Warning: Permanently added '172.25.85.59' (ECDSA) to the list of known hosts.
Cloning into 'mmseq'...
Note: checking out '00910c1e236fe3431ffc7d7f55f4500aabb53f71'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 00910c1... import_srpm
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 11.2M  100 11.2M    0     0  27.3M      0 --:--:-- --:--:-- --:--:-- 27.3M
1.0.8a.zip: OK
WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default...
INFO: mock.py version 1.4.2 starting (python version = 3.6.1)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: compress_logs: initialized
Finish: init plugins
Start: run
INFO: Start(mmseq.spec)  Config(579095-fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/579095-fedora-rawhide-x86_64/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.2
INFO: Mock Version: 1.4.2
Start: dnf install
"Copr repository"     0% [                    ] ---  B/s |   0  B     --:-- ETA
"Copr repository"                               2.3 MB/s | 158 kB     00:00    
fedora                0% [                    ] ---  B/s |   0  B     --:-- ETA
fedora               18% [===-                ]  34 MB/s |  10 MB     00:01 ETA
fedora               50% [==========          ]  36 MB/s |  28 MB     00:00 ETA
fedora               88% [=================-  ]  38 MB/s |  49 MB     00:00 ETA
fedora                                           50 MB/s |  56 MB     00:01    
Last metadata expiration check: 0:00:00 ago on Thu 13 Jul 2017 09:08:26 PM UTC.
Dependencies resolved.
================================================================================
 Group                          Packages                                       
================================================================================
Marking packages as installed by the group:
 @Buildsystem building group    findutils       sed                gzip        
                                cpio            redhat-rpm-config  xz          
                                which           make               shadow-utils
                                tar             rpm-build          unzip       
                                gawk            bash               gcc-c++     
                                bzip2           gcc                coreutils   
                                info            diffutils          patch       
                                fedora-release  util-linux         grep        
================================================================================
 Package                      Arch    Version                     Repository
                                                                           Size
================================================================================
Installing dependencies:
 audit-libs                   x86_64  2.7.7-1.fc27                fedora  107 k
 basesystem                   noarch  11-3.fc26                   fedora  8.8 k
 bash                         x86_64  4.4.12-6.fc27               fedora  1.5 M
 binutils                     x86_64  2.28-9.fc27                 fedora  5.6 M
 bzip2                        x86_64  1.0.6-22.fc26               fedora   57 k
 bzip2-libs                   x86_64  1.0.6-22.fc26               fedora   45 k
 ca-certificates              noarch  2017.2.14-2.fc27            fedora  478 k
 chkconfig                    x86_64  1.10-1.fc27                 fedora  185 k
 coreutils                    x86_64  8.27-10.fc27                fedora  1.1 M
 coreutils-common             x86_64  8.27-10.fc27                fedora  1.9 M
 cpio                         x86_64  2.12-4.fc26                 fedora  261 k
 cpp                          x86_64  7.1.1-5.fc27                fedora  9.1 M
 cracklib                     x86_64  2.9.6-5.fc26                fedora   85 k
 crypto-policies              noarch  20170606-1.git7c32281.fc27  fedora   35 k
 curl                         x86_64  7.54.1-2.fc27               fedora  308 k
 cyrus-sasl-lib               x86_64  2.1.26-32.fc27              fedora  160 k
 diffutils                    x86_64  3.6-1.fc27                  fedora  352 k
 dwz                          x86_64  0.12-3.fc26                 fedora  105 k
 elfutils                     x86_64  0.169-3.fc27                fedora  303 k
 elfutils-default-yama-scope  noarch  0.169-3.fc27                fedora   38 k
 elfutils-libelf              x86_64  0.169-3.fc27                fedora  200 k
 elfutils-libs                x86_64  0.169-3.fc27                fedora  279 k
 expat                        x86_64  2.2.1-2.fc27                fedora   94 k
 fedora-release               noarch  27-0.2                      fedora   25 k
 fedora-repos                 noarch  27-0.2                      fedora   92 k
 fedora-repos-rawhide         noarch  27-0.2                      fedora  7.4 k
 fedora-rpm-macros            noarch  26-2.fc26                   fedora  6.5 k
 file                         x86_64  5.31-1.fc27                 fedora   70 k
 file-libs                    x86_64  5.31-1.fc27                 fedora  507 k
 filesystem                   x86_64  3.3-1.fc27                  fedora  1.1 M
 findutils                    x86_64  1:4.6.0-12.fc27             fedora  520 k
 fpc-srpm-macros              noarch  1.1-2.fc26                  fedora  7.0 k
 gawk                         x86_64  4.1.4-3.fc26                fedora  1.1 M
 gc                           x86_64  7.6.0-4.fc27                fedora  109 k
 gcc                          x86_64  7.1.1-5.fc27                fedora   21 M
 gcc-c++                      x86_64  7.1.1-5.fc27                fedora   11 M
 gdb-headless                 x86_64  8.0-17.fc27                 fedora  3.3 M
 gdbm                         x86_64  1.13-1.fc27                 fedora  155 k
 ghc-srpm-macros              noarch  1.4.2-5.fc26                fedora  7.7 k
 glib2                        x86_64  2.53.3-1.fc27               fedora  2.4 M
 glibc                        x86_64  2.25.90-22.fc27             fedora  3.6 M
 glibc-all-langpacks          x86_64  2.25.90-22.fc27             fedora  7.0 M
 glibc-common                 x86_64  2.25.90-22.fc27             fedora  865 k
 glibc-devel                  x86_64  2.25.90-22.fc27             fedora  1.0 M
 glibc-headers                x86_64  2.25.90-22.fc27             fedora  518 k
 gmp                          x86_64  1:6.1.2-4.fc27              fedora  279 k
 gnat-srpm-macros             noarch  4-2.fc26                    fedora  8.1 k
 gnupg2                       x86_64  2.1.21-2.fc27               fedora  2.2 M
 gnutls                       x86_64  3.5.14-1.fc27               fedora  755 k
 go-srpm-macros               noarch  2-9.fc27                    fedora  7.9 k
 grep                         x86_64  3.1-1.fc27                  fedora  269 k
 guile                        x86_64  5:2.0.14-1.fc26             fedora  3.5 M
 gzip                         x86_64  1.8-2.fc26                  fedora  158 k
 info                         x86_64  6.4-2.fc27                  fedora  191 k
 isl                          x86_64  0.16.1-1.fc26               fedora  821 k
 kernel-headers               x86_64  4.13.0-0.rc0.git5.1.fc27    fedora  1.2 M
 keyutils-libs                x86_64  1.5.10-1.fc27               fedora   31 k
 krb5-libs                    x86_64  1.15.1-14.fc27              fedora  750 k
 libacl                       x86_64  2.2.52-15.fc27              fedora   32 k
 libarchive                   x86_64  3.3.1-1.fc27                fedora  352 k
 libassuan                    x86_64  2.4.3-2.fc26                fedora   75 k
 libatomic_ops                x86_64  7.4.6-1.fc27                fedora   33 k
 libattr                      x86_64  2.4.47-18.fc26              fedora   23 k
 libbabeltrace                x86_64  1.5.2-2.fc27                fedora  190 k
 libblkid                     x86_64  2.30-1.fc27                 fedora  194 k
 libcap                       x86_64  2.25-5.fc26                 fedora   51 k
 libcap-ng                    x86_64  0.7.8-3.fc26                fedora   29 k
 libcom_err                   x86_64  1.43.4-2.fc26               fedora   44 k
 libcrypt-nss                 x86_64  2.25.90-22.fc27             fedora   58 k
 libcurl                      x86_64  7.54.1-2.fc27               fedora  268 k
 libdb                        x86_64  5.3.28-24.fc27              fedora  752 k
 libdb-utils                  x86_64  5.3.28-24.fc27              fedora  142 k
 libfdisk                     x86_64  2.30-1.fc27                 fedora  241 k
 libffi                       x86_64  3.1-12.fc27                 fedora   34 k
 libgcc                       x86_64  7.1.1-5.fc27                fedora   87 k
 libgcrypt                    x86_64  1.7.8-1.fc27                fedora  435 k
 libgomp                      x86_64  7.1.1-5.fc27                fedora  195 k
 libgpg-error                 x86_64  1.27-1.fc27                 fedora  182 k
 libidn2                      x86_64  2.0.2-1.fc27                fedora   95 k
 libipt                       x86_64  1.6.1-2.fc27                fedora   47 k
 libksba                      x86_64  1.3.5-3.fc26                fedora  131 k
 libmetalink                  x86_64  0.1.3-2.fc26                fedora   28 k
 libmount                     x86_64  2.30-1.fc27                 fedora  216 k
 libmpc                       x86_64  1.0.2-6.fc26                fedora   55 k
 libnghttp2                   x86_64  1.24.0-1.fc27               fedora   72 k
 libpkgconf                   x86_64  1.3.7-1.fc27                fedora   30 k
 libpsl                       x86_64  0.17.0-2.fc26               fedora   48 k
 libpwquality                 x86_64  1.4.0-1.fc27                fedora   99 k
 libselinux                   x86_64  2.6-6.fc27                  fedora  170 k
 libsemanage                  x86_64  2.6-4.fc27                  fedora  152 k
 libsepol                     x86_64  2.6-1.fc26                  fedora  295 k
 libsigsegv                   x86_64  2.11-1.fc26                 fedora   28 k
 libsmartcols                 x86_64  2.30-1.fc27                 fedora  157 k
 libssh2                      x86_64  1.8.0-2.fc26                fedora   94 k
 libstdc++                    x86_64  7.1.1-5.fc27                fedora  459 k
 libstdc++-devel              x86_64  7.1.1-5.fc27                fedora  1.9 M
 libtasn1                     x86_64  4.12-1.fc27                 fedora   73 k
 libtool-ltdl                 x86_64  2.4.6-18.fc27               fedora   55 k
 libunistring                 x86_64  0.9.7-1.fc26                fedora  408 k
 libusbx                      x86_64  1.0.21-2.fc26               fedora   66 k
 libutempter                  x86_64  1.1.6-9.fc26                fedora   29 k
 libuuid                      x86_64  2.30-1.fc27                 fedora   81 k
 libverto                     x86_64  0.2.6-7.fc26                fedora   20 k
 libxml2                      x86_64  2.9.4-2.fc26                fedora  690 k
 lua-libs                     x86_64  5.3.4-3.fc27                fedora  114 k
 lz4-libs                     x86_64  1.7.5-4.fc27                fedora   47 k
 make                         x86_64  1:4.2.1-2.fc26              fedora  492 k
 mpfr                         x86_64  3.1.5-3.fc27                fedora  215 k
 ncurses                      x86_64  6.0-10.20170520.fc27        fedora  365 k
 ncurses-base                 noarch  6.0-10.20170520.fc27        fedora   77 k
 ncurses-libs                 x86_64  6.0-10.20170520.fc27        fedora  318 k
 nettle                       x86_64  3.3-2.fc26                  fedora  305 k
 npth                         x86_64  1.5-1.fc27                  fedora   24 k
 nspr                         x86_64  4.15.0-1.fc27               fedora  138 k
 nss                          x86_64  3.31.0-2.fc27               fedora  864 k
 nss-pem                      x86_64  1.0.3-3.fc27                fedora   76 k
 nss-softokn                  x86_64  3.31.0-2.fc27               fedora  387 k
 nss-softokn-freebl           x86_64  3.31.0-2.fc27               fedora  226 k
 nss-sysinit                  x86_64  3.31.0-2.fc27               fedora   62 k
 nss-util                     x86_64  3.31.0-2.fc27               fedora   87 k
 ocaml-srpm-macros            noarch  4-2.fc26                    fedora  7.5 k
 openblas-srpm-macros         noarch  2-1.fc27                    fedora  6.5 k
 openldap                     x86_64  2.4.45-1.fc27               fedora  354 k
 openssl-libs                 x86_64  1:1.1.0f-5.fc27             fedora  1.3 M
 p11-kit                      x86_64  0.23.7-1.fc27               fedora  261 k
 p11-kit-trust                x86_64  0.23.7-1.fc27               fedora  131 k
 pam                          x86_64  1.3.0-3.fc27                fedora  742 k
 patch                        x86_64  2.7.5-4.fc26                fedora  122 k
 pcre                         x86_64  8.41-1.fc27                 fedora  204 k
 perl-srpm-macros             noarch  1-23.fc27                   fedora  9.2 k
 pkgconf                      x86_64  1.3.7-1.fc27                fedora   30 k
 pkgconf-m4                   noarch  1.3.7-1.fc27                fedora   13 k
 pkgconf-pkg-config           x86_64  1.3.7-1.fc27                fedora   12 k
 popt                         x86_64  1.16-8.fc26                 fedora   58 k
 publicsuffix-list-dafsa      noarch  20170424-1.fc27             fedora   44 k
 python-srpm-macros           noarch  3-20.fc27                   fedora  9.2 k
 qt5-srpm-macros              noarch  5.9.0-2.fc27                fedora  8.3 k
 readline                     x86_64  7.0-5.fc26                  fedora  215 k
 redhat-rpm-config            noarch  64-1.fc27                   fedora   61 k
 rpm                          x86_64  4.13.0.1-31.fc27            fedora  524 k
 rpm-build                    x86_64  4.13.0.1-31.fc27            fedora  153 k
 rpm-build-libs               x86_64  4.13.0.1-31.fc27            fedora  131 k
 rpm-libs                     x86_64  4.13.0.1-31.fc27            fedora  309 k
 rpm-plugin-selinux           x86_64  4.13.0.1-31.fc27            fedora   61 k
 sed                          x86_64  4.4-1.fc26                  fedora  286 k
 setup                        noarch  2.10.5-2.fc26               fedora  174 k
 shadow-utils                 x86_64  2:4.3.1-3.fc26              fedora  1.2 M
 sqlite-libs                  x86_64  3.19.3-1.fc27               fedora  467 k
 system-python-libs           x86_64  3.6.1-10.fc27               fedora  6.3 M
 systemd-libs                 x86_64  233-6.fc27                  fedora  456 k
 tar                          x86_64  2:1.29-4.fc26               fedora  813 k
 tzdata                       noarch  2017b-1.fc27                fedora  420 k
 unzip                        x86_64  6.0-33.fc26                 fedora  187 k
 ustr                         x86_64  1.0.4-22.fc26               fedora  100 k
 util-linux                   x86_64  2.30-1.fc27                 fedora  2.4 M
 which                        x86_64  2.21-2.fc26                 fedora   45 k
 xz                           x86_64  5.2.3-2.fc26                fedora  148 k
 xz-libs                      x86_64  5.2.3-2.fc26                fedora   90 k
 zip                          x86_64  3.0-18.fc26                 fedora  269 k
 zlib                         x86_64  1.2.11-2.fc26               fedora   98 k

Transaction Summary
================================================================================
Install  160 Packages

