Mock Version: 1.4.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-randomForest.spec'], chrootPath='/var/lib/mock/678618-epel-7-x86_64-1511420040.504154/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f74be3171d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-randomForest.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
warning: Could not canonicalize hostname: copr-builder-464414140.novalocal
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/R-randomForest-4.6.12-1.el7.centos.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-randomForest.spec'], chrootPath='/var/lib/mock/678618-epel-7-x86_64-1511420040.504154/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f74be3171d0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-randomForest.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.e7OuMO
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf randomForest
+ /usr/bin/mkdir -p randomForest
+ cd randomForest
+ /usr/bin/gzip -dc /builddir/build/SOURCES/randomForest_4.6-12.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.kBKwBR
+ umask 022
+ cd /builddir/build/BUILD
+ cd randomForest
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yOl7qU
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64
+ cd randomForest
+ mkdir -p /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64/usr/lib64/R/library randomForest
* installing *source* package 'randomForest' ...
** package 'randomForest' successfully unpacked and MD5 sums checked
** libs
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c classTree.c -o classTree.o
In file included from /usr/include/R/R.h:91:0,
                 from classTree.c:15:
classTree.c: In function 'predictClassTree':
/usr/include/R/R_ext/RS.h:74:35: warning: 'cbestsplit' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                   ^
classTree.c:422:22: note: 'cbestsplit' was declared here
     int m, i, j, k, *cbestsplit;
                      ^
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c regTree.c -o regTree.o
In file included from /usr/include/R/R.h:91:0,
                 from regTree.c:25:
regTree.c: In function 'predictRegTree':
/usr/include/R/R_ext/RS.h:74:35: warning: 'cbestsplit' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                   ^
regTree.c:313:22: note: 'cbestsplit' was declared here
     int i, j, k, m, *cbestsplit;
                      ^
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c regrf.c -o regrf.o
regrf.c: In function 'regRF':
regrf.c:52:25: warning: variable 'averrb' set but not used [-Wunused-but-set-variable]
     double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
                         ^
regrf.c:61:30: warning: 'nodexts' may be used uninitialized in this function [-Wmaybe-uninitialized]
     int *in, *nind, *nodex, *nodexts;
                              ^
regrf.c:220:45: warning: 'ytree' may be used uninitialized in this function [-Wmaybe-uninitialized]
     yTestPred[n] = (j * yTestPred[n] + ytree[n]) / (j + 1);
                                             ^
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c rf.c -o rf.o
rf.c: In function 'classRF':
rf.c:103:10: warning: variable 'tp' set but not used [-Wunused-but-set-variable]
         *tp, *wr;
          ^
rf.c:88:15: warning: variable 'nimp' set but not used [-Wunused-but-set-variable]
         mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
               ^
rf.c:88:9: warning: variable 'mimp' set but not used [-Wunused-but-set-variable]
         mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
         ^
rf.c:354:16: warning: 'nclts' may be used uninitialized in this function [-Wmaybe-uninitialized]
    TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1,
                ^
rf.c:270:25: warning: 'strata_size' may be used uninitialized in this function [-Wmaybe-uninitialized]
       last = strata_size[n] - 1;
                         ^
rf.c:273:22: warning: 'strata_idx' may be used uninitialized in this function [-Wmaybe-uninitialized]
        k = strata_idx[n][ktmp];
                      ^
rf.c:269:6: warning: 'nstrata' may be used uninitialized in this function [-Wmaybe-uninitialized]
      for (n = 0; n < nstrata; ++n) {
      ^
rf.c:97:36: warning: 'oobpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
  *at, *a, *b, *mind, *nind, *jts, *oobpair;
                                    ^
gfortran -m64   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules  -c rfsub.f -o rfsub.o
Warning: Nonexistent include directory "/usr/lib64/gfortran/modules"
rfsub.f:179.22:
               end if                                                   
                      1
