Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10b' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4368276 --chroot epel-8-x86_64 --detached
Version: 0.57
PID: 5551
Logging PID: 5552
Task:
{'appstream': True,
 'background': False,
 'bootstrap': 'off',
 'build_id': 4368276,
 'buildroot_pkgs': [],
 'chroot': 'epel-8-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'f883c87ef02a6086737a909385e8cc33ff4eaa24',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el8-collection/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.15.1-3.el8',
 'project_dirname': 'el8-collection',
 'project_name': 'el8-collection',
 'project_owner': 'aminasyan',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/aminasyan/el8-collection/epel-8-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://copr-be.cloud.fedoraproject.org/results/aminasyan/el8-collection/epel-8-x86_64/',
            'id': 'https_copr_be_cloud_fedoraproject_org_results_aminasyan_el8_collection_chroot',
            'name': 'Additional repo https_copr_be_cloud_fedoraproject_org_results_aminasyan_el8_collection_chroot'}],
 'sandbox': 'aminasyan/el8-collection--aminasyan',
 'source_json': {},
 'source_type': None,
 'submitter': 'aminasyan',
 'tags': [],
 'task_id': '4368276-epel-8-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el8-collection/samtools /var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools --depth 500 --no-single-branch

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el8-collection/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools', '--depth', '500', '--no-single-branch']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools'...

Running: git checkout f883c87ef02a6086737a909385e8cc33ff4eaa24

cmd: ['git', 'checkout', 'f883c87ef02a6086737a909385e8cc33ff4eaa24']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools
rc: 0
stdout: 
stderr: Note: switching to 'f883c87ef02a6086737a909385e8cc33ff4eaa24'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at f883c87 automatic import of samtools

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncatedstderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.15.1.tar.bz2
INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/aminasyan/el8-collection/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7648k  100 7648k    0     0  48.9M      0 --:--:-- --:--:-- --:--:-- 49.1M
INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2


Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1651772144.097929 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.0 starting (python version = 3.10.2, NVR = mock-3.0-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools/samtools.spec)  Config(rhel+epel-8-x86_64)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.0
INFO: Mock Version: 3.0
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 6.6 MB/s | 948 kB     00:00    
Additional repo https_copr_be_cloud_fedoraproje 5.7 MB/s | 948 kB     00:00    
Red Hat Enterprise Linux - BaseOS                36 MB/s |  46 MB     00:01    
Red Hat Enterprise Linux - AppStream             28 MB/s |  40 MB     00:01    
Red Hat Enterprise Linux - CodeReady Linux Buil  13 MB/s | 6.5 MB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64  7.2 MB/s |  11 MB     00:01    
Dependencies resolved.
==============================================================================================
 Package                       Arch    Version                           Repository       Size
==============================================================================================
Installing:
 bash                          x86_64  4.4.20-2.el8                      rhel-baseos     1.5 M
 bzip2                         x86_64  1.0.6-26.el8                      rhel-baseos      60 k
 coreutils                     x86_64  8.30-12.el8                       rhel-baseos     1.2 M
 cpio                          x86_64  2.13-8.el8                        copr_base       288 k
 diffutils                     x86_64  3.6-6.el8                         rhel-baseos     359 k
 epel-rpm-macros               noarch  8-28                              epel             22 k
 findutils                     x86_64  1:4.6.0-20.el8                    rhel-baseos     528 k
 gawk                          x86_64  4.2.1-2.el8                       rhel-baseos     1.1 M
 gcc                           x86_64  8.5.0-4.el8_5                     rhel-appstream   23 M
 gcc-c++                       x86_64  8.5.0-4.el8_5                     rhel-appstream   12 M
 grep                          x86_64  3.1-6.el8                         rhel-baseos     274 k
 gzip                          x86_64  1.9-13.el8_5                      rhel-baseos     167 k
 info                          x86_64  6.5-6.el8                         rhel-baseos     198 k
 make                          x86_64  1:4.2.1-10.el8                    rhel-baseos     498 k
 patch                         x86_64  2.7.6-11.el8                      rhel-baseos     138 k
 redhat-release                x86_64  8.5-0.8.el8                       rhel-baseos      44 k
 redhat-rpm-config             noarch  125-1.el8                         rhel-appstream   87 k
 rpm-build                     x86_64  4.14.3-19.el8_5.2                 rhel-appstream  174 k
 sed                           x86_64  4.5-2.el8                         rhel-baseos     298 k
 shadow-utils                  x86_64  2:4.6-14.el8                      rhel-baseos     1.2 M
 tar                           x86_64  2:1.30-5.el8                      rhel-baseos     838 k
 unzip                         x86_64  6.0-45.el8_4                      rhel-baseos     195 k
 util-linux                    x86_64  2.32.1-28.el8                     rhel-baseos     2.5 M
 which                         x86_64  2.21-16.el8                       rhel-baseos      49 k
 xz                            x86_64  5.2.4-3.el8                       rhel-baseos     153 k
Installing dependencies:
 annobin                       x86_64  9.72-1.el8_5.2                    rhel-appstream  111 k
 audit-libs                    x86_64  3.0-0.17.20191104git1c2f876.el8   rhel-baseos     116 k
 basesystem                    noarch  11-5.el8                          rhel-baseos      11 k
 binutils                      x86_64  2.30-108.el8_5.1                  rhel-baseos     5.8 M
 brotli                        x86_64  1.0.6-3.el8                       rhel-baseos     323 k
 bzip2-libs                    x86_64  1.0.6-26.el8                      rhel-baseos      48 k
 ca-certificates               noarch  2021.2.50-80.0.el8_4              rhel-baseos     390 k
 chkconfig                     x86_64  1.19.1-1.el8                      rhel-baseos     198 k
 coreutils-common              x86_64  8.30-12.el8                       rhel-baseos     2.0 M
 cpp                           x86_64  8.5.0-4.el8_5                     rhel-appstream   10 M
 cracklib                      x86_64  2.9.6-15.el8                      rhel-baseos      93 k
 cracklib-dicts                x86_64  2.9.6-15.el8                      rhel-baseos     4.0 M
 crypto-policies               noarch  20210617-1.gitc776d3e.el8         rhel-baseos      63 k
 curl                          x86_64  7.61.1-22.el8                     rhel-baseos     351 k
 cyrus-sasl-lib                x86_64  2.1.27-6.el8_5                    rhel-baseos     123 k
 dwz                           x86_64  0.12-10.el8                       rhel-appstream  109 k
 efi-srpm-macros               noarch  3-3.el8                           rhel-appstream   22 k
 elfutils                      x86_64  0.185-1.el8                       rhel-baseos     540 k
 elfutils-default-yama-scope   noarch  0.185-1.el8                       rhel-baseos      49 k
 elfutils-libelf               x86_64  0.185-1.el8                       rhel-baseos     221 k
 elfutils-libs                 x86_64  0.185-1.el8                       rhel-baseos     292 k
 expat                         x86_64  2.2.5-4.el8_5.3                   rhel-baseos     113 k
 file                          x86_64  5.33-20.el8                       rhel-baseos      77 k
 file-libs                     x86_64  5.33-20.el8                       rhel-baseos     543 k
 filesystem                    x86_64  3.8-6.el8                         rhel-baseos     1.1 M
 fpc-srpm-macros               noarch  1.3-1.el8                         epel            8.2 k
 gc                            x86_64  7.6.4-3.el8                       rhel-appstream  109 k
 gdb-headless                  x86_64  8.2-16.el8                        rhel-appstream  3.7 M
 gdbm                          x86_64  1:1.18-1.el8                      rhel-baseos     130 k
 gdbm-libs                     x86_64  1:1.18-1.el8                      rhel-baseos      60 k
 ghc-srpm-macros               noarch  1.4.2-7.el8                       rhel-appstream  9.4 k
 glib2                         x86_64  2.56.4-156.el8                    rhel-baseos     2.5 M
 glibc                         x86_64  2.28-164.el8_5.3                  rhel-baseos     3.6 M
 glibc-all-langpacks           x86_64  2.28-164.el8_5.3                  rhel-baseos      25 M
 glibc-common                  x86_64  2.28-164.el8_5.3                  rhel-baseos     1.3 M
 glibc-devel                   x86_64  2.28-164.el8_5.3                  rhel-baseos     1.0 M
 glibc-headers                 x86_64  2.28-164.el8_5.3                  rhel-baseos     480 k
 gmp                           x86_64  1:6.1.2-10.el8                    rhel-baseos     321 k
 gnupg2                        x86_64  2.2.20-2.el8                      rhel-baseos     2.4 M
 gnutls                        x86_64  3.6.16-4.el8                      rhel-baseos     1.0 M
 go-srpm-macros                noarch  2-17.el8                          rhel-appstream   13 k
 guile                         x86_64  5:2.0.14-7.el8                    rhel-appstream  3.5 M
 ima-evm-utils                 x86_64  1.3.2-12.el8                      rhel-baseos      64 k
 isl                           x86_64  0.16.1-6.el8                      rhel-appstream  841 k
 kernel-headers                x86_64  4.18.0-348.23.1.el8_5             rhel-baseos     8.3 M
 keyutils-libs                 x86_64  1.5.10-9.el8                      rhel-baseos      34 k
 krb5-libs                     x86_64  1.18.2-14.el8                     rhel-baseos     840 k
 libacl                        x86_64  2.2.53-1.el8                      rhel-baseos      35 k
 libarchive                    x86_64  3.3.3-3.el8_5                     rhel-baseos     360 k
 libassuan                     x86_64  2.5.1-3.el8                       rhel-baseos      83 k
 libatomic_ops                 x86_64  7.6.2-3.el8                       rhel-appstream   38 k
 libattr                       x86_64  2.4.48-3.el8                      rhel-baseos      27 k
 libbabeltrace                 x86_64  1.5.4-3.el8                       rhel-baseos     200 k
 libblkid                      x86_64  2.32.1-28.el8                     rhel-baseos     217 k
 libcap                        x86_64  2.26-5.el8                        rhel-baseos      60 k
 libcap-ng                     x86_64  0.7.11-1.el8                      rhel-baseos      33 k
 libcom_err                    x86_64  1.45.6-2.el8                      rhel-baseos      49 k
 libcurl                       x86_64  7.61.1-22.el8                     rhel-baseos     301 k
 libdb                         x86_64  5.3.28-42.el8_4                   rhel-baseos     751 k
 libdb-utils                   x86_64  5.3.28-42.el8_4                   rhel-baseos     150 k
 libfdisk                      x86_64  2.32.1-28.el8                     rhel-baseos     251 k
 libffi                        x86_64  3.1-22.el8                        rhel-baseos      37 k
 libgcc                        x86_64  8.5.0-4.el8_5                     rhel-baseos      80 k
 libgcrypt                     x86_64  1.8.5-6.el8                       rhel-baseos     463 k
 libgomp                       x86_64  8.5.0-4.el8_5                     rhel-baseos     206 k
 libgpg-error                  x86_64  1.31-1.el8                        rhel-baseos     242 k
 libidn2                       x86_64  2.2.0-1.el8                       rhel-baseos      94 k
 libipt                        x86_64  1.6.1-8.el8                       rhel-appstream   50 k
 libksba                       x86_64  1.3.5-7.el8                       rhel-baseos     135 k
 libmount                      x86_64  2.32.1-28.el8                     rhel-baseos     234 k
 libmpc                        x86_64  1.1.0-9.1.el8                     rhel-appstream   61 k
 libnghttp2                    x86_64  1.33.0-3.el8_2.1                  rhel-baseos      77 k
 libnsl2                       x86_64  1.2.0-2.20180605git4a062cf.el8    rhel-baseos      58 k
 libpkgconf                    x86_64  1.4.2-1.el8                       rhel-baseos      35 k
 libpsl                        x86_64  0.20.2-6.el8                      rhel-baseos      61 k
 libpwquality                  x86_64  1.4.4-3.el8                       rhel-baseos     107 k
 libselinux                    x86_64  2.9-5.el8                         rhel-baseos     165 k
 libsemanage                   x86_64  2.9-6.el8                         rhel-baseos     165 k
 libsepol                      x86_64  2.9-3.el8                         rhel-baseos     340 k
 libsigsegv                    x86_64  2.11-5.el8                        rhel-baseos      30 k
 libsmartcols                  x86_64  2.32.1-28.el8                     rhel-baseos     177 k
 libssh                        x86_64  0.9.4-3.el8                       rhel-baseos     215 k
 libssh-config                 noarch  0.9.4-3.el8                       rhel-baseos      19 k
 libstdc++                     x86_64  8.5.0-4.el8_5                     rhel-baseos     453 k
 libstdc++-devel               x86_64  8.5.0-4.el8_5                     rhel-appstream  2.0 M
 libtasn1                      x86_64  4.13-3.el8                        rhel-baseos      76 k
 libtirpc                      x86_64  1.1.4-5.el8                       rhel-baseos     112 k
 libtool-ltdl                  x86_64  2.4.6-25.el8                      rhel-baseos      58 k
 libunistring                  x86_64  0.9.9-3.el8                       rhel-baseos     422 k
 libusbx                       x86_64  1.0.23-4.el8                      rhel-baseos      74 k
 libutempter                   x86_64  1.1.6-14.el8                      rhel-baseos      32 k
 libuuid                       x86_64  2.32.1-28.el8                     rhel-baseos      96 k
 libverto                      x86_64  0.3.0-5.el8                       rhel-baseos      24 k
 libxcrypt                     x86_64  4.1.1-6.el8                       rhel-baseos      73 k
 libxcrypt-devel               x86_64  4.1.1-6.el8                       rhel-baseos      25 k
 libxml2                       x86_64  2.9.7-12.el8_5                    rhel-baseos     696 k
 libzstd                       x86_64  1.4.4-1.el8                       rhel-baseos     266 k
 lua-libs                      x86_64  5.3.4-12.el8                      rhel-baseos     118 k
 lua-srpm-macros               noarch  1-3.el8                           epel            8.1 k
 lz4-libs                      x86_64  1.8.3-3.el8_4                     rhel-baseos      66 k
 mpfr                          x86_64  3.1.6-1.el8                       rhel-baseos     221 k
 ncurses                       x86_64  6.1-9.20180224.el8                rhel-baseos     387 k
 ncurses-base                  noarch  6.1-9.20180224.el8                rhel-baseos      81 k
 ncurses-libs                  x86_64  6.1-9.20180224.el8                rhel-baseos     334 k
 nettle                        x86_64  3.4.1-7.el8                       rhel-baseos     301 k
 npth                          x86_64  1.5-4.el8                         rhel-baseos      26 k
 ocaml-srpm-macros             noarch  5-4.el8                           rhel-appstream  9.5 k
 openblas-srpm-macros          noarch  2-2.el8                           rhel-appstream  8.0 k
 openldap                      x86_64  2.4.46-18.el8                     rhel-baseos     352 k
 openssl-libs                  x86_64  1:1.1.1k-6.el8_5                  rhel-baseos     1.5 M
 p11-kit                       x86_64  0.23.22-1.el8                     rhel-baseos     324 k
 p11-kit-trust                 x86_64  0.23.22-1.el8                     rhel-baseos     137 k
 pam                           x86_64  1.3.1-15.el8                      rhel-baseos     738 k
 pcre                          x86_64  8.42-6.el8                        rhel-baseos     211 k
 pcre2                         x86_64  10.32-2.el8                       rhel-baseos     246 k
 perl-srpm-macros              noarch  1-25.el8                          rhel-appstream   11 k
 pkgconf                       x86_64  1.4.2-1.el8                       rhel-baseos      38 k
 pkgconf-m4                    noarch  1.4.2-1.el8                       rhel-baseos      17 k
 pkgconf-pkg-config            x86_64  1.4.2-1.el8                       rhel-baseos      15 k
 platform-python               x86_64  3.6.8-41.el8                      rhel-baseos      85 k
 platform-python-setuptools    noarch  39.2.0-6.el8                      rhel-baseos     632 k
 popt                          x86_64  1.18-1.el8                        rhel-baseos      61 k
 publicsuffix-list-dafsa       noarch  20180723-1.el8                    rhel-baseos      56 k
 python-rpm-macros             noarch  3-41.el8                          rhel-appstream   15 k
 python-srpm-macros            noarch  3-41.el8                          rhel-appstream   15 k
 python2-rpm-macros            noarch  3-38.module+el8.1.0+3111+de3f2d8e rhel-appstream   13 k
 python3-libs                  x86_64  3.6.8-41.el8                      rhel-baseos     7.8 M
 python3-pip-wheel             noarch  9.0.3-20.el8                      rhel-baseos     1.0 M
 python3-rpm-macros            noarch  3-41.el8                          rhel-appstream   14 k
 python3-setuptools-wheel      noarch  39.2.0-6.el8                      rhel-baseos     289 k
 qt5-srpm-macros               noarch  5.15.2-1.el8                      rhel-appstream   11 k
 readline                      x86_64  7.0-10.el8                        rhel-baseos     199 k
 rpm                           x86_64  4.14.3-19.el8_5.2                 rhel-baseos     543 k
 rpm-build-libs                x86_64  4.14.3-19.el8_5.2                 rhel-baseos     157 k
 rpm-libs                      x86_64  4.14.3-19.el8_5.2                 rhel-baseos     345 k
 rust-srpm-macros              noarch  5-2.el8                           rhel-appstream  9.3 k
 setup                         noarch  2.12.2-6.el8                      rhel-baseos     181 k
 sqlite-libs                   x86_64  3.26.0-15.el8                     rhel-baseos     581 k
 systemd-libs                  x86_64  239-51.el8_5.5                    rhel-baseos     1.1 M
 tpm2-tss                      x86_64  2.3.2-4.el8                       rhel-baseos     275 k
 tzdata                        noarch  2022a-1.el8                       rhel-baseos     474 k
 xz-libs                       x86_64  5.2.4-3.el8                       rhel-baseos      94 k
 zip                           x86_64  3.0-23.el8                        rhel-baseos     270 k
 zlib                          x86_64  1.2.11-18.el8_5                   rhel-baseos     102 k
 zstd                          x86_64  1.4.4-1.el8                       rhel-appstream  393 k
Enabling module streams:
 python27                              2.7                                                    