Total download size: 117 M
Installed size: 450 M
Downloading Packages:
(1/160): shadow-util  0% [                    ] ---  B/s |   0  B     --:-- ETA
(1/160): diffutils-3.6-1.fc27.x86_64.rpm        3.9 MB/s | 352 kB     00:00    
(2-3/160): shadow-ut  0% [                    ]  13 MB/s | 1.1 MB     00:09 ETA
(2/160): fedora-release-27-0.2.noarch.rpm       3.9 MB/s |  25 kB     00:00    
(3-4/160): shadow-ut  1% [                    ]  13 MB/s | 1.4 MB     00:08 ETA
(3/160): make-4.2.1-2.fc26.x86_64.rpm           4.8 MB/s | 492 kB     00:00    
(4-5/160): shadow-ut  1% [                    ]  13 MB/s | 1.6 MB     00:08 ETA
(4/160): shadow-utils-4.3.1-3.fc26.x86_64.rpm    10 MB/s | 1.2 MB     00:00    
(5-6/160): sed-4.4-1  1% [                    ]  13 MB/s | 2.3 MB     00:08 ETA
(5/160): rpm-build-4.13.0.1-31.fc27.x86_64.rpm  9.8 MB/s | 153 kB     00:00    
(6-7/160): sed-4.4-1  2% [                    ]  13 MB/s | 2.4 MB     00:08 ETA
(6/160): sed-4.4-1.fc26.x86_64.rpm               13 MB/s | 286 kB     00:00    
(7-8/160): which-2.2  2% [                    ]  13 MB/s | 2.5 MB     00:08 ETA
(7/160): which-2.21-2.fc26.x86_64.rpm           4.0 MB/s |  45 kB     00:00    
(8-9/160): patch-2.7  2% [                    ]  13 MB/s | 2.5 MB     00:08 ETA
(8/160): patch-2.7.5-4.fc26.x86_64.rpm           10 MB/s | 122 kB     00:00    
(9-10/160): info-6.4  2% [                    ]  13 MB/s | 2.7 MB     00:08 ETA
(9/160): xz-5.2.3-2.fc26.x86_64.rpm              18 MB/s | 148 kB     00:00    
(10-11/160): info-6.  2% [                    ]  13 MB/s | 2.9 MB     00:08 ETA
(10/160): info-6.4-2.fc27.x86_64.rpm             11 MB/s | 191 kB     00:00    
(11-12/160): gzip-1.  2% [-                   ]  13 MB/s | 2.9 MB     00:08 ETA
(11/160): gzip-1.8-2.fc26.x86_64.rpm             14 MB/s | 158 kB     00:00    
(12-13/160): bash-4.  2% [-                   ]  13 MB/s | 3.2 MB     00:08 ETA
(12/160): redhat-rpm-config-64-1.fc27.noarch.rp 8.7 MB/s |  61 kB     00:00    
(13-14/160): bash-4.  2% [-                   ]  13 MB/s | 3.4 MB     00:08 ETA
(13/160): grep-3.1-1.fc27.x86_64.rpm             12 MB/s | 269 kB     00:00    
(14-15/160): bash-4.  4% [-                   ]  13 MB/s | 4.8 MB     00:08 ETA
(14/160): findutils-4.6.0-12.fc27.x86_64.rpm     15 MB/s | 520 kB     00:00    
(15-16/160): bash-4.  4% [-                   ]  13 MB/s | 5.4 MB     00:08 ETA
(15/160): bash-4.4.12-6.fc27.x86_64.rpm          33 MB/s | 1.5 MB     00:00    
(16-17/160): cpio-2.  4% [-                   ]  13 MB/s | 5.5 MB     00:08 ETA
(16/160): cpio-2.12-4.fc26.x86_64.rpm            14 MB/s | 261 kB     00:00    
(17-18/160): coreuti  5% [=                   ]  14 MB/s | 6.1 MB     00:08 ETA
(17/160): tar-1.29-4.fc26.x86_64.rpm            7.2 MB/s | 813 kB     00:00    
(18-19/160): bzip2-1  5% [=                   ]  13 MB/s | 6.5 MB     00:08 ETA
(18/160): bzip2-1.0.6-22.fc26.x86_64.rpm        567 kB/s |  57 kB     00:00    
(19-20/160): audit-l  6% [=                   ]  14 MB/s | 7.3 MB     00:08 ETA
(19/160): coreutils-8.27-10.fc27.x86_64.rpm     9.3 MB/s | 1.1 MB     00:00    
(20-21/160): glibc-2  6% [=                   ]  14 MB/s | 7.7 MB     00:08 ETA
(20/160): audit-libs-2.7.7-1.fc27.x86_64.rpm    3.4 MB/s | 107 kB     00:00    
(21-22/160): libacl-  6% [=                   ]  14 MB/s | 7.8 MB     00:08 ETA
(21/160): libacl-2.2.52-15.fc27.x86_64.rpm      5.4 MB/s |  32 kB     00:00    
(22-23/160): libattr  6% [=                   ]  14 MB/s | 8.0 MB     00:08 ETA
(22/160): libattr-2.4.47-18.fc26.x86_64.rpm     1.9 MB/s |  23 kB     00:00    
(23-24/160): libseli  7% [=                   ]  14 MB/s | 8.3 MB     00:07 ETA
(23/160): libselinux-2.6-6.fc27.x86_64.rpm       15 MB/s | 170 kB     00:00    
(24-25/160): libsema  7% [=                   ]  14 MB/s | 8.6 MB     00:07 ETA
(24/160): libsemanage-2.6-4.fc27.x86_64.rpm     9.7 MB/s | 152 kB     00:00    
(25-26/160): setup-2  7% [=-                  ]  14 MB/s | 9.3 MB     00:07 ETA
(25/160): setup-2.10.5-2.fc26.noarch.rpm         12 MB/s | 174 kB     00:00    
(26-27/160): gc-7.6.  8% [=-                  ]  14 MB/s | 9.4 MB     00:07 ETA
(26/160): gc-7.6.0-4.fc27.x86_64.rpm             15 MB/s | 109 kB     00:00    
(27-28/160): guile-2  8% [=-                  ]  14 MB/s | 9.9 MB     00:07 ETA
(27/160): fedora-repos-27-0.2.noarch.rpm        7.9 MB/s |  92 kB     00:00    
(28-29/160): guile-2  9% [=-                  ]  14 MB/s |  11 MB     00:07 ETA
(28/160): glibc-2.25.90-22.fc27.x86_64.rpm       25 MB/s | 3.6 MB     00:00    
(29-30/160): binutil 13% [==-                 ]  15 MB/s |  16 MB     00:06 ETA
(29/160): guile-2.0.14-1.fc26.x86_64.rpm         29 MB/s | 3.5 MB     00:00    
(30-31/160): bzip2-l 14% [==-                 ]  15 MB/s |  17 MB     00:06 ETA
(30/160): bzip2-libs-1.0.6-22.fc26.x86_64.rpm   1.6 MB/s |  45 kB     00:00    
(31-32/160): elfutil 15% [===                 ]  15 MB/s |  18 MB     00:06 ETA
(31/160): elfutils-0.169-3.fc27.x86_64.rpm       14 MB/s | 303 kB     00:00    
(32-33/160): elfutil 15% [===                 ]  15 MB/s |  18 MB     00:06 ETA
(32/160): elfutils-libelf-0.169-3.fc27.x86_64.r 7.8 MB/s | 200 kB     00:00    
(33-34/160): elfutil 16% [===                 ]  15 MB/s |  19 MB     00:06 ETA
(33/160): elfutils-libs-0.169-3.fc27.x86_64.rpm  13 MB/s | 279 kB     00:00    
(34-35/160): file-5. 16% [===                 ]  15 MB/s |  20 MB     00:06 ETA
(34/160): file-5.31-1.fc27.x86_64.rpm           3.9 MB/s |  70 kB     00:00    
(35-36/160): file-li 17% [===-                ]  16 MB/s |  21 MB     00:06 ETA
(35/160): file-libs-5.31-1.fc27.x86_64.rpm       15 MB/s | 507 kB     00:00    
(36-37/160): gdb-hea 18% [===-                ]  16 MB/s |  22 MB     00:06 ETA
(36/160): binutils-2.28-9.fc27.x86_64.rpm        27 MB/s | 5.6 MB     00:00    
(37-38/160): libcap- 19% [===-                ]  16 MB/s |  23 MB     00:05 ETA
(37/160): libcap-2.25-5.fc26.x86_64.rpm         1.8 MB/s |  51 kB     00:00    
(38-39/160): libdb-5 19% [===-                ]  16 MB/s |  23 MB     00:05 ETA
(38/160): lua-libs-5.3.4-3.fc27.x86_64.rpm      5.6 MB/s | 114 kB     00:00    
(39-40/160): libdb-5 20% [====                ]  16 MB/s |  25 MB     00:05 ETA
(39/160): libdb-5.3.28-24.fc27.x86_64.rpm        27 MB/s | 752 kB     00:00    
(40-41/160): openssl 21% [====                ]  16 MB/s |  25 MB     00:05 ETA
(40/160): popt-1.16-8.fc26.x86_64.rpm           3.1 MB/s |  58 kB     00:00    
(41-42/160): openssl 22% [====-               ]  16 MB/s |  26 MB     00:05 ETA
(41/160): openssl-libs-1.1.0f-5.fc27.x86_64.rpm  27 MB/s | 1.3 MB     00:00    
(42-43/160): rpm-4.1 23% [====-               ]  17 MB/s |  28 MB     00:05 ETA
(42/160): gdb-headless-8.0-17.fc27.x86_64.rpm    24 MB/s | 3.3 MB     00:00    
(43-44/160): rpm-bui 24% [====-               ]  17 MB/s |  28 MB     00:05 ETA
(43/160): rpm-build-libs-4.13.0.1-31.fc27.x86_6 5.2 MB/s | 131 kB     00:00    
(44-45/160): rpm-lib 24% [====-               ]  17 MB/s |  28 MB     00:05 ETA
(44/160): rpm-4.13.0.1-31.fc27.x86_64.rpm       9.4 MB/s | 524 kB     00:00    
(45-46/160): xz-libs 24% [====-               ]  17 MB/s |  29 MB     00:05 ETA
(45/160): xz-libs-5.2.3-2.fc26.x86_64.rpm       8.8 MB/s |  90 kB     00:00    
(46-47/160): zlib-1. 24% [====-               ]  17 MB/s |  29 MB     00:05 ETA
(46/160): rpm-libs-4.13.0.1-31.fc27.x86_64.rpm   18 MB/s | 309 kB     00:00    
(47-48/160): ncurses 24% [====-               ]  17 MB/s |  29 MB     00:05 ETA
(47/160): zlib-1.2.11-2.fc26.x86_64.rpm          10 MB/s |  98 kB     00:00    
(48-49/160): filesys 25% [=====               ]  17 MB/s |  29 MB     00:05 ETA
(48/160): ncurses-libs-6.0-10.20170520.fc27.x86  25 MB/s | 318 kB     00:00    
(49-50/160): dwz-0.1 25% [=====               ]  17 MB/s |  30 MB     00:05 ETA
(49/160): dwz-0.12-3.fc26.x86_64.rpm             10 MB/s | 105 kB     00:00    
(50-51/160): fedora- 25% [=====               ]  17 MB/s |  30 MB     00:05 ETA
(50/160): filesystem-3.3-1.fc27.x86_64.rpm       39 MB/s | 1.1 MB     00:00    
(51-52/160): fpc-srp 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(51/160): fedora-rpm-macros-26-2.fc26.noarch.rp 315 kB/s | 6.5 kB     00:00    
(52-53/160): ghc-srp 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(52/160): fpc-srpm-macros-1.1-2.fc26.noarch.rpm 420 kB/s | 7.0 kB     00:00    
(53-54/160): gnat-sr 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(53/160): ghc-srpm-macros-1.4.2-5.fc26.noarch.r 865 kB/s | 7.7 kB     00:00    
(54-55/160): go-srpm 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(54/160): gnat-srpm-macros-4-2.fc26.noarch.rpm  826 kB/s | 8.1 kB     00:00    
(55-56/160): ocaml-s 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(55/160): go-srpm-macros-2-9.fc27.noarch.rpm    627 kB/s | 7.9 kB     00:00    
(56-57/160): openbla 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(56/160): ocaml-srpm-macros-4-2.fc26.noarch.rpm 1.2 MB/s | 7.5 kB     00:00    
(57-58/160): perl-sr 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(57/160): openblas-srpm-macros-2-1.fc27.noarch. 1.0 MB/s | 6.5 kB     00:00    
(58-59/160): python- 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(58/160): perl-srpm-macros-1-23.fc27.noarch.rpm 2.4 MB/s | 9.2 kB     00:00    
(59-60/160): qt5-srp 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(59/160): python-srpm-macros-3-20.fc27.noarch.r 3.0 MB/s | 9.2 kB     00:00    
(60-61/160): zip-3.0 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(60/160): qt5-srpm-macros-5.9.0-2.fc27.noarch.r 1.8 MB/s | 8.3 kB     00:00    
(61-62/160): pcre-8. 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(61/160): zip-3.0-18.fc26.x86_64.rpm             37 MB/s | 269 kB     00:00    
(62-63/160): coreuti 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(62/160): pcre-8.41-1.fc27.x86_64.rpm           8.8 MB/s | 204 kB     00:00    
(63-64/160): gmp-6.1 26% [=====               ]  17 MB/s |  31 MB     00:05 ETA
(63/160): gmp-6.1.2-4.fc27.x86_64.rpm           9.3 MB/s | 279 kB     00:00    
(64-65/160): ncurses 27% [=====-              ]  17 MB/s |  32 MB     00:04 ETA
(64/160): ncurses-6.0-10.20170520.fc27.x86_64.r  15 MB/s | 365 kB     00:00    
(65-66/160): libcap- 28% [=====-              ]  17 MB/s |  33 MB     00:04 ETA
(65/160): coreutils-common-8.27-10.fc27.x86_64.  29 MB/s | 1.9 MB     00:00    
(66-67/160): basesys 28% [=====-              ]  17 MB/s |  34 MB     00:04 ETA
(66/160): basesystem-11-3.fc26.noarch.rpm       379 kB/s | 8.8 kB     00:00    
(67-68/160): glibc-c 28% [=====-              ]  17 MB/s |  34 MB     00:04 ETA
(67/160): libcap-ng-0.7.8-3.fc26.x86_64.rpm     855 kB/s |  29 kB     00:00    
(68-69/160): libsepo 28% [=====-              ]  17 MB/s |  34 MB     00:04 ETA
(68/160): ustr-1.0.4-22.fc26.x86_64.rpm         6.4 MB/s | 100 kB     00:00    
(69-70/160): libsepo 29% [=====-              ]  17 MB/s |  35 MB     00:04 ETA
(69/160): libsepol-2.6-1.fc26.x86_64.rpm         16 MB/s | 295 kB     00:00    
(70-71/160): libatom 29% [=====-              ]  17 MB/s |  35 MB     00:04 ETA
(70/160): glibc-common-2.25.90-22.fc27.x86_64.r  31 MB/s | 865 kB     00:00    
(71-72/160): libgcc- 29% [=====-              ]  17 MB/s |  35 MB     00:04 ETA
(71/160): libatomic_ops-7.4.6-1.fc27.x86_64.rpm 2.8 MB/s |  33 kB     00:00    
(72-73/160): libstdc 30% [======              ]  17 MB/s |  35 MB     00:04 ETA
(72/160): libgcc-7.1.1-5.fc27.x86_64.rpm        7.2 MB/s |  87 kB     00:00    