Warning: Nonconforming tab character at (1)
rfsub.f:97.35:
               bestsplit(kbuild) = dble(a(msplit,int(best)))            
                                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
rfsub.f:98.39:
               bestsplitnext(kbuild) = dble(a(msplit,int(best)+1))      
                                       1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
rfsub.f:100.35:
               bestsplit(kbuild) = best                                 
                                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
rfsub.f:101.39:
               bestsplitnext(kbuild) = 0.0                              
                                       1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1)
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c rfutils.c -o rfutils.o
gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o randomForest.so classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64/usr/lib64/R/library/randomForest/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'randomForest'
    finding HTML links ... done
    MDSplot                                 html  
    classCenter                             html  
    combine                                 html  
    getTree                                 html  
    grow                                    html  
    importance                              html  
    imports85                               html  
    margin                                  html  
    na.roughfix                             html  
    outlier                                 html  
    partialPlot                             html  
    plot.randomForest                       html  
    predict.randomForest                    html  
    randomForest                            html  
    rfImpute                                html  
    rfNews                                  html  
    rfcv                                    html  
    treesize                                html  
    tuneRF                                  html  
    varImpPlot                              html  
    varUsed                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (randomForest)
+ test -d randomForest/src
+ cd randomForest/src
+ rm -f classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o randomForest.so
+ rm -f /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/randomForest
extracting debug info from /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64/usr/lib64/R/library/randomForest/libs/randomForest.so
dwz: Too few files for multifile optimization
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
191 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qQeI77
+ umask 022
+ cd /builddir/build/BUILD
+ cd randomForest
+ /usr/bin/R CMD check randomForest
* using log directory '/builddir/build/BUILD/randomForest/randomForest.Rcheck'
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'randomForest/DESCRIPTION' ... OK
* this is package 'randomForest' version '4.6-12'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.5/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.5/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.5/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.5/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.5/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.5/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'randomForest' can be installed ... WARNING
Found the following significant warnings:
  Warning: Nonexistent include directory "/usr/lib64/gfortran/modules"
  Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
  Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1)
See '/builddir/build/BUILD/randomForest/randomForest.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Calls with DUP:
   .C("regForest", as.double(x), ypred = double(ntest), as.integer(mdim), 
       as.integer(ntest), as.integer(ntree), object$forest$leftDaughter, 
       object$forest$rightDaughter, object$forest$nodestatus, nrnodes, 
       object$forest$xbestsplit, object$forest$nodepred, object$forest$bestvar, 
       object$forest$ndbigtree, object$forest$ncat, as.integer(maxcat), 
       as.integer(predict.all), treepred = as.double(treepred), 
       as.integer(proximity), proximity = as.double(proxmatrix), 
       nodes = as.integer(nodes), nodexts = as.integer(nodexts), 
       DUP = FALSE, PACKAGE = "randomForest")
   .C("classForest", mdim = as.integer(mdim), ntest = as.integer(ntest), 
       nclass = as.integer(object$forest$nclass), maxcat = as.integer(maxcat), 
       nrnodes = as.integer(nrnodes), jbt = as.integer(ntree), xts = as.double(x), 