Transaction Summary
==============================================================================================
Install  170 Packages

Total download size: 159 M
Installed size: 815 M
Downloading Packages:
(1/170): cpio-2.13-8.el8.x86_64.rpm             2.2 MB/s | 288 kB     00:00    
(2/170): libassuan-2.5.1-3.el8.x86_64.rpm       259 kB/s |  83 kB     00:00    
(3/170): cracklib-2.9.6-15.el8.x86_64.rpm       286 kB/s |  93 kB     00:00    
(4/170): libutempter-1.1.6-14.el8.x86_64.rpm    135 kB/s |  32 kB     00:00    
(5/170): readline-7.0-10.el8.x86_64.rpm         1.2 MB/s | 199 kB     00:00    
(6/170): grep-3.1-6.el8.x86_64.rpm              1.5 MB/s | 274 kB     00:00    
(7/170): gdbm-1.18-1.el8.x86_64.rpm             919 kB/s | 130 kB     00:00    
(8/170): pkgconf-1.4.2-1.el8.x86_64.rpm         549 kB/s |  38 kB     00:00    
(9/170): npth-1.5-4.el8.x86_64.rpm              322 kB/s |  26 kB     00:00    
(10/170): libsigsegv-2.11-5.el8.x86_64.rpm      271 kB/s |  30 kB     00:00    
(11/170): libattr-2.4.48-3.el8.x86_64.rpm       483 kB/s |  27 kB     00:00    
(12/170): libtasn1-4.13-3.el8.x86_64.rpm        796 kB/s |  76 kB     00:00    
(13/170): pkgconf-pkg-config-1.4.2-1.el8.x86_64 252 kB/s |  15 kB     00:00    
(14/170): bzip2-libs-1.0.6-26.el8.x86_64.rpm    597 kB/s |  48 kB     00:00    
(15/170): mpfr-3.1.6-1.el8.x86_64.rpm           1.9 MB/s | 221 kB     00:00    
(16/170): zip-3.0-23.el8.x86_64.rpm             1.4 MB/s | 270 kB     00:00    
(17/170): libunistring-0.9.9-3.el8.x86_64.rpm   2.7 MB/s | 422 kB     00:00    
(18/170): cracklib-dicts-2.9.6-15.el8.x86_64.rp 8.6 MB/s | 4.0 MB     00:00    
(19/170): bzip2-1.0.6-26.el8.x86_64.rpm         874 kB/s |  60 kB     00:00    
(20/170): xz-libs-5.2.4-3.el8.x86_64.rpm        1.6 MB/s |  94 kB     00:00    
(21/170): libnsl2-1.2.0-2.20180605git4a062cf.el 991 kB/s |  58 kB     00:00    
(22/170): libverto-0.3.0-5.el8.x86_64.rpm       492 kB/s |  24 kB     00:00    
(23/170): libpkgconf-1.4.2-1.el8.x86_64.rpm     678 kB/s |  35 kB     00:00    
(24/170): publicsuffix-list-dafsa-20180723-1.el 977 kB/s |  56 kB     00:00    
(25/170): gdbm-libs-1.18-1.el8.x86_64.rpm       1.0 MB/s |  60 kB     00:00    
(26/170): pkgconf-m4-1.4.2-1.el8.noarch.rpm     306 kB/s |  17 kB     00:00    
(27/170): xz-5.2.4-3.el8.x86_64.rpm             2.2 MB/s | 153 kB     00:00    
(28/170): libacl-2.2.53-1.el8.x86_64.rpm        507 kB/s |  35 kB     00:00    
(29/170): basesystem-11-5.el8.noarch.rpm        149 kB/s |  11 kB     00:00    
(30/170): findutils-4.6.0-20.el8.x86_64.rpm     2.7 MB/s | 528 kB     00:00    
(31/170): libtool-ltdl-2.4.6-25.el8.x86_64.rpm  472 kB/s |  58 kB     00:00    
(32/170): libksba-1.3.5-7.el8.x86_64.rpm        999 kB/s | 135 kB     00:00    
(33/170): libgpg-error-1.31-1.el8.x86_64.rpm    1.9 MB/s | 242 kB     00:00    
(34/170): diffutils-3.6-6.el8.x86_64.rpm        2.4 MB/s | 359 kB     00:00    
(35/170): gmp-6.1.2-10.el8.x86_64.rpm           1.6 MB/s | 321 kB     00:00    
(36/170): libidn2-2.2.0-1.el8.x86_64.rpm        793 kB/s |  94 kB     00:00    
(37/170): patch-2.7.6-11.el8.x86_64.rpm         2.0 MB/s | 138 kB     00:00    
(38/170): info-6.5-6.el8.x86_64.rpm             2.6 MB/s | 198 kB     00:00    
(39/170): libnghttp2-1.33.0-3.el8_2.1.x86_64.rp 867 kB/s |  77 kB     00:00    
(40/170): audit-libs-3.0-0.17.20191104git1c2f87 1.2 MB/s | 116 kB     00:00    
(41/170): make-4.2.1-10.el8.x86_64.rpm          3.6 MB/s | 498 kB     00:00    
(42/170): libzstd-1.4.4-1.el8.x86_64.rpm        1.8 MB/s | 266 kB     00:00    
(43/170): setup-2.12.2-6.el8.noarch.rpm         1.5 MB/s | 181 kB     00:00    
(44/170): sed-4.5-2.el8.x86_64.rpm              2.1 MB/s | 298 kB     00:00    
(45/170): libffi-3.1-22.el8.x86_64.rpm          393 kB/s |  37 kB     00:00    
(46/170): gnupg2-2.2.20-2.el8.x86_64.rpm        8.1 MB/s | 2.4 MB     00:00    
(47/170): python3-setuptools-wheel-39.2.0-6.el8 2.2 MB/s | 289 kB     00:00    
(48/170): libusbx-1.0.23-4.el8.x86_64.rpm       867 kB/s |  74 kB     00:00    
(49/170): tar-1.30-5.el8.x86_64.rpm             4.0 MB/s | 838 kB     00:00    
(50/170): libbabeltrace-1.5.4-3.el8.x86_64.rpm  1.5 MB/s | 200 kB     00:00    
(51/170): pcre2-10.32-2.el8.x86_64.rpm          2.1 MB/s | 246 kB     00:00    
(52/170): platform-python-setuptools-39.2.0-6.e 3.0 MB/s | 632 kB     00:00    
(53/170): p11-kit-trust-0.23.22-1.el8.x86_64.rp 877 kB/s | 137 kB     00:00    
(54/170): libpwquality-1.4.4-3.el8.x86_64.rpm   1.0 MB/s | 107 kB     00:00    
(55/170): libpsl-0.20.2-6.el8.x86_64.rpm        763 kB/s |  61 kB     00:00    
(56/170): popt-1.18-1.el8.x86_64.rpm            779 kB/s |  61 kB     00:00    
(57/170): libselinux-2.9-5.el8.x86_64.rpm       1.9 MB/s | 165 kB     00:00    
(58/170): brotli-1.0.6-3.el8.x86_64.rpm         2.2 MB/s | 323 kB     00:00    
(59/170): unzip-6.0-45.el8_4.x86_64.rpm         2.4 MB/s | 195 kB     00:00    
(60/170): gawk-4.2.1-2.el8.x86_64.rpm           4.7 MB/s | 1.1 MB     00:00    
(61/170): lz4-libs-1.8.3-3.el8_4.x86_64.rpm     878 kB/s |  66 kB     00:00    
(62/170): ima-evm-utils-1.3.2-12.el8.x86_64.rpm 866 kB/s |  64 kB     00:00    
(63/170): libsemanage-2.9-6.el8.x86_64.rpm      2.4 MB/s | 165 kB     00:00    
(64/170): libcap-2.26-5.el8.x86_64.rpm          1.1 MB/s |  60 kB     00:00    
(65/170): libxcrypt-devel-4.1.1-6.el8.x86_64.rp 449 kB/s |  25 kB     00:00    
(66/170): p11-kit-0.23.22-1.el8.x86_64.rpm      3.9 MB/s | 324 kB     00:00    
(67/170): elfutils-0.185-1.el8.x86_64.rpm       4.4 MB/s | 540 kB     00:00    
(68/170): pam-1.3.1-15.el8.x86_64.rpm           4.9 MB/s | 738 kB     00:00    
(69/170): elfutils-libelf-0.185-1.el8.x86_64.rp 1.2 MB/s | 221 kB     00:00    
(70/170): tpm2-tss-2.3.2-4.el8.x86_64.rpm       3.5 MB/s | 275 kB     00:00    
(71/170): pcre-8.42-6.el8.x86_64.rpm            1.5 MB/s | 211 kB     00:00    
(72/170): openldap-2.4.46-18.el8.x86_64.rpm     3.6 MB/s | 352 kB     00:00    
(73/170): libuuid-2.32.1-28.el8.x86_64.rpm      1.1 MB/s |  96 kB     00:00    
(74/170): which-2.21-16.el8.x86_64.rpm          514 kB/s |  49 kB     00:00    
(75/170): libmount-2.32.1-28.el8.x86_64.rpm     1.6 MB/s | 234 kB     00:00    
(76/170): curl-7.61.1-22.el8.x86_64.rpm         2.2 MB/s | 351 kB     00:00    
(77/170): python3-libs-3.6.8-41.el8.x86_64.rpm   19 MB/s | 7.8 MB     00:00    
(78/170): libblkid-2.32.1-28.el8.x86_64.rpm     1.9 MB/s | 217 kB     00:00    
(79/170): nettle-3.4.1-7.el8.x86_64.rpm         3.8 MB/s | 301 kB     00:00    
(80/170): coreutils-common-8.30-12.el8.x86_64.r 8.9 MB/s | 2.0 MB     00:00    
(81/170): libssh-0.9.4-3.el8.x86_64.rpm         1.3 MB/s | 215 kB     00:00    
(82/170): libcurl-7.61.1-22.el8.x86_64.rpm      3.1 MB/s | 301 kB     00:00    
(83/170): crypto-policies-20210617-1.gitc776d3e 823 kB/s |  63 kB     00:00    
(84/170): platform-python-3.6.8-41.el8.x86_64.r 1.2 MB/s |  85 kB     00:00    
(85/170): libcom_err-1.45.6-2.el8.x86_64.rpm    592 kB/s |  49 kB     00:00    
(86/170): ca-certificates-2021.2.50-80.0.el8_4. 4.4 MB/s | 390 kB     00:00    
(87/170): ncurses-libs-6.1-9.20180224.el8.x86_6 3.4 MB/s | 334 kB     00:00    
(88/170): libdb-utils-5.3.28-42.el8_4.x86_64.rp 1.6 MB/s | 150 kB     00:00    
(89/170): filesystem-3.8-6.el8.x86_64.rpm       6.3 MB/s | 1.1 MB     00:00    
(90/170): python3-pip-wheel-9.0.3-20.el8.noarch 5.9 MB/s | 1.0 MB     00:00    
(91/170): krb5-libs-1.18.2-14.el8.x86_64.rpm    5.8 MB/s | 840 kB     00:00    
(92/170): libxcrypt-4.1.1-6.el8.x86_64.rpm      604 kB/s |  73 kB     00:00    
(93/170): libtirpc-1.1.4-5.el8.x86_64.rpm       563 kB/s | 112 kB     00:00    
(94/170): glib2-2.56.4-156.el8.x86_64.rpm        11 MB/s | 2.5 MB     00:00    
(95/170): libcap-ng-0.7.11-1.el8.x86_64.rpm     701 kB/s |  33 kB     00:00    
(96/170): chkconfig-1.19.1-1.el8.x86_64.rpm     1.2 MB/s | 198 kB     00:00    
(97/170): libdb-5.3.28-42.el8_4.x86_64.rpm      8.2 MB/s | 751 kB     00:00    
(98/170): file-libs-5.33-20.el8.x86_64.rpm      3.0 MB/s | 543 kB     00:00    
(99/170): file-5.33-20.el8.x86_64.rpm           1.0 MB/s |  77 kB     00:00    
(100/170): bash-4.4.20-2.el8.x86_64.rpm         8.4 MB/s | 1.5 MB     00:00    
(101/170): ncurses-6.1-9.20180224.el8.x86_64.rp 3.7 MB/s | 387 kB     00:00    
(102/170): coreutils-8.30-12.el8.x86_64.rpm      11 MB/s | 1.2 MB     00:00    
(103/170): elfutils-libs-0.185-1.el8.x86_64.rpm 3.7 MB/s | 292 kB     00:00    
(104/170): libgcrypt-1.8.5-6.el8.x86_64.rpm     2.9 MB/s | 463 kB     00:00    
(105/170): libssh-config-0.9.4-3.el8.noarch.rpm 102 kB/s |  19 kB     00:00    
(106/170): libsepol-2.9-3.el8.x86_64.rpm        2.4 MB/s | 340 kB     00:00    
(107/170): shadow-utils-4.6-14.el8.x86_64.rpm   6.5 MB/s | 1.2 MB     00:00    
(108/170): glibc-common-2.28-164.el8_5.3.x86_64 6.8 MB/s | 1.3 MB     00:00    
(109/170): libgcc-8.5.0-4.el8_5.x86_64.rpm      1.1 MB/s |  80 kB     00:00    
(110/170): openssl-libs-1.1.1k-6.el8_5.x86_64.r  12 MB/s | 1.5 MB     00:00    