(73-74/160): libffi- 30% [======              ]  17 MB/s |  35 MB     00:04 ETA
(73/160): libffi-3.1-12.fc27.x86_64.rpm         5.8 MB/s |  34 kB     00:00    
(74-75/160): libtool 30% [======              ]  18 MB/s |  36 MB     00:04 ETA
(74/160): libstdc++-7.1.1-5.fc27.x86_64.rpm      31 MB/s | 459 kB     00:00    
(75-76/160): libunis 30% [======              ]  18 MB/s |  36 MB     00:04 ETA
(75/160): libtool-ltdl-2.4.6-18.fc27.x86_64.rpm 4.3 MB/s |  55 kB     00:00    
(76-77/160): readlin 30% [======              ]  18 MB/s |  36 MB     00:04 ETA
(76/160): libunistring-0.9.7-1.fc26.x86_64.rpm   28 MB/s | 408 kB     00:00    
(77-78/160): fedora- 30% [======              ]  18 MB/s |  36 MB     00:04 ETA
(77/160): fedora-repos-rawhide-27-0.2.noarch.rp 1.3 MB/s | 7.4 kB     00:00    
(78-79/160): chkconf 30% [======              ]  18 MB/s |  36 MB     00:04 ETA
(78/160): readline-7.0-5.fc26.x86_64.rpm         21 MB/s | 215 kB     00:00    
(79-80/160): elfutil 31% [======              ]  18 MB/s |  36 MB     00:04 ETA
(79/160): chkconfig-1.10-1.fc27.x86_64.rpm       31 MB/s | 185 kB     00:00    
(80-81/160): expat-2 31% [======              ]  18 MB/s |  37 MB     00:04 ETA
(80/160): elfutils-default-yama-scope-0.169-3.f 6.5 MB/s |  38 kB     00:00    
(81-82/160): libbabe 31% [======              ]  18 MB/s |  37 MB     00:04 ETA
(81/160): expat-2.2.1-2.fc27.x86_64.rpm          17 MB/s |  94 kB     00:00    
(82-83/160): libipt- 31% [======              ]  18 MB/s |  37 MB     00:04 ETA
(82/160): libbabeltrace-1.5.2-2.fc27.x86_64.rpm  33 MB/s | 190 kB     00:00    
(83-84/160): system- 31% [======              ]  18 MB/s |  37 MB     00:04 ETA
(83/160): libipt-1.6.1-2.fc27.x86_64.rpm        6.1 MB/s |  47 kB     00:00    
(84-85/160): ca-cert 31% [======              ]  18 MB/s |  37 MB     00:04 ETA
(84/160): crypto-policies-20170606-1.git7c32281 2.5 MB/s |  35 kB     00:00    
(85-86/160): ca-cert 32% [======              ]  18 MB/s |  38 MB     00:04 ETA
(85/160): ca-certificates-2017.2.14-2.fc27.noar  23 MB/s | 478 kB     00:00    
(86-87/160): libarch 32% [======-             ]  18 MB/s |  38 MB     00:04 ETA
(86/160): libarchive-3.3.1-1.fc27.x86_64.rpm     12 MB/s | 352 kB     00:00    
(87-88/160): libdb-u 34% [======-             ]  18 MB/s |  40 MB     00:04 ETA
(87/160): libdb-utils-5.3.28-24.fc27.x86_64.rpm 4.5 MB/s | 142 kB     00:00    
(88-89/160): gnupg2- 34% [======-             ]  18 MB/s |  40 MB     00:04 ETA
(88/160): rpm-plugin-selinux-4.13.0.1-31.fc27.x 1.0 MB/s |  61 kB     00:00    
(89-90/160): gnupg2- 38% [=======-            ]  19 MB/s |  45 MB     00:03 ETA
(89/160): system-python-libs-3.6.1-10.fc27.x86_  45 MB/s | 6.3 MB     00:00    
(90-91/160): ncurses 38% [=======-            ]  19 MB/s |  45 MB     00:03 ETA
(90/160): ncurses-base-6.0-10.20170520.fc27.noa 2.4 MB/s |  77 kB     00:00    
(91-92/160): tzdata- 38% [=======-            ]  19 MB/s |  46 MB     00:03 ETA
(91/160): gnupg2-2.1.21-2.fc27.x86_64.rpm        19 MB/s | 2.2 MB     00:00    
(92-93/160): glib2-2 40% [========            ]  19 MB/s |  47 MB     00:03 ETA
(92/160): tzdata-2017b-1.fc27.noarch.rpm         17 MB/s | 420 kB     00:00    
(93-94/160): libuuid 40% [========            ]  19 MB/s |  47 MB     00:03 ETA
(93/160): libuuid-2.30-1.fc27.x86_64.rpm        4.0 MB/s |  81 kB     00:00    
(94-95/160): gdbm-1. 41% [========            ]  19 MB/s |  48 MB     00:03 ETA
(94/160): gdbm-1.13-1.fc27.x86_64.rpm           5.7 MB/s | 155 kB     00:00    
(95-96/160): sqlite- 41% [========            ]  19 MB/s |  49 MB     00:03 ETA
(95/160): glib2-2.53.3-1.fc27.x86_64.rpm         31 MB/s | 2.4 MB     00:00    
(96-97/160): libxml2 42% [========            ]  19 MB/s |  50 MB     00:03 ETA
(96/160): sqlite-libs-3.19.3-1.fc27.x86_64.rpm  9.5 MB/s | 467 kB     00:00    
(97-98/160): lz4-lib 43% [========-           ]  20 MB/s |  51 MB     00:03 ETA
(97/160): libxml2-2.9.4-2.fc26.x86_64.rpm        17 MB/s | 690 kB     00:00    
(98-99/160): gnutls- 43% [========-           ]  20 MB/s |  51 MB     00:03 ETA
(98/160): lz4-libs-1.7.5-4.fc27.x86_64.rpm      4.5 MB/s |  47 kB     00:00    
(99-100/160): libass 43% [========-           ]  20 MB/s |  51 MB     00:03 ETA
(99/160): libassuan-2.4.3-2.fc26.x86_64.rpm     7.9 MB/s |  75 kB     00:00    
(100-101/160): libgc 43% [========-           ]  20 MB/s |  51 MB     00:03 ETA
(100/160): gnutls-3.5.14-1.fc27.x86_64.rpm       36 MB/s | 755 kB     00:00    
(101-102/160): libgp 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(101/160): libgcrypt-1.7.8-1.fc27.x86_64.rpm     19 MB/s | 435 kB     00:00    
(102-103/160): libks 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(102/160): libgpg-error-1.27-1.fc27.x86_64.rpm  9.8 MB/s | 182 kB     00:00    
(103-104/160): libus 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(103/160): libksba-1.3.5-3.fc26.x86_64.rpm      9.0 MB/s | 131 kB     00:00    
(104-105/160): npth- 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(104/160): libusbx-1.0.21-2.fc26.x86_64.rpm     6.2 MB/s |  66 kB     00:00    
(105-106/160): openl 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(105/160): npth-1.5-1.fc27.x86_64.rpm           2.0 MB/s |  24 kB     00:00    
(106-107/160): libmo 44% [========-           ]  20 MB/s |  52 MB     00:03 ETA
(106/160): openldap-2.4.45-1.fc27.x86_64.rpm     21 MB/s | 354 kB     00:00    
(107-108/160): libid 45% [=========           ]  20 MB/s |  53 MB     00:03 ETA
(107/160): libmount-2.30-1.fc27.x86_64.rpm       12 MB/s | 216 kB     00:00    
(108-109/160): libta 45% [=========           ]  20 MB/s |  53 MB     00:03 ETA
(108/160): libidn2-2.0.2-1.fc27.x86_64.rpm      5.5 MB/s |  95 kB     00:00    
(109-110/160): nettl 45% [=========           ]  20 MB/s |  53 MB     00:03 ETA
(109/160): libtasn1-4.12-1.fc27.x86_64.rpm      5.2 MB/s |  73 kB     00:00    
(110-111/160): p11-k 45% [=========           ]  20 MB/s |  53 MB     00:03 ETA
(110/160): nettle-3.3-2.fc26.x86_64.rpm          19 MB/s | 305 kB     00:00    
(111-112/160): syste 45% [=========           ]  20 MB/s |  54 MB     00:03 ETA
(111/160): p11-kit-0.23.7-1.fc27.x86_64.rpm      17 MB/s | 261 kB     00:00    
(112-113/160): cyrus 45% [=========           ]  20 MB/s |  54 MB     00:03 ETA
(112/160): systemd-libs-233-6.fc27.x86_64.rpm    29 MB/s | 456 kB     00:00    
(113-114/160): nspr- 46% [=========           ]  20 MB/s |  54 MB     00:03 ETA
(113/160): cyrus-sasl-lib-2.1.26-32.fc27.x86_64  14 MB/s | 160 kB     00:00    
(114-115/160): nss-3 46% [=========           ]  20 MB/s |  54 MB     00:03 ETA
(114/160): nspr-4.15.0-1.fc27.x86_64.rpm         14 MB/s | 138 kB     00:00    
(115-116/160): nss-u 46% [=========           ]  20 MB/s |  55 MB     00:03 ETA
(115/160): nss-util-3.31.0-2.fc27.x86_64.rpm     10 MB/s |  87 kB     00:00    
(116-117/160): libbl 47% [=========           ]  20 MB/s |  55 MB     00:03 ETA
(116/160): nss-3.31.0-2.fc27.x86_64.rpm          45 MB/s | 864 kB     00:00    
(117-118/160): krb5- 47% [=========           ]  20 MB/s |  56 MB     00:03 ETA
(117/160): libblkid-2.30-1.fc27.x86_64.rpm      6.6 MB/s | 194 kB     00:00    
(118-119/160): krb5- 47% [=========           ]  20 MB/s |  56 MB     00:03 ETA
(118/160): libcom_err-1.43.4-2.fc26.x86_64.rpm  2.5 MB/s |  44 kB     00:00    
(119-120/160): krb5- 47% [=========-          ]  20 MB/s |  56 MB     00:03 ETA
(119/160): krb5-libs-1.15.1-14.fc27.x86_64.rpm   15 MB/s | 750 kB     00:00    
(120-121/160): nss-p 48% [=========-          ]  20 MB/s |  56 MB     00:03 ETA
(120/160): nss-pem-1.0.3-3.fc27.x86_64.rpm      2.2 MB/s |  76 kB     00:00    
(121-122/160): nss-s 48% [=========-          ]  20 MB/s |  56 MB     00:03 ETA
(121/160): nss-softokn-3.31.0-2.fc27.x86_64.rpm  10 MB/s | 387 kB     00:00    
(122-123/160): nss-s 48% [=========-          ]  20 MB/s |  57 MB     00:02 ETA
(122/160): keyutils-libs-1.5.10-1.fc27.x86_64.r 4.0 MB/s |  31 kB     00:00    
(123-124/160): nss-s 48% [=========-          ]  20 MB/s |  57 MB     00:02 ETA
(123/160): nss-sysinit-3.31.0-2.fc27.x86_64.rpm 3.1 MB/s |  62 kB     00:00    
(124-125/160): libve 48% [=========-          ]  20 MB/s |  57 MB     00:02 ETA
(124/160): libverto-0.2.6-7.fc26.x86_64.rpm     2.5 MB/s |  20 kB     00:00    
(125-126/160): nss-s 48% [=========-          ]  20 MB/s |  57 MB     00:02 ETA
(125/160): nss-softokn-freebl-3.31.0-2.fc27.x86  16 MB/s | 226 kB     00:00    
(126-127/160): gcc-c 48% [=========-          ]  20 MB/s |  57 MB     00:02 ETA
(126/160): libmpc-1.0.2-6.fc26.x86_64.rpm       402 kB/s |  55 kB     00:00    
(127-128/160): gcc-c 56% [===========         ]  22 MB/s |  67 MB     00:02 ETA
(127/160): mpfr-3.1.5-3.fc27.x86_64.rpm         1.4 MB/s | 215 kB     00:00    
(128-129/160): gcc-c 57% [===========-        ]  22 MB/s |  68 MB     00:02 ETA
(128/160): gcc-c++-7.1.1-5.fc27.x86_64.rpm       53 MB/s |  11 MB     00:00    
(129-130/160): util- 58% [===========-        ]  22 MB/s |  68 MB     00:02 ETA
(129/160): libfdisk-2.30-1.fc27.x86_64.rpm      4.7 MB/s | 241 kB     00:00    
(130-131/160): util- 58% [===========-        ]  22 MB/s |  69 MB     00:02 ETA
(130/160): libsmartcols-2.30-1.fc27.x86_64.rpm   19 MB/s | 157 kB     00:00    
(131-132/160): util- 59% [===========-        ]  22 MB/s |  69 MB     00:02 ETA
(131/160): libutempter-1.1.6-9.fc26.x86_64.rpm  2.1 MB/s |  29 kB     00:00    
(132-133/160): util- 59% [===========-        ]  22 MB/s |  70 MB     00:02 ETA
(132/160): pam-1.3.0-3.fc27.x86_64.rpm           23 MB/s | 742 kB     00:00    
(133-134/160): util- 60% [============        ]  22 MB/s |  71 MB     00:02 ETA
(133/160): cracklib-2.9.6-5.fc26.x86_64.rpm     2.9 MB/s |  85 kB     00:00    
(134-135/160): util- 61% [============        ]  22 MB/s |  72 MB     00:02 ETA
(134/160): util-linux-2.30-1.fc27.x86_64.rpm     19 MB/s | 2.4 MB     00:00    
(135-136/160): gcc-7 61% [============        ]  22 MB/s |  72 MB     00:02 ETA
(135/160): isl-0.16.1-1.fc26.x86_64.rpm         6.4 MB/s | 821 kB     00:00    
(136-137/160): gcc-7 68% [=============-      ]  23 MB/s |  81 MB     00:01 ETA
(136/160): libgomp-7.1.1-5.fc27.x86_64.rpm      2.7 MB/s | 195 kB     00:00    
(137-138/160): gcc-7 74% [==============-     ]  24 MB/s |  87 MB     00:01 ETA
(137/160): unzip-6.0-33.fc26.x86_64.rpm         4.7 MB/s | 187 kB     00:00    
(138-139/160): gcc-7 77% [===============-    ]  25 MB/s |  91 MB     00:01 ETA
(138/160): gawk-4.1.4-3.fc26.x86_64.rpm          12 MB/s | 1.1 MB     00:00    
(139-140/160): gcc-7 83% [================-   ]  26 MB/s |  98 MB     00:00 ETA
(139/160): gcc-7.1.1-5.fc27.x86_64.rpm           45 MB/s |  21 MB     00:00    
(140-141/160): cpp-7 88% [=================-  ]  26 MB/s | 103 MB     00:00 ETA
(140/160): libsigsegv-2.11-1.fc26.x86_64.rpm    234 kB/s |  28 kB     00:00    
(141-142/160): cpp-7 88% [=================-  ]  26 MB/s | 103 MB     00:00 ETA
(141/160): cpp-7.1.1-5.fc27.x86_64.rpm           18 MB/s | 9.1 MB     00:00    
(142-143/160): pkgco 89% [=================-  ]  26 MB/s | 104 MB     00:00 ETA
(142/160): pkgconf-pkg-config-1.3.7-1.fc27.x86_ 329 kB/s |  12 kB     00:00    
(143-144/160): pkgco 89% [=================-  ]  26 MB/s | 104 MB     00:00 ETA
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(144-145/160): pkgco 89% [=================-  ]  26 MB/s | 104 MB     00:00 ETA
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  Verifying        : zip-3.0-18.fc26.x86_64                              61/160 

