/utility.dir/Vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/utility && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Vec.cpp.o -c 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 52%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh/CMakeFiles/mesh.dir/DependInfo.cmake --color= Scanning dependencies of target mesh make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 51%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/ChemCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 53%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovRateTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 54%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 56%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp: In member function 'Vector* MarkovSolverBase::bilinearInterpolate() const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:401:10: warning: 'state11' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state11; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:399:10: warning: 'state10' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state10; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolverBase.cpp:397:10: warning: 'state01' may be used uninitialized in this function [-Wmaybe-uninitialized] delete state01; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 57%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../synapse -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/biophysics/Spine.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o /usr/bin/ranlib libbiophysics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 59%] Built target biophysics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml/CMakeFiles/moose_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target moose_sbml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f sbml/CMakeFiles/moose_sbml.dir/build.make sbml/CMakeFiles/moose_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/NeuroMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 60%] Building CXX object sbml/CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp: In member function 'void moose::SbmlWriter::createModel(std::__cxx11::string, SBMLDocument&, std::__cxx11::string)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:338:1: warning: value computed is not used [-Wunused-value] + sp->setConstant(true); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:286:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:393:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:15: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:493:17: warning: variable 'y' set but not used [-Wunused-but-set-variable] double x,y; ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/sbml/MooseSbmlWriter.cpp:494:13: warning: variable 'enzAnnoexist' set but not used [-Wunused-but-set-variable] bool enzAnnoexist = false; ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Linking CXX static library libmoose_sbml.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -P CMakeFiles/moose_sbml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/sbml && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_sbml.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_sbml.a CMakeFiles/moose_sbml.dir/MooseSbmlReader.cpp.o CMakeFiles/moose_sbml.dir/MooseSbmlWriter.cpp.o /usr/bin/ranlib libmoose_sbml.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Built target moose_sbml make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake --color= Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 62%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 61%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testCubeMeshExtendStencil()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:755:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = cm0.getStencilRow( 0, &entry, &colIndex ); ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp: In function 'void testReMesh()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:798:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] bool ret = SetGet2< double, unsigned int >::set( ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:809:9: warning: variable 'linsize' set but not used [-Wunused-but-set-variable] double linsize = Field< double >::get( pool, "volume" ); ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/mesh/testMesh.cpp:814:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( pool, "n" ); ^ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 63%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake --color= Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins/Function.h:51, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieFunction.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:14: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieReac.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieEnz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:13: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp: In member function 'virtual void ZombieMMenz::setSolver(Id, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombieMMenz.cpp:155:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = enzId.element()->getNeighbors( enzvec, enzFinfo ); ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 67%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/RateLookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPoolsBase.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 69%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 70%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:20: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/VoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:11: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/GssaVoxelPools.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 71%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveActiveSetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:33, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) ^~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' temp.clear(); ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:16: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Stoich.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake --color= Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 76%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/DiffPoolVec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 74%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:24: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Ksolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyState.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:25: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp: In function 'void print_gsl_mat(gsl_matrix*, const char*)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf( "%s[%lu, %lu] = \n", name, m->size1, m->size2 ); ~~~~~~~~ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/SteadyState.cpp:508:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 77%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/diffusion && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o 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make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 78%] Built target diffusion make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 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device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 79%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/device && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 81%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/benchmarks/kineticMarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 82%] Linking CXX static library libbenchmarks.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks && /usr/bin/cmake -P CMakeFiles/benchmarks.