(111/170): keyutils-libs-1.5.10-9.el8.x86_64.rp 446 kB/s |  34 kB     00:00    
(112/170): libfdisk-2.32.1-28.el8.x86_64.rpm    3.3 MB/s | 251 kB     00:00    
(113/170): util-linux-2.32.1-28.el8.x86_64.rpm   12 MB/s | 2.5 MB     00:00    
(114/170): tzdata-2022a-1.el8.noarch.rpm        2.5 MB/s | 474 kB     00:00    
(115/170): binutils-2.30-108.el8_5.1.x86_64.rpm  19 MB/s | 5.8 MB     00:00    
(116/170): ncurses-base-6.1-9.20180224.el8.noar 900 kB/s |  81 kB     00:00    
(117/170): libgomp-8.5.0-4.el8_5.x86_64.rpm     2.4 MB/s | 206 kB     00:00    
(118/170): glibc-headers-2.28-164.el8_5.3.x86_6 5.3 MB/s | 480 kB     00:00    
(119/170): redhat-release-8.5-0.8.el8.x86_64.rp 377 kB/s |  44 kB     00:00    
(120/170): gnutls-3.6.16-4.el8.x86_64.rpm       7.4 MB/s | 1.0 MB     00:00    
(121/170): libarchive-3.3.3-3.el8_5.x86_64.rpm  4.2 MB/s | 360 kB     00:00    
(122/170): rpm-build-libs-4.14.3-19.el8_5.2.x86 1.8 MB/s | 157 kB     00:00    
(123/170): libxml2-2.9.7-12.el8_5.x86_64.rpm    5.1 MB/s | 696 kB     00:00    
(124/170): expat-2.2.5-4.el8_5.3.x86_64.rpm     1.0 MB/s | 113 kB     00:00    
(125/170): sqlite-libs-3.26.0-15.el8.x86_64.rpm 4.8 MB/s | 581 kB     00:00    
(126/170): cyrus-sasl-lib-2.1.27-6.el8_5.x86_64 1.3 MB/s | 123 kB     00:00    
(127/170): rpm-libs-4.14.3-19.el8_5.2.x86_64.rp 4.8 MB/s | 345 kB     00:00    
(128/170): glibc-devel-2.28-164.el8_5.3.x86_64.  10 MB/s | 1.0 MB     00:00    
(129/170): elfutils-default-yama-scope-0.185-1. 537 kB/s |  49 kB     00:00    
(130/170): systemd-libs-239-51.el8_5.5.x86_64.r 6.2 MB/s | 1.1 MB     00:00    
(131/170): lua-libs-5.3.4-12.el8.x86_64.rpm     1.6 MB/s | 118 kB     00:00    
(132/170): libsmartcols-2.32.1-28.el8.x86_64.rp 2.2 MB/s | 177 kB     00:00    
(133/170): libstdc++-8.5.0-4.el8_5.x86_64.rpm   6.0 MB/s | 453 kB     00:00    
(134/170): rpm-4.14.3-19.el8_5.2.x86_64.rpm     3.8 MB/s | 543 kB     00:00    
(135/170): glibc-2.28-164.el8_5.3.x86_64.rpm     14 MB/s | 3.6 MB     00:00    
(136/170): gzip-1.9-13.el8_5.x86_64.rpm         2.2 MB/s | 167 kB     00:00    
(137/170): zlib-1.2.11-18.el8_5.x86_64.rpm      1.2 MB/s | 102 kB     00:00    
(138/170): rust-srpm-macros-5-2.el8.noarch.rpm  112 kB/s | 9.3 kB     00:00    
(139/170): ocaml-srpm-macros-5-4.el8.noarch.rpm 149 kB/s | 9.5 kB     00:00    
(140/170): kernel-headers-4.18.0-348.23.1.el8_5  25 MB/s | 8.3 MB     00:00    
(141/170): ghc-srpm-macros-1.4.2-7.el8.noarch.r 114 kB/s | 9.4 kB     00:00    
(142/170): perl-srpm-macros-1-25.el8.noarch.rpm 177 kB/s |  11 kB     00:00    
(143/170): openblas-srpm-macros-2-2.el8.noarch. 101 kB/s | 8.0 kB     00:00    
(144/170): gc-7.6.4-3.el8.x86_64.rpm            1.7 MB/s | 109 kB     00:00    
(145/170): libatomic_ops-7.6.2-3.el8.x86_64.rpm 520 kB/s |  38 kB     00:00    
(146/170): glibc-all-langpacks-2.28-164.el8_5.3  32 MB/s |  25 MB     00:00    
(147/170): isl-0.16.1-6.el8.x86_64.rpm           11 MB/s | 841 kB     00:00    
(148/170): libipt-1.6.1-8.el8.x86_64.rpm        1.0 MB/s |  50 kB     00:00    
(149/170): guile-2.0.14-7.el8.x86_64.rpm         27 MB/s | 3.5 MB     00:00    
(150/170): python2-rpm-macros-3-38.module+el8.1 266 kB/s |  13 kB     00:00    
(151/170): zstd-1.4.4-1.el8.x86_64.rpm          7.9 MB/s | 393 kB     00:00    
(152/170): redhat-rpm-config-125-1.el8.noarch.r 1.8 MB/s |  87 kB     00:00    
(153/170): libmpc-1.1.0-9.1.el8.x86_64.rpm      861 kB/s |  61 kB     00:00    
(154/170): python-srpm-macros-3-41.el8.noarch.r 223 kB/s |  15 kB     00:00    
(155/170): efi-srpm-macros-3-3.el8.noarch.rpm   524 kB/s |  22 kB     00:00    
(156/170): python3-rpm-macros-3-41.el8.noarch.r 279 kB/s |  14 kB     00:00    
(157/170): go-srpm-macros-2-17.el8.noarch.rpm   292 kB/s |  13 kB     00:00    
(158/170): qt5-srpm-macros-5.15.2-1.el8.noarch. 192 kB/s |  11 kB     00:00    
(159/170): python-rpm-macros-3-41.el8.noarch.rp 103 kB/s |  15 kB     00:00    
(160/170): dwz-0.12-10.el8.x86_64.rpm           819 kB/s | 109 kB     00:00    
(161/170): gdb-headless-8.2-16.el8.x86_64.rpm    17 MB/s | 3.7 MB     00:00    
(162/170): annobin-9.72-1.el8_5.2.x86_64.rpm    1.3 MB/s | 111 kB     00:00    
(163/170): libstdc++-devel-8.5.0-4.el8_5.x86_64 7.1 MB/s | 2.0 MB     00:00    
(164/170): gcc-c++-8.5.0-4.el8_5.x86_64.rpm      23 MB/s |  12 MB     00:00    
(165/170): rpm-build-4.14.3-19.el8_5.2.x86_64.r 1.3 MB/s | 174 kB     00:00    
(166/170): cpp-8.5.0-4.el8_5.x86_64.rpm          17 MB/s |  10 MB     00:00    
(167/170): epel-rpm-macros-8-28.noarch.rpm       71 kB/s |  22 kB     00:00    
(168/170): fpc-srpm-macros-1.3-1.el8.noarch.rpm  82 kB/s | 8.2 kB     00:00    
(169/170): gcc-8.5.0-4.el8_5.x86_64.rpm          33 MB/s |  23 MB     00:00    
(170/170): lua-srpm-macros-1-3.el8.noarch.rpm    58 kB/s | 8.1 kB     00:00    
--------------------------------------------------------------------------------
Total                                            21 MB/s | 159 MB     00:07     
Red Hat Enterprise Linux - BaseOS               3.1 MB/s | 3.1 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Importing GPG key 0x2FA658E0:
 Userid     : "Red Hat, Inc. (auxiliary key) <security@redhat.com>"
 Fingerprint: 43A6 E49C 4A38 F4BE 9ABF 2A53 4568 9C88 2FA6 58E0
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Extra Packages for Enterprise Linux 8 - x86_64  1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x2F86D6A1:
 Userid     : "Fedora EPEL (8) <epel@fedoraproject.org>"
 Fingerprint: 94E2 79EB 8D8F 25B2 1810 ADF1 21EA 45AB 2F86 D6A1
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-8
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.8-6.el8.x86_64                            1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-8.5.0-4.el8_5.x86_64                          1/170 
  Running scriptlet: libgcc-8.5.0-4.el8_5.x86_64                          1/170 
  Installing       : crypto-policies-20210617-1.gitc776d3e.el8.noarch     2/170 
  Running scriptlet: crypto-policies-20210617-1.gitc776d3e.el8.noarch     2/170 
  Installing       : python-srpm-macros-3-41.el8.noarch                   3/170 
  Installing       : python-rpm-macros-3-41.el8.noarch                    4/170 
  Installing       : redhat-release-8.5-0.8.el8.x86_64                    5/170 
  Installing       : setup-2.12.2-6.el8.noarch                            6/170 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.12.2-6.el8.noarch                            6/170 
  Installing       : filesystem-3.8-6.el8.x86_64                          7/170 
  Installing       : python3-pip-wheel-9.0.3-20.el8.noarch                8/170 
  Installing       : python3-setuptools-wheel-39.2.0-6.el8.noarch         9/170 
  Installing       : basesystem-11-5.el8.noarch                          10/170 
  Installing       : python3-rpm-macros-3-41.el8.noarch                  11/170 
  Installing       : fpc-srpm-macros-1.3-1.el8.noarch                    12/170 
  Installing       : qt5-srpm-macros-5.15.2-1.el8.noarch                 13/170 
  Installing       : go-srpm-macros-2-17.el8.noarch                      14/170 
  Installing       : python2-rpm-macros-3-38.module+el8.1.0+3111+de3f    15/170 
  Installing       : perl-srpm-macros-1-25.el8.noarch                    16/170 
  Installing       : openblas-srpm-macros-2-2.el8.noarch                 17/170 
  Installing       : ghc-srpm-macros-1.4.2-7.el8.noarch                  18/170 
  Installing       : ocaml-srpm-macros-5-4.el8.noarch                    19/170 
  Installing       : rust-srpm-macros-5-2.el8.noarch                     20/170 
  Installing       : kernel-headers-4.18.0-348.23.1.el8_5.x86_64         21/170 
  Installing       : ncurses-base-6.1-9.20180224.el8.noarch              22/170 
  Installing       : tzdata-2022a-1.el8.noarch                           23/170 
  Installing       : pcre2-10.32-2.el8.x86_64                            24/170 
  Installing       : libselinux-2.9-5.el8.x86_64                         25/170 
  Installing       : ncurses-libs-6.1-9.20180224.el8.x86_64              26/170 
  Installing       : glibc-common-2.28-164.el8_5.3.x86_64                27/170 
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  Installing       : pcre-8.42-6.el8.x86_64                              71/170 
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  Installing       : expat-2.2.5-4.el8_5.3.x86_64                        76/170 
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  Installing       : zip-3.0-23.el8.x86_64                               81/170 
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  Installing       : ncurses-6.1-9.20180224.el8.x86_64                  108/170 
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  Installing       : libpwquality-1.4.4-3.el8.x86_64                    127/170 
  Installing       : pam-1.3.1-15.el8.x86_64                            128/170 