  Verifying        : pcre-8.41-1.fc27.x86_64                             62/160 

  Verifying        : coreutils-common-8.27-10.fc27.x86_64                63/160 

  Verifying        : gmp-1:6.1.2-4.fc27.x86_64                           64/160 

  Verifying        : ncurses-6.0-10.20170520.fc27.x86_64                 65/160 

  Verifying        : libcap-ng-0.7.8-3.fc26.x86_64                       66/160 

  Verifying        : basesystem-11-3.fc26.noarch                         67/160 

  Verifying        : glibc-common-2.25.90-22.fc27.x86_64                 68/160 

  Verifying        : libsepol-2.6-1.fc26.x86_64                          69/160 

  Verifying        : ustr-1.0.4-22.fc26.x86_64                           70/160 

  Verifying        : libatomic_ops-7.4.6-1.fc27.x86_64                   71/160 

  Verifying        : libgcc-7.1.1-5.fc27.x86_64                          72/160 

  Verifying        : libstdc++-7.1.1-5.fc27.x86_64                       73/160 

  Verifying        : libffi-3.1-12.fc27.x86_64                           74/160 

  Verifying        : libtool-ltdl-2.4.6-18.fc27.x86_64                   75/160 

  Verifying        : libunistring-0.9.7-1.fc26.x86_64                    76/160 

  Verifying        : readline-7.0-5.fc26.x86_64                          77/160 

  Verifying        : fedora-repos-rawhide-27-0.2.noarch                  78/160 

  Verifying        : chkconfig-1.10-1.fc27.x86_64                        79/160 

  Verifying        : elfutils-default-yama-scope-0.169-3.fc27.noarch     80/160 

  Verifying        : expat-2.2.1-2.fc27.x86_64                           81/160 

  Verifying        : libbabeltrace-1.5.2-2.fc27.x86_64                   82/160 

  Verifying        : libipt-1.6.1-2.fc27.x86_64                          83/160 

  Verifying        : system-python-libs-3.6.1-10.fc27.x86_64             84/160 

  Verifying        : ca-certificates-2017.2.14-2.fc27.noarch             85/160 

  Verifying        : crypto-policies-20170606-1.git7c32281.fc27.noarc    86/160 

  Verifying        : libarchive-3.3.1-1.fc27.x86_64                      87/160 

  Verifying        : libdb-utils-5.3.28-24.fc27.x86_64                   88/160 

  Verifying        : gnupg2-2.1.21-2.fc27.x86_64                         89/160 

  Verifying        : rpm-plugin-selinux-4.13.0.1-31.fc27.x86_64          90/160 

  Verifying        : ncurses-base-6.0-10.20170520.fc27.noarch            91/160 

  Verifying        : tzdata-2017b-1.fc27.noarch                          92/160 

  Verifying        : glib2-2.53.3-1.fc27.x86_64                          93/160 

  Verifying        : libuuid-2.30-1.fc27.x86_64                          94/160 

  Verifying        : gdbm-1.13-1.fc27.x86_64                             95/160 

  Verifying        : sqlite-libs-3.19.3-1.fc27.x86_64                    96/160 

  Verifying        : libxml2-2.9.4-2.fc26.x86_64                         97/160 

  Verifying        : lz4-libs-1.7.5-4.fc27.x86_64                        98/160 

  Verifying        : gnutls-3.5.14-1.fc27.x86_64                         99/160 

  Verifying        : libassuan-2.4.3-2.fc26.x86_64                      100/160 

  Verifying        : libgcrypt-1.7.8-1.fc27.x86_64                      101/160 

  Verifying        : libgpg-error-1.27-1.fc27.x86_64                    102/160 

  Verifying        : libksba-1.3.5-3.fc26.x86_64                        103/160 

  Verifying        : libusbx-1.0.21-2.fc26.x86_64                       104/160 

  Verifying        : npth-1.5-1.fc27.x86_64                             105/160 

  Verifying        : openldap-2.4.45-1.fc27.x86_64                      106/160 

  Verifying        : libmount-2.30-1.fc27.x86_64                        107/160 

  Verifying        : libidn2-2.0.2-1.fc27.x86_64                        108/160 

  Verifying        : libtasn1-4.12-1.fc27.x86_64                        109/160 

  Verifying        : nettle-3.3-2.fc26.x86_64                           110/160 

  Verifying        : p11-kit-0.23.7-1.fc27.x86_64                       111/160 

  Verifying        : systemd-libs-233-6.fc27.x86_64                     112/160 

  Verifying        : cyrus-sasl-lib-2.1.26-32.fc27.x86_64               113/160 

  Verifying        : nspr-4.15.0-1.fc27.x86_64                          114/160 

  Verifying        : nss-3.31.0-2.fc27.x86_64                           115/160 

  Verifying        : nss-util-3.31.0-2.fc27.x86_64                      116/160 

  Verifying        : libblkid-2.30-1.fc27.x86_64                        117/160 

  Verifying        : krb5-libs-1.15.1-14.fc27.x86_64                    118/160 

  Verifying        : libcom_err-1.43.4-2.fc26.x86_64                    119/160 

  Verifying        : nss-pem-1.0.3-3.fc27.x86_64                        120/160 

  Verifying        : nss-softokn-3.31.0-2.fc27.x86_64                   121/160 

  Verifying        : nss-sysinit-3.31.0-2.fc27.x86_64                   122/160 

  Verifying        : keyutils-libs-1.5.10-1.fc27.x86_64                 123/160 

  Verifying        : libverto-0.2.6-7.fc26.x86_64                       124/160 

  Verifying        : nss-softokn-freebl-3.31.0-2.fc27.x86_64            125/160 

  Verifying        : gcc-c++-7.1.1-5.fc27.x86_64                        126/160 

  Verifying        : libmpc-1.0.2-6.fc26.x86_64                         127/160 

  Verifying        : mpfr-3.1.5-3.fc27.x86_64                           128/160 

  Verifying        : util-linux-2.30-1.fc27.x86_64                      129/160 

  Verifying        : libfdisk-2.30-1.fc27.x86_64                        130/160 

  Verifying        : libsmartcols-2.30-1.fc27.x86_64                    131/160 

  Verifying        : libutempter-1.1.6-9.fc26.x86_64                    132/160 

  Verifying        : pam-1.3.0-3.fc27.x86_64                            133/160 

  Verifying        : cracklib-2.9.6-5.fc26.x86_64                       134/160 

  Verifying        : gcc-7.1.1-5.fc27.x86_64                            135/160 

  Verifying        : cpp-7.1.1-5.fc27.x86_64                            136/160 

  Verifying        : isl-0.16.1-1.fc26.x86_64                           137/160 

  Verifying        : libgomp-7.1.1-5.fc27.x86_64                        138/160 

  Verifying        : unzip-6.0-33.fc26.x86_64                           139/160 

  Verifying        : gawk-4.1.4-3.fc26.x86_64                           140/160 

  Verifying        : libsigsegv-2.11-1.fc26.x86_64                      141/160 

  Verifying        : pkgconf-pkg-config-1.3.7-1.fc27.x86_64             142/160 

  Verifying        : pkgconf-1.3.7-1.fc27.x86_64                        143/160 

  Verifying        : pkgconf-m4-1.3.7-1.fc27.noarch                     144/160 

  Verifying        : libpkgconf-1.3.7-1.fc27.x86_64                     145/160 

  Verifying        : libpwquality-1.4.0-1.fc27.x86_64                   146/160 

  Verifying        : p11-kit-trust-0.23.7-1.fc27.x86_64                 147/160 

  Verifying        : libstdc++-devel-7.1.1-5.fc27.x86_64                148/160 

  Verifying        : glibc-devel-2.25.90-22.fc27.x86_64                 149/160 

  Verifying        : glibc-headers-2.25.90-22.fc27.x86_64               150/160 

  Verifying        : kernel-headers-4.13.0-0.rc0.git5.1.fc27.x86_64     151/160 

  Verifying        : libcrypt-nss-2.25.90-22.fc27.x86_64                152/160 

  Verifying        : curl-7.54.1-2.fc27.x86_64                          153/160 

  Verifying        : libmetalink-0.1.3-2.fc26.x86_64                    154/160 

  Verifying        : glibc-all-langpacks-2.25.90-22.fc27.x86_64         155/160 

  Verifying        : libcurl-7.54.1-2.fc27.x86_64                       156/160 

  Verifying        : libnghttp2-1.24.0-1.fc27.x86_64                    157/160 

  Verifying        : libpsl-0.17.0-2.fc26.x86_64                        158/160 

  Verifying        : libssh2-1.8.0-2.fc26.x86_64                        159/160 

  Verifying        : publicsuffix-list-dafsa-20170424-1.fc27.noarch     160/160 

Installed:
  audit-libs.x86_64 2.7.7-1.fc27                                                
  basesystem.noarch 11-3.fc26                                                   
  bash.x86_64 4.4.12-6.fc27                                                     
  binutils.x86_64 2.28-9.fc27                                                   
  bzip2.x86_64 1.0.6-22.fc26                                                    
  bzip2-libs.x86_64 1.0.6-22.fc26                                               
  ca-certificates.noarch 2017.2.14-2.fc27                                       
  chkconfig.x86_64 1.10-1.fc27                                                  
  coreutils.x86_64 8.27-10.fc27                                                 
  coreutils-common.x86_64 8.27-10.fc27                                          
  cpio.x86_64 2.12-4.fc26                                                       
  cpp.x86_64 7.1.1-5.fc27                                                       
  cracklib.x86_64 2.9.6-5.fc26                                                  
  crypto-policies.noarch 20170606-1.git7c32281.fc27                             
  curl.x86_64 7.54.1-2.fc27                                                     
  cyrus-sasl-lib.x86_64 2.1.26-32.fc27                                          
  diffutils.x86_64 3.6-1.fc27                                                   
  dwz.x86_64 0.12-3.fc26                                                        
  elfutils.x86_64 0.169-3.fc27                                                  
  elfutils-default-yama-scope.noarch 0.169-3.fc27                               
  elfutils-libelf.x86_64 0.169-3.fc27                                           
  elfutils-libs.x86_64 0.169-3.fc27                                             
  expat.x86_64 2.2.1-2.fc27                                                     
  fedora-release.noarch 27-0.2                                                  
  fedora-repos.noarch 27-0.2                                                    
  fedora-repos-rawhide.noarch 27-0.2                                            
  fedora-rpm-macros.noarch 26-2.fc26                                            
  file.x86_64 5.31-1.fc27                                                       
  file-libs.x86_64 5.31-1.fc27                                                  
  filesystem.x86_64 3.3-1.fc27                                                  
  findutils.x86_64 1:4.6.0-12.fc27                                              
  fpc-srpm-macros.noarch 1.1-2.fc26                                             
  gawk.x86_64 4.1.4-3.fc26                                                      
  gc.x86_64 7.6.0-4.fc27                                                        
  gcc.x86_64 7.1.1-5.fc27                                                       
  gcc-c++.x86_64 7.1.1-5.fc27                                                   
  gdb-headless.x86_64 8.0-17.fc27                                               
  gdbm.x86_64 1.13-1.fc27                                                       
  ghc-srpm-macros.noarch 1.4.2-5.fc26                                           
  glib2.x86_64 2.53.3-1.fc27                                                    
  glibc.x86_64 2.25.90-22.fc27                                                  
  glibc-all-langpacks.x86_64 2.25.90-22.fc27                                    
  glibc-common.x86_64 2.25.90-22.fc27                                           
  glibc-devel.x86_64 2.25.90-22.fc27                                            
  glibc-headers.x86_64 2.25.90-22.fc27                                          
  gmp.x86_64 1:6.1.2-4.fc27                                                     
  gnat-srpm-macros.noarch 4-2.fc26                                              
  gnupg2.x86_64 2.1.21-2.fc27                                                   
  gnutls.x86_64 3.5.14-1.fc27                                                   
  go-srpm-macros.noarch 2-9.fc27                                                
  grep.x86_64 3.1-1.fc27                                                        
  guile.x86_64 5:2.0.14-1.fc26                                                  
  gzip.x86_64 1.8-2.fc26                                                        
  info.x86_64 6.4-2.fc27                                                        
  isl.x86_64 0.16.1-1.fc26                                                      
  kernel-headers.x86_64 4.13.0-0.rc0.git5.1.fc27                                
  keyutils-libs.x86_64 1.5.10-1.fc27                                            
  krb5-libs.x86_64 1.15.1-14.fc27                                               
  libacl.x86_64 2.2.52-15.fc27                                                  
  libarchive.x86_64 3.3.1-1.fc27                                                
  libassuan.x86_64 2.4.3-2.fc26                                                 
  libatomic_ops.x86_64 7.4.6-1.fc27                                             
  libattr.x86_64 2.4.47-18.fc26                                                 
  libbabeltrace.x86_64 1.5.2-2.fc27                                             
  libblkid.x86_64 2.30-1.fc27                                                   
  libcap.x86_64 2.25-5.fc26                                                     
  libcap-ng.x86_64 0.7.8-3.fc26                                                 
  libcom_err.x86_64 1.43.4-2.fc26                                               
  libcrypt-nss.x86_64 2.25.90-22.fc27                                           
  libcurl.x86_64 7.54.1-2.fc27                                                  
  libdb.x86_64 5.3.28-24.fc27                                                   
  libdb-utils.x86_64 5.3.28-24.fc27                                             
  libfdisk.x86_64 2.30-1.fc27                                                   
  libffi.x86_64 3.1-12.fc27                                                     
  libgcc.x86_64 7.1.1-5.fc27                                                    
  libgcrypt.x86_64 1.7.8-1.fc27                                                 
  libgomp.x86_64 7.1.1-5.fc27                                                   
  libgpg-error.x86_64 1.27-1.fc27                                               
  libidn2.x86_64 2.0.2-1.fc27                                                   
  libipt.x86_64 1.6.1-2.fc27                                                    
  libksba.x86_64 1.3.5-3.fc26                                                   
  libmetalink.x86_64 0.1.3-2.fc26                                               
  libmount.x86_64 2.30-1.fc27                                                   
  libmpc.x86_64 1.0.2-6.fc26                                                    
  libnghttp2.x86_64 1.24.0-1.fc27                                               
  libpkgconf.x86_64 1.3.7-1.fc27                                                
  libpsl.x86_64 0.17.0-2.fc26                                                   
  libpwquality.x86_64 1.4.0-1.fc27                                              
  libselinux.x86_64 2.6-6.fc27                                                  
  libsemanage.x86_64 2.6-4.fc27                                                 
  libsepol.x86_64 2.6-1.fc26                                                    
  libsigsegv.x86_64 2.11-1.fc26                                                 
  libsmartcols.x86_64 2.30-1.fc27                                               
  libssh2.x86_64 1.8.0-2.fc26                                                   
  libstdc++.x86_64 7.1.1-5.fc27                                                 
  libstdc++-devel.x86_64 7.1.1-5.fc27                                           
  libtasn1.x86_64 4.12-1.fc27                                                   
  libtool-ltdl.x86_64 2.4.6-18.fc27                                             
  libunistring.x86_64 0.9.7-1.fc26                                              
  libusbx.x86_64 1.0.21-2.fc26                                                  
  libutempter.x86_64 1.1.6-9.fc26                                               
  libuuid.x86_64 2.30-1.fc27                                                    
  libverto.x86_64 0.2.6-7.fc26                                                  
  libxml2.x86_64 2.9.4-2.fc26                                                   
  lua-libs.x86_64 5.3.4-3.fc27                                                  
  lz4-libs.x86_64 1.7.5-4.fc27                                                  
  make.x86_64 1:4.2.1-2.fc26                                                    
  mpfr.x86_64 3.1.5-3.fc27                                                      
  ncurses.x86_64 6.0-10.20170520.fc27                                           
  ncurses-base.noarch 6.0-10.20170520.fc27                                      
  ncurses-libs.x86_64 6.0-10.20170520.fc27                                      
  nettle.x86_64 3.3-2.fc26                                                      
  npth.x86_64 1.5-1.fc27                                                        
  nspr.x86_64 4.15.0-1.fc27                                                     
  nss.x86_64 3.31.0-2.fc27                                                      
  nss-pem.x86_64 1.0.3-3.fc27                                                   
  nss-softokn.x86_64 3.31.0-2.fc27                                              
  nss-softokn-freebl.x86_64 3.31.0-2.fc27                                       
  nss-sysinit.x86_64 3.31.0-2.fc27                                              
  nss-util.x86_64 3.31.0-2.fc27                                                 
  ocaml-srpm-macros.noarch 4-2.fc26                                             
  openblas-srpm-macros.noarch 2-1.fc27                                          
  openldap.x86_64 2.4.45-1.fc27                                                 
  openssl-libs.x86_64 1:1.1.0f-5.fc27                                           
  p11-kit.x86_64 0.23.7-1.fc27                                                  
  p11-kit-trust.x86_64 0.23.7-1.fc27                                            
  pam.x86_64 1.3.0-3.fc27                                                       
  patch.x86_64 2.7.5-4.fc26                                                     
  pcre.x86_64 8.41-1.fc27                                                       
  perl-srpm-macros.noarch 1-23.fc27                                             
  pkgconf.x86_64 1.3.7-1.fc27                                                   
  pkgconf-m4.noarch 1.3.7-1.fc27                                                
  pkgconf-pkg-config.x86_64 1.3.7-1.fc27                                        
  popt.x86_64 1.16-8.fc26                                                       
  publicsuffix-list-dafsa.noarch 20170424-1.fc27                                
  python-srpm-macros.noarch 3-20.fc27                                           
  qt5-srpm-macros.noarch 5.9.0-2.fc27                                           
  readline.x86_64 7.0-5.fc26                                                    
  redhat-rpm-config.noarch 64-1.fc27                                            
  rpm.x86_64 4.13.0.1-31.fc27                                                   
  rpm-build.x86_64 4.13.0.1-31.fc27                                             
  rpm-build-libs.x86_64 4.13.0.1-31.fc27                                        
  rpm-libs.x86_64 4.13.0.1-31.fc27                                              
  rpm-plugin-selinux.x86_64 4.13.0.1-31.fc27                                    
  sed.x86_64 4.4-1.fc26                                                         
  setup.noarch 2.10.5-2.fc26                                                    
  shadow-utils.x86_64 2:4.3.1-3.fc26                                            
  sqlite-libs.x86_64 3.19.3-1.fc27                                              
  system-python-libs.x86_64 3.6.1-10.fc27                                       
  systemd-libs.x86_64 233-6.fc27                                                
  tar.x86_64 2:1.29-4.fc26                                                      
  tzdata.noarch 2017b-1.fc27                                                    
  unzip.x86_64 6.0-33.fc26                                                      
  ustr.x86_64 1.0.4-22.fc26                                                     
  util-linux.x86_64 2.30-1.fc27                                                 
  which.x86_64 2.21-2.fc26                                                      
  xz.x86_64 5.2.3-2.fc26                                                        
  xz-libs.x86_64 5.2.3-2.fc26                                                   
  zip.x86_64 3.0-18.fc26                                                        
  zlib.x86_64 1.2.11-2.fc26                                                     