       xbestsplit = as.double(object$forest$xbestsplit), pid = object$forest$pid, 
       cutoff = as.double(cutoff), countts = as.double(countts), 
       treemap = as.integer(aperm(object$forest$treemap, c(2, 1, 
           3))), nodestatus = as.integer(object$forest$nodestatus), 
       cat = as.integer(object$forest$ncat), nodepred = as.integer(object$forest$nodepred), 
       treepred = as.integer(treepred), jet = as.integer(numeric(ntest)), 
       bestvar = as.integer(object$forest$bestvar), nodexts = as.integer(nodexts), 
       ndbigtree = as.integer(object$forest$ndbigtree), predict.all = as.integer(predict.all), 
       prox = as.integer(proximity), proxmatrix = as.double(proxmatrix), 
       nodes = as.integer(nodes), DUP = FALSE, PACKAGE = "randomForest")
   .C("classRF", x = x, xdim = as.integer(c(p, n)), y = as.integer(y), 
       nclass = as.integer(nclass), ncat = as.integer(ncat), maxcat = as.integer(maxcat), 
       sampsize = as.integer(sampsize), strata = if (Stratify) as.integer(strata) else integer(1), 
       Options = as.integer(c(addclass, importance, localImp, proximity, 
           oob.prox, do.trace, keep.forest, replace, Stratify, keep.inbag)), 
       ntree = as.integer(ntree), mtry = as.integer(mtry), ipi = as.integer(ipi), 
       classwt = as.double(cwt), cutoff = as.double(threshold), 
       nodesize = as.integer(nodesize), outcl = integer(nsample), 
       counttr = integer(nclass * nsample), prox = prox, impout = impout, 
       impSD = impSD, impmat = impmat, nrnodes = as.integer(nrnodes), 
       ndbigtree = integer(ntree), nodestatus = integer(nt * nrnodes), 
       bestvar = integer(nt * nrnodes), treemap = integer(nt * 2 * 
           nrnodes), nodepred = integer(nt * nrnodes), xbestsplit = double(nt * 
           nrnodes), errtr = double((nclass + 1) * ntree), testdat = as.integer(testdat), 
       xts = as.double(xtest), clts = as.integer(ytest), nts = as.integer(ntest), 
       countts = double(nclass * ntest), outclts = as.integer(numeric(ntest)), 
       labelts = as.integer(labelts), proxts = proxts, errts = error.test, 
       inbag = if (keep.inbag) matrix(integer(n * ntree), n) else integer(n), 
       DUP = FALSE, PACKAGE = "randomForest")
   .C("regRF", x, as.double(y), as.integer(c(n, p)), as.integer(sampsize), 
       as.integer(nodesize), as.integer(nrnodes), as.integer(ntree), 
       as.integer(mtry), as.integer(c(importance, localImp, nPerm)), 
       as.integer(ncat), as.integer(maxcat), as.integer(do.trace), 
       as.integer(proximity), as.integer(oob.prox), as.integer(corr.bias), 
       ypred = double(n), impout = impout, impmat = impmat, impSD = impSD, 
       prox = prox, ndbigtree = integer(ntree), nodestatus = matrix(integer(nrnodes * 
           nt), ncol = nt), leftDaughter = matrix(integer(nrnodes * 
           nt), ncol = nt), rightDaughter = matrix(integer(nrnodes * 
           nt), ncol = nt), nodepred = matrix(double(nrnodes * nt), 
           ncol = nt), bestvar = matrix(integer(nrnodes * nt), ncol = nt), 
       xbestsplit = matrix(double(nrnodes * nt), ncol = nt), mse = double(ntree), 
       keep = as.integer(c(keep.forest, keep.inbag)), replace = as.integer(replace), 
       testdat = as.integer(testdat), xts = xtest, ntest = as.integer(ntest), 
       yts = as.double(ytest), labelts = as.integer(labelts), ytestpred = double(ntest), 
       proxts = proxts, msets = double(if (labelts) ntree else 1), 
       coef = double(2), oob.times = integer(n), inbag = if (keep.inbag) matrix(integer(n * 
           ntree), n) else integer(1), DUP = FALSE, PACKAGE = "randomForest")
DUP is no longer supported and will be ignored.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
  '/builddir/build/BUILD/randomForest/randomForest.Rcheck/00check.log'
for details.
+ exit 0
Processing files: R-randomForest-4.6.12-1.el7.centos.x86_64
Provides: R-randomForest = 4.6.12-1.el7.centos R-randomForest(x86-64) = 4.6.12-1.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgfortran.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libquadmath.so.0()(64bit) rtld(GNU_HASH)
Processing files: R-randomForest-debuginfo-4.6.12-1.el7.centos.x86_64
Provides: R-randomForest-debuginfo = 4.6.12-1.el7.centos R-randomForest-debuginfo(x86-64) = 4.6.12-1.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64
Wrote: /builddir/build/RPMS/R-randomForest-4.6.12-1.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/R-randomForest-debuginfo-4.6.12-1.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.s06GQY
+ umask 022
+ cd /builddir/build/BUILD
+ cd randomForest
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-randomForest-4.6.12-1.el7.centos.x86_64
+ exit 0
Child return code was: 0