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/benchmarks && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 82%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 83%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReacBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReacBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Enz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Enz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:260:2: warning: multi-line comment [-Wcomment] //simobjdump kpool DiffConst CoInit Co n nInit mwt nMin vol slave_enable \ ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::__cxx11::string, std::__cxx11::string, double, double)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:280:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:282:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ( pos == string::npos ) ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeGroup(std::ofstream&, Id)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:491:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != -1) ~~~~^~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp: In function 'void writeKkit(Id, const string&)': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/WriteKkit.cpp:528:22: warning: variable 'dims_size' set but not used [-Wunused-but-set-variable] unsigned int dims_size; ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp: In member function 'void ReadCspace::testReadModel()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:376:9: warning: variable 'concInit' set but not used [-Wunused-but-set-variable] double concInit; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:412:9: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r1 = Field< double >::get( tempA, "Kf"); ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/ReadCspace.cpp:413:9: warning: variable 'r2' set but not used [-Wunused-but-set-variable] double r2 = Field< double >::get( tempA, "Kb"); ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testPoolVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:73:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] double n = Field< double >::get( poolId, "n" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testReacVolumeScaling()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:120:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] double x = Field< double >::get( reacId, "kf" ); ^ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp: In function 'void testTwoReacGetNeighbors()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/kinetics/testKinetics.cpp:172:15: warning: variable 'num' set but not used [-Wunused-but-set-variable] unsigned int num = reacId.element()->getNeighbors( pools, ^~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o CMakeFiles/kinetics.dir/ReacBase.cpp.o CMakeFiles/kinetics.dir/Reac.cpp.o CMakeFiles/kinetics.dir/EnzBase.cpp.o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o CMakeFiles/kinetics.dir/Enz.cpp.o CMakeFiles/kinetics.dir/MMenz.cpp.o CMakeFiles/kinetics.dir/Species.cpp.o CMakeFiles/kinetics.dir/ReadKkit.cpp.o CMakeFiles/kinetics.dir/WriteKkit.cpp.o CMakeFiles/kinetics.dir/ReadCspace.cpp.o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o CMakeFiles/kinetics.dir/testKinetics.cpp.o /usr/bin/ranlib libkinetics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 89%] Built target kinetics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall 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'/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/Synapse.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/Synapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 92%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode 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CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/synapse && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/synapse/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable 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CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 93%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose/CMakeFiles/moosepython.dir/DependInfo.cmake --color= Scanning dependencies of target moosepython make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f pymoose/CMakeFiles/moosepython.dir/build.make pymoose/CMakeFiles/moosepython.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 94%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../msg -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moosepython.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 94%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/pymoose && /usr/bin/c++ -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/../basecode 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-UDO_UNIT_TESTS -O3 -o CMakeFiles/examples.dir/Example.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:2:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h: In constructor 'Example::Example()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:8:16: warning: 'Example::output_' will be initialized after [-Wreorder] double output_; ^~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.h:6:16: warning: 'double Example::x_' [-Wreorder] double x_; ^~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/examples/Example.cpp:92:1: warning: when initialized here 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-I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:17: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp: In member function 'void Gsolve::makeReacDepsUnique()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/Gsolve.cpp:772:36: warning: variable 'k' set but not used [-Wunused-but-set-variable] vector< unsigned int >::iterator k = dep.begin(); ^ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/FuncTerm.h:13, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:23: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/ZombiePoolInterface.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [ 99%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../builtins -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../basecode -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../utility -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/.. -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../mesh -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserStack.h:35:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:39, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pCallback; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParser.h:32:0, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:12: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/../external/muparser/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/../external/debug/print_function.hpp:32, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/header.h:14, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp: In function 'void testFuncTerm()': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/ksolve/testKsolve.cpp:312:9: warning: variable 'ans' set but not used [-Wunused-but-set-variable] double ans = ft( args, 2.0 ); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/SteadyState.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/libmoose.dir/DependInfo.cmake --color= Scanning dependencies of target libmoose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/_moose.dir/DependInfo.cmake --color= Scanning dependencies of target _moose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/_moose.dir/build.make CMakeFiles/_moose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -DMOOSE_LIB -o CMakeFiles/libmoose.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX static library libmoose.a /usr/bin/cmake -P CMakeFiles/libmoose.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/libmoose.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose.a CMakeFiles/libmoose.dir/basecode/main.cpp.o /usr/bin/ranlib libmoose.