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/mmseq-1.0.8a-19.fc27.src.rpm
Finish: rpmbuild -bs
Finish: buildsrpm
INFO: Done(mmseq.spec) Config(child) 1 minutes 0 seconds
INFO: Results and/or logs in: intermediate-srpm
Finish: run
INFO: unmounting tmpfs.
WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default...
INFO: mock.py version 1.4.2 starting (python version = 3.6.1)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: compress_logs: initialized
Finish: init plugins
Start: run
INFO: Start(intermediate-srpm/mmseq-1.0.8a-19.fc27.src.rpm)  Config(579095-fedora-rawhide-x86_64)
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/579095-fedora-rawhide-x86_64/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.2
INFO: Mock Version: 1.4.2
Finish: chroot init
Start: build phase for mmseq-1.0.8a-19.fc27.src.rpm
Start: build setup for mmseq-1.0.8a-19.fc27.src.rpm
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/mmseq-1.0.8a-19.fc27.src.rpm
"Copr repository"     0% [                    ] ---  B/s |   0  B     --:-- ETA
"Copr repository"                               3.0 MB/s | 158 kB     00:00    
fedora                0% [                    ] ---  B/s |   0  B     --:-- ETA
fedora               20% [====                ]  38 MB/s |  11 MB     00:01 ETA
fedora               36% [=======             ]  37 MB/s |  21 MB     00:00 ETA
fedora               75% [===============     ]  39 MB/s |  42 MB     00:00 ETA
fedora                                           41 MB/s |  56 MB     00:01    
Last metadata expiration check: 0:00:00 ago on Thu 13 Jul 2017 09:09:30 PM UTC.
Dependencies resolved.
================================================================================
 Package                   Arch      Version                 Repository    Size
================================================================================
Installing:
 armadillo-devel           x86_64    7.900.1-1.fc27          fedora       1.2 M
 boost-devel               x86_64    1.63.0-9.fc27           fedora       9.2 M
 gsl-devel                 x86_64    2.4-1.fc27              copr_base    563 k
 perl-generators           noarch    1.10-4.fc27             fedora        16 k
 samtools-devel            x86_64    0.1.19-10.fc26          fedora        36 k
 zlib-devel                x86_64    1.2.11-2.fc26           fedora        56 k
Installing dependencies:
 SuperLU                   x86_64    5.2.0-2.fc26            fedora       189 k
 SuperLU-devel             x86_64    5.2.0-2.fc26            fedora        27 k
 armadillo                 x86_64    7.900.1-1.fc27          fedora        28 k
 arpack                    x86_64    3.5.0-2.fc27            fedora       190 k
 arpack-devel              x86_64    3.5.0-2.fc27            fedora        11 k
 atlas                     x86_64    3.10.2-16.fc26          fedora       6.2 M
 autoconf                  noarch    2.69-24.fc26            fedora       709 k
 automake                  noarch    1.15-9.fc26             fedora       695 k
 blas                      x86_64    3.6.1-4.fc26            fedora       394 k
 blas-devel                x86_64    3.6.1-4.fc26            fedora        17 k
 boost                     x86_64    1.63.0-9.fc27           fedora        47 k
 boost-atomic              x86_64    1.63.0-9.fc27           fedora        49 k
 boost-chrono              x86_64    1.63.0-9.fc27           fedora        52 k
 boost-container           x86_64    1.63.0-9.fc27           fedora        78 k
 boost-context             x86_64    1.63.0-9.fc27           fedora        51 k
 boost-coroutine           x86_64    1.63.0-9.fc27           fedora        63 k
 boost-date-time           x86_64    1.63.0-9.fc27           fedora        62 k
 boost-fiber               x86_64    1.63.0-9.fc27           fedora        74 k
 boost-filesystem          x86_64    1.63.0-9.fc27           fedora        78 k
 boost-graph               x86_64    1.63.0-9.fc27           fedora       142 k
 boost-iostreams           x86_64    1.63.0-9.fc27           fedora        73 k
 boost-locale              x86_64    1.63.0-9.fc27           fedora       280 k
 boost-log                 x86_64    1.63.0-9.fc27           fedora       459 k
 boost-math                x86_64    1.63.0-9.fc27           fedora       298 k
 boost-numpy               x86_64    1.63.0-9.fc27           fedora        60 k
 boost-program-options     x86_64    1.63.0-9.fc27           fedora       171 k
 boost-python              x86_64    1.63.0-9.fc27           fedora       127 k
 boost-random              x86_64    1.63.0-9.fc27           fedora        55 k
 boost-regex               x86_64    1.63.0-9.fc27           fedora       298 k
 boost-serialization       x86_64    1.63.0-9.fc27           fedora       156 k
 boost-signals             x86_64    1.63.0-9.fc27           fedora        73 k
 boost-system              x86_64    1.63.0-9.fc27           fedora        52 k
 boost-test                x86_64    1.63.0-9.fc27           fedora       268 k
 boost-thread              x86_64    1.63.0-9.fc27           fedora        91 k
 boost-timer               x86_64    1.63.0-9.fc27           fedora        54 k
 boost-type_erasure        x86_64    1.63.0-9.fc27           fedora        63 k
 boost-wave                x86_64    1.63.0-9.fc27           fedora       224 k
 emacs-filesystem          noarch    1:25.2-2.fc27           fedora        66 k
 gcc-gfortran              x86_64    7.1.1-5.fc27            fedora        10 M
 groff-base                x86_64    1.22.3-9.fc26           fedora       1.0 M
 gsl                       x86_64    2.4-1.fc27              copr_base    998 k
 hdf5                      x86_64    1.8.18-5.fc26           fedora       1.7 M
 hdf5-devel                x86_64    1.8.18-5.fc26           fedora       923 k
 lapack                    x86_64    3.6.1-4.fc26            fedora       6.0 M
 lapack-devel              x86_64    3.6.1-4.fc26            fedora        80 k
 libgfortran               x86_64    7.1.1-5.fc27            fedora       532 k
 libicu                    x86_64    57.1-4.fc26             fedora       8.4 M
 libicu-devel              x86_64    57.1-4.fc26             fedora       914 k
 libquadmath               x86_64    7.1.1-5.fc27            fedora       179 k
 libquadmath-devel         x86_64    7.1.1-5.fc27            fedora        35 k
 m4                        x86_64    1.4.18-3.fc26           fedora       217 k
 openblas                  x86_64    0.2.19-11.fc27          fedora       4.1 M
 openblas-devel            x86_64    0.2.19-11.fc27          fedora        83 k
 openblas-openmp           x86_64    0.2.19-11.fc27          fedora       4.2 M
 openblas-openmp64         x86_64    0.2.19-11.fc27          fedora       4.1 M
 openblas-openmp64_        x86_64    0.2.19-11.fc27          fedora       4.1 M
 openblas-serial64         x86_64    0.2.19-11.fc27          fedora       4.0 M
 openblas-serial64_        x86_64    0.2.19-11.fc27          fedora       4.0 M
 openblas-threads          x86_64    0.2.19-11.fc27          fedora       4.2 M
 openblas-threads64        x86_64    0.2.19-11.fc27          fedora       4.1 M
 openblas-threads64_       x86_64    0.2.19-11.fc27          fedora       4.1 M
 perl                      x86_64    4:5.26.0-394.fc27       fedora       6.2 M
 perl-Carp                 noarch    1.42-393.fc27           fedora        28 k
 perl-Data-Dumper          x86_64    2.167-394.fc27          fedora        55 k
 perl-Encode               x86_64    4:2.91-11.fc27          fedora       1.5 M
 perl-Errno                x86_64    1.28-394.fc27           fedora        69 k
 perl-Exporter             noarch    5.72-394.fc27           fedora        32 k
 perl-Fedora-VSP           noarch    0.001-7.fc27            fedora        23 k
 perl-File-Path            noarch    2.14-1.fc27             fedora        36 k
 perl-File-Temp            noarch    0.230.400-393.fc27      fedora        61 k
 perl-Getopt-Long          noarch    1:2.50-2.fc27           fedora        61 k
 perl-HTTP-Tiny            noarch    0.070-393.fc27          fedora        56 k
 perl-IO                   x86_64    1.38-394.fc27           fedora       134 k
 perl-MIME-Base64          x86_64    3.15-393.fc27           fedora        28 k
 perl-PathTools            x86_64    3.67-393.fc27           fedora        88 k
 perl-Pod-Escapes          noarch    1:1.07-393.fc27         fedora        19 k
 perl-Pod-Perldoc          noarch    3.28-394.fc27           fedora        87 k
 perl-Pod-Simple           noarch    1:3.35-393.fc27         fedora       211 k
 perl-Pod-Usage            noarch    4:1.69-393.fc27         fedora        33 k
 perl-Scalar-List-Utils    x86_64    3:1.48-1.fc27           fedora        65 k
 perl-Socket               x86_64    4:2.024-3.fc27          fedora        56 k
 perl-Storable             x86_64    1:2.62-393.fc27         fedora        83 k
 perl-Term-ANSIColor       noarch    4.06-394.fc27           fedora        44 k
 perl-Term-Cap             noarch    1.17-393.fc27           fedora        21 k
 perl-Text-ParseWords      noarch    3.30-393.fc27           fedora        16 k
 perl-Text-Tabs+Wrap       noarch    2013.0523-393.fc27      fedora        22 k
 perl-Thread-Queue         noarch    3.12-393.fc27           fedora        22 k
 perl-Time-Local           noarch    1:1.250-393.fc27        fedora        30 k
 perl-Unicode-Normalize    x86_64    1.25-393.fc27           fedora        79 k
 perl-constant             noarch    1.33-394.fc27           fedora        24 k
 perl-libs                 x86_64    4:5.26.0-394.fc27       fedora       1.5 M
 perl-macros               x86_64    4:5.26.0-394.fc27       fedora        65 k
 perl-parent               noarch    1:0.236-393.fc27        fedora        18 k
 perl-podlators            noarch    4.09-393.fc27           fedora       114 k
 perl-threads              x86_64    1:2.16-2.fc27           fedora        58 k
 perl-threads-shared       x86_64    1.57-2.fc27             fedora        45 k
 python2                   x86_64    2.7.13-12.fc27          fedora        98 k
 python2-libs              x86_64    2.7.13-12.fc27          fedora       6.3 M
 python2-nose              noarch    1.3.7-13.fc26           fedora       266 k
 python2-numpy             x86_64    1:1.13.1-1.fc27         fedora       3.5 M
 python2-pip               noarch    9.0.1-10.fc27           fedora       1.8 M
 python2-setuptools        noarch    36.0.1-1.fc27           fedora       595 k
 samtools-libs             x86_64    0.1.19-10.fc26          fedora       104 k

Transaction Summary
================================================================================
Install  109 Packages