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  Verifying        : lz4-libs-1.8.3-3.el8_4.x86_64                       61/170 
  Verifying        : ima-evm-utils-1.3.2-12.el8.x86_64                   62/170 
  Verifying        : libsemanage-2.9-6.el8.x86_64                        63/170 
  Verifying        : p11-kit-0.23.22-1.el8.x86_64                        64/170 
  Verifying        : libxcrypt-devel-4.1.1-6.el8.x86_64                  65/170 
  Verifying        : libcap-2.26-5.el8.x86_64                            66/170 
  Verifying        : elfutils-0.185-1.el8.x86_64                         67/170 
  Verifying        : pam-1.3.1-15.el8.x86_64                             68/170 
  Verifying        : elfutils-libelf-0.185-1.el8.x86_64                  69/170 
  Verifying        : tpm2-tss-2.3.2-4.el8.x86_64                         70/170 
  Verifying        : pcre-8.42-6.el8.x86_64                              71/170 
  Verifying        : openldap-2.4.46-18.el8.x86_64                       72/170 
  Verifying        : python3-libs-3.6.8-41.el8.x86_64                    73/170 
  Verifying        : which-2.21-16.el8.x86_64                            74/170 
  Verifying        : libuuid-2.32.1-28.el8.x86_64                        75/170 
  Verifying        : libmount-2.32.1-28.el8.x86_64                       76/170 
  Verifying        : curl-7.61.1-22.el8.x86_64                           77/170 
  Verifying        : libblkid-2.32.1-28.el8.x86_64                       78/170 
  Verifying        : coreutils-common-8.30-12.el8.x86_64                 79/170 
  Verifying        : libssh-0.9.4-3.el8.x86_64                           80/170 
  Verifying        : nettle-3.4.1-7.el8.x86_64                           81/170 
  Verifying        : libcurl-7.61.1-22.el8.x86_64                        82/170 
  Verifying        : crypto-policies-20210617-1.gitc776d3e.el8.noarch    83/170 
  Verifying        : platform-python-3.6.8-41.el8.x86_64                 84/170 
  Verifying        : libcom_err-1.45.6-2.el8.x86_64                      85/170 
  Verifying        : ncurses-libs-6.1-9.20180224.el8.x86_64              86/170 
  Verifying        : ca-certificates-2021.2.50-80.0.el8_4.noarch         87/170 
  Verifying        : libdb-utils-5.3.28-42.el8_4.x86_64                  88/170 
  Verifying        : filesystem-3.8-6.el8.x86_64                         89/170 
  Verifying        : python3-pip-wheel-9.0.3-20.el8.noarch               90/170 
  Verifying        : krb5-libs-1.18.2-14.el8.x86_64                      91/170 
  Verifying        : glib2-2.56.4-156.el8.x86_64                         92/170 
  Verifying        : libxcrypt-4.1.1-6.el8.x86_64                        93/170 
  Verifying        : libtirpc-1.1.4-5.el8.x86_64                         94/170 
  Verifying        : chkconfig-1.19.1-1.el8.x86_64                       95/170 
  Verifying        : file-libs-5.33-20.el8.x86_64                        96/170 
  Verifying        : libcap-ng-0.7.11-1.el8.x86_64                       97/170 
  Verifying        : libdb-5.3.28-42.el8_4.x86_64                        98/170 
  Verifying        : bash-4.4.20-2.el8.x86_64                            99/170 
  Verifying        : file-5.33-20.el8.x86_64                            100/170 
  Verifying        : ncurses-6.1-9.20180224.el8.x86_64                  101/170 
  Verifying        : coreutils-8.30-12.el8.x86_64                       102/170 
  Verifying        : libssh-config-0.9.4-3.el8.noarch                   103/170 
  Verifying        : libgcrypt-1.8.5-6.el8.x86_64                       104/170 
  Verifying        : elfutils-libs-0.185-1.el8.x86_64                   105/170 
  Verifying        : shadow-utils-2:4.6-14.el8.x86_64                   106/170 
  Verifying        : libsepol-2.9-3.el8.x86_64                          107/170 
  Verifying        : glibc-common-2.28-164.el8_5.3.x86_64               108/170 
  Verifying        : openssl-libs-1:1.1.1k-6.el8_5.x86_64               109/170 
  Verifying        : libgcc-8.5.0-4.el8_5.x86_64                        110/170 
  Verifying        : keyutils-libs-1.5.10-9.el8.x86_64                  111/170 
  Verifying        : libfdisk-2.32.1-28.el8.x86_64                      112/170 
  Verifying        : binutils-2.30-108.el8_5.1.x86_64                   113/170 
  Verifying        : util-linux-2.32.1-28.el8.x86_64                    114/170 
  Verifying        : tzdata-2022a-1.el8.noarch                          115/170 
  Verifying        : ncurses-base-6.1-9.20180224.el8.noarch             116/170 
  Verifying        : libgomp-8.5.0-4.el8_5.x86_64                       117/170 
  Verifying        : redhat-release-8.5-0.8.el8.x86_64                  118/170 
  Verifying        : gnutls-3.6.16-4.el8.x86_64                         119/170 
  Verifying        : glibc-headers-2.28-164.el8_5.3.x86_64              120/170 
  Verifying        : libarchive-3.3.3-3.el8_5.x86_64                    121/170 
  Verifying        : libxml2-2.9.7-12.el8_5.x86_64                      122/170 
  Verifying        : rpm-build-libs-4.14.3-19.el8_5.2.x86_64            123/170 
  Verifying        : expat-2.2.5-4.el8_5.3.x86_64                       124/170 
  Verifying        : sqlite-libs-3.26.0-15.el8.x86_64                   125/170 
  Verifying        : cyrus-sasl-lib-2.1.27-6.el8_5.x86_64               126/170 
  Verifying        : rpm-libs-4.14.3-19.el8_5.2.x86_64                  127/170 
  Verifying        : systemd-libs-239-51.el8_5.5.x86_64                 128/170 
  Verifying        : glibc-devel-2.28-164.el8_5.3.x86_64                129/170 
  Verifying        : elfutils-default-yama-scope-0.185-1.el8.noarch     130/170 
  Verifying        : lua-libs-5.3.4-12.el8.x86_64                       131/170 
  Verifying        : libsmartcols-2.32.1-28.el8.x86_64                  132/170 
  Verifying        : glibc-2.28-164.el8_5.3.x86_64                      133/170 
  Verifying        : glibc-all-langpacks-2.28-164.el8_5.3.x86_64        134/170 
  Verifying        : libstdc++-8.5.0-4.el8_5.x86_64                     135/170 
  Verifying        : rpm-4.14.3-19.el8_5.2.x86_64                       136/170 
  Verifying        : gzip-1.9-13.el8_5.x86_64                           137/170 
  Verifying        : kernel-headers-4.18.0-348.23.1.el8_5.x86_64        138/170 
  Verifying        : zlib-1.2.11-18.el8_5.x86_64                        139/170 
  Verifying        : rust-srpm-macros-5-2.el8.noarch                    140/170 
  Verifying        : ocaml-srpm-macros-5-4.el8.noarch                   141/170 
  Verifying        : ghc-srpm-macros-1.4.2-7.el8.noarch                 142/170 
  Verifying        : openblas-srpm-macros-2-2.el8.noarch                143/170 
  Verifying        : perl-srpm-macros-1-25.el8.noarch                   144/170 
  Verifying        : libatomic_ops-7.6.2-3.el8.x86_64                   145/170 
  Verifying        : gc-7.6.4-3.el8.x86_64                              146/170 
  Verifying        : guile-5:2.0.14-7.el8.x86_64                        147/170 
  Verifying        : isl-0.16.1-6.el8.x86_64                            148/170 
  Verifying        : libipt-1.6.1-8.el8.x86_64                          149/170 
  Verifying        : python2-rpm-macros-3-38.module+el8.1.0+3111+de3f   150/170 
  Verifying        : zstd-1.4.4-1.el8.x86_64                            151/170 
  Verifying        : libmpc-1.1.0-9.1.el8.x86_64                        152/170 
  Verifying        : redhat-rpm-config-125-1.el8.noarch                 153/170 
  Verifying        : python-srpm-macros-3-41.el8.noarch                 154/170 
  Verifying        : python-rpm-macros-3-41.el8.noarch                  155/170 
  Verifying        : efi-srpm-macros-3-3.el8.noarch                     156/170 
  Verifying        : python3-rpm-macros-3-41.el8.noarch                 157/170 
  Verifying        : go-srpm-macros-2-17.el8.noarch                     158/170 
  Verifying        : qt5-srpm-macros-5.15.2-1.el8.noarch                159/170 
  Verifying        : gdb-headless-8.2-16.el8.x86_64                     160/170 
  Verifying        : dwz-0.12-10.el8.x86_64                             161/170 
  Verifying        : gcc-c++-8.5.0-4.el8_5.x86_64                       162/170 
  Verifying        : libstdc++-devel-8.5.0-4.el8_5.x86_64               163/170 
  Verifying        : annobin-9.72-1.el8_5.2.x86_64                      164/170 
  Verifying        : cpp-8.5.0-4.el8_5.x86_64                           165/170 
  Verifying        : gcc-8.5.0-4.el8_5.x86_64                           166/170 
  Verifying        : rpm-build-4.14.3-19.el8_5.2.x86_64                 167/170 
  Verifying        : epel-rpm-macros-8-28.noarch                        168/170 
  Verifying        : fpc-srpm-macros-1.3-1.el8.noarch                   169/170 
  Verifying        : lua-srpm-macros-1-3.el8.noarch                     170/170 
Installed products updated.