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target libmoose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' cd /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles/moose.bin.dir/DependInfo.cmake --color= Scanning dependencies of target moose.bin make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o /usr/bin/c++ -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -DUSE_SBML -D_moose_EXPORTS -I/usr/include/libxml2 -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/msg -I/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/basecode -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -UDO_UNIT_TESTS -O3 -o CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' In file included from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:81: /usr/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:103:0: /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:308:61: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < length; ++ii){ ~~~^~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:310:72: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = short int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:312:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:314:64: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = long unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:316:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = float; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:318:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:320:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = std::__cxx11::basic_string; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:322:66: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = ObjId; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:324:65: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector* PySequenceToVector(PyObject*, char) [with T = Id; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:326:62: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:330:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = double; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:328:73: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int ii = 0; ii < outerLength; ++ii){ ~~~^~~~~~~~~~~~~ /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:330:70: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h: In instantiation of 'std::vector >* PySequenceToVectorOfVectors(PyObject*, char) [with T = unsigned int; PyObject = _object]': /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.cpp:332:80: required from here /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/pymoose/moosemodule.h:359:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -rdynamic CMakeFiles/moose.bin.dir/basecode/main.cpp.o -o moose.bin -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 libmoose.a -Wl,--whole-archive builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target moose.bin make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[2]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Linking CXX shared module python/moose/_moose.cpython-36m-i386-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--build-id -shared -o python/moose/_moose.cpython-36m-i386-linux-gnu.so CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o -L/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3 -Wl,--whole-archive pymoose/libmoosepython.a builtins/libmoose_builtins.a msg/libmsg.a benchmarks/libbenchmarks.a shell/libshell.a randnum/librandnum.a scheduling/libscheduling.a mpi/libmoose_mpi.a biophysics/libbiophysics.a utility/libutility.a kinetics/libkinetics.a synapse/libsynapse.a intfire/libintfire.a hsolve/libhsolve.a mesh/libmesh.a signeur/libsigneur.a diffusion/libdiffusion.a ksolve/libksolve.a device/libdevice.a basecode/libbasecode.a sbml/libmoose_sbml.a -Wl,--no-whole-archive -lpython3.6m -lxml2 -lhdf5_hl -lhdf5 -lsbml -lgsl -lgslcblas -lm -lmuparser -ltinyxml make[2]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' make[1]: Entering directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' [100%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/libmumbl copying libmumbl/__init__.py -> build/lib/libmumbl copying libmumbl/main.py -> build/lib/libmumbl copying libmumbl/util.py -> build/lib/libmumbl creating build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur creating build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/sim_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/verification_utils.py -> build/lib/moose copying moose/writekkit.py -> build/lib/moose creating build/lib/moose/kkit copying moose/kkit/__init__.py -> build/lib/moose/kkit copying moose/kkit/visualizer.py -> build/lib/moose/kkit creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml creating build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis copying moose/genesis/_main.py -> build/lib/moose/genesis copying moose/_moose.cpython-36m-i386-linux-gnu.so -> build/lib/moose + sleep 1 ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1mPN9H + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 ++ dirname /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + install -D build2/moose.bin /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build2/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build2/python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python2 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --install-lib=/usr/lib/python2.7/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/_moose.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis/_main.py to _main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/genesis/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/NeuroML.py to NeuroML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/NetworkML.py to NetworkML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/MorphML.py to MorphML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/neuroml/ChannelML.py to ChannelML.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit/visualizer.py to visualizer.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/kkit/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/writekkit.py to writekkit.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/verification_utils.py to verification_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/utils.py to utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/sim_utils.py to sim_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/recording.py to recording.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/print_utils.py to print_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/plot_utils.py to plot_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/optimizer_interface.py to optimizer_interface.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose_constants.py to moose_constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose_config.py to moose_config.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/moose.py to moose.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/methods_utils.py to methods_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/hdfutil.py to hdfutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/graphutil.py to graphutil.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/graph_utils.py to graph_utils.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/alternate.py to alternate.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rmoogli.py to rmoogli.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/rdesigneur.py to rdesigneur.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/rdesigneur/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/main.py to main.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/libmumbl/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpHiU5is.py' /usr/bin/python2 -O /tmp/tmpHiU5is.py removing /tmp/tmpHiU5is.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose-3.0.2-py2.7.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/_moose.so + popd ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + pushd build3/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8/build3/python ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686 -fasynchronous-unwind-tables' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --install-lib=/usr/lib/python3.6/site-packages running install running install_lib creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6 creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/_moose.cpython-36m-i386-linux-gnu.so -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/_main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/visualizer.