Total download size: 114 M
Installed size: 619 M
Downloading Packages:
(1/109): perl-genera  0% [                    ] ---  B/s |   0  B     --:-- ETA
(1/109): perl-generators-1.10-4.fc27.noarch.rpm  66 kB/s |  16 kB     00:00    
(2-3/109): boost-dev  0% [                    ]  66 kB/s |  16 kB     29:39 ETA
(2/109): gsl-devel-2.4-1.fc27.x86_64.rpm        6.5 MB/s | 563 kB     00:00    
(3-4/109): boost-dev  1% [                    ] 337 kB/s | 1.3 MB     05:43 ETA
(3/109): armadillo-devel-7.900.1-1.fc27.x86_64. 2.3 MB/s | 1.2 MB     00:00    
(4-5/109): samtools-  3% [-                   ] 885 kB/s | 4.1 MB     02:07 ETA
(4/109): samtools-devel-0.1.19-10.fc26.x86_64.r 103 kB/s |  36 kB     00:00    
(5-6/109): zlib-deve  4% [-                   ] 1.1 MB/s | 5.4 MB     01:39 ETA
(5/109): boost-devel-1.63.0-9.fc27.x86_64.rpm   9.6 MB/s | 9.2 MB     00:00    
(6-7/109): zlib-deve  9% [=-                  ] 2.2 MB/s |  11 MB     00:47 ETA
(6/109): zlib-devel-1.2.11-2.fc26.x86_64.rpm    131 kB/s |  56 kB     00:00    
(7-8/109): perl-5.26  9% [=-                  ] 2.2 MB/s |  11 MB     00:47 ETA
(7/109): perl-Fedora-VSP-0.001-7.fc27.noarch.rp 299 kB/s |  23 kB     00:00    
(8-9/109): perl-5.26 10% [==                  ] 2.3 MB/s |  12 MB     00:44 ETA
(8/109): perl-macros-5.26.0-394.fc27.x86_64.rpm 721 kB/s |  65 kB     00:00    
(9-10/109): perl-5.2 10% [==                  ] 2.4 MB/s |  13 MB     00:42 ETA
(9/109): armadillo-7.900.1-1.fc27.x86_64.rpm    567 kB/s |  28 kB     00:00    
(10-11/109): perl-5. 11% [==                  ] 2.5 MB/s |  13 MB     00:40 ETA
(10/109): boost-1.63.0-9.fc27.x86_64.rpm        832 kB/s |  47 kB     00:00    
(11-12/109): perl-5. 11% [==                  ] 2.6 MB/s |  13 MB     00:39 ETA
(11/109): boost-atomic-1.63.0-9.fc27.x86_64.rpm 1.1 MB/s |  49 kB     00:00    
(12-13/109): perl-5. 11% [==                  ] 2.6 MB/s |  14 MB     00:38 ETA
(12/109): boost-container-1.63.0-9.fc27.x86_64. 563 kB/s |  78 kB     00:00    
(13-14/109): perl-5. 13% [==-                 ] 2.9 MB/s |  15 MB     00:34 ETA
(13/109): boost-chrono-1.63.0-9.fc27.x86_64.rpm 316 kB/s |  52 kB     00:00    
(14-15/109): perl-5. 13% [==-                 ] 2.9 MB/s |  15 MB     00:34 ETA
(14/109): boost-coroutine-1.63.0-9.fc27.x86_64. 1.5 MB/s |  63 kB     00:00    
(15-16/109): perl-5. 13% [==-                 ] 3.0 MB/s |  16 MB     00:33 ETA
(15/109): boost-context-1.63.0-9.fc27.x86_64.rp 1.0 MB/s |  51 kB     00:00    
(16-17/109): perl-5. 14% [==-                 ] 3.0 MB/s |  16 MB     00:32 ETA
(16/109): boost-fiber-1.63.0-9.fc27.x86_64.rpm  1.3 MB/s |  74 kB     00:00    
(17-18/109): perl-5. 14% [==-                 ] 3.1 MB/s |  17 MB     00:31 ETA
(17/109): boost-date-time-1.63.0-9.fc27.x86_64. 890 kB/s |  62 kB     00:00    
(18-19/109): perl-5. 14% [==-                 ] 3.1 MB/s |  17 MB     00:31 ETA
(18/109): boost-filesystem-1.63.0-9.fc27.x86_64 841 kB/s |  78 kB     00:00    
(19-20/109): perl-5. 15% [===                 ] 3.3 MB/s |  18 MB     00:29 ETA
(19/109): perl-5.26.0-394.fc27.x86_64.rpm       7.7 MB/s | 6.2 MB     00:00    
(20-21/109): boost-g 15% [===                 ] 3.3 MB/s |  18 MB     00:29 ETA
(20/109): boost-graph-1.63.0-9.fc27.x86_64.rpm  1.2 MB/s | 142 kB     00:00    
(21-22/109): boost-i 15% [===                 ] 3.3 MB/s |  18 MB     00:29 ETA
(21/109): boost-iostreams-1.63.0-9.fc27.x86_64. 1.4 MB/s |  73 kB     00:00    
(22-23/109): boost-l 15% [===                 ] 3.3 MB/s |  18 MB     00:29 ETA
(22/109): boost-log-1.63.0-9.fc27.x86_64.rpm     16 MB/s | 459 kB     00:00    
(23-24/109): boost-l 16% [===                 ] 3.4 MB/s |  19 MB     00:28 ETA
(23/109): boost-locale-1.63.0-9.fc27.x86_64.rpm 4.9 MB/s | 280 kB     00:00    
(24-25/109): boost-m 16% [===                 ] 3.4 MB/s |  19 MB     00:27 ETA
(24/109): boost-math-1.63.0-9.fc27.x86_64.rpm   6.0 MB/s | 298 kB     00:00    
(25-26/109): boost-n 16% [===                 ] 3.5 MB/s |  19 MB     00:27 ETA
(25/109): boost-numpy-1.63.0-9.fc27.x86_64.rpm  1.6 MB/s |  60 kB     00:00    
(26-27/109): boost-p 16% [===                 ] 3.5 MB/s |  19 MB     00:27 ETA
(26/109): boost-program-options-1.63.0-9.fc27.x 4.6 MB/s | 171 kB     00:00    
(27-28/109): boost-p 16% [===                 ] 3.5 MB/s |  19 MB     00:27 ETA
(27/109): boost-random-1.63.0-9.fc27.x86_64.rpm 2.0 MB/s |  55 kB     00:00    
(28-29/109): boost-p 16% [===                 ] 3.5 MB/s |  19 MB     00:27 ETA
(28/109): boost-python-1.63.0-9.fc27.x86_64.rpm 3.3 MB/s | 127 kB     00:00    
(29-30/109): boost-r 17% [===                 ] 3.5 MB/s |  20 MB     00:26 ETA
(29/109): boost-regex-1.63.0-9.fc27.x86_64.rpm   10 MB/s | 298 kB     00:00    
(30-31/109): boost-s 17% [===                 ] 3.6 MB/s |  20 MB     00:26 ETA
(30/109): boost-signals-1.63.0-9.fc27.x86_64.rp 5.1 MB/s |  73 kB     00:00    
(31-32/109): boost-s 17% [===                 ] 3.6 MB/s |  20 MB     00:26 ETA
(31/109): boost-system-1.63.0-9.fc27.x86_64.rpm 7.7 MB/s |  52 kB     00:00    
(32-33/109): boost-s 17% [===                 ] 3.6 MB/s |  20 MB     00:26 ETA
(32/109): boost-serialization-1.63.0-9.fc27.x86 3.0 MB/s | 156 kB     00:00    
(33-34/109): boost-t 17% [===-                ] 3.6 MB/s |  20 MB     00:26 ETA
(33/109): boost-timer-1.63.0-9.fc27.x86_64.rpm  1.4 MB/s |  54 kB     00:00    
(34-35/109): boost-t 17% [===-                ] 3.6 MB/s |  20 MB     00:26 ETA
(34/109): boost-type_erasure-1.63.0-9.fc27.x86_ 4.4 MB/s |  63 kB     00:00    
(35-36/109): boost-t 17% [===-                ] 3.6 MB/s |  20 MB     00:25 ETA
(35/109): boost-test-1.63.0-9.fc27.x86_64.rpm   3.9 MB/s | 268 kB     00:00    
(36-37/109): boost-w 17% [===-                ] 3.6 MB/s |  21 MB     00:25 ETA
(36/109): boost-wave-1.63.0-9.fc27.x86_64.rpm   5.6 MB/s | 224 kB     00:00    
(37-38/109): libicu- 18% [===-                ] 3.7 MB/s |  21 MB     00:25 ETA
(37/109): libquadmath-devel-7.1.1-5.fc27.x86_64 1.8 MB/s |  35 kB     00:00    
(38-39/109): libicu- 18% [===-                ] 3.8 MB/s |  21 MB     00:24 ETA
(38/109): libicu-devel-57.1-4.fc26.x86_64.rpm    17 MB/s | 914 kB     00:00    
(39-40/109): gsl-2.4 19% [===-                ] 3.9 MB/s |  22 MB     00:23 ETA
(39/109): gsl-2.4-1.fc27.x86_64.rpm              34 MB/s | 998 kB     00:00    
(40-41/109): automak 19% [===-                ] 4.0 MB/s |  23 MB     00:22 ETA
(40/109): samtools-libs-0.1.19-10.fc26.x86_64.r 3.9 MB/s | 104 kB     00:00    
(41-42/109): automak 20% [====                ] 4.1 MB/s |  23 MB     00:22 ETA
(41/109): perl-Carp-1.42-393.fc27.noarch.rpm    1.3 MB/s |  28 kB     00:00    
(42-43/109): automak 20% [====                ] 4.1 MB/s |  23 MB     00:22 ETA
(42/109): automake-1.15-9.fc26.noarch.rpm        12 MB/s | 695 kB     00:00    
(43-44/109): perl-Ex 20% [====                ] 4.2 MB/s |  23 MB     00:21 ETA
(43/109): perl-Exporter-5.72-394.fc27.noarch.rp 1.2 MB/s |  32 kB     00:00    
(44-45/109): perl-Fi 20% [====                ] 4.2 MB/s |  23 MB     00:21 ETA
(44/109): perl-File-Path-2.14-1.fc27.noarch.rpm 1.3 MB/s |  36 kB     00:00    
(45-46/109): perl-IO 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(45/109): perl-IO-1.38-394.fc27.x86_64.rpm      7.4 MB/s | 134 kB     00:00    
(46-47/109): perl-Pa 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(46/109): perl-PathTools-3.67-393.fc27.x86_64.r 4.0 MB/s |  88 kB     00:00    
(47-48/109): perl-Sc 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(47/109): perl-Scalar-List-Utils-1.48-1.fc27.x8 3.4 MB/s |  65 kB     00:00    
(48-49/109): perl-Te 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(48/109): perl-Text-Tabs+Wrap-2013.0523-393.fc2 1.5 MB/s |  22 kB     00:00    
(49-50/109): perl-Un 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(49/109): perl-Unicode-Normalize-1.25-393.fc27. 7.6 MB/s |  79 kB     00:00    
(50-51/109): perl-co 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(50/109): perl-constant-1.33-394.fc27.noarch.rp 3.8 MB/s |  24 kB     00:00    
(51-52/109): perl-li 20% [====                ] 4.2 MB/s |  24 MB     00:21 ETA
(51/109): perl-parent-0.236-393.fc27.noarch.rpm 1.1 MB/s |  18 kB     00:00    
(52-53/109): perl-li 21% [====                ] 4.3 MB/s |  24 MB     00:20 ETA
(52/109): perl-threads-2.16-2.fc27.x86_64.rpm   2.7 MB/s |  58 kB     00:00    
(53-54/109): perl-li 21% [====                ] 4.4 MB/s |  25 MB     00:20 ETA
(53/109): perl-threads-shared-1.57-2.fc27.x86_6 2.1 MB/s |  45 kB     00:00    
(54-55/109): perl-li 21% [====                ] 4.4 MB/s |  25 MB     00:20 ETA
(54/109): SuperLU-5.2.0-2.fc26.x86_64.rpm       6.3 MB/s | 189 kB     00:00    
(55-56/109): arpack- 22% [====                ] 4.5 MB/s |  26 MB     00:19 ETA
(55/109): perl-libs-5.26.0-394.fc27.x86_64.rpm   17 MB/s | 1.5 MB     00:00    
(56-57/109): lapack- 22% [====                ] 4.5 MB/s |  26 MB     00:19 ETA
(56/109): arpack-3.5.0-2.fc27.x86_64.rpm        1.6 MB/s | 190 kB     00:00    
(57-58/109): openbla 24% [====-               ] 4.9 MB/s |  28 MB     00:17 ETA
(57/109): boost-thread-1.63.0-9.fc27.x86_64.rpm 1.0 MB/s |  91 kB     00:00    
(58-59/109): openbla 25% [=====               ] 5.2 MB/s |  30 MB     00:16 ETA
(58/109): lapack-3.6.1-4.fc26.x86_64.rpm         21 MB/s | 6.0 MB     00:00    
(59-60/109): libicu- 28% [=====-              ] 5.7 MB/s |  33 MB     00:14 ETA
(59/109): libquadmath-7.1.1-5.fc27.x86_64.rpm   1.8 MB/s | 179 kB     00:00    
(60-61/109): libicu- 31% [======              ] 6.2 MB/s |  36 MB     00:12 ETA
(60/109): openblas-openmp-0.2.19-11.fc27.x86_64  11 MB/s | 4.2 MB     00:00    
(61-62/109): python2 33% [======-             ] 6.6 MB/s |  38 MB     00:11 ETA
(61/109): autoconf-2.69-24.fc26.noarch.rpm      5.1 MB/s | 709 kB     00:00    
(62-63/109): python2 38% [=======-            ] 7.6 MB/s |  44 MB     00:09 ETA
(62/109): perl-Errno-1.28-394.fc27.x86_64.rpm   1.4 MB/s |  69 kB     00:00    
(63-64/109): python2 40% [========            ] 7.9 MB/s |  46 MB     00:08 ETA
(63/109): python2-libs-2.7.13-12.fc27.x86_64.rp  20 MB/s | 6.3 MB     00:00    
(64-65/109): perl-Ge 42% [========            ] 8.2 MB/s |  48 MB     00:08 ETA
(64/109): libicu-57.1-4.fc26.x86_64.rpm          14 MB/s | 8.4 MB     00:00    
(65-66/109): perl-Th 45% [=========           ] 8.8 MB/s |  52 MB     00:07 ETA
(65/109): perl-Thread-Queue-3.12-393.fc27.noarc 257 kB/s |  22 kB     00:00    
(66-67/109): perl-So 45% [=========           ] 8.8 MB/s |  52 MB     00:07 ETA
(66/109): perl-Getopt-Long-2.50-2.fc27.noarch.r 276 kB/s |  61 kB     00:00    
(67-68/109): atlas-3 45% [=========           ] 8.7 MB/s |  52 MB     00:07 ETA
(67/109): perl-Socket-2.024-3.fc27.x86_64.rpm   750 kB/s |  56 kB     00:00    
(68-69/109): libgfor 45% [=========           ] 8.7 MB/s |  52 MB     00:07 ETA
(68/109): libgfortran-7.1.1-5.fc27.x86_64.rpm   7.8 MB/s | 532 kB     00:00    
(69-70/109): openbla 47% [=========-          ] 9.1 MB/s |  55 MB     00:06 ETA
(69/109): atlas-3.10.2-16.fc26.x86_64.rpm        18 MB/s | 6.2 MB     00:00    
(70-71/109): openbla 54% [==========-         ]  10 MB/s |  62 MB     00:05 ETA
(70/109): openblas-threads-0.2.19-11.fc27.x86_6 9.3 MB/s | 4.2 MB     00:00    
(71-72/109): openbla 58% [===========-        ]  11 MB/s |  67 MB     00:04 ETA
(71/109): openblas-0.2.19-11.fc27.x86_64.rpm    7.8 MB/s | 4.1 MB     00:00    
(72-73/109): openbla 58% [===========-        ]  11 MB/s |  67 MB     00:04 ETA
(72/109): openblas-threads64_-0.2.19-11.fc27.x8 8.0 MB/s | 4.1 MB     00:00    
(73-74/109): blas-3. 62% [============        ]  11 MB/s |  71 MB     00:03 ETA
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Installed:
  armadillo-devel.x86_64 7.900.1-1.fc27                                         
  boost-devel.x86_64 1.63.0-9.fc27                                              
  gsl-devel.x86_64 2.4-1.fc27                                                   
  perl-generators.noarch 1.10-4.fc27                                            
  samtools-devel.x86_64 0.1.19-10.fc26                                          
  zlib-devel.x86_64 1.2.11-2.fc26                                               
  SuperLU.x86_64 5.2.0-2.fc26                                                   
  SuperLU-devel.x86_64 5.2.0-2.fc26                                             
  armadillo.x86_64 7.900.1-1.fc27                                               
  arpack.x86_64 3.5.0-2.fc27                                                    
  arpack-devel.x86_64 3.5.0-2.fc27                                              
  atlas.x86_64 3.10.2-16.fc26                                                   
  autoconf.noarch 2.69-24.fc26                                                  
  automake.noarch 1.15-9.fc26                                                   
  blas.x86_64 3.6.1-4.fc26                                                      
  blas-devel.x86_64 3.6.1-4.fc26                                                
  boost.x86_64 1.63.0-9.fc27                                                    
  boost-atomic.x86_64 1.63.0-9.fc27                                             
  boost-chrono.x86_64 1.63.0-9.fc27                                             
  boost-container.x86_64 1.63.0-9.fc27                                          
  boost-context.x86_64 1.63.0-9.fc27                                            
  boost-coroutine.x86_64 1.63.0-9.fc27                                          
  boost-date-time.x86_64 1.63.0-9.fc27                                          
  boost-fiber.x86_64 1.63.0-9.fc27                                              
  boost-filesystem.x86_64 1.63.0-9.fc27                                         
  boost-graph.x86_64 1.63.0-9.fc27                                              
  boost-iostreams.x86_64 1.63.0-9.fc27                                          
  boost-locale.x86_64 1.63.0-9.fc27                                             
  boost-log.x86_64 1.63.0-9.fc27                                                
  boost-math.x86_64 1.63.0-9.fc27                                               
  boost-numpy.x86_64 1.63.0-9.fc27                                              
  boost-program-options.x86_64 1.63.0-9.fc27                                    
  boost-python.x86_64 1.63.0-9.fc27                                             
  boost-random.x86_64 1.63.0-9.fc27                                             
  boost-regex.x86_64 1.63.0-9.fc27                                              
  boost-serialization.x86_64 1.63.0-9.fc27                                      
  boost-signals.x86_64 1.63.0-9.fc27                                            
  boost-system.x86_64 1.63.0-9.fc27                                             
  boost-test.x86_64 1.63.0-9.fc27                                               
  boost-thread.x86_64 1.63.0-9.fc27                                             
  boost-timer.x86_64 1.63.0-9.fc27                                              
  boost-type_erasure.x86_64 1.63.0-9.fc27                                       
  boost-wave.x86_64 1.63.0-9.fc27                                               
  emacs-filesystem.noarch 1:25.2-2.fc27                                         
  gcc-gfortran.x86_64 7.1.1-5.fc27                                              
  groff-base.x86_64 1.22.3-9.fc26                                               
  gsl.x86_64 2.4-1.fc27                                                         
  hdf5.x86_64 1.8.18-5.fc26                                                     
  hdf5-devel.x86_64 1.8.18-5.fc26                                               
  lapack.x86_64 3.6.1-4.fc26                                                    
  lapack-devel.x86_64 3.6.1-4.fc26                                              
  libgfortran.x86_64 7.1.1-5.fc27                                               
  libicu.x86_64 57.1-4.fc26                                                     
  libicu-devel.x86_64 57.1-4.fc26                                               
  libquadmath.x86_64 7.1.1-5.fc27                                               
  libquadmath-devel.x86_64 7.1.1-5.fc27                                         
  m4.x86_64 1.4.18-3.fc26                                                       
  openblas.x86_64 0.2.19-11.fc27                                                
  openblas-devel.x86_64 0.2.19-11.fc27                                          
  openblas-openmp.x86_64 0.2.19-11.fc27                                         
  openblas-openmp64.x86_64 0.2.19-11.fc27                                       
  openblas-openmp64_.x86_64 0.2.19-11.fc27                                      
  openblas-serial64.x86_64 0.2.19-11.fc27                                       
  openblas-serial64_.x86_64 0.2.19-11.fc27                                      
  openblas-threads.x86_64 0.2.19-11.fc27                                        
  openblas-threads64.x86_64 0.2.19-11.fc27                                      
  openblas-threads64_.x86_64 0.2.19-11.fc27                                     
  perl.x86_64 4:5.26.0-394.fc27                                                 
  perl-Carp.noarch 1.42-393.fc27                                                
  perl-Data-Dumper.x86_64 2.167-394.fc27                                        
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  perl-Errno.x86_64 1.28-394.fc27                                               
  perl-Exporter.noarch 5.72-394.fc27                                            
  perl-Fedora-VSP.noarch 0.001-7.fc27                                           
  perl-File-Path.noarch 2.14-1.fc27                                             
  perl-File-Temp.noarch 0.230.400-393.fc27                                      
  perl-Getopt-Long.noarch 1:2.50-2.fc27                                         
  perl-HTTP-Tiny.noarch 0.070-393.fc27                                          
  perl-IO.x86_64 1.38-394.fc27                                                  
  perl-MIME-Base64.x86_64 3.15-393.fc27                                         
  perl-PathTools.x86_64 3.67-393.fc27                                           
  perl-Pod-Escapes.noarch 1:1.07-393.fc27                                       
  perl-Pod-Perldoc.noarch 3.28-394.fc27                                         
  perl-Pod-Simple.noarch 1:3.35-393.fc27                                        
  perl-Pod-Usage.noarch 4:1.69-393.fc27                                         
  perl-Scalar-List-Utils.x86_64 3:1.48-1.fc27                                   
  perl-Socket.x86_64 4:2.024-3.fc27                                             
  perl-Storable.x86_64 1:2.62-393.fc27                                          
  perl-Term-ANSIColor.noarch 4.06-394.fc27                                      
  perl-Term-Cap.noarch 1.17-393.fc27                                            
  perl-Text-ParseWords.noarch 3.30-393.fc27                                     
  perl-Text-Tabs+Wrap.noarch 2013.0523-393.fc27                                 
  perl-Thread-Queue.noarch 3.12-393.fc27                                        
  perl-Time-Local.noarch 1:1.250-393.fc27                                       
  perl-Unicode-Normalize.x86_64 1.25-393.fc27                                   
  perl-constant.noarch 1.33-394.fc27                                            
  perl-libs.x86_64 4:5.26.0-394.fc27                                            
  perl-macros.x86_64 4:5.26.0-394.fc27                                          
  perl-parent.noarch 1:0.236-393.fc27                                           
  perl-podlators.noarch 4.09-393.fc27                                           
  perl-threads.x86_64 1:2.16-2.fc27                                             
  perl-threads-shared.x86_64 1.57-2.fc27                                        
  python2.x86_64 2.7.13-12.fc27                                                 
  python2-libs.x86_64 2.7.13-12.fc27                                            
  python2-nose.noarch 1.3.7-13.fc26                                             
  python2-numpy.x86_64 1:1.13.1-1.fc27                                          
  python2-pip.noarch 9.0.1-10.fc27                                              
  python2-setuptools.noarch 36.0.1-1.fc27                                       
  samtools-libs.x86_64 0.1.19-10.fc26                                           