Installed:
  annobin-9.72-1.el8_5.2.x86_64                                                 
  audit-libs-3.0-0.17.20191104git1c2f876.el8.x86_64                             
  basesystem-11-5.el8.noarch                                                    
  bash-4.4.20-2.el8.x86_64                                                      
  binutils-2.30-108.el8_5.1.x86_64                                              
  brotli-1.0.6-3.el8.x86_64                                                     
  bzip2-1.0.6-26.el8.x86_64                                                     
  bzip2-libs-1.0.6-26.el8.x86_64                                                
  ca-certificates-2021.2.50-80.0.el8_4.noarch                                   
  chkconfig-1.19.1-1.el8.x86_64                                                 
  coreutils-8.30-12.el8.x86_64                                                  
  coreutils-common-8.30-12.el8.x86_64                                           
  cpio-2.13-8.el8.x86_64                                                        
  cpp-8.5.0-4.el8_5.x86_64                                                      
  cracklib-2.9.6-15.el8.x86_64                                                  
  cracklib-dicts-2.9.6-15.el8.x86_64                                            
  crypto-policies-20210617-1.gitc776d3e.el8.noarch                              
  curl-7.61.1-22.el8.x86_64                                                     
  cyrus-sasl-lib-2.1.27-6.el8_5.x86_64                                          
  diffutils-3.6-6.el8.x86_64                                                    
  dwz-0.12-10.el8.x86_64                                                        
  efi-srpm-macros-3-3.el8.noarch                                                
  elfutils-0.185-1.el8.x86_64                                                   
  elfutils-default-yama-scope-0.185-1.el8.noarch                                
  elfutils-libelf-0.185-1.el8.x86_64                                            
  elfutils-libs-0.185-1.el8.x86_64                                              
  epel-rpm-macros-8-28.noarch                                                   
  expat-2.2.5-4.el8_5.3.x86_64                                                  
  file-5.33-20.el8.x86_64                                                       
  file-libs-5.33-20.el8.x86_64                                                  
  filesystem-3.8-6.el8.x86_64                                                   
  findutils-1:4.6.0-20.el8.x86_64                                               
  fpc-srpm-macros-1.3-1.el8.noarch                                              
  gawk-4.2.1-2.el8.x86_64                                                       
  gc-7.6.4-3.el8.x86_64                                                         
  gcc-8.5.0-4.el8_5.x86_64                                                      
  gcc-c++-8.5.0-4.el8_5.x86_64                                                  
  gdb-headless-8.2-16.el8.x86_64                                                
  gdbm-1:1.18-1.el8.x86_64                                                      
  gdbm-libs-1:1.18-1.el8.x86_64                                                 
  ghc-srpm-macros-1.4.2-7.el8.noarch                                            
  glib2-2.56.4-156.el8.x86_64                                                   
  glibc-2.28-164.el8_5.3.x86_64                                                 
  glibc-all-langpacks-2.28-164.el8_5.3.x86_64                                   
  glibc-common-2.28-164.el8_5.3.x86_64                                          
  glibc-devel-2.28-164.el8_5.3.x86_64                                           
  glibc-headers-2.28-164.el8_5.3.x86_64                                         
  gmp-1:6.1.2-10.el8.x86_64                                                     
  gnupg2-2.2.20-2.el8.x86_64                                                    
  gnutls-3.6.16-4.el8.x86_64                                                    
  go-srpm-macros-2-17.el8.noarch                                                
  grep-3.1-6.el8.x86_64                                                         
  guile-5:2.0.14-7.el8.x86_64                                                   
  gzip-1.9-13.el8_5.x86_64                                                      
  ima-evm-utils-1.3.2-12.el8.x86_64                                             
  info-6.5-6.el8.x86_64                                                         
  isl-0.16.1-6.el8.x86_64                                                       
  kernel-headers-4.18.0-348.23.1.el8_5.x86_64                                   
  keyutils-libs-1.5.10-9.el8.x86_64                                             
  krb5-libs-1.18.2-14.el8.x86_64                                                
  libacl-2.2.53-1.el8.x86_64                                                    
  libarchive-3.3.3-3.el8_5.x86_64                                               
  libassuan-2.5.1-3.el8.x86_64                                                  
  libatomic_ops-7.6.2-3.el8.x86_64                                              
  libattr-2.4.48-3.el8.x86_64                                                   
  libbabeltrace-1.5.4-3.el8.x86_64                                              
  libblkid-2.32.1-28.el8.x86_64                                                 
  libcap-2.26-5.el8.x86_64                                                      
  libcap-ng-0.7.11-1.el8.x86_64                                                 
  libcom_err-1.45.6-2.el8.x86_64                                                
  libcurl-7.61.1-22.el8.x86_64                                                  
  libdb-5.3.28-42.el8_4.x86_64                                                  
  libdb-utils-5.3.28-42.el8_4.x86_64                                            
  libfdisk-2.32.1-28.el8.x86_64                                                 
  libffi-3.1-22.el8.x86_64                                                      
  libgcc-8.5.0-4.el8_5.x86_64                                                   
  libgcrypt-1.8.5-6.el8.x86_64                                                  
  libgomp-8.5.0-4.el8_5.x86_64                                                  
  libgpg-error-1.31-1.el8.x86_64                                                
  libidn2-2.2.0-1.el8.x86_64                                                    
  libipt-1.6.1-8.el8.x86_64                                                     
  libksba-1.3.5-7.el8.x86_64                                                    
  libmount-2.32.1-28.el8.x86_64                                                 
  libmpc-1.1.0-9.1.el8.x86_64                                                   
  libnghttp2-1.33.0-3.el8_2.1.x86_64                                            
  libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64                                 
  libpkgconf-1.4.2-1.el8.x86_64                                                 
  libpsl-0.20.2-6.el8.x86_64                                                    
  libpwquality-1.4.4-3.el8.x86_64                                               
  libselinux-2.9-5.el8.x86_64                                                   
  libsemanage-2.9-6.el8.x86_64                                                  
  libsepol-2.9-3.el8.x86_64                                                     
  libsigsegv-2.11-5.el8.x86_64                                                  
  libsmartcols-2.32.1-28.el8.x86_64                                             
  libssh-0.9.4-3.el8.x86_64                                                     
  libssh-config-0.9.4-3.el8.noarch                                              
  libstdc++-8.5.0-4.el8_5.x86_64                                                
  libstdc++-devel-8.5.0-4.el8_5.x86_64                                          
  libtasn1-4.13-3.el8.x86_64                                                    
  libtirpc-1.1.4-5.el8.x86_64                                                   
  libtool-ltdl-2.4.6-25.el8.x86_64                                              
  libunistring-0.9.9-3.el8.x86_64                                               
  libusbx-1.0.23-4.el8.x86_64                                                   
  libutempter-1.1.6-14.el8.x86_64                                               
  libuuid-2.32.1-28.el8.x86_64                                                  
  libverto-0.3.0-5.el8.x86_64                                                   
  libxcrypt-4.1.1-6.el8.x86_64                                                  
  libxcrypt-devel-4.1.1-6.el8.x86_64                                            
  libxml2-2.9.7-12.el8_5.x86_64                                                 
  libzstd-1.4.4-1.el8.x86_64                                                    
  lua-libs-5.3.4-12.el8.x86_64                                                  
  lua-srpm-macros-1-3.el8.noarch                                                
  lz4-libs-1.8.3-3.el8_4.x86_64                                                 
  make-1:4.2.1-10.el8.x86_64                                                    
  mpfr-3.1.6-1.el8.x86_64                                                       
  ncurses-6.1-9.20180224.el8.x86_64                                             
  ncurses-base-6.1-9.20180224.el8.noarch                                        
  ncurses-libs-6.1-9.20180224.el8.x86_64                                        
  nettle-3.4.1-7.el8.x86_64                                                     
  npth-1.5-4.el8.x86_64                                                         
  ocaml-srpm-macros-5-4.el8.noarch                                              
  openblas-srpm-macros-2-2.el8.noarch                                           
  openldap-2.4.46-18.el8.x86_64                                                 
  openssl-libs-1:1.1.1k-6.el8_5.x86_64                                          
  p11-kit-0.23.22-1.el8.x86_64                                                  
  p11-kit-trust-0.23.22-1.el8.x86_64                                            
  pam-1.3.1-15.el8.x86_64                                                       
  patch-2.7.6-11.el8.x86_64                                                     
  pcre-8.42-6.el8.x86_64                                                        
  pcre2-10.32-2.el8.x86_64                                                      
  perl-srpm-macros-1-25.el8.noarch                                              
  pkgconf-1.4.2-1.el8.x86_64                                                    
  pkgconf-m4-1.4.2-1.el8.noarch                                                 
  pkgconf-pkg-config-1.4.2-1.el8.x86_64                                         
  platform-python-3.6.8-41.el8.x86_64                                           
  platform-python-setuptools-39.2.0-6.el8.noarch                                
  popt-1.18-1.el8.x86_64                                                        
  publicsuffix-list-dafsa-20180723-1.el8.noarch                                 
  python-rpm-macros-3-41.el8.noarch                                             
  python-srpm-macros-3-41.el8.noarch                                            
  python2-rpm-macros-3-38.module+el8.1.0+3111+de3f2d8e.noarch                   
  python3-libs-3.6.8-41.el8.x86_64                                              
  python3-pip-wheel-9.0.3-20.el8.noarch                                         
  python3-rpm-macros-3-41.el8.noarch                                            
  python3-setuptools-wheel-39.2.0-6.el8.noarch                                  
  qt5-srpm-macros-5.15.2-1.el8.noarch                                           
  readline-7.0-10.el8.x86_64                                                    
  redhat-release-8.5-0.8.el8.x86_64                                             
  redhat-rpm-config-125-1.el8.noarch                                            
  rpm-4.14.3-19.el8_5.2.x86_64                                                  
  rpm-build-4.14.3-19.el8_5.2.x86_64                                            
  rpm-build-libs-4.14.3-19.el8_5.2.x86_64                                       
  rpm-libs-4.14.3-19.el8_5.2.x86_64                                             
  rust-srpm-macros-5-2.el8.noarch                                               
  sed-4.5-2.el8.x86_64                                                          
  setup-2.12.2-6.el8.noarch                                                     
  shadow-utils-2:4.6-14.el8.x86_64                                              
  sqlite-libs-3.26.0-15.el8.x86_64                                              
  systemd-libs-239-51.el8_5.5.x86_64                                            
  tar-2:1.30-5.el8.x86_64                                                       
  tpm2-tss-2.3.2-4.el8.x86_64                                                   
  tzdata-2022a-1.el8.noarch                                                     
  unzip-6.0-45.el8_4.x86_64                                                     
  util-linux-2.32.1-28.el8.x86_64                                               
  which-2.21-16.el8.x86_64                                                      
  xz-5.2.4-3.el8.x86_64                                                         
  xz-libs-5.2.4-3.el8.x86_64                                                    
  zip-3.0-23.el8.x86_64                                                         
  zlib-1.2.11-18.el8_5.x86_64                                                   
  zstd-1.4.4-1.el8.x86_64                                                       