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/kkit/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit copying build/lib/moose/writekkit.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/verification_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/sim_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur creating /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/util.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/main.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl copying build/lib/libmumbl/__init__.py -> /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis/_main.py to _main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/genesis/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/NeuroML.py to NeuroML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/NetworkML.py to NetworkML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/MorphML.py to MorphML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/neuroml/ChannelML.py to ChannelML.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit/visualizer.py to visualizer.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/kkit/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/writekkit.py to writekkit.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/verification_utils.py to verification_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/utils.py to utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/sim_utils.py to sim_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/recording.py to recording.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/print_utils.py to print_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/plot_utils.py to plot_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/optimizer_interface.py to optimizer_interface.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose_constants.py to moose_constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose_config.py to moose_config.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/moose.py to moose.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/methods_utils.py to methods_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/hdfutil.py to hdfutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/graphutil.py to graphutil.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/graph_utils.py to graph_utils.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/constants.py to constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/alternate.py to alternate.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rmoogli.py to rmoogli.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/rdesigneur.py to rdesigneur.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/rdesigneur/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/util.py to util.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/main.py to main.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/libmumbl/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmpdly6tqlj.py' /usr/bin/python3 /tmp/tmpdly6tqlj.py removing /tmp/tmpdly6tqlj.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose-3.0.2-py3.6.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/_moose.cpython-36m-i386-linux-gnu.so + popd ~/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m --build-id-seed 3.0.2-0.13.fc27.beta.2.git0e12e41 --unique-debug-suffix -3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --unique-debug-src-base moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages/moose/_moose.cpython-36m-i386-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages/moose/_moose.so extracting debug info from /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose /usr/lib/rpm/sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. 7146 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/debug/usr/lib/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/debug/usr/lib/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.9VJYyw + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + checksec --file /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose WARNING: 'sysctl' not found! It's required for most checks. WARNING: 'openssl' not found! It's required for most checks. WARNING: 'ps' not found! It's required for most checks. WARNING: Not all necessary commands found. Some tests might not work! RELRO STACK CANARY NX PIE RPATH RUNPATH FORTIFY Fortified Fortifiable FILE Full RELRO  Canary found  NX enabled  PIE enabled  No RPATH  No RUNPATH  Yes 2 7 /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/bin/moose + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python2.7/site-packages + /usr/bin/python2 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + PYTHONPATH=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/lib/python3.6/site-packages + /usr/bin/python3 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + exit 0 Processing files: moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xXgPK5 + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZxQp7E + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 rtld(GNU_HASH) Processing files: python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.XkBo0e + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.p9j1UO + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: python-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python2.7dist(moose) = 3.0.2 python2dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libpython2.7.so.1.0 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-moose < 3.0.2-0.13.fc27.beta.2.git0e12e41 Processing files: python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HXwutM + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + DOCDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + cp -pr README.md /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/doc/moose + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Jnjd4J + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + LICENSEDIR=/builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + cp -pr LICENSE /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386/usr/share/licenses/moose + exit 0 Provides: python3-libmumbl = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-moose(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3-rdesigneur = 3.0.2-0.13.fc27.beta.2.git0e12e41 python3.6dist(moose) = 3.0.2 python3dist(moose) = 3.0.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgsl.so.23 libgslcblas.so.0 libhdf5.so.10 libhdf5_hl.so.10 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libmuparser.so.2 libpython3.6m.so.1.0 libsbml.so.5 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtinyxml.so.0 libxml2.so.2 python(abi) = 3.6 rtld(GNU_HASH) Processing files: moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.i686 Provides: moose-debuginfo = 3.0.2-0.13.fc27.beta.2.git0e12e41 moose-debuginfo(x86-32) = 3.0.2-0.13.fc27.beta.2.git0e12e41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 Wrote: /builddir/build/RPMS/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/python2-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/python3-moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Wrote: /builddir/build/RPMS/moose-debuginfo-3.0.2-0.13.fc27.beta.2.git0e12e41.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.7p8GlO + umask 022 + cd /builddir/build/BUILD + cd moose-core-0e12e41b52deb8ea746bc760cddd6e100ca5cfd8 + /usr/bin/rm -rf /builddir/build/BUILDROOT/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.i386 + exit 0 Finish: rpmbuild moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm Finish: build phase for moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm INFO: Done(intermediate-srpm/moose-3.0.2-0.13.fc27.beta.2.git0e12e41.src.rpm) Config(child) 43 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run