Complete!
Finish: build setup for mmseq-1.0.8a-19.fc27.src.rpm
Start: rpmbuild mmseq-1.0.8a-19.fc27.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Y10NbL
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.8a
+ /usr/bin/unzip -qq /builddir/build/SOURCES/1.0.8a.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.8a
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (mmseq-sam-header.patch):
+ echo 'Patch #0 (mmseq-sam-header.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mmseq-sam-header.patch --fuzz=0
patching file src/bam2hits.cpp
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
Patch #3 (mmseq-iostream-c++11.patch):
+ echo 'Patch #3 (mmseq-iostream-c++11.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mmseq-iostream-c++11.patch --fuzz=0
patching file src/hitsio.cpp
Patch #4 (mmseq-static-data-members-initialization-c++11.patch):
+ echo 'Patch #4 (mmseq-static-data-members-initialization-c++11.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mmseq-static-data-members-initialization-c++11.patch --fuzz=0
patching file src/bms.hpp
+ rm bin/bam2hits-linux bin/extract_transcripts-linux bin/hitstools-linux bin/mmcollapse-linux bin/mmdiff-linux bin/mmseq-linux bin/offsetGTF-linux bin/postdiff-linux bin/t2g_hits-linux
+ rm bin/bam2hits-mac bin/extract_transcripts-mac bin/hitstools-mac bin/mmcollapse-mac bin/mmdiff-mac bin/mmseq-mac bin/offsetGTF-mac bin/postdiff-mac bin/t2g_hits-mac
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DTZTie
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.8a
+ cd src
+ make -j2 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function 'int main(int, char**)':
offsetGTF.cpp:115:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       while(gff_ind < gff_positions[chrom].size()) {
             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable 'curoff' [-Wunused-variable]
       int curoff=offset;
           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       while(gff_ind < gff_positions[prevchrom].size()) {
             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=5; i < tokens.size(); i++) {
                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(i < tokens.size()-1) {
          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable 'gff_pos' [-Wunused-variable]
   int gff_pos= -1;
       ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < transcriptName.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < currentReadTranscripts.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if (VAL > numeric_limits<uint32_t>::max()) { \
          ^
hitsio.cpp:191:2: note: in expansion of macro 'WRITE_UINT'
  WRITE_UINT(ofs, hitsfileSchema);
  ^
hitsio.cpp:193:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < transcriptName.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:3: note: in expansion of macro 'WRITE_UINT'
   WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
   ^
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < currentReadTranscripts.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:9: warning: unused variable 'nextStrLen' [-Wunused-variable]
  size_t nextStrLen;
         ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::__cxx11::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function 'int main(int, char**)':
t2g_hits.cpp:90:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=2; i < tokens.size(); i++) {
                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.8 -DARMA_64BIT_WORD -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz -larmadillo
mmcollapse.cpp: In function 'void get_unidentifiable_transcripts(std::__cxx11::string, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char> >&, std::map<std::__cxx11::basic_string<char>, bool>&)':
mmcollapse.cpp:156:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < tokens.size(); i++) {
                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:211:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:214:26: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
       sd.push_back(math::inf());
                          ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:214:30: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
       sd.push_back(math::inf());
                              ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:215:28: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
       iact.push_back(math::inf());
                            ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:215:32: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
       iact.push_back(math::inf());
                                ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:257:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < tokens.size(); i++) {
                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:317:28: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         sd.push_back(math::inf());
                            ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:317:32: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         sd.push_back(math::inf());
                                ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:318:30: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         iact.push_back(math::inf());
                              ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp:318:34: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         iact.push_back(math::inf());
                                  ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:62:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^~~
mmcollapse.cpp: In function 'void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)':
mmcollapse.cpp:398:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int s=0; s < R.n_slices; s++) {
                ~~^~~~~~~~~~~~
mmcollapse.cpp:399:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < candidates.size(); t++) {
                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:400:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int j=1; j < indexes.size(); j++) {
                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:412:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=1; j < indexes.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:415:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < R.n_cols; i++) {
                    ~~^~~~~~~~~~
mmcollapse.cpp:416:33: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         R(indexes[j],i,s)=math::nan();
                                 ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp:416:37: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         R(indexes[j],i,s)=math::nan();
                                     ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp:417:33: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         R(i,indexes[j],s)=math::nan();
                                 ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp:417:37: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
         R(i,indexes[j],s)=math::nan();
                                     ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp:424:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < indexes.size(); i++) {
                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:429:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=1; i < tset.size(); i++) {
                ~~^~~~~~~~~~~~~
mmcollapse.cpp:435:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=1; i < indexes.size(); i++) {
                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >)':
mmcollapse.cpp:443:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:450:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int c=0; c < candidates.size(); c++) {
                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:454:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < tokens.size(); t++) {
                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:462:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=1; t < indexes.size(); t++) {
                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:467:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=1; t < indexes.size(); t++) {
                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:474:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < toshed.size(); i++) {
                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function 'void mean_corrs(const cube&, const umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)':
mmcollapse.cpp:484:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int v= 0; v < R.n_rows; v++) {
                   ~~^~~~~~~~~~
mmcollapse.cpp:490:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < u.size(); i++) {
                    ~~^~~~~~~~~~
mmcollapse.cpp: In function 'void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char> >&, std::map<std::__cxx11::basic_string<char>, int>&)':
mmcollapse.cpp:517:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int s=0; s < basenames.size(); s++) {
                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:541:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int t=0; t < tokens.size(); t++) {
                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:544:60: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
             if(str=="NA") myM(i,cand2ind[tokens[t]])=math::nan();
                                                            ^~~
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp:544:64: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
             if(str=="NA") myM(i,cand2ind[tokens[t]])=math::nan();
                                                                ^
In file included from /usr/include/armadillo:115:0,
                 from mmcollapse.cpp:28:
/usr/include/armadillo_bits/constants_old.hpp:59:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^~~
mmcollapse.cpp: In function 'int main(int, char**)':
mmcollapse.cpp:628:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=1; i < basenames.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:687:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int s=0; s < basenames.size(); s++) {
                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:703:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:728:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0 ;i < maxcorrs.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:734:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0 ;i < mincorrs.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:798:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0 ;i < maxcorrs.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:804:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0 ;i < mincorrs.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:823:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int s=0; s < basenames.size(); s++) {
                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:848:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int t=0; t < tokens.size(); t++) {
                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:878:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int t=0; t < tokens2.size(); t++) {
                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:930:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < M.n_cols; t++) {
                  ~~^~~~~~~~~~
mmcollapse.cpp:959:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=1; i < tokens2.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:972:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(MM.size1() < i+1 ) factor1=2;
          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:973:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(MM.size2() < j+1 ) factor2=2;
          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1006:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < ids.size(); t++) {
                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1079:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < ids.size(); i++) {
                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1088:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int v = 0; v < M.n_cols; v++) {
                    ~~^~~~~~~~~~
mmcollapse.cpp:836:9: warning: unused variable 'isident' [-Wunused-variable]
     int isident=0;
         ^~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema0()':
hitsio.cpp:163:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < transcriptName.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema0()':
hitsio.cpp:184:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < currentReadTranscripts.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileWriter::writeHeaderSchema1()':
hitsio.cpp:24:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if (VAL > numeric_limits<uint32_t>::max()) { \
          ^
hitsio.cpp:191:2: note: in expansion of macro 'WRITE_UINT'
  WRITE_UINT(ofs, hitsfileSchema);
  ^
hitsio.cpp:193:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < transcriptName.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:3: note: in expansion of macro 'WRITE_UINT'
   WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
   ^
hitsio.cpp: In member function 'void HitsfileWriter::writeReadMapRecordSchema1()':
hitsio.cpp:236:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < currentReadTranscripts.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function 'void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)':
hitsio.cpp:356:9: warning: unused variable 'nextStrLen' [-Wunused-variable]
  size_t nextStrLen;
         ^~~~~~~~~~
hitsio.cpp: In member function 'bool HitsfileReader::readReadMapRecordTranscriptID(std::__cxx11::string&)':
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:37:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:38:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < P.n_rows; j++) {
                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:77:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i < v.n_elem; i++) {
               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:94:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int feature=0; feature < y->n_rows; feature++) {
                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:98:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < M.n_cols; i++) {
                    ~~^~~~~~~~~~
bms.cpp:103:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:133:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int feature=0; feature < y->n_rows; feature++) {
                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:186:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_rows; j++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:254:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:256:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int b=0; b < M.n_cols; b++) {
                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:333:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:335:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int c=0; c < P[model].n_cols; c++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:416:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:505:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:507:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:560:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_rows; j++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:583:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:586:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int c=0; c < P[0].n_cols; c++) {
                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:604:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_cols; j++) {
                  ~~^~~~~~~~~~~
bms.cpp:611:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:632:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_cols; j++) {
                  ~~^~~~~~~~~~~
bms.cpp:639:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp:647:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp:652:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:668:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:670:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < y->n_cols; i++) {
                    ~~^~~~~~~~~~~
bms.cpp:674:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:680:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:682:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < y->n_cols; i++) {
                    ~~^~~~~~~~~~~
bms.cpp:688:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:692:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:697:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:710:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:715:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:722:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:740:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:751:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:762:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < y->n_cols; i++) {
                      ~~^~~~~~~~~~~
bms.cpp:774:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < y->n_cols; i++) {
                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:888:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:942:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < y->n_cols; i++) {
                ~~^~~~~~~~~~~
bms.cpp:951:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < M.n_cols; j++) {
                  ~~^~~~~~~~~~
bms.cpp:958:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:979:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < M.n_cols; l++) {
                  ~~^~~~~~~~~~
bms.cpp:985:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1094:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < M.n_cols; l++) {
                  ~~^~~~~~~~~~
bms.cpp:1097:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1108:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < y->n_rows; i++) {
                ~~^~~~~~~~~~~
bms.cpp:1111:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < M.n_cols; l++) {
                    ~~^~~~~~~~~~
bms.cpp:1114:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::__cxx11::string, gsl_rng**, int, bool)':
bms.cpp:1196:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:1200:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(C(i,model)+1 > _n.size()) {
            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::__cxx11::string)':
bms.cpp:1356:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < M.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:1362:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < M.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:1368:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[0].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1374:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[1].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1380:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[0].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1386:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[1].n_cols; i++) {
                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz -larmadillo
mmseq.cpp: In function 'std::vector<double> meanvar(std::vector<double>, double, double)':
mmseq.cpp:129:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i < v.size(); i++) {
               ~~^~~~~~~~~~
mmseq.cpp: In function 'int main(int, char**)':
mmseq.cpp:243:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < tokens.size(); i++) {
                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:422:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(M.size1() < m ) factor1=2;
          ~~~~~~~~~~^~~
mmseq.cpp:423:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(M.size2() < n ) factor2=2;
          ~~~~~~~~~~^~~
mmseq.cpp:593:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(unsigned t=0; t < n; t++)  {
                     ~~^~~
mmseq.cpp:735:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(unsigned t=0; t < n; t++)
                       ~~^~~
mmseq.cpp:764:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(unsigned t=0; t < n; t++)
                         ~~^~~
mmseq.cpp:773:11: warning: unused variable 'threadid' [-Wunused-variable]
       int threadid=OMP_GET_THREAD_NUM;
           ^~~~~~~~
mmseq.cpp:828:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(unsigned t=0; t < n; t++)
                     ~~^~~
mmseq.cpp:911:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(unsigned t=0; t < n; t++) {
                         ~~^~~
mmseq.cpp:939:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:960:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1097:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
                     ~~^~~
mmseq.cpp:1111:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < percentiles.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1135:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1143:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1148:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i < identical_transcripts.size(); i++) {
               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1155:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1160:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i < gene2transcripts.size(); i++) {
               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1167:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1178:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1188:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < percentiles.size(); j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1207:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < identical_transcripts.size() ; t++) {
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1211:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < gene2transcripts.size(); t++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1225:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1329:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int t=0; t < identical_transcripts.size(); t++) {
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1348:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int g=0; g < gene2transcripts.size(); g++) {
                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1472:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < percentiles.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1474:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(i==percentiles.size()-1) {
        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1481:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < percentiles.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1483:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(i==percentiles.size()-1) {
        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1505:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < percentiles.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1507:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(i==percentiles.size()-1) {
            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1513:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < percentiles.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1515:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(i==percentiles.size()-1) {
            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1535:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < percentiles.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1537:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(i==percentiles.size()-1) {
            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1543:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < percentiles.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1545:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(i==percentiles.size()-1) {
            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1559:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < percentiles.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1561:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(i==percentiles.size()-1) {
        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1581:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < percentiles.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1583:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(i==percentiles.size()-1) {
              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1598:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < percentiles.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1600:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(i==percentiles.size()-1) {
              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1618:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < percentiles.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1620:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(i==percentiles.size()-1) {
        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1643:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < percentiles.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1645:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(i==percentiles.size()-1) {
              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1655:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < percentiles.size(); i++) {
                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1657:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(i==percentiles.size()-1) {
              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:307:8: warning: unused variable 'buf16384' [-Wunused-variable]
   char buf16384[16384];
        ^~~~~~~~
mmseq.cpp:390:8: warning: variable 'doublehit' set but not used [-Wunused-but-set-variable]
   bool doublehit;
        ^~~~~~~~~
bms.cpp: In member function 'arma::Col<int> BMS::m2v(arma::Mat<double>)':
bms.cpp:37:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:38:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < P.n_rows; j++) {
                  ~~^~~~~~~~~~
bms.cpp: In member function 'std::vector<double> BMS::meanvar(arma::Col<double>)':
bms.cpp:77:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i < v.n_elem; i++) {
               ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::print(bool)':
bms.cpp:94:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int feature=0; feature < y->n_rows; feature++) {
                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:98:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < M.n_cols; i++) {
                    ~~^~~~~~~~~~
bms.cpp:103:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::printtune(int)':
bms.cpp:133:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int feature=0; feature < y->n_rows; feature++) {
                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_alpha()':
bms.cpp:186:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_rows; j++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_beta()':
bms.cpp:254:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:256:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int b=0; b < M.n_cols; b++) {
                    ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_eta()':
bms.cpp:333:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:335:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int c=0; c < P[model].n_cols; c++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_sigmasq()':
bms.cpp:416:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_lambda()':
bms.cpp:505:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:507:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::set_pseudoprior_rho()':
bms.cpp:560:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_rows; j++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::copy_pseudo()':
bms.cpp:583:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < y->n_rows; j++) {
                ~~^~~~~~~~~~~
bms.cpp:586:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int c=0; c < P[0].n_cols; c++) {
                  ~~^~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_alpha(int, int, bool)':
bms.cpp:604:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_cols; j++) {
                  ~~^~~~~~~~~~~
bms.cpp:611:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_beta(int, int, bool)':
bms.cpp:632:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y->n_cols; j++) {
                  ~~^~~~~~~~~~~
bms.cpp:639:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp:647:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp:652:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < M.n_cols; i++) {
                  ~~^~~~~~~~~~
bms.cpp: In member function 'void BMS::update_eta(int, int, bool)':
bms.cpp:668:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:670:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < y->n_cols; i++) {
                    ~~^~~~~~~~~~~
bms.cpp:674:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:680:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:682:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < y->n_cols; i++) {
                    ~~^~~~~~~~~~~
bms.cpp:688:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:692:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:697:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_lambda(int, int, bool)':
bms.cpp:710:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:715:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:722:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq(int, int, bool, bool)':
bms.cpp:740:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:751:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:762:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < y->n_cols; i++) {
                      ~~^~~~~~~~~~~
bms.cpp:774:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < y->n_cols; i++) {
                      ~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::update_sigmasq_RW(int, int, bool, bool)':
bms.cpp:888:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_posterior(int, int)':
bms.cpp:942:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < y->n_cols; i++) {
                ~~^~~~~~~~~~~
bms.cpp:951:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < M.n_cols; j++) {
                  ~~^~~~~~~~~~
bms.cpp:958:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'double BMS::log_target_pseudo(int, int)':
bms.cpp:979:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < M.n_cols; l++) {
                  ~~^~~~~~~~~~
bms.cpp:985:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function 'void BMS::print_pseudo()':
bms.cpp:1094:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < M.n_cols; l++) {
                  ~~^~~~~~~~~~
bms.cpp:1097:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int l=0; l < P[model].n_cols; l++) {
                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1108:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < y->n_rows; i++) {
                ~~^~~~~~~~~~~
bms.cpp:1111:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < M.n_cols; l++) {
                    ~~^~~~~~~~~~
bms.cpp:1114:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < P[model].n_cols; l++) {
                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor 'BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::__cxx11::string, gsl_rng**, int, bool)':
bms.cpp:1196:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y->n_cols; i++) {
                  ~~^~~~~~~~~~~
bms.cpp:1200:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(C(i,model)+1 > _n.size()) {
            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function 'void BMS::initialise_streams(std::__cxx11::string)':
bms.cpp:1356:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < M.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:1362:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < M.n_cols; i++) {
                ~~^~~~~~~~~~
bms.cpp:1368:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[0].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1374:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[1].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1380:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[0].n_cols; i++) {
                ~~^~~~~~~~~~~~~
bms.cpp:1386:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < P[1].n_cols; i++) {
                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz -larmadillo
bam2hits.cpp: In function 'void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)':
bam2hits.cpp:109:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < sortedfastas.size()-1; i++) {
                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int j=0; j < curSet.size()-1; j++) {
                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < curSet.size()-1; j++) {
                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function 'std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)':
bam2hits.cpp:218:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j < alns.size(); j++) {
                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(i < torem.size() && j==torem[i]) {
        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function 'int main(int, char**)':
bam2hits.cpp:518:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(_B != tg[0].size()-2) {
            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(_A == tg[0].size()-2) {
              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if(_A != tg[1].size()-2) {
                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=1; i < tokens2.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:608:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < fastas.size(); i++) {
                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:643:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:657:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < fastas.size(); i++) {
                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:660:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int j =0; j < fastas[i].seq().size(); j++) {
                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:661:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:790:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:669:11: warning: unused variable 'binpath' [-Wunused-variable]
     char *binpath = strdup(argv[0]);
           ^~~~~~~
bam2hits.cpp:918:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:946:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < testIsizes.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:957:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < heights.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:995:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int fl=1; fl <= (it->seq()).size(); fl++) {
                     ~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function 'int main(int, char**)':
extract_transcripts.cpp:121:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < tokens2.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:168:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < tokens.size(); i++) {
                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:194:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < it->starts()->size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:202:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       while(faline < stitch.size()) {
             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable 'line' [-Wunused-variable]
   int line=0;
       ^~~~
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz -larmadillo
hitstools.cpp: In function 'void convert(char*, std::__cxx11::string)':
hitstools.cpp:50:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i = 0; i < transcriptName.size(); i++) {
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function 'int main(int, char**)':
hitstools.cpp:95:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i = 0; i < transcriptName.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:135:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i = 0; i < transcriptName.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~~~~
/tmp/ccwQCOxY.o: In function `main':
/builddir/build/BUILD/mmseq-1.0.8a/src/bam2hits.cpp:651: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
g++ -DVERSION=1.0.8 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz -larmadillo
mmdiff.cpp: In function 'void parse_mmseq(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)':
mmdiff.cpp:99:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < filenames.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:110:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < tokens.size(); j++) {
                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:137:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(k + 1 > features.size()) {
          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:146:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(k+1 > y.n_rows) {
          ~~~~^~~~~~~~~~
mmdiff.cpp:151:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:172:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:93:46: warning: variable 'mcse_ind' set but not used [-Wunused-but-set-variable]
   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
                                              ^~~~~~~~
mmdiff.cpp:93:59: warning: variable 'iact_ind' set but not used [-Wunused-but-set-variable]
   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
                                                           ^~~~~~~~
mmdiff.cpp: In function 'void apply_normalisation(std::vector<std::__cxx11::basic_string<char> >, arma::Mat<double>&, arma::Mat<double>&, double)':
mmdiff.cpp:211:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < uh.n_rows; i++) {
                ~~^~~~~~~~~~~
mmdiff.cpp:213:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < uh.n_cols; j++) {
                  ~~^~~~~~~~~~~
mmdiff.cpp:229:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < use.size(); i++) {
                ~~^~~~~~~~~~~~
mmdiff.cpp:231:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y.n_cols; j++) {
                  ~~^~~~~~~~~~
mmdiff.cpp:238:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int sample=0; sample < y.n_cols; sample++) {
                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:240:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < use.size(); i++) {
                  ~~^~~~~~~~~~~~
mmdiff.cpp:245:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < y.n_rows; i++) {
                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)':
mmdiff.cpp:256:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
                ~^~~~~~~~~~
mmdiff.cpp:257:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < y.n_rows; i++) {
                ~~^~~~~~~~~~
mmdiff.cpp:259:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0; j < y.n_cols; j++) {
                  ~~^~~~~~~~~~
mmdiff.cpp: In function 'void parse_matrices(std::__cxx11::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)':
mmdiff.cpp:309:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int t=0; t < tokens.size(); t++) {
                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function 'int main(int, char**)':
mmdiff.cpp:419:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < arguments.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:430:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i=0; i < arguments.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:438:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       while(ss < arguments.size()) {
             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:450:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(ss != arguments.size()) {
          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:577:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0; i < arguments.size(); i++) {
                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:639:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i < simple_de.size(); i++) {
                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:758:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:763:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int feature=0; feature < features.size(); feature++) {
                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:836:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:885:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int l=0; l < M.n_cols; l++) {
                    ~~^~~~~~~~~~
mmdiff.cpp:897:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int f=0; f < samplenames.size(); f++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:901:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       found2 = found2==string::npos ? -1 : found2;
                ~~~~~~^~~~~~~~
mmdiff.cpp:906:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int f=0; f < samplenames.size(); f++) {
                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:908:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(f < samplenames.size()-1) cout << "\t";
        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:913:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int feature=0; feature < features.size(); feature++) {
                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:924:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int l=0; l < M.n_cols; l++) {
                      ~~^~~~~~~~~~
mmdiff.cpp:934:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int f=0; f < samplenames.size(); f++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:937:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int f=0; f < samplenames.size(); f++) {
                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(f < samplenames.size()-1) cout << "\t";
          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:949:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int feature=0; feature < features.size(); feature++) {
                          ~~~~~~~~^~~~~~~~~~~~~~~~~
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.LZMDGI
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
+ cd mmseq-1.0.8a
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m --build-id-seed 1.0.8a-19.fc27 --unique-debug-suffix -1.0.8a-19.fc27.x86_64 --unique-debug-src-base mmseq-1.0.8a-19.fc27.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/mmseq-1.0.8a
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/t2g_hits
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/offsetGTF
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/mmseq
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/mmdiff
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/mmcollapse
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/hitstools
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/extract_transcripts
extracting debug info from /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/bin/bam2hits
/usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
525 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
Processing files: mmseq-1.0.8a-19.fc27.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.AwQQ1h
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.8a
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/share/doc/mmseq
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/share/doc/mmseq
+ cp -pr README.md /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/share/doc/mmseq
+ cp -pr COPYING /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/share/doc/mmseq
+ cp -pr doc/ /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64/usr/share/doc/mmseq
+ exit 0
Provides: mmseq = 1.0.8a-19.fc27 mmseq(x86-64) = 1.0.8a-19.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/bash /bin/sh /usr/bin/env libarmadillo.so.7()(64bit) libbam.so.1()(64bit) libblas.so.3()(64bit) libboost_iostreams.so.1.63.0()(64bit) libboost_regex.so.1.63.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgfortran.so.4()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) liblapack.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debuginfo-1.0.8a-19.fc27.x86_64
Provides: debuginfo(build-id) = 189cb302de304188767065cab34708355c781ae3 debuginfo(build-id) = 1e5b5ab3cec7b94ecc45c2ffbd64f94259ad40cf debuginfo(build-id) = 1fdd48d7cb3bf9c49adf7bfecc8f61242dc28c5d debuginfo(build-id) = 477a649a7c0a4adf736955ddee0b61880337c47b debuginfo(build-id) = 57cfdbf5b15f888f3354e0e12e542d73a1ce92a0 debuginfo(build-id) = 58269aab4c1f21c082ce73122f6522cdfc50e0ff debuginfo(build-id) = 6c9d92cbfe914e1cd6461f33e76be74f9343b289 debuginfo(build-id) = bf7db80aa4eb225ad1bd632c7451f5831049ecc1 mmseq-debuginfo = 1.0.8a-19.fc27 mmseq-debuginfo(x86-64) = 1.0.8a-19.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
Wrote: /builddir/build/RPMS/mmseq-1.0.8a-19.fc27.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.8a-19.fc27.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.sDlVwV
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.8a
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.8a-19.fc27.x86_64
+ exit 0
Finish: rpmbuild mmseq-1.0.8a-19.fc27.src.rpm
Finish: build phase for mmseq-1.0.8a-19.fc27.src.rpm
INFO: Done(intermediate-srpm/mmseq-1.0.8a-19.fc27.src.rpm) Config(child) 1 minutes 48 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run