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: make-4.2.1-10.el8.x86_64
diffutils-3.6-6.el8.x86_64
fpc-srpm-macros-1.3-1.el8.noarch
gdb-headless-8.2-16.el8.x86_64
libpwquality-1.4.4-3.el8.x86_64
libnghttp2-1.33.0-3.el8_2.1.x86_64
libxml2-2.9.7-12.el8_5.x86_64
rpm-build-4.14.3-19.el8_5.2.x86_64
python3-libs-3.6.8-41.el8.x86_64
annobin-9.72-1.el8_5.2.x86_64
redhat-release-8.5-0.8.el8.x86_64
libgomp-8.5.0-4.el8_5.x86_64
libidn2-2.2.0-1.el8.x86_64
glibc-headers-2.28-164.el8_5.3.x86_64
kernel-headers-4.18.0-348.23.1.el8_5.x86_64
cracklib-2.9.6-15.el8.x86_64
pkgconf-pkg-config-1.4.2-1.el8.x86_64
findutils-4.6.0-20.el8.x86_64
elfutils-default-yama-scope-0.185-1.el8.noarch
rpm-4.14.3-19.el8_5.2.x86_64
libmpc-1.1.0-9.1.el8.x86_64
go-srpm-macros-2-17.el8.noarch
libacl-2.2.53-1.el8.x86_64
rpm-build-libs-4.14.3-19.el8_5.2.x86_64
platform-python-setuptools-39.2.0-6.el8.noarch
libbabeltrace-1.5.4-3.el8.x86_64
efi-srpm-macros-3-3.el8.noarch
libffi-3.1-22.el8.x86_64
audit-libs-3.0-0.17.20191104git1c2f876.el8.x86_64
mpfr-3.1.6-1.el8.x86_64
sqlite-libs-3.26.0-15.el8.x86_64
elfutils-libelf-0.185-1.el8.x86_64
libcom_err-1.45.6-2.el8.x86_64
glibc-all-langpacks-2.28-164.el8_5.3.x86_64
popt-1.18-1.el8.x86_64
qt5-srpm-macros-5.15.2-1.el8.noarch
xz-libs-5.2.4-3.el8.x86_64
nettle-3.4.1-7.el8.x86_64
brotli-1.0.6-3.el8.x86_64
basesystem-11-5.el8.noarch
libksba-1.3.5-7.el8.x86_64
ghc-srpm-macros-1.4.2-7.el8.noarch
dwz-0.12-10.el8.x86_64
setup-2.12.2-6.el8.noarch
util-linux-2.32.1-28.el8.x86_64
krb5-libs-1.18.2-14.el8.x86_64
gpg-pubkey-fd431d51-4ae0493b
libzstd-1.4.4-1.el8.x86_64
libatomic_ops-7.6.2-3.el8.x86_64
bzip2-libs-1.0.6-26.el8.x86_64
cpp-8.5.0-4.el8_5.x86_64
python3-rpm-macros-3-41.el8.noarch
coreutils-common-8.30-12.el8.x86_64
binutils-2.30-108.el8_5.1.x86_64
redhat-rpm-config-125-1.el8.noarch
openblas-srpm-macros-2-2.el8.noarch
crypto-policies-20210617-1.gitc776d3e.el8.noarch
libgcrypt-1.8.5-6.el8.x86_64
epel-rpm-macros-8-28.noarch
shadow-utils-4.6-14.el8.x86_64
libipt-1.6.1-8.el8.x86_64
elfutils-libs-0.185-1.el8.x86_64
libtirpc-1.1.4-5.el8.x86_64
sed-4.5-2.el8.x86_64
ncurses-6.1-9.20180224.el8.x86_64
python2-rpm-macros-3-38.module+el8.1.0+3111+de3f2d8e.noarch
gc-7.6.4-3.el8.x86_64
systemd-libs-239-51.el8_5.5.x86_64
curl-7.61.1-22.el8.x86_64
keyutils-libs-1.5.10-9.el8.x86_64
perl-srpm-macros-1-25.el8.noarch
libcurl-7.61.1-22.el8.x86_64
glibc-2.28-164.el8_5.3.x86_64
coreutils-8.30-12.el8.x86_64
rpm-libs-4.14.3-19.el8_5.2.x86_64
chkconfig-1.19.1-1.el8.x86_64
gcc-8.5.0-4.el8_5.x86_64
pam-1.3.1-15.el8.x86_64
p11-kit-0.23.22-1.el8.x86_64
python3-pip-wheel-9.0.3-20.el8.noarch
readline-7.0-10.el8.x86_64
gmp-6.1.2-10.el8.x86_64
libstdc++-devel-8.5.0-4.el8_5.x86_64
libuuid-2.32.1-28.el8.x86_64
gnutls-3.6.16-4.el8.x86_64
libattr-2.4.48-3.el8.x86_64
pkgconf-m4-1.4.2-1.el8.noarch
libtasn1-4.13-3.el8.x86_64
ima-evm-utils-1.3.2-12.el8.x86_64
libmount-2.32.1-28.el8.x86_64
libassuan-2.5.1-3.el8.x86_64
libsepol-2.9-3.el8.x86_64
grep-3.1-6.el8.x86_64
isl-0.16.1-6.el8.x86_64
glib2-2.56.4-156.el8.x86_64
libxcrypt-devel-4.1.1-6.el8.x86_64
npth-1.5-4.el8.x86_64
libssh-0.9.4-3.el8.x86_64
expat-2.2.5-4.el8_5.3.x86_64
unzip-6.0-45.el8_4.x86_64
libsigsegv-2.11-5.el8.x86_64
pcre2-10.32-2.el8.x86_64
libusbx-1.0.23-4.el8.x86_64
tzdata-2022a-1.el8.noarch
libdb-utils-5.3.28-42.el8_4.x86_64
which-2.21-16.el8.x86_64
gawk-4.2.1-2.el8.x86_64
ca-certificates-2021.2.50-80.0.el8_4.noarch
libutempter-1.1.6-14.el8.x86_64
libstdc++-8.5.0-4.el8_5.x86_64
publicsuffix-list-dafsa-20180723-1.el8.noarch
libblkid-2.32.1-28.el8.x86_64
gdbm-libs-1.18-1.el8.x86_64
platform-python-3.6.8-41.el8.x86_64
python3-setuptools-wheel-39.2.0-6.el8.noarch
pcre-8.42-6.el8.x86_64
libxcrypt-4.1.1-6.el8.x86_64
libsemanage-2.9-6.el8.x86_64
gdbm-1.18-1.el8.x86_64
openldap-2.4.46-18.el8.x86_64
bash-4.4.20-2.el8.x86_64
libsmartcols-2.32.1-28.el8.x86_64
zstd-1.4.4-1.el8.x86_64
pkgconf-1.4.2-1.el8.x86_64
glibc-devel-2.28-164.el8_5.3.x86_64
libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64
elfutils-0.185-1.el8.x86_64
info-6.5-6.el8.x86_64
cyrus-sasl-lib-2.1.27-6.el8_5.x86_64
libgpg-error-1.31-1.el8.x86_64
file-5.33-20.el8.x86_64
libdb-5.3.28-42.el8_4.x86_64
rust-srpm-macros-5-2.el8.noarch
lua-libs-5.3.4-12.el8.x86_64
guile-2.0.14-7.el8.x86_64
libfdisk-2.32.1-28.el8.x86_64
python-rpm-macros-3-41.el8.noarch
lz4-libs-1.8.3-3.el8_4.x86_64
openssl-libs-1.1.1k-6.el8_5.x86_64
lua-srpm-macros-1-3.el8.noarch
gpg-pubkey-2fa658e0-45700c69
cpio-2.13-8.el8.x86_64
gcc-c++-8.5.0-4.el8_5.x86_64
libtool-ltdl-2.4.6-25.el8.x86_64
libunistring-0.9.9-3.el8.x86_64
libverto-0.3.0-5.el8.x86_64
ncurses-base-6.1-9.20180224.el8.noarch
p11-kit-trust-0.23.22-1.el8.x86_64
libselinux-2.9-5.el8.x86_64
libpsl-0.20.2-6.el8.x86_64
python-srpm-macros-3-41.el8.noarch
glibc-common-2.28-164.el8_5.3.x86_64
file-libs-5.33-20.el8.x86_64
cracklib-dicts-2.9.6-15.el8.x86_64
xz-5.2.4-3.el8.x86_64
libgcc-8.5.0-4.el8_5.x86_64
ncurses-libs-6.1-9.20180224.el8.x86_64
zlib-1.2.11-18.el8_5.x86_64
tar-1.30-5.el8.x86_64
libcap-2.26-5.el8.x86_64
gpg-pubkey-2f86d6a1-5cf7cefb
filesystem-3.8-6.el8.x86_64
bzip2-1.0.6-26.el8.x86_64
gzip-1.9-13.el8_5.x86_64
libssh-config-0.9.4-3.el8.noarch
libcap-ng-0.7.11-1.el8.x86_64
tpm2-tss-2.3.2-4.el8.x86_64
gnupg2-2.2.20-2.el8.x86_64
ocaml-srpm-macros-5-4.el8.noarch
libarchive-3.3.3-3.el8_5.x86_64
patch-2.7.6-11.el8.x86_64
zip-3.0-23.el8.x86_64
libpkgconf-1.4.2-1.el8.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.el8.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-0ndou3xu/samtools/samtools.spec) Config(child) 1 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el8.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1651772144.097929 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.0 starting (python version = 3.10.2, NVR = mock-3.0-1.fc35)...
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el8.src.rpm)  Config(rhel+epel-8-x86_64)
Start: clean chroot
Finish: clean chroot
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.0
INFO: Mock Version: 3.0
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  60 kB/s | 3.7 kB     00:00    
Additional repo https_copr_be_cloud_fedoraproje  47 kB/s | 3.7 kB     00:00    
Red Hat Enterprise Linux - BaseOS                23 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             41 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  25 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64   13 kB/s | 4.7 kB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64  2.7 MB/s |  11 MB     00:04    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for samtools-1.15.1-3.el8.src.rpm
Start: build setup for samtools-1.15.1-3.el8.src.rpm
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.el8.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  51 kB/s | 3.7 kB     00:00    
Additional repo https_copr_be_cloud_fedoraproje 113 kB/s | 3.7 kB     00:00    
Red Hat Enterprise Linux - BaseOS                40 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             41 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  43 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64   35 kB/s | 4.7 kB     00:00    
Package gcc-8.5.0-4.el8_5.x86_64 is already installed.
Dependencies resolved.
================================================================================
 Package                   Arch      Version               Repository      Size
================================================================================
Installing:
 htslib-devel              x86_64    1.15.1-1.el8          copr_base      106 k
 htslib-tools              x86_64    1.15.1-1.el8          copr_base      527 k
 ncurses-devel             x86_64    6.1-9.20180224.el8    rhel-baseos    528 k
 perl-Getopt-Long          noarch    1:2.50-4.el8          rhel-baseos     63 k
 perl-interpreter          x86_64    4:5.26.3-420.el8      rhel-baseos    6.3 M
 zlib-devel                x86_64    1.2.11-18.el8_5       rhel-baseos     58 k
Installing dependencies:
 groff-base                x86_64    1.22.3-18.el8         rhel-baseos    1.0 M
 htslib                    x86_64    1.15.1-1.el8          copr_base      507 k
 ncurses-c++-libs          x86_64    6.1-9.20180224.el8    rhel-baseos     58 k
 perl-Carp                 noarch    1.42-396.el8          rhel-baseos     30 k
 perl-Encode               x86_64    4:2.97-3.el8          rhel-baseos    1.5 M
 perl-Errno                x86_64    1.28-420.el8          rhel-baseos     76 k
 perl-Exporter             noarch    5.72-396.el8          rhel-baseos     34 k
 perl-File-Path            noarch    2.15-2.el8            rhel-baseos     38 k
 perl-File-Temp            noarch    0.230.600-1.el8       rhel-baseos     63 k
 perl-HTTP-Tiny            noarch    0.074-1.el8           rhel-baseos     58 k
 perl-IO                   x86_64    1.38-420.el8          rhel-baseos    142 k
 perl-MIME-Base64          x86_64    3.15-396.el8          rhel-baseos     31 k
 perl-PathTools            x86_64    3.74-1.el8            rhel-baseos     90 k
 perl-Pod-Escapes          noarch    1:1.07-395.el8        rhel-baseos     20 k
 perl-Pod-Perldoc          noarch    3.28-396.el8          rhel-baseos     88 k
 perl-Pod-Simple           noarch    1:3.35-395.el8        rhel-baseos    213 k
 perl-Pod-Usage            noarch    4:1.69-395.el8        rhel-baseos     34 k
 perl-Scalar-List-Utils    x86_64    3:1.49-2.el8          rhel-baseos     68 k
 perl-Socket               x86_64    4:2.027-3.el8         rhel-baseos     59 k
 perl-Storable             x86_64    1:3.11-3.el8          rhel-baseos     98 k
 perl-Term-ANSIColor       noarch    4.06-396.el8          rhel-baseos     46 k
 perl-Term-Cap             noarch    1.17-395.el8          rhel-baseos     23 k
 perl-Text-ParseWords      noarch    3.30-395.el8          rhel-baseos     18 k
 perl-Text-Tabs+Wrap       noarch    2013.0523-395.el8     rhel-baseos     24 k
 perl-Time-Local           noarch    1:1.280-1.el8         rhel-baseos     34 k
 perl-Unicode-Normalize    x86_64    1.25-396.el8          rhel-baseos     82 k
 perl-constant             noarch    1.33-396.el8          rhel-baseos     25 k
 perl-libs                 x86_64    4:5.26.3-420.el8      rhel-baseos    1.6 M
 perl-macros               x86_64    4:5.26.3-420.el8      rhel-baseos     72 k
 perl-parent               noarch    1:0.237-1.el8         rhel-baseos     20 k
 perl-podlators            noarch    4.11-1.el8            rhel-baseos    118 k
 perl-threads              x86_64    1:2.21-2.el8          rhel-baseos     61 k
 perl-threads-shared       x86_64    1.58-2.el8            rhel-baseos     48 k

Transaction Summary
================================================================================
Install  39 Packages

Total download size: 14 M
Installed size: 42 M
Downloading Packages:
(1/39): htslib-tools-1.15.1-1.el8.x86_64.rpm    6.0 MB/s | 527 kB     00:00    
(2/39): htslib-devel-1.15.1-1.el8.x86_64.rpm    1.2 MB/s | 106 kB     00:00    
(3/39): htslib-1.15.1-1.el8.x86_64.rpm          1.6 MB/s | 507 kB     00:00    
(4/39): perl-Scalar-List-Utils-1.49-2.el8.x86_6 280 kB/s |  68 kB     00:00    
(5/39): perl-PathTools-3.74-1.el8.x86_64.rpm    362 kB/s |  90 kB     00:00    
(6/39): perl-threads-shared-1.58-2.el8.x86_64.r 218 kB/s |  48 kB     00:00    
(7/39): groff-base-1.22.3-18.el8.x86_64.rpm     5.1 MB/s | 1.0 MB     00:00    
(8/39): perl-Unicode-Normalize-1.25-396.el8.x86 618 kB/s |  82 kB     00:00    
(9/39): perl-MIME-Base64-3.15-396.el8.x86_64.rp 205 kB/s |  31 kB     00:00    
(10/39): perl-Encode-2.97-3.el8.x86_64.rpm      4.1 MB/s | 1.5 MB     00:00    
(11/39): perl-threads-2.21-2.el8.x86_64.rpm     488 kB/s |  61 kB     00:00    
(12/39): perl-Term-ANSIColor-4.06-396.el8.noarc 284 kB/s |  46 kB     00:00    
(13/39): perl-Pod-Simple-3.35-395.el8.noarch.rp 1.1 MB/s | 213 kB     00:00    
(14/39): perl-HTTP-Tiny-0.074-1.el8.noarch.rpm  527 kB/s |  58 kB     00:00    
(15/39): perl-Pod-Escapes-1.07-395.el8.noarch.r 212 kB/s |  20 kB     00:00    
(16/39): perl-Pod-Perldoc-3.28-396.el8.noarch.r 775 kB/s |  88 kB     00:00    
(17/39): perl-File-Path-2.15-2.el8.noarch.rpm   362 kB/s |  38 kB     00:00    
(18/39): perl-parent-0.237-1.el8.noarch.rpm     197 kB/s |  20 kB     00:00    
(19/39): perl-Text-Tabs+Wrap-2013.0523-395.el8. 221 kB/s |  24 kB     00:00    
(20/39): perl-Getopt-Long-2.50-4.el8.noarch.rpm 522 kB/s |  63 kB     00:00    
(21/39): perl-podlators-4.11-1.el8.noarch.rpm   1.2 MB/s | 118 kB     00:00    
(22/39): perl-Time-Local-1.280-1.el8.noarch.rpm 321 kB/s |  34 kB     00:00    
(23/39): perl-Carp-1.42-396.el8.noarch.rpm      301 kB/s |  30 kB     00:00    
(24/39): perl-Exporter-5.72-396.el8.noarch.rpm  291 kB/s |  34 kB     00:00    
(25/39): perl-Text-ParseWords-3.30-395.el8.noar 193 kB/s |  18 kB     00:00    
(26/39): perl-Storable-3.11-3.el8.x86_64.rpm    754 kB/s |  98 kB     00:00    
(27/39): perl-File-Temp-0.230.600-1.el8.noarch. 524 kB/s |  63 kB     00:00    
(28/39): perl-constant-1.33-396.el8.noarch.rpm  259 kB/s |  25 kB     00:00    
(29/39): perl-Term-Cap-1.17-395.el8.noarch.rpm  239 kB/s |  23 kB     00:00    
(30/39): perl-Pod-Usage-1.69-395.el8.noarch.rpm 347 kB/s |  34 kB     00:00    
(31/39): perl-Socket-2.027-3.el8.x86_64.rpm     630 kB/s |  59 kB     00:00    
(32/39): perl-libs-5.26.3-420.el8.x86_64.rpm     11 MB/s | 1.6 MB     00:00    
(33/39): perl-IO-1.38-420.el8.x86_64.rpm        1.1 MB/s | 142 kB     00:00    
(34/39): ncurses-devel-6.1-9.20180224.el8.x86_6 3.8 MB/s | 528 kB     00:00    
(35/39): ncurses-c++-libs-6.1-9.20180224.el8.x8 603 kB/s |  58 kB     00:00    
(36/39): perl-macros-5.26.3-420.el8.x86_64.rpm  632 kB/s |  72 kB     00:00    
(37/39): perl-interpreter-5.26.3-420.el8.x86_64  28 MB/s | 6.3 MB     00:00    
(38/39): perl-Errno-1.28-420.el8.x86_64.rpm     664 kB/s |  76 kB     00:00    
(39/39): zlib-devel-1.2.11-18.el8_5.x86_64.rpm  527 kB/s |  58 kB     00:00    
--------------------------------------------------------------------------------
Total                                           7.4 MB/s |  14 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : htslib-1.15.1-1.el8.x86_64                            1/39 
  Installing       : zlib-devel-1.2.11-18.el8_5.x86_64                     2/39 
  Installing       : ncurses-c++-libs-6.1-9.20180224.el8.x86_64            3/39 
  Installing       : groff-base-1.22.3-18.el8.x86_64                       4/39 
  Installing       : perl-Pod-Escapes-1:1.07-395.el8.noarch                5/39 
  Installing       : perl-Time-Local-1:1.280-1.el8.noarch                  6/39 
  Installing       : perl-Term-ANSIColor-4.06-396.el8.noarch               7/39 
  Installing       : perl-Term-Cap-1.17-395.el8.noarch                     8/39 
  Installing       : perl-HTTP-Tiny-0.074-1.el8.noarch                     9/39 
  Installing       : perl-Pod-Simple-1:3.35-395.el8.noarch                10/39 
  Installing       : perl-File-Temp-0.230.600-1.el8.noarch                11/39 
  Installing       : perl-podlators-4.11-1.el8.noarch                     12/39 
  Installing       : perl-Pod-Perldoc-3.28-396.el8.noarch                 13/39 
  Installing       : perl-Text-ParseWords-3.30-395.el8.noarch             14/39 
  Installing       : perl-Pod-Usage-4:1.69-395.el8.noarch                 15/39 
  Installing       : perl-MIME-Base64-3.15-396.el8.x86_64                 16/39 
  Installing       : perl-Storable-1:3.11-3.el8.x86_64                    17/39 
  Installing       : perl-Getopt-Long-1:2.50-4.el8.noarch                 18/39 
  Installing       : perl-Socket-4:2.027-3.el8.x86_64                     19/39 
  Installing       : perl-Encode-4:2.97-3.el8.x86_64                      20/39 
  Installing       : perl-Errno-1.28-420.el8.x86_64                       21/39 
  Installing       : perl-parent-1:0.237-1.el8.noarch                     22/39 
  Installing       : perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch         23/39 
  Installing       : perl-Unicode-Normalize-1.25-396.el8.x86_64           24/39 
  Installing       : perl-threads-shared-1.58-2.el8.x86_64                25/39 
  Installing       : perl-threads-1:2.21-2.el8.x86_64                     26/39 
  Installing       : perl-Carp-1.42-396.el8.noarch                        27/39 
  Installing       : perl-Exporter-5.72-396.el8.noarch                    28/39 
  Installing       : perl-libs-4:5.26.3-420.el8.x86_64                    29/39 
  Installing       : perl-Scalar-List-Utils-3:1.49-2.el8.x86_64           30/39 
  Installing       : perl-macros-4:5.26.3-420.el8.x86_64                  31/39 
  Installing       : perl-File-Path-2.15-2.el8.noarch                     32/39 
  Installing       : perl-PathTools-3.74-1.el8.x86_64                     33/39 
  Installing       : perl-constant-1.33-396.el8.noarch                    34/39 
  Installing       : perl-IO-1.38-420.el8.x86_64                          35/39 
  Installing       : perl-interpreter-4:5.26.3-420.el8.x86_64             36/39 
  Installing       : ncurses-devel-6.1-9.20180224.el8.x86_64              37/39 
  Installing       : htslib-devel-1.15.1-1.el8.x86_64                     38/39 
  Installing       : htslib-tools-1.15.1-1.el8.x86_64                     39/39 
  Running scriptlet: htslib-tools-1.15.1-1.el8.x86_64                     39/39 
  Verifying        : htslib-1.15.1-1.el8.x86_64                            1/39 
  Verifying        : htslib-devel-1.15.1-1.el8.x86_64                      2/39 
  Verifying        : htslib-tools-1.15.1-1.el8.x86_64                      3/39 
  Verifying        : perl-Scalar-List-Utils-3:1.49-2.el8.x86_64            4/39 
  Verifying        : perl-PathTools-3.74-1.el8.x86_64                      5/39 
  Verifying        : perl-threads-shared-1.58-2.el8.x86_64                 6/39 
  Verifying        : perl-Encode-4:2.97-3.el8.x86_64                       7/39 
  Verifying        : groff-base-1.22.3-18.el8.x86_64                       8/39 
  Verifying        : perl-Unicode-Normalize-1.25-396.el8.x86_64            9/39 
  Verifying        : perl-MIME-Base64-3.15-396.el8.x86_64                 10/39 
  Verifying        : perl-threads-1:2.21-2.el8.x86_64                     11/39 
  Verifying        : perl-Pod-Simple-1:3.35-395.el8.noarch                12/39 
  Verifying        : perl-Term-ANSIColor-4.06-396.el8.noarch              13/39 
  Verifying        : perl-HTTP-Tiny-0.074-1.el8.noarch                    14/39 
  Verifying        : perl-Pod-Escapes-1:1.07-395.el8.noarch               15/39 
  Verifying        : perl-Pod-Perldoc-3.28-396.el8.noarch                 16/39 
  Verifying        : perl-File-Path-2.15-2.el8.noarch                     17/39 
  Verifying        : perl-parent-1:0.237-1.el8.noarch                     18/39 
  Verifying        : perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch         19/39 
  Verifying        : perl-Getopt-Long-1:2.50-4.el8.noarch                 20/39 
  Verifying        : perl-podlators-4.11-1.el8.noarch                     21/39 
  Verifying        : perl-Time-Local-1:1.280-1.el8.noarch                 22/39 
  Verifying        : perl-Carp-1.42-396.el8.noarch                        23/39 
  Verifying        : perl-Exporter-5.72-396.el8.noarch                    24/39 
  Verifying        : perl-Storable-1:3.11-3.el8.x86_64                    25/39 
  Verifying        : perl-Text-ParseWords-3.30-395.el8.noarch             26/39 
  Verifying        : perl-File-Temp-0.230.600-1.el8.noarch                27/39 
  Verifying        : perl-constant-1.33-396.el8.noarch                    28/39 
  Verifying        : perl-Term-Cap-1.17-395.el8.noarch                    29/39 
  Verifying        : perl-Pod-Usage-4:1.69-395.el8.noarch                 30/39 
  Verifying        : perl-Socket-4:2.027-3.el8.x86_64                     31/39 
  Verifying        : perl-libs-4:5.26.3-420.el8.x86_64                    32/39 
  Verifying        : perl-IO-1.38-420.el8.x86_64                          33/39 
  Verifying        : ncurses-devel-6.1-9.20180224.el8.x86_64              34/39 
  Verifying        : perl-interpreter-4:5.26.3-420.el8.x86_64             35/39 
  Verifying        : ncurses-c++-libs-6.1-9.20180224.el8.x86_64           36/39 
  Verifying        : perl-macros-4:5.26.3-420.el8.x86_64                  37/39 
  Verifying        : perl-Errno-1.28-420.el8.x86_64                       38/39 
  Verifying        : zlib-devel-1.2.11-18.el8_5.x86_64                    39/39 
Installed products updated.

Installed:
  groff-base-1.22.3-18.el8.x86_64                                               
  htslib-1.15.1-1.el8.x86_64                                                    
  htslib-devel-1.15.1-1.el8.x86_64                                              
  htslib-tools-1.15.1-1.el8.x86_64                                              
  ncurses-c++-libs-6.1-9.20180224.el8.x86_64                                    
  ncurses-devel-6.1-9.20180224.el8.x86_64                                       
  perl-Carp-1.42-396.el8.noarch                                                 
  perl-Encode-4:2.97-3.el8.x86_64                                               
  perl-Errno-1.28-420.el8.x86_64                                                
  perl-Exporter-5.72-396.el8.noarch                                             
  perl-File-Path-2.15-2.el8.noarch                                              
  perl-File-Temp-0.230.600-1.el8.noarch                                         
  perl-Getopt-Long-1:2.50-4.el8.noarch                                          
  perl-HTTP-Tiny-0.074-1.el8.noarch                                             
  perl-IO-1.38-420.el8.x86_64                                                   
  perl-MIME-Base64-3.15-396.el8.x86_64                                          
  perl-PathTools-3.74-1.el8.x86_64                                              
  perl-Pod-Escapes-1:1.07-395.el8.noarch                                        
  perl-Pod-Perldoc-3.28-396.el8.noarch                                          
  perl-Pod-Simple-1:3.35-395.el8.noarch                                         
  perl-Pod-Usage-4:1.69-395.el8.noarch                                          
  perl-Scalar-List-Utils-3:1.49-2.el8.x86_64                                    
  perl-Socket-4:2.027-3.el8.x86_64                                              
  perl-Storable-1:3.11-3.el8.x86_64                                             
  perl-Term-ANSIColor-4.06-396.el8.noarch                                       
  perl-Term-Cap-1.17-395.el8.noarch                                             
  perl-Text-ParseWords-3.30-395.el8.noarch                                      
  perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch                                  
  perl-Time-Local-1:1.280-1.el8.noarch                                          
  perl-Unicode-Normalize-1.25-396.el8.x86_64                                    
  perl-constant-1.33-396.el8.noarch                                             
  perl-interpreter-4:5.26.3-420.el8.x86_64                                      
  perl-libs-4:5.26.3-420.el8.x86_64                                             
  perl-macros-4:5.26.3-420.el8.x86_64                                           
  perl-parent-1:0.237-1.el8.noarch                                              
  perl-podlators-4.11-1.el8.noarch                                              
  perl-threads-1:2.21-2.el8.x86_64                                              
  perl-threads-shared-1.58-2.el8.x86_64                                         
  zlib-devel-1.2.11-18.el8_5.x86_64                                             

Complete!
Finish: build setup for samtools-1.15.1-3.el8.src.rpm
Start: rpmbuild samtools-1.15.1-3.el8.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.XLnRlx
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1
+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/samtools-1.15.1.tar.bz2
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.15.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LoBDAt
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for x86_64-redhat-linux-gnu-gcc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j2
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.F4Qjct
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64
++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64
+ cd samtools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/man/man1
+ rm -f /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/varfilter.py
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/zoom2sam.pl
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.15.1-3.el8 --unique-debug-suffix -1.15.1-3.el8.x86_64 --unique-debug-src-base samtools-1.15.1-3.el8.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/ace2sam
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/maq2sam-long
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/maq2sam-short
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/md5fa
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/md5sum-lite
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/samtools
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/bin/wgsim
/usr/lib/rpm/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
2442 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile '' 1
+ /usr/lib/rpm/brp-python-hardlink
+ PYTHON3=/usr/libexec/platform-python
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.lJ2C8v
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ ldd samtools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007f765ff25000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
bgzip -c -b 65272 -s 5 /tmp/7Dajac3mff/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/7Dajac3mff/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/7Dajac3mff/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/7Dajac3mff/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/7Dajac3mff/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/7Dajac3mff/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/7Dajac3mff/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/7Dajac3mff/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/7Dajac3mff/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/7Dajac3mff/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/7Dajac3mff/auto_indexed.csi && cat /tmp/7Dajac3mff/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/7Dajac3mff/auto_indexed.crai && cat /tmp/7Dajac3mff/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/7Dajac3mff/auto_indexed.csi && cat /tmp/7Dajac3mff/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/7Dajac3mff/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/7Dajac3mff/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/7Dajac3mff/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/7Dajac3mff/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/7Dajac3mff/auto_indexed.csi && cat /tmp/7Dajac3mff/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/7Dajac3mff/auto_indexed.crai && cat /tmp/7Dajac3mff/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/7Dajac3mff/auto_indexed.csi && cat /tmp/7Dajac3mff/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/7Dajac3mff/mpileup.bam.list -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/7Dajac3mff/mpileup.cram.list -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/7Dajac3mff/mpileup.bam.urllist -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/7Dajac3mff/mpileup.cram.urllist -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:1050-1060 /tmp/7Dajac3mff/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/7Dajac3mff/mpileup.ref.fa.gz -r17:1050-1060 /tmp/7Dajac3mff/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/7Dajac3mff/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/7Dajac3mff/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/7Dajac3mff/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/7Dajac3mff/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/7Dajac3mff/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/7Dajac3mff/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/7Dajac3mff/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/7Dajac3mff/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/7Dajac3mff/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/7Dajac3mff/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/7Dajac3mff/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/7Dajac3mff/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/7Dajac3mff/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/7Dajac3mff/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/7Dajac3mff/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/7Dajac3mff/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/7Dajac3mff/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/7Dajac3mff/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/7Dajac3mff/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/7Dajac3mff/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/7Dajac3mff/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/7Dajac3mff/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/7Dajac3mff/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/7Dajac3mff/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/7Dajac3mff/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test115.sam -h -d TGCA /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test117.sam -h -d TGCA /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test119.sam -h -d TGCA /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/7Dajac3mff/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test121.sam -h -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/7Dajac3mff/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/7Dajac3mff/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test123.sam -h -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/7Dajac3mff/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/7Dajac3mff/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test125.sam -h -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/7Dajac3mff/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/7Dajac3mff/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/7Dajac3mff/view.001.fobc /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/7Dajac3mff/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/7Dajac3mff/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	402: Make BAM with no M5/UR tags                            .. ok

	403: Add @SQ with -t (SAM -> SAM)                           .. ok

	404: Add @SQ with -T (SAM -> SAM)                           .. ok

	405: Add @SQ with -t (BAM -> SAM)                           .. ok

	406: Add @SQ with -T (BAM -> SAM)                           .. ok

	407: Add @SQ with -t (SAM -> BAM)                           .. ok

	408: Add @SQ with -T (SAM -> BAM)                           .. ok

	409: Add @SQ with -t (BAM -> BAM)                           .. ok

	410: Add @SQ with -T (BAM -> BAM)                           .. ok

	411: Add @SQ with -t (SAM -> CRAM)                          .. ok

	412: Add @SQ with -T (SAM -> CRAM)                          .. ok

	413: Add @SQ with -t (BAM -> CRAM)                          .. ok

	414: Add @SQ with -T (BAM -> CRAM)                          .. ok

	415: Make CRAM with no UR field                             .. ok

	416: Decoding CRAM with no UR field via -T                  .. ok

	417: CIGAR B-operator removal                               .. ok

	418: Big SAM -> BAM                                         .. ok

	419: Big SAM -> BAM (2 threads)                             .. ok

	420: Big SAM -> BAM (4 threads)                             .. ok

	421: Big SAM -> CRAM                                        .. ok

	422: Big SAM -> CRAM (2 threads)                            .. ok

	423: Big SAM -> CRAM (4 threads)                            .. ok

	424: Subsample 0.2 (SAM input) ............ ok

	425: Subsample 0.5 (SAM input) ............ ok

	426: Subsample 0.8 (SAM input) ............ ok

	427: Subsample 0.2 (BAM input) ............ ok

	428: Subsample 0.5 (BAM input) ............ ok

	429: Subsample 0.8 (BAM input) ............ ok

	430: Subsample 0.2 (CRAM input) ............ ok

	431: Subsample 0.5 (CRAM input) ............ ok

	432: Subsample 0.8 (CRAM input) ............ ok

	433: SAM add PG                                             .. ok

	434: Unset dup flag, remove dt and do tags                  .. ok

	435: Unmap dup flagged reads.                               .. ok

	436: Unmap dup flagged reads.                               .. ok

	437: fetch pairs                                            .. ok

	438: fetch pairs                                            .. ok

	439: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat BAM files to stdout                                  .. ok

	5: cat recompressed BAM files to stdout                     .. ok

	6: cat CRAM files to stdout                                 .. ok

	7: cat BAM files with new header                            .. ok

	8: cat recompressed BAM files with new header               .. ok

	9: cat CRAM files with new header                           .. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -s /tmp/7Dajac3mff/bam2fq.discard.s.fq -0 /tmp/7Dajac3mff/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/7Dajac3mff/bam2fq.discard.s.fq -0 /tmp/7Dajac3mff/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/89IK4N5EkD - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/7Dajac3mff/merge.tag.1.bam /tmp/7Dajac3mff/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/7Dajac3mff/merge.tag.3.bam /tmp/7Dajac3mff/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/7Dajac3mff/merge.bed.1.bam /tmp/7Dajac3mff/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/JloQCgd3zU - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/7Dajac3mff/merge.tag.1.bam /tmp/7Dajac3mff/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/7Dajac3mff/merge.tag.3.bam /tmp/7Dajac3mff/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/7Dajac3mff/merge.bed.1.bam /tmp/7Dajac3mff/merge.bed.2.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/7Dajac3mff/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/7Dajac3mff/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/7Dajac3mff/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/7Dajac3mff/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/7Dajac3mff/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line'
.. ok


Number of tests:
    total            .. 807
    passed           .. 776
    failed           .. 0
    expected failure .. 31
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   118
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   47
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   62
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
Processing files: samtools-1.15.1-3.el8.x86_64
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xUzKWt
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ cp -pr NEWS /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ cp -pr examples/ /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/doc/samtools
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.1unmtx
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/licenses/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/licenses/samtools
+ cp -pr LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64/usr/share/licenses/samtools
+ exit 0
Provides: samtools = 1.15.1-3.el8 samtools(x86-64) = 1.15.1-3.el8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libncursesw.so.6()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.15.1-3.el8.x86_64
Provides: samtools-debugsource = 1.15.1-3.el8 samtools-debugsource(x86-64) = 1.15.1-3.el8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.15.1-3.el8.x86_64
Provides: debuginfo(build-id) = 0ae116bed255b362385b3082323401154d56c5a5 debuginfo(build-id) = 33e6d2183218a97550a3bb700dc0b4b42b36112d debuginfo(build-id) = 5d72e5e3513cfbea02af2c1afa701b92e705dbaf debuginfo(build-id) = b659bbed53880936a8caa8c6d38ad30ebc1cd84b debuginfo(build-id) = e2683028f66f1729b44dc44f163fb1fa82b6f895 debuginfo(build-id) = e8d945a768e71623f67895ddb1598fe013953544 debuginfo(build-id) = ea0358d5acc02d8e47fb86d6abf0382af82dd079 samtools-debuginfo = 1.15.1-3.el8 samtools-debuginfo(x86-64) = 1.15.1-3.el8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(x86-64) = 1.15.1-3.el8
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64
Wrote: /builddir/build/RPMS/samtools-1.15.1-3.el8.x86_64.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-3.el8.x86_64.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-3.el8.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.NQ4zRw
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.el8.x86_64
+ exit 0
Finish: rpmbuild samtools-1.15.1-3.el8.src.rpm
Finish: build phase for samtools-1.15.1-3.el8.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-8-x86_64-1651772144.097929/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el8.src.rpm) Config(child) 1 minutes 8 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool