Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14e' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5280116 --chroot epel-9-x86_64 --detached
Version: 0.62
PID: 16343
Logging PID: 16344
Task:
{'appstream': True,
 'background': False,
 'build_id': 5280116,
 'buildroot_pkgs': [],
 'chroot': 'epel-9-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ed3ca7dbf352ea585e903e88820572fffde48c11',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el9-collection/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.15.1-3.el8',
 'project_dirname': 'el9-collection',
 'project_name': 'el9-collection',
 'project_owner': 'aminasyan',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/aminasyan/el9-collection/epel-9-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/aminasyan/el9-collection/epel-9-x86_64/',
            'id': 'copr_aminasyan_el9_collection',
            'name': 'Additional repo copr_aminasyan_el9_collection'},
           {'baseurl': 'http://mirror.stream.centos.org/SIGs/9-stream/virt/$basearch/ovirt-45',
            'id': 'http_mirror_stream_centos_org_SIGs_9_stream_virt_basearch_ovirt_45',
            'name': 'Additional repo http_mirror_stream_centos_org_SIGs_9_stream_virt_basearch_ovirt_45'}],
 'sandbox': 'aminasyan/el9-collection--aminasyan',
 'source_json': {},
 'source_type': None,
 'submitter': 'aminasyan',
 'tags': [],
 'task_id': '5280116-epel-9-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el9-collection/samtools /var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/aminasyan/el9-collection/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools'...

Running: git checkout ed3ca7dbf352ea585e903e88820572fffde48c11

cmd: ['git', 'checkout', 'ed3ca7dbf352ea585e903e88820572fffde48c11']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools
rc: 0
stdout: 
stderr: Note: switching to 'ed3ca7dbf352ea585e903e88820572fffde48c11'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ed3ca7d automatic import of samtools

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.15.1.tar.bz2
INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/aminasyan/el9-collection/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7648k  100 7648k    0     0  17.2M      0 --:--:-- --:--:-- --:--:-- 17.3M
INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674274465.014553 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools/samtools.spec)  Config(rhel+epel-9-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1674274465.014553/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
Copr repository                                 2.5 MB/s | 595 kB     00:00    
Additional repo copr_aminasyan_el9_collection   3.1 MB/s | 595 kB     00:00    
Additional repo http_mirror_stream_centos_org_S 1.1 MB/s | 856 kB     00:00    
Red Hat Enterprise Linux - BaseOS               4.2 MB/s | 6.9 MB     00:01    
Red Hat Enterprise Linux - AppStream             15 MB/s |  15 MB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil 5.3 MB/s | 4.3 MB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  6.2 MB/s |  13 MB     00:02    
Dependencies resolved.
=========================================================================================
 Package                                  Arch    Version                   Repo     Size
=========================================================================================
Installing:
 dnf                                      noarch  4.12.0-4.el9              baseos  468 k
 dnf-plugins-core                         noarch  4.1.0-3.el9               baseos   38 k
 subscription-manager                     x86_64  1.29.30-1.el9             baseos  903 k
Installing dependencies:
 acl                                      x86_64  2.3.1-3.el9               baseos   77 k
 alternatives                             x86_64  1.20-2.el9                baseos   40 k
 audit-libs                               x86_64  3.0.7-103.el9             baseos  121 k
 basesystem                               noarch  11-13.el9                 baseos  8.0 k
 bash                                     x86_64  5.1.8-5.el9               baseos  1.7 M
 bzip2-libs                               x86_64  1.0.8-8.el9               baseos   42 k
 ca-certificates                          noarch  2022.2.54-90.2.el9_0      baseos  835 k
 coreutils                                x86_64  8.32-32.el9               baseos  1.2 M
 coreutils-common                         x86_64  8.32-32.el9               baseos  2.0 M
 cracklib                                 x86_64  2.9.6-27.el9              baseos   99 k
 cracklib-dicts                           x86_64  2.9.6-27.el9              baseos  3.6 M
 crypto-policies                          noarch  20220815-1.git0fbe86f.el9 baseos   85 k
 cryptsetup-libs                          x86_64  2.4.3-5.el9               baseos  441 k
 curl                                     x86_64  7.76.1-19.el9             baseos  300 k
 cyrus-sasl-lib                           x86_64  2.1.27-20.el9             baseos  774 k
 dbus                                     x86_64  1:1.12.20-6.el9           baseos  7.9 k
 dbus-broker                              x86_64  28-7.el9                  baseos  175 k
 dbus-common                              noarch  1:1.12.20-6.el9           baseos   18 k
 dbus-libs                                x86_64  1:1.12.20-6.el9           baseos  154 k
 device-mapper                            x86_64  9:1.02.185-3.el9          baseos  145 k
 device-mapper-libs                       x86_64  9:1.02.185-3.el9          baseos  180 k
 dmidecode                                x86_64  1:3.3-7.el9               baseos   93 k
 dnf-data                                 noarch  4.12.0-4.el9              baseos   48 k
 elfutils-default-yama-scope              noarch  0.187-5.el9               baseos   16 k
 elfutils-libelf                          x86_64  0.187-5.el9               baseos  199 k
 elfutils-libs                            x86_64  0.187-5.el9               baseos  257 k
 expat                                    x86_64  2.4.9-1.el9_1             baseos  120 k
 file-libs                                x86_64  5.39-10.el9               baseos  592 k
 filesystem                               x86_64  3.16-2.el9                baseos  4.7 M
 gawk                                     x86_64  5.1.0-6.el9               baseos  1.0 M
 gdbm-libs                                x86_64  1:1.19-4.el9              baseos   56 k
 glib2                                    x86_64  2.68.4-5.el9              baseos  2.7 M
 glibc                                    x86_64  2.34-40.el9               baseos  1.9 M
 glibc-common                             x86_64  2.34-40.el9               baseos  313 k
 glibc-minimal-langpack                   x86_64  2.34-40.el9               baseos   29 k
 gmp                                      x86_64  1:6.2.0-10.el9            baseos  320 k
 gnupg2                                   x86_64  2.3.3-2.el9_0             baseos  2.5 M
 gnutls                                   x86_64  3.7.6-12.el9_0            baseos  1.0 M
 gobject-introspection                    x86_64  1.68.0-10.el9             baseos  254 k
 gpgme                                    x86_64  1.15.1-6.el9              baseos  211 k
 grep                                     x86_64  3.6-5.el9                 baseos  273 k
 gzip                                     x86_64  1.12-1.el9                baseos  167 k
 ima-evm-utils                            x86_64  1.4-4.el9                 baseos   67 k
 json-c                                   x86_64  0.14-11.el9               baseos   45 k
 json-glib                                x86_64  1.6.6-1.el9               baseos  167 k
 keyutils-libs                            x86_64  1.6.1-4.el9               baseos   34 k
 kmod-libs                                x86_64  28-7.el9                  baseos   66 k
 krb5-libs                                x86_64  1.19.1-24.el9_1           baseos  733 k
 libacl                                   x86_64  2.3.1-3.el9               baseos   26 k
 libarchive                               x86_64  3.5.3-3.el9               baseos  392 k
 libassuan                                x86_64  2.5.5-3.el9               baseos   71 k
 libattr                                  x86_64  2.5.1-3.el9               baseos   20 k
 libblkid                                 x86_64  2.37.4-9.el9              baseos  110 k
 libbrotli                                x86_64  1.0.9-6.el9               baseos  317 k
 libcap                                   x86_64  2.48-8.el9                baseos   76 k
 libcap-ng                                x86_64  0.8.2-7.el9               baseos   36 k
 libcom_err                               x86_64  1.46.5-3.el9              baseos   29 k
 libcomps                                 x86_64  0.1.18-1.el9              baseos   80 k
 libcurl                                  x86_64  7.76.1-19.el9             baseos  289 k
 libdb                                    x86_64  5.3.28-53.el9             baseos  740 k
 libdnf                                   x86_64  0.67.0-3.el9              baseos  667 k
 libdnf-plugin-subscription-manager       x86_64  1.29.30-1.el9             baseos   85 k
 libeconf                                 x86_64  0.4.1-2.el9               baseos   31 k
 libevent                                 x86_64  2.1.12-6.el9              baseos  268 k
 libfdisk                                 x86_64  2.37.4-9.el9              baseos  156 k
 libffi                                   x86_64  3.4.2-7.el9               baseos   40 k
 libgcc                                   x86_64  11.3.1-2.1.el9            baseos  119 k
 libgcrypt                                x86_64  1.10.0-8.el9_0            baseos  513 k
 libgomp                                  x86_64  11.3.1-2.1.el9            baseos  294 k
 libgpg-error                             x86_64  1.42-5.el9                baseos  220 k
 libidn2                                  x86_64  2.3.0-7.el9               baseos  105 k
 libksba                                  x86_64  1.5.1-5.el9_0             baseos  158 k
 libmodulemd                              x86_64  2.13.0-2.el9              baseos  236 k
 libmount                                 x86_64  2.37.4-9.el9              baseos  136 k
 libnghttp2                               x86_64  1.43.0-5.el9              baseos   76 k
 libnl3                                   x86_64  3.7.0-1.el9               baseos  354 k
 libpsl                                   x86_64  0.21.1-5.el9              baseos   66 k
 libpwquality                             x86_64  1.4.4-8.el9               baseos  123 k
 librepo                                  x86_64  1.14.2-3.el9              baseos   91 k
 libreport-filesystem                     noarch  2.15.2-6.el9              baseos   15 k
 librhsm                                  x86_64  0.0.3-7.el9               baseos   37 k
 libseccomp                               x86_64  2.5.2-2.el9               baseos   74 k
 libselinux                               x86_64  3.4-3.el9                 baseos   88 k
 libsemanage                              x86_64  3.4-2.el9                 baseos  121 k
 libsepol                                 x86_64  3.4-1.1.el9               baseos  317 k
 libsigsegv                               x86_64  2.13-4.el9                baseos   30 k
 libsmartcols                             x86_64  2.37.4-9.el9              baseos   66 k
 libsolv                                  x86_64  0.7.22-1.el9              baseos  395 k
 libssh                                   x86_64  0.9.6-3.el9               baseos  210 k
 libssh-config                            noarch  0.9.6-3.el9               baseos   11 k
 libstdc++                                x86_64  11.3.1-2.1.el9            baseos  766 k
 libtasn1                                 x86_64  4.16.0-7.el9              baseos   78 k
 libunistring                             x86_64  0.9.10-15.el9             baseos  499 k
 libuser                                  x86_64  0.63-11.el9               baseos  410 k
 libutempter                              x86_64  1.2.1-6.el9               baseos   30 k
 libuuid                                  x86_64  2.37.4-9.el9              baseos   30 k
 libverto                                 x86_64  0.3.2-3.el9               baseos   24 k
 libxcrypt                                x86_64  4.4.18-3.el9              baseos  120 k
 libxml2                                  x86_64  2.9.13-2.el9              baseos  752 k
 libyaml                                  x86_64  0.2.5-7.el9               baseos   63 k
 libzstd                                  x86_64  1.5.1-2.el9               baseos  332 k
 lua-libs                                 x86_64  5.4.2-4.el9_0.3           baseos  214 k
 lz4-libs                                 x86_64  1.9.3-5.el9               baseos   69 k
 mpfr                                     x86_64  4.1.0-7.el9               baseos  329 k
 ncurses-base                             noarch  6.2-8.20210508.el9        baseos  100 k
 ncurses-libs                             x86_64  6.2-8.20210508.el9        baseos  334 k
 nettle                                   x86_64  3.8-3.el9_0               baseos  552 k
 npth                                     x86_64  1.6-8.el9                 baseos   27 k
 openldap                                 x86_64  2.6.2-3.el9               baseos  287 k
 openldap-compat                          x86_64  2.6.2-3.el9               baseos   21 k
 openssl                                  x86_64  1:3.0.1-43.el9_0          baseos  1.2 M
 openssl-libs                             x86_64  1:3.0.1-43.el9_0          baseos  2.1 M
 p11-kit                                  x86_64  0.24.1-2.el9              baseos  387 k
 p11-kit-trust                            x86_64  0.24.1-2.el9              baseos  148 k
 pam                                      x86_64  1.5.1-12.el9              baseos  625 k
 passwd                                   x86_64  0.80-12.el9               baseos  126 k
 pcre                                     x86_64  8.44-3.el9.3              baseos  202 k
 pcre2                                    x86_64  10.40-2.el9               baseos  239 k
 pcre2-syntax                             noarch  10.40-2.el9               baseos  147 k
 popt                                     x86_64  1.18-8.el9                baseos   69 k
 publicsuffix-list-dafsa                  noarch  20210518-3.el9            baseos   59 k
 python3                                  x86_64  3.9.14-1.el9_1.1          baseos   31 k
 python3-chardet                          noarch  4.0.0-5.el9               baseos  243 k
 python3-cloud-what                       x86_64  1.29.30-1.el9             baseos  101 k
 python3-dateutil                         noarch  1:2.8.1-6.el9             baseos  306 k
 python3-dbus                             x86_64  1.2.18-2.el9              baseos  148 k
 python3-decorator                        noarch  4.4.2-6.el9               baseos   31 k
 python3-dnf                              noarch  4.12.0-4.el9              baseos  470 k
 python3-dnf-plugins-core                 noarch  4.1.0-3.el9               baseos  241 k
 python3-ethtool                          x86_64  0.15-2.el9                baseos   45 k
 python3-gobject-base                     x86_64  3.40.1-6.el9              baseos  187 k
 python3-gobject-base-noarch              noarch  3.40.1-6.el9              baseos  165 k
 python3-gpg                              x86_64  1.15.1-6.el9              baseos  285 k
 python3-hawkey                           x86_64  0.67.0-3.el9              baseos  111 k
 python3-idna                             noarch  2.10-7.el9                baseos  101 k
 python3-iniparse                         noarch  0.4-45.el9                baseos   51 k
 python3-inotify                          noarch  0.9.6-25.el9              baseos   56 k
 python3-libcomps                         x86_64  0.1.18-1.el9              baseos   52 k
 python3-libdnf                           x86_64  0.67.0-3.el9              baseos  788 k
 python3-librepo                          x86_64  1.14.2-3.el9              baseos   52 k
 python3-libs                             x86_64  3.9.14-1.el9_1.1          baseos  7.8 M
 python3-pip-wheel                        noarch  21.2.3-6.el9              baseos  1.1 M
 python3-pysocks                          noarch  1.7.1-12.el9              baseos   38 k
 python3-requests                         noarch  2.25.1-6.el9              baseos  130 k
 python3-rpm                              x86_64  4.16.1.3-19.el9_1         baseos   93 k
 python3-setuptools                       noarch  53.0.0-10.el9             baseos  950 k
 python3-setuptools-wheel                 noarch  53.0.0-10.el9             baseos  472 k
 python3-six                              noarch  1.15.0-9.el9              baseos   40 k
 python3-subscription-manager-rhsm        x86_64  1.29.30-1.el9             baseos  180 k
 python3-urllib3                          noarch  1.26.5-3.el9              baseos  220 k
 readline                                 x86_64  8.1-4.el9                 baseos  215 k
 redhat-release                           x86_64  9.1-1.9.el9               baseos   46 k
 rpm                                      x86_64  4.16.1.3-19.el9_1         baseos  542 k
 rpm-build-libs                           x86_64  4.16.1.3-19.el9_1         baseos   92 k
 rpm-libs                                 x86_64  4.16.1.3-19.el9_1         baseos  309 k
 rpm-sign-libs                            x86_64  4.16.1.3-19.el9_1         baseos   23 k
 sed                                      x86_64  4.8-9.el9                 baseos  309 k
 setup                                    noarch  2.13.7-7.el9              baseos  150 k
 shadow-utils                             x86_64  2:4.9-5.el9               baseos  1.2 M
 sqlite-libs                              x86_64  3.34.1-5.el9              baseos  623 k
 subscription-manager-rhsm-certificates   noarch  20220623-1.el9            baseos   22 k
 systemd                                  x86_64  250-12.el9_1              baseos  4.2 M
 systemd-libs                             x86_64  250-12.el9_1              baseos  638 k
 systemd-pam                              x86_64  250-12.el9_1              baseos  259 k
 systemd-rpm-macros                       noarch  250-12.el9_1              baseos   44 k
 tpm2-tss                                 x86_64  3.0.3-8.el9               baseos  580 k
 tzdata                                   noarch  2022g-1.el9_1             baseos  839 k
 usermode                                 x86_64  1.114-4.el9               baseos  194 k
 util-linux                               x86_64  2.37.4-9.el9              baseos  2.3 M
 util-linux-core                          x86_64  2.37.4-9.el9              baseos  465 k
 virt-what                                x86_64  1.25-1.el9                baseos   35 k
 which                                    x86_64  2.21-28.el9               baseos   45 k
 xz-libs                                  x86_64  5.2.5-8.el9_0             baseos   94 k
 zlib                                     x86_64  1.2.11-34.el9             baseos   93 k

Transaction Summary
=========================================================================================
Install  177 Packages

Total download size: 76 M
Installed size: 238 M
Downloading Packages:
(1/177): libseccomp-2.5.2-2.el9.x86_64.rpm      172 kB/s |  74 kB     00:00    
(2/177): libpwquality-1.4.4-8.el9.x86_64.rpm    283 kB/s | 123 kB     00:00    
(3/177): json-glib-1.6.6-1.el9.x86_64.rpm       364 kB/s | 167 kB     00:00    
(4/177): libutempter-1.2.1-6.el9.x86_64.rpm     308 kB/s |  30 kB     00:00    
(5/177): python3-ethtool-0.15-2.el9.x86_64.rpm  417 kB/s |  45 kB     00:00    
(6/177): libmodulemd-2.13.0-2.el9.x86_64.rpm    1.3 MB/s | 236 kB     00:00    
(7/177): python3-iniparse-0.4-45.el9.noarch.rpm 484 kB/s |  51 kB     00:00    
(8/177): python3-setuptools-53.0.0-10.el9.noarc 3.8 MB/s | 950 kB     00:00    
(9/177): lz4-libs-1.9.3-5.el9.x86_64.rpm        303 kB/s |  69 kB     00:00    
(10/177): libassuan-2.5.5-3.el9.x86_64.rpm      340 kB/s |  71 kB     00:00    
(11/177): python3-decorator-4.4.2-6.el9.noarch. 291 kB/s |  31 kB     00:00    
(12/177): libcap-2.48-8.el9.x86_64.rpm          715 kB/s |  76 kB     00:00    
(13/177): npth-1.6-8.el9.x86_64.rpm             254 kB/s |  27 kB     00:00    
(14/177): python3-urllib3-1.26.5-3.el9.noarch.r 1.7 MB/s | 220 kB     00:00    
(15/177): libacl-2.3.1-3.el9.x86_64.rpm         169 kB/s |  26 kB     00:00    
(16/177): cyrus-sasl-lib-2.1.27-20.el9.x86_64.r 3.5 MB/s | 774 kB     00:00    
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(22/177): kmod-libs-28-7.el9.x86_64.rpm         522 kB/s |  66 kB     00:00    
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(24/177): python3-dbus-1.2.18-2.el9.x86_64.rpm  917 kB/s | 148 kB     00:00    
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(28/177): pcre-8.44-3.el9.3.x86_64.rpm          879 kB/s | 202 kB     00:00    
(29/177): python3-idna-2.10-7.el9.noarch.rpm    1.0 MB/s | 101 kB     00:00    
(30/177): libreport-filesystem-2.15.2-6.el9.noa 158 kB/s |  15 kB     00:00    
(31/177): sed-4.8-9.el9.x86_64.rpm              2.0 MB/s | 309 kB     00:00    
(32/177): ncurses-libs-6.2-8.20210508.el9.x86_6 3.2 MB/s | 334 kB     00:00    
(33/177): libcomps-0.1.18-1.el9.x86_64.rpm      809 kB/s |  80 kB     00:00    
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(36/177): libunistring-0.9.10-15.el9.x86_64.rpm 2.6 MB/s | 499 kB     00:00    
(37/177): basesystem-11-13.el9.noarch.rpm        56 kB/s | 8.0 kB     00:00    
(38/177): libssh-config-0.9.6-3.el9.noarch.rpm   92 kB/s |  11 kB     00:00    
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(49/177): readline-8.1-4.el9.x86_64.rpm         1.6 MB/s | 215 kB     00:00    
(50/177): libidn2-2.3.0-7.el9.x86_64.rpm        780 kB/s | 105 kB     00:00    
(51/177): cracklib-2.9.6-27.el9.x86_64.rpm      683 kB/s |  99 kB     00:00    
(52/177): gpgme-1.15.1-6.el9.x86_64.rpm         1.3 MB/s | 211 kB     00:00    
(53/177): passwd-0.80-12.el9.x86_64.rpm         1.2 MB/s | 126 kB     00:00    
(54/177): libevent-2.1.12-6.el9.x86_64.rpm      2.2 MB/s | 268 kB     00:00    
(55/177): python3-requests-2.25.1-6.el9.noarch. 945 kB/s | 130 kB     00:00    
(56/177): sqlite-libs-3.34.1-5.el9.x86_64.rpm   4.7 MB/s | 623 kB     00:00    
(57/177): libgpg-error-1.42-5.el9.x86_64.rpm    1.6 MB/s | 220 kB     00:00    
(58/177): libffi-3.4.2-7.el9.x86_64.rpm         311 kB/s |  40 kB     00:00    
(59/177): libzstd-1.5.1-2.el9.x86_64.rpm        2.5 MB/s | 332 kB     00:00    
(60/177): p11-kit-0.24.1-2.el9.x86_64.rpm       2.7 MB/s | 387 kB     00:00    
(61/177): python3-chardet-4.0.0-5.el9.noarch.rp 1.1 MB/s | 243 kB     00:00    
(62/177): libpsl-0.21.1-5.el9.x86_64.rpm        296 kB/s |  66 kB     00:00    
(63/177): python3-pysocks-1.7.1-12.el9.noarch.r 368 kB/s |  38 kB     00:00    
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(65/177): glib2-2.68.4-5.el9.x86_64.rpm         7.9 MB/s | 2.7 MB     00:00    
(66/177): publicsuffix-list-dafsa-20210518-3.el 564 kB/s |  59 kB     00:00    
(67/177): dmidecode-3.3-7.el9.x86_64.rpm        791 kB/s |  93 kB     00:00    
(68/177): libdb-5.3.28-53.el9.x86_64.rpm        3.7 MB/s | 740 kB     00:00    
(69/177): gmp-6.2.0-10.el9.x86_64.rpm           2.2 MB/s | 320 kB     00:00    
(70/177): libeconf-0.4.1-2.el9.x86_64.rpm       245 kB/s |  31 kB     00:00    
(71/177): libsigsegv-2.13-4.el9.x86_64.rpm      241 kB/s |  30 kB     00:00    
(72/177): alternatives-1.20-2.el9.x86_64.rpm    350 kB/s |  40 kB     00:00    
(73/177): libattr-2.5.1-3.el9.x86_64.rpm        191 kB/s |  20 kB     00:00    
(74/177): ima-evm-utils-1.4-4.el9.x86_64.rpm    580 kB/s |  67 kB     00:00    
(75/177): python3-setuptools-wheel-53.0.0-10.el 4.0 MB/s | 472 kB     00:00    
(76/177): bzip2-libs-1.0.8-8.el9.x86_64.rpm     348 kB/s |  42 kB     00:00    
(77/177): coreutils-8.32-32.el9.x86_64.rpm      8.7 MB/s | 1.2 MB     00:00    
(78/177): python3-pip-wheel-21.2.3-6.el9.noarch 6.0 MB/s | 1.1 MB     00:00    
(79/177): gdbm-libs-1.19-4.el9.x86_64.rpm       454 kB/s |  56 kB     00:00    
(80/177): libsmartcols-2.37.4-9.el9.x86_64.rpm  417 kB/s |  66 kB     00:00    
(81/177): ca-certificates-2022.2.54-90.2.el9_0. 4.6 MB/s | 835 kB     00:00    
(82/177): libgcrypt-1.10.0-8.el9_0.x86_64.rpm   3.1 MB/s | 513 kB     00:00    
(83/177): nettle-3.8-3.el9_0.x86_64.rpm         4.9 MB/s | 552 kB     00:00    
(84/177): libgcc-11.3.1-2.1.el9.x86_64.rpm      1.2 MB/s | 119 kB     00:00    
(85/177): gnutls-3.7.6-12.el9_0.x86_64.rpm      9.0 MB/s | 1.0 MB     00:00    
(86/177): dnf-data-4.12.0-4.el9.noarch.rpm      474 kB/s |  48 kB     00:00    
(87/177): python3-dnf-4.12.0-4.el9.noarch.rpm   3.3 MB/s | 470 kB     00:00    
(88/177): cracklib-dicts-2.9.6-27.el9.x86_64.rp  22 MB/s | 3.6 MB     00:00    
(89/177): shadow-utils-4.9-5.el9.x86_64.rpm     9.2 MB/s | 1.2 MB     00:00    
(90/177): glibc-2.34-40.el9.x86_64.rpm           13 MB/s | 1.9 MB     00:00    
(91/177): zlib-1.2.11-34.el9.x86_64.rpm         716 kB/s |  93 kB     00:00    
(92/177): lua-libs-5.4.2-4.el9_0.3.x86_64.rpm   2.0 MB/s | 214 kB     00:00    
(93/177): xz-libs-5.2.5-8.el9_0.x86_64.rpm      986 kB/s |  94 kB     00:00    
(94/177): dnf-plugins-core-4.1.0-3.el9.noarch.r 363 kB/s |  38 kB     00:00    
(95/177): curl-7.76.1-19.el9.x86_64.rpm         2.6 MB/s | 300 kB     00:00    
(96/177): which-2.21-28.el9.x86_64.rpm          467 kB/s |  45 kB     00:00    
(97/177): p11-kit-trust-0.24.1-2.el9.x86_64.rpm 1.4 MB/s | 148 kB     00:00    
(98/177): bash-5.1.8-5.el9.x86_64.rpm            14 MB/s | 1.7 MB     00:00    
(99/177): pcre2-syntax-10.40-2.el9.noarch.rpm   1.5 MB/s | 147 kB     00:00    
(100/177): libfdisk-2.37.4-9.el9.x86_64.rpm     1.5 MB/s | 156 kB     00:00    
(101/177): util-linux-core-2.37.4-9.el9.x86_64. 3.9 MB/s | 465 kB     00:00    
(102/177): libuser-0.63-11.el9.x86_64.rpm       3.6 MB/s | 410 kB     00:00    
(103/177): libgomp-11.3.1-2.1.el9.x86_64.rpm    2.9 MB/s | 294 kB     00:00    
(104/177): openssl-3.0.1-43.el9_0.x86_64.rpm    9.8 MB/s | 1.2 MB     00:00    
(105/177): python3-six-1.15.0-9.el9.noarch.rpm  376 kB/s |  40 kB     00:00    
(106/177): pam-1.5.1-12.el9.x86_64.rpm          5.6 MB/s | 625 kB     00:00    
(107/177): libksba-1.5.1-5.el9_0.x86_64.rpm     1.4 MB/s | 158 kB     00:00    
(108/177): libxml2-2.9.13-2.el9.x86_64.rpm      3.5 MB/s | 752 kB     00:00    
(109/177): python3-dnf-plugins-core-4.1.0-3.el9 1.1 MB/s | 241 kB     00:00    
(110/177): libsolv-0.7.22-1.el9.x86_64.rpm      1.6 MB/s | 395 kB     00:00    
(111/177): gawk-5.1.0-6.el9.x86_64.rpm          5.6 MB/s | 1.0 MB     00:00    
(112/177): openssl-libs-3.0.1-43.el9_0.x86_64.r 9.4 MB/s | 2.1 MB     00:00    
(113/177): libdnf-plugin-subscription-manager-1 585 kB/s |  85 kB     00:00    
(114/177): libnl3-3.7.0-1.el9.x86_64.rpm        3.2 MB/s | 354 kB     00:00    
(115/177): setup-2.13.7-7.el9.noarch.rpm        1.2 MB/s | 150 kB     00:00    
(116/177): gnupg2-2.3.3-2.el9_0.x86_64.rpm       16 MB/s | 2.5 MB     00:00    
(117/177): python3-dateutil-2.8.1-6.el9.noarch. 3.0 MB/s | 306 kB     00:00    
(118/177): libcom_err-1.46.5-3.el9.x86_64.rpm   316 kB/s |  29 kB     00:00    
(119/177): subscription-manager-rhsm-certificat 233 kB/s |  22 kB     00:00    
(120/177): libselinux-3.4-3.el9.x86_64.rpm      868 kB/s |  88 kB     00:00    
(121/177): dbus-libs-1.12.20-6.el9.x86_64.rpm   1.6 MB/s | 154 kB     00:00    
(122/177): dnf-4.12.0-4.el9.noarch.rpm          3.2 MB/s | 468 kB     00:00    
(123/177): glibc-common-2.34-40.el9.x86_64.rpm  3.0 MB/s | 313 kB     00:00    
(124/177): subscription-manager-1.29.30-1.el9.x 7.0 MB/s | 903 kB     00:00    
(125/177): systemd-250-12.el9_1.x86_64.rpm       22 MB/s | 4.2 MB     00:00    
(126/177): pcre2-10.40-2.el9.x86_64.rpm         2.0 MB/s | 239 kB     00:00    
(127/177): glibc-minimal-langpack-2.34-40.el9.x 290 kB/s |  29 kB     00:00    
(128/177): python3-gobject-base-noarch-3.40.1-6 1.6 MB/s | 165 kB     00:00    
(129/177): python3-libdnf-0.67.0-3.el9.x86_64.r 5.1 MB/s | 788 kB     00:00    
(130/177): device-mapper-libs-1.02.185-3.el9.x8 1.6 MB/s | 180 kB     00:00    
(131/177): libmount-2.37.4-9.el9.x86_64.rpm     1.1 MB/s | 136 kB     00:00    
(132/177): libuuid-2.37.4-9.el9.x86_64.rpm      298 kB/s |  30 kB     00:00    
(133/177): redhat-release-9.1-1.9.el9.x86_64.rp 344 kB/s |  46 kB     00:00    
(134/177): file-libs-5.39-10.el9.x86_64.rpm     3.2 MB/s | 592 kB     00:00    
(135/177): openldap-2.6.2-3.el9.x86_64.rpm      1.3 MB/s | 287 kB     00:00    
(136/177): librepo-1.14.2-3.el9.x86_64.rpm      279 kB/s |  91 kB     00:00    
(137/177): audit-libs-3.0.7-103.el9.x86_64.rpm  406 kB/s | 121 kB     00:00    
(138/177): systemd-rpm-macros-250-12.el9_1.noar 164 kB/s |  44 kB     00:00    
(139/177): python3-librepo-1.14.2-3.el9.x86_64. 495 kB/s |  52 kB     00:00    
(140/177): python3-hawkey-0.67.0-3.el9.x86_64.r 710 kB/s | 111 kB     00:00    
(141/177): libsemanage-3.4-2.el9.x86_64.rpm     715 kB/s | 121 kB     00:00    
(142/177): python3-subscription-manager-rhsm-1. 1.2 MB/s | 180 kB     00:00    
(143/177): util-linux-2.37.4-9.el9.x86_64.rpm    14 MB/s | 2.3 MB     00:00    
(144/177): expat-2.4.9-1.el9_1.x86_64.rpm       952 kB/s | 120 kB     00:00    
(145/177): virt-what-1.25-1.el9.x86_64.rpm      283 kB/s |  35 kB     00:00    
(146/177): systemd-libs-250-12.el9_1.x86_64.rpm 4.6 MB/s | 638 kB     00:00    
(147/177): elfutils-default-yama-scope-0.187-5. 164 kB/s |  16 kB     00:00    
(148/177): libcurl-7.76.1-19.el9.x86_64.rpm     2.7 MB/s | 289 kB     00:00    
(149/177): libarchive-3.5.3-3.el9.x86_64.rpm    3.7 MB/s | 392 kB     00:00    
(150/177): elfutils-libelf-0.187-5.el9.x86_64.r 2.0 MB/s | 199 kB     00:00    
(151/177): crypto-policies-20220815-1.git0fbe86 864 kB/s |  85 kB     00:00    
(152/177): libblkid-2.37.4-9.el9.x86_64.rpm     1.1 MB/s | 110 kB     00:00    
(153/177): dbus-1.12.20-6.el9.x86_64.rpm         83 kB/s | 7.9 kB     00:00    
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(155/177): gzip-1.12-1.el9.x86_64.rpm           1.3 MB/s | 167 kB     00:00    
(156/177): openldap-compat-2.6.2-3.el9.x86_64.r 135 kB/s |  21 kB     00:00    
(157/177): elfutils-libs-0.187-5.el9.x86_64.rpm 1.7 MB/s | 257 kB     00:00    
(158/177): dbus-common-1.12.20-6.el9.noarch.rpm 147 kB/s |  18 kB     00:00    
(159/177): python3-cloud-what-1.29.30-1.el9.x86 989 kB/s | 101 kB     00:00    
(160/177): python3-gobject-base-3.40.1-6.el9.x8 1.9 MB/s | 187 kB     00:00    
(161/177): systemd-pam-250-12.el9_1.x86_64.rpm  2.4 MB/s | 259 kB     00:00    
(162/177): cryptsetup-libs-2.4.3-5.el9.x86_64.r 3.7 MB/s | 441 kB     00:00    
(163/177): libstdc++-11.3.1-2.1.el9.x86_64.rpm  6.5 MB/s | 766 kB     00:00    
(164/177): coreutils-common-8.32-32.el9.x86_64.  15 MB/s | 2.0 MB     00:00    
(165/177): device-mapper-1.02.185-3.el9.x86_64. 1.5 MB/s | 145 kB     00:00    
(166/177): tpm2-tss-3.0.3-8.el9.x86_64.rpm      5.3 MB/s | 580 kB     00:00    
(167/177): dbus-broker-28-7.el9.x86_64.rpm      1.7 MB/s | 175 kB     00:00    
(168/177): python3-rpm-4.16.1.3-19.el9_1.x86_64 435 kB/s |  93 kB     00:00    
(169/177): libdnf-0.67.0-3.el9.x86_64.rpm       2.4 MB/s | 667 kB     00:00    
(170/177): rpm-build-libs-4.16.1.3-19.el9_1.x86 472 kB/s |  92 kB     00:00    
(171/177): rpm-sign-libs-4.16.1.3-19.el9_1.x86_ 137 kB/s |  23 kB     00:00    
(172/177): rpm-4.16.1.3-19.el9_1.x86_64.rpm     3.5 MB/s | 542 kB     00:00    
(173/177): rpm-libs-4.16.1.3-19.el9_1.x86_64.rp 1.3 MB/s | 309 kB     00:00    
(174/177): python3-3.9.14-1.el9_1.1.x86_64.rpm  274 kB/s |  31 kB     00:00    
(175/177): krb5-libs-1.19.1-24.el9_1.x86_64.rpm 5.0 MB/s | 733 kB     00:00    
(176/177): tzdata-2022g-1.el9_1.noarch.rpm      5.3 MB/s | 839 kB     00:00    
(177/177): python3-libs-3.9.14-1.el9_1.1.x86_64  28 MB/s | 7.8 MB     00:00    
--------------------------------------------------------------------------------
Total                                           8.8 MB/s |  76 MB     00:08     
Red Hat Enterprise Linux - BaseOS               3.5 MB/s | 3.6 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Importing GPG key 0x5A6340B3:
 Userid     : "Red Hat, Inc. (auxiliary key 3) <security@redhat.com>"
 Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.16-2.el9.x86_64                           1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-11.3.1-2.1.el9.x86_64                         1/177 
  Running scriptlet: libgcc-11.3.1-2.1.el9.x86_64                         1/177 
  Installing       : crypto-policies-20220815-1.git0fbe86f.el9.noarch     2/177 
  Running scriptlet: crypto-policies-20220815-1.git0fbe86f.el9.noarch     2/177 
  Installing       : tzdata-2022g-1.el9_1.noarch                          3/177 
  Installing       : subscription-manager-rhsm-certificates-20220623-     4/177 
  Installing       : coreutils-common-8.32-32.el9.x86_64                  5/177 
  Installing       : redhat-release-9.1-1.9.el9.x86_64                    6/177 
  Installing       : setup-2.13.7-7.el9.noarch                            7/177 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.13.7-7.el9.noarch                            7/177 
  Installing       : filesystem-3.16-2.el9.x86_64                         8/177 
  Installing       : basesystem-11-13.el9.noarch                          9/177 
  Installing       : pcre2-syntax-10.40-2.el9.noarch                     10/177 
  Installing       : python3-setuptools-wheel-53.0.0-10.el9.noarch       11/177 
  Installing       : publicsuffix-list-dafsa-20210518-3.el9.noarch       12/177 
  Installing       : ncurses-base-6.2-8.20210508.el9.noarch              13/177 
  Installing       : ncurses-libs-6.2-8.20210508.el9.x86_64              14/177 
  Running scriptlet: glibc-2.34-40.el9.x86_64                            15/177 
  Installing       : glibc-2.34-40.el9.x86_64                            15/177 
  Running scriptlet: glibc-2.34-40.el9.x86_64                            15/177 
  Installing       : bash-5.1.8-5.el9.x86_64                             16/177 
  Running scriptlet: bash-5.1.8-5.el9.x86_64                             16/177 
  Installing       : glibc-common-2.34-40.el9.x86_64                     17/177 
  Installing       : glibc-minimal-langpack-2.34-40.el9.x86_64           18/177 
  Installing       : zlib-1.2.11-34.el9.x86_64                           19/177 
  Installing       : xz-libs-5.2.5-8.el9_0.x86_64                        20/177 
  Installing       : bzip2-libs-1.0.8-8.el9.x86_64                       21/177 
  Installing       : libzstd-1.5.1-2.el9.x86_64                          22/177 
  Installing       : libxcrypt-4.4.18-3.el9.x86_64                       23/177 
  Installing       : libcap-2.48-8.el9.x86_64                            24/177 
  Installing       : sqlite-libs-3.34.1-5.el9.x86_64                     25/177 
  Installing       : popt-1.18-8.el9.x86_64                              26/177 
  Installing       : libuuid-2.37.4-9.el9.x86_64                         27/177 
  Installing       : libgpg-error-1.42-5.el9.x86_64                      28/177 
  Installing       : libffi-3.4.2-7.el9.x86_64                           29/177 
  Installing       : p11-kit-0.24.1-2.el9.x86_64                         30/177 
  Installing       : libxml2-2.9.13-2.el9.x86_64                         31/177 
  Installing       : json-c-0.14-11.el9.x86_64                           32/177 
  Installing       : readline-8.1-4.el9.x86_64                           33/177 
  Installing       : libsmartcols-2.37.4-9.el9.x86_64                    34/177 
  Installing       : lua-libs-5.4.2-4.el9_0.3.x86_64                     35/177 
  Installing       : libgcrypt-1.10.0-8.el9_0.x86_64                     36/177 
  Installing       : file-libs-5.39-10.el9.x86_64                        37/177 
  Installing       : elfutils-libelf-0.187-5.el9.x86_64                  38/177 
  Installing       : lz4-libs-1.9.3-5.el9.x86_64                         39/177 
  Installing       : libcap-ng-0.8.2-7.el9.x86_64                        40/177 
  Installing       : audit-libs-3.0.7-103.el9.x86_64                     41/177 
  Installing       : libunistring-0.9.10-15.el9.x86_64                   42/177 
  Installing       : libidn2-2.3.0-7.el9.x86_64                          43/177 
  Installing       : dmidecode-1:3.3-7.el9.x86_64                        44/177 
  Installing       : gmp-1:6.2.0-10.el9.x86_64                           45/177 
  Installing       : libattr-2.5.1-3.el9.x86_64                          46/177 
  Installing       : libacl-2.3.1-3.el9.x86_64                           47/177 
  Installing       : libcom_err-1.46.5-3.el9.x86_64                      48/177 
  Installing       : expat-2.4.9-1.el9_1.x86_64                          49/177 
  Installing       : libstdc++-11.3.1-2.1.el9.x86_64                     50/177 
  Installing       : libassuan-2.5.5-3.el9.x86_64                        51/177 
  Installing       : libtasn1-4.16.0-7.el9.x86_64                        52/177 
  Installing       : pcre-8.44-3.el9.3.x86_64                            53/177 
  Installing       : keyutils-libs-1.6.1-4.el9.x86_64                    54/177 
  Installing       : libsigsegv-2.13-4.el9.x86_64                        55/177 
  Installing       : grep-3.6-5.el9.x86_64                               56/177 
  Installing       : gdbm-libs-1:1.19-4.el9.x86_64                       57/177 
  Installing       : pcre2-10.40-2.el9.x86_64                            58/177 
  Installing       : libsepol-3.4-1.1.el9.x86_64                         59/177 
  Installing       : libselinux-3.4-3.el9.x86_64                         60/177 
  Installing       : sed-4.8-9.el9.x86_64                                61/177 
  Installing       : libsemanage-3.4-2.el9.x86_64                        62/177 
  Installing       : shadow-utils-2:4.9-5.el9.x86_64                     63/177 
  Running scriptlet: libutempter-1.2.1-6.el9.x86_64                      64/177 
  Installing       : libutempter-1.2.1-6.el9.x86_64                      64/177 
  Installing       : libcomps-0.1.18-1.el9.x86_64                        65/177 
  Installing       : acl-2.3.1-3.el9.x86_64                              66/177 
  Installing       : mpfr-4.1.0-7.el9.x86_64                             67/177 
  Installing       : gawk-5.1.0-6.el9.x86_64                             68/177 
  Installing       : libpsl-0.21.1-5.el9.x86_64                          69/177 
  Installing       : libksba-1.5.1-5.el9_0.x86_64                        70/177 
  Installing       : systemd-rpm-macros-250-12.el9_1.noarch              71/177 
  Installing       : libseccomp-2.5.2-2.el9.x86_64                       72/177 
  Installing       : npth-1.6-8.el9.x86_64                               73/177 
  Installing       : libnghttp2-1.43.0-5.el9.x86_64                      74/177 
  Installing       : libbrotli-1.0.9-6.el9.x86_64                        75/177 
  Installing       : libverto-0.3.2-3.el9.x86_64                         76/177 
  Installing       : libyaml-0.2.5-7.el9.x86_64                          77/177 
  Installing       : libdb-5.3.28-53.el9.x86_64                          78/177 
  Installing       : libeconf-0.4.1-2.el9.x86_64                         79/177 
  Installing       : alternatives-1.20-2.el9.x86_64                      80/177 
  Installing       : p11-kit-trust-0.24.1-2.el9.x86_64                   81/177 
  Running scriptlet: p11-kit-trust-0.24.1-2.el9.x86_64                   81/177 
  Installing       : openssl-libs-1:3.0.1-43.el9_0.x86_64                82/177 
  Installing       : coreutils-8.32-32.el9.x86_64                        83/177 
  Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch         84/177 
  Installing       : ca-certificates-2022.2.54-90.2.el9_0.noarch         84/177 
  Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch         84/177 
  Installing       : systemd-libs-250-12.el9_1.x86_64                    85/177 
  Running scriptlet: systemd-libs-250-12.el9_1.x86_64                    85/177 
  Installing       : libblkid-2.37.4-9.el9.x86_64                        86/177 
  Running scriptlet: libblkid-2.37.4-9.el9.x86_64                        86/177 
  Installing       : libmount-2.37.4-9.el9.x86_64                        87/177 
  Installing       : krb5-libs-1.19.1-24.el9_1.x86_64                    88/177 
  Installing       : cyrus-sasl-lib-2.1.27-20.el9.x86_64                 89/177 
  Installing       : util-linux-core-2.37.4-9.el9.x86_64                 90/177 
  Running scriptlet: util-linux-core-2.37.4-9.el9.x86_64                 90/177 
  Installing       : libfdisk-2.37.4-9.el9.x86_64                        91/177 
  Installing       : dbus-libs-1:1.12.20-6.el9.x86_64                    92/177 
  Installing       : python3-pip-wheel-21.2.3-6.el9.noarch               93/177 
  Installing       : python3-3.9.14-1.el9_1.1.x86_64                     94/177 
  Installing       : python3-libs-3.9.14-1.el9_1.1.x86_64                95/177 
  Installing       : python3-six-1.15.0-9.el9.noarch                     96/177 
  Installing       : python3-dateutil-1:2.8.1-6.el9.noarch               97/177 
  Installing       : python3-iniparse-0.4-45.el9.noarch                  98/177 
  Installing       : python3-setuptools-53.0.0-10.el9.noarch             99/177 
  Installing       : python3-idna-2.10-7.el9.noarch                     100/177 
  Installing       : python3-inotify-0.9.6-25.el9.noarch                101/177 
  Installing       : python3-libcomps-0.1.18-1.el9.x86_64               102/177 
  Installing       : python3-decorator-4.4.2-6.el9.noarch               103/177 
  Installing       : python3-chardet-4.0.0-5.el9.noarch                 104/177 
  Installing       : python3-pysocks-1.7.1-12.el9.noarch                105/177 
  Installing       : python3-urllib3-1.26.5-3.el9.noarch                106/177 
  Installing       : python3-requests-2.25.1-6.el9.noarch               107/177 
  Installing       : python3-cloud-what-1.29.30-1.el9.x86_64            108/177 
  Installing       : openssl-1:3.0.1-43.el9_0.x86_64                    109/177 
  Installing       : gzip-1.12-1.el9.x86_64                             110/177 
  Installing       : cracklib-2.9.6-27.el9.x86_64                       111/177 
  Installing       : cracklib-dicts-2.9.6-27.el9.x86_64                 112/177 
  Installing       : pam-1.5.1-12.el9.x86_64                            113/177 
  Installing       : libpwquality-1.4.4-8.el9.x86_64                    114/177 
  Installing       : util-linux-2.37.4-9.el9.x86_64                     115/177 
  Installing       : kmod-libs-28-7.el9.x86_64                          116/177 
  Installing       : device-mapper-9:1.02.185-3.el9.x86_64              117/177 
  Installing       : device-mapper-libs-9:1.02.185-3.el9.x86_64         118/177 
  Installing       : cryptsetup-libs-2.4.3-5.el9.x86_64                 119/177 
  Installing       : systemd-pam-250-12.el9_1.x86_64                    120/177 
  Installing       : dbus-1:1.12.20-6.el9.x86_64                        121/177 
  Running scriptlet: systemd-250-12.el9_1.x86_64                        122/177 
  Installing       : systemd-250-12.el9_1.x86_64                        122/177 
  Running scriptlet: systemd-250-12.el9_1.x86_64                        122/177 
  Installing       : dbus-common-1:1.12.20-6.el9.noarch                 123/177 
  Running scriptlet: dbus-common-1:1.12.20-6.el9.noarch                 123/177 
Created symlink /etc/systemd/system/sockets.target.wants/dbus.socket → /usr/lib/systemd/system/dbus.socket.
Created symlink /etc/systemd/user/sockets.target.wants/dbus.socket → /usr/lib/systemd/user/dbus.socket.

  Running scriptlet: dbus-broker-28-7.el9.x86_64                        124/177 
  Installing       : dbus-broker-28-7.el9.x86_64                        124/177 
  Running scriptlet: dbus-broker-28-7.el9.x86_64                        124/177 
Created symlink /etc/systemd/system/dbus.service → /usr/lib/systemd/system/dbus-broker.service.
Created symlink /etc/systemd/user/dbus.service → /usr/lib/systemd/user/dbus-broker.service.

  Installing       : elfutils-default-yama-scope-0.187-5.el9.noarch     125/177 
  Running scriptlet: elfutils-default-yama-scope-0.187-5.el9.noarch     125/177 
  Installing       : elfutils-libs-0.187-5.el9.x86_64                   126/177 
  Installing       : libevent-2.1.12-6.el9.x86_64                       127/177 
  Installing       : openldap-2.6.2-3.el9.x86_64                        128/177 
  Installing       : openldap-compat-2.6.2-3.el9.x86_64                 129/177 
  Installing       : libarchive-3.5.3-3.el9.x86_64                      130/177 
  Installing       : nettle-3.8-3.el9_0.x86_64                          131/177 
  Installing       : gnutls-3.7.6-12.el9_0.x86_64                       132/177 
  Installing       : glib2-2.68.4-5.el9.x86_64                          133/177 
  Installing       : python3-dbus-1.2.18-2.el9.x86_64                   134/177 
  Installing       : libuser-0.63-11.el9.x86_64                         135/177 
  Installing       : gnupg2-2.3.3-2.el9_0.x86_64                        136/177 
  Installing       : gpgme-1.15.1-6.el9.x86_64                          137/177 
  Installing       : python3-gpg-1.15.1-6.el9.x86_64                    138/177 
  Installing       : passwd-0.80-12.el9.x86_64                          139/177 
  Installing       : usermode-1.114-4.el9.x86_64                        140/177 
  Installing       : json-glib-1.6.6-1.el9.x86_64                       141/177 
  Installing       : librhsm-0.0.3-7.el9.x86_64                         142/177 
  Installing       : gobject-introspection-1.68.0-10.el9.x86_64         143/177 
  Installing       : python3-gobject-base-noarch-3.40.1-6.el9.noarch    144/177 
  Installing       : python3-gobject-base-3.40.1-6.el9.x86_64           145/177 
  Installing       : which-2.21-28.el9.x86_64                           146/177 
  Installing       : virt-what-1.25-1.el9.x86_64                        147/177 
  Installing       : libgomp-11.3.1-2.1.el9.x86_64                      148/177 
  Installing       : libnl3-3.7.0-1.el9.x86_64                          149/177 
  Installing       : python3-ethtool-0.15-2.el9.x86_64                  150/177 
  Installing       : libssh-config-0.9.6-3.el9.noarch                   151/177 
  Installing       : libssh-0.9.6-3.el9.x86_64                          152/177 
  Installing       : libcurl-7.76.1-19.el9.x86_64                       153/177 
  Installing       : librepo-1.14.2-3.el9.x86_64                        154/177 
  Installing       : python3-librepo-1.14.2-3.el9.x86_64                155/177 
  Installing       : curl-7.76.1-19.el9.x86_64                          156/177 
  Installing       : rpm-libs-4.16.1.3-19.el9_1.x86_64                  157/177 
  Installing       : rpm-4.16.1.3-19.el9_1.x86_64                       158/177 
  Installing       : libmodulemd-2.13.0-2.el9.x86_64                    159/177 
  Installing       : libsolv-0.7.22-1.el9.x86_64                        160/177 
  Installing       : libdnf-0.67.0-3.el9.x86_64                         161/177 
  Installing       : python3-libdnf-0.67.0-3.el9.x86_64                 162/177 
  Installing       : python3-hawkey-0.67.0-3.el9.x86_64                 163/177 
  Installing       : rpm-build-libs-4.16.1.3-19.el9_1.x86_64            164/177 
  Running scriptlet: tpm2-tss-3.0.3-8.el9.x86_64                        165/177 
  Installing       : tpm2-tss-3.0.3-8.el9.x86_64                        165/177 
  Installing       : ima-evm-utils-1.4-4.el9.x86_64                     166/177 
  Installing       : rpm-sign-libs-4.16.1.3-19.el9_1.x86_64             167/177 
  Installing       : python3-rpm-4.16.1.3-19.el9_1.x86_64               168/177 
  Installing       : python3-subscription-manager-rhsm-1.29.30-1.el9.   169/177 
  Installing       : libreport-filesystem-2.15.2-6.el9.noarch           170/177 
  Installing       : dnf-data-4.12.0-4.el9.noarch                       171/177 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : python3-dnf-4.12.0-4.el9.noarch                    172/177 
  Installing       : python3-dnf-plugins-core-4.1.0-3.el9.noarch        173/177 
  Installing       : dnf-4.12.0-4.el9.noarch                            174/177 
  Running scriptlet: dnf-4.12.0-4.el9.noarch                            174/177 
Created symlink /etc/systemd/system/timers.target.wants/dnf-makecache.timer → /usr/lib/systemd/system/dnf-makecache.timer.

  Installing       : libdnf-plugin-subscription-manager-1.29.30-1.el9   175/177 
  Running scriptlet: subscription-manager-1.29.30-1.el9.x86_64          176/177 
  Installing       : subscription-manager-1.29.30-1.el9.x86_64          176/177 
  Running scriptlet: subscription-manager-1.29.30-1.el9.x86_64          176/177 
Created symlink /etc/systemd/system/multi-user.target.wants/rhsmcertd.service → /usr/lib/systemd/system/rhsmcertd.service.
/var/tmp/rpm-tmp.az8Ojp: line 17: find: command not found
/var/tmp/rpm-tmp.az8Ojp: line 17: xargs: command not found

  Installing       : dnf-plugins-core-4.1.0-3.el9.noarch                177/177 
  Running scriptlet: filesystem-3.16-2.el9.x86_64                       177/177 
  Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch        177/177 
  Running scriptlet: rpm-4.16.1.3-19.el9_1.x86_64                       177/177 
  Running scriptlet: subscription-manager-1.29.30-1.el9.x86_64          177/177 
  Running scriptlet: dnf-plugins-core-4.1.0-3.el9.noarch                177/177 
  Verifying        : json-glib-1.6.6-1.el9.x86_64                         1/177 
  Verifying        : libseccomp-2.5.2-2.el9.x86_64                        2/177 
  Verifying        : libpwquality-1.4.4-8.el9.x86_64                      3/177 
  Verifying        : libmodulemd-2.13.0-2.el9.x86_64                      4/177 
  Verifying        : libutempter-1.2.1-6.el9.x86_64                       5/177 
  Verifying        : python3-ethtool-0.15-2.el9.x86_64                    6/177 
  Verifying        : python3-iniparse-0.4-45.el9.noarch                   7/177 
  Verifying        : python3-setuptools-53.0.0-10.el9.noarch              8/177 
  Verifying        : lz4-libs-1.9.3-5.el9.x86_64                          9/177 
  Verifying        : libassuan-2.5.5-3.el9.x86_64                        10/177 
  Verifying        : python3-decorator-4.4.2-6.el9.noarch                11/177 
  Verifying        : libcap-2.48-8.el9.x86_64                            12/177 
  Verifying        : npth-1.6-8.el9.x86_64                               13/177 
  Verifying        : python3-urllib3-1.26.5-3.el9.noarch                 14/177 
  Verifying        : cyrus-sasl-lib-2.1.27-20.el9.x86_64                 15/177 
  Verifying        : libacl-2.3.1-3.el9.x86_64                           16/177 
  Verifying        : python3-gpg-1.15.1-6.el9.x86_64                     17/177 
  Verifying        : libcap-ng-0.8.2-7.el9.x86_64                        18/177 
  Verifying        : python3-inotify-0.9.6-25.el9.noarch                 19/177 
  Verifying        : libnghttp2-1.43.0-5.el9.x86_64                      20/177 
  Verifying        : json-c-0.14-11.el9.x86_64                           21/177 
  Verifying        : filesystem-3.16-2.el9.x86_64                        22/177 
  Verifying        : kmod-libs-28-7.el9.x86_64                           23/177 
  Verifying        : python3-dbus-1.2.18-2.el9.x86_64                    24/177 
  Verifying        : gobject-introspection-1.68.0-10.el9.x86_64          25/177 
  Verifying        : libtasn1-4.16.0-7.el9.x86_64                        26/177 
  Verifying        : pcre-8.44-3.el9.3.x86_64                            27/177 
  Verifying        : libssh-0.9.6-3.el9.x86_64                           28/177 
  Verifying        : python3-idna-2.10-7.el9.noarch                      29/177 
  Verifying        : libreport-filesystem-2.15.2-6.el9.noarch            30/177 
  Verifying        : sed-4.8-9.el9.x86_64                                31/177 
  Verifying        : ncurses-libs-6.2-8.20210508.el9.x86_64              32/177 
  Verifying        : libcomps-0.1.18-1.el9.x86_64                        33/177 
  Verifying        : python3-libcomps-0.1.18-1.el9.x86_64                34/177 
  Verifying        : grep-3.6-5.el9.x86_64                               35/177 
  Verifying        : libunistring-0.9.10-15.el9.x86_64                   36/177 
  Verifying        : basesystem-11-13.el9.noarch                         37/177 
  Verifying        : libssh-config-0.9.6-3.el9.noarch                    38/177 
  Verifying        : usermode-1.114-4.el9.x86_64                         39/177 
  Verifying        : libbrotli-1.0.9-6.el9.x86_64                        40/177 
  Verifying        : libverto-0.3.2-3.el9.x86_64                         41/177 
  Verifying        : ncurses-base-6.2-8.20210508.el9.noarch              42/177 
  Verifying        : libxcrypt-4.4.18-3.el9.x86_64                       43/177 
  Verifying        : keyutils-libs-1.6.1-4.el9.x86_64                    44/177 
  Verifying        : libyaml-0.2.5-7.el9.x86_64                          45/177 
  Verifying        : acl-2.3.1-3.el9.x86_64                              46/177 
  Verifying        : mpfr-4.1.0-7.el9.x86_64                             47/177 
  Verifying        : popt-1.18-8.el9.x86_64                              48/177 
  Verifying        : readline-8.1-4.el9.x86_64                           49/177 
  Verifying        : cracklib-2.9.6-27.el9.x86_64                        50/177 
  Verifying        : libidn2-2.3.0-7.el9.x86_64                          51/177 
  Verifying        : gpgme-1.15.1-6.el9.x86_64                           52/177 
  Verifying        : passwd-0.80-12.el9.x86_64                           53/177 
  Verifying        : libevent-2.1.12-6.el9.x86_64                        54/177 
  Verifying        : python3-requests-2.25.1-6.el9.noarch                55/177 
  Verifying        : sqlite-libs-3.34.1-5.el9.x86_64                     56/177 
  Verifying        : libgpg-error-1.42-5.el9.x86_64                      57/177 
  Verifying        : libffi-3.4.2-7.el9.x86_64                           58/177 
  Verifying        : libzstd-1.5.1-2.el9.x86_64                          59/177 
  Verifying        : p11-kit-0.24.1-2.el9.x86_64                         60/177 
  Verifying        : libpsl-0.21.1-5.el9.x86_64                          61/177 
  Verifying        : python3-chardet-4.0.0-5.el9.noarch                  62/177 
  Verifying        : glib2-2.68.4-5.el9.x86_64                           63/177 
  Verifying        : python3-pysocks-1.7.1-12.el9.noarch                 64/177 
  Verifying        : librhsm-0.0.3-7.el9.x86_64                          65/177 
  Verifying        : publicsuffix-list-dafsa-20210518-3.el9.noarch       66/177 
  Verifying        : libdb-5.3.28-53.el9.x86_64                          67/177 
  Verifying        : dmidecode-1:3.3-7.el9.x86_64                        68/177 
  Verifying        : gmp-1:6.2.0-10.el9.x86_64                           69/177 
  Verifying        : libeconf-0.4.1-2.el9.x86_64                         70/177 
  Verifying        : libsigsegv-2.13-4.el9.x86_64                        71/177 
  Verifying        : alternatives-1.20-2.el9.x86_64                      72/177 
  Verifying        : libattr-2.5.1-3.el9.x86_64                          73/177 
  Verifying        : ima-evm-utils-1.4-4.el9.x86_64                      74/177 
  Verifying        : python3-setuptools-wheel-53.0.0-10.el9.noarch       75/177 
  Verifying        : bzip2-libs-1.0.8-8.el9.x86_64                       76/177 
  Verifying        : python3-pip-wheel-21.2.3-6.el9.noarch               77/177 
  Verifying        : coreutils-8.32-32.el9.x86_64                        78/177 
  Verifying        : gdbm-libs-1:1.19-4.el9.x86_64                       79/177 
  Verifying        : libsmartcols-2.37.4-9.el9.x86_64                    80/177 
  Verifying        : ca-certificates-2022.2.54-90.2.el9_0.noarch         81/177 
  Verifying        : libgcrypt-1.10.0-8.el9_0.x86_64                     82/177 
  Verifying        : nettle-3.8-3.el9_0.x86_64                           83/177 
  Verifying        : gnutls-3.7.6-12.el9_0.x86_64                        84/177 
  Verifying        : libgcc-11.3.1-2.1.el9.x86_64                        85/177 
  Verifying        : dnf-data-4.12.0-4.el9.noarch                        86/177 
  Verifying        : cracklib-dicts-2.9.6-27.el9.x86_64                  87/177 
  Verifying        : python3-dnf-4.12.0-4.el9.noarch                     88/177 
  Verifying        : shadow-utils-2:4.9-5.el9.x86_64                     89/177 
  Verifying        : glibc-2.34-40.el9.x86_64                            90/177 
  Verifying        : zlib-1.2.11-34.el9.x86_64                           91/177 
  Verifying        : lua-libs-5.4.2-4.el9_0.3.x86_64                     92/177 
  Verifying        : xz-libs-5.2.5-8.el9_0.x86_64                        93/177 
  Verifying        : curl-7.76.1-19.el9.x86_64                           94/177 
  Verifying        : dnf-plugins-core-4.1.0-3.el9.noarch                 95/177 
  Verifying        : which-2.21-28.el9.x86_64                            96/177 
  Verifying        : bash-5.1.8-5.el9.x86_64                             97/177 
  Verifying        : p11-kit-trust-0.24.1-2.el9.x86_64                   98/177 
  Verifying        : pcre2-syntax-10.40-2.el9.noarch                     99/177 
  Verifying        : libfdisk-2.37.4-9.el9.x86_64                       100/177 
  Verifying        : util-linux-core-2.37.4-9.el9.x86_64                101/177 
  Verifying        : libuser-0.63-11.el9.x86_64                         102/177 
  Verifying        : libgomp-11.3.1-2.1.el9.x86_64                      103/177 
  Verifying        : openssl-1:3.0.1-43.el9_0.x86_64                    104/177 
  Verifying        : python3-six-1.15.0-9.el9.noarch                    105/177 
  Verifying        : pam-1.5.1-12.el9.x86_64                            106/177 
  Verifying        : libksba-1.5.1-5.el9_0.x86_64                       107/177 
  Verifying        : libxml2-2.9.13-2.el9.x86_64                        108/177 
  Verifying        : python3-dnf-plugins-core-4.1.0-3.el9.noarch        109/177 
  Verifying        : libsolv-0.7.22-1.el9.x86_64                        110/177 
  Verifying        : openssl-libs-1:3.0.1-43.el9_0.x86_64               111/177 
  Verifying        : gawk-5.1.0-6.el9.x86_64                            112/177 
  Verifying        : libdnf-plugin-subscription-manager-1.29.30-1.el9   113/177 
  Verifying        : gnupg2-2.3.3-2.el9_0.x86_64                        114/177 
  Verifying        : libnl3-3.7.0-1.el9.x86_64                          115/177 
  Verifying        : setup-2.13.7-7.el9.noarch                          116/177 
  Verifying        : python3-dateutil-1:2.8.1-6.el9.noarch              117/177 
  Verifying        : subscription-manager-rhsm-certificates-20220623-   118/177 
  Verifying        : libcom_err-1.46.5-3.el9.x86_64                     119/177 
  Verifying        : libselinux-3.4-3.el9.x86_64                        120/177 
  Verifying        : dbus-libs-1:1.12.20-6.el9.x86_64                   121/177 
  Verifying        : dnf-4.12.0-4.el9.noarch                            122/177 
  Verifying        : glibc-common-2.34-40.el9.x86_64                    123/177 
  Verifying        : systemd-250-12.el9_1.x86_64                        124/177 
  Verifying        : subscription-manager-1.29.30-1.el9.x86_64          125/177 
  Verifying        : pcre2-10.40-2.el9.x86_64                           126/177 
  Verifying        : glibc-minimal-langpack-2.34-40.el9.x86_64          127/177 
  Verifying        : python3-gobject-base-noarch-3.40.1-6.el9.noarch    128/177 
  Verifying        : python3-libdnf-0.67.0-3.el9.x86_64                 129/177 
  Verifying        : device-mapper-libs-9:1.02.185-3.el9.x86_64         130/177 
  Verifying        : libmount-2.37.4-9.el9.x86_64                       131/177 
  Verifying        : libuuid-2.37.4-9.el9.x86_64                        132/177 
  Verifying        : redhat-release-9.1-1.9.el9.x86_64                  133/177 
  Verifying        : file-libs-5.39-10.el9.x86_64                       134/177 
  Verifying        : openldap-2.6.2-3.el9.x86_64                        135/177 
  Verifying        : librepo-1.14.2-3.el9.x86_64                        136/177 
  Verifying        : audit-libs-3.0.7-103.el9.x86_64                    137/177 
  Verifying        : systemd-rpm-macros-250-12.el9_1.noarch             138/177 
  Verifying        : python3-hawkey-0.67.0-3.el9.x86_64                 139/177 
  Verifying        : python3-librepo-1.14.2-3.el9.x86_64                140/177 
  Verifying        : libsemanage-3.4-2.el9.x86_64                       141/177 
  Verifying        : util-linux-2.37.4-9.el9.x86_64                     142/177 
  Verifying        : python3-subscription-manager-rhsm-1.29.30-1.el9.   143/177 
  Verifying        : expat-2.4.9-1.el9_1.x86_64                         144/177 
  Verifying        : virt-what-1.25-1.el9.x86_64                        145/177 
  Verifying        : systemd-libs-250-12.el9_1.x86_64                   146/177 
  Verifying        : elfutils-default-yama-scope-0.187-5.el9.noarch     147/177 
  Verifying        : libcurl-7.76.1-19.el9.x86_64                       148/177 
  Verifying        : libarchive-3.5.3-3.el9.x86_64                      149/177 
  Verifying        : elfutils-libelf-0.187-5.el9.x86_64                 150/177 
  Verifying        : crypto-policies-20220815-1.git0fbe86f.el9.noarch   151/177 
  Verifying        : libblkid-2.37.4-9.el9.x86_64                       152/177 
  Verifying        : dbus-1:1.12.20-6.el9.x86_64                        153/177 
  Verifying        : libsepol-3.4-1.1.el9.x86_64                        154/177 
  Verifying        : gzip-1.12-1.el9.x86_64                             155/177 
  Verifying        : openldap-compat-2.6.2-3.el9.x86_64                 156/177 
  Verifying        : elfutils-libs-0.187-5.el9.x86_64                   157/177 
  Verifying        : dbus-common-1:1.12.20-6.el9.noarch                 158/177 
  Verifying        : python3-cloud-what-1.29.30-1.el9.x86_64            159/177 
  Verifying        : python3-gobject-base-3.40.1-6.el9.x86_64           160/177 
  Verifying        : systemd-pam-250-12.el9_1.x86_64                    161/177 
  Verifying        : cryptsetup-libs-2.4.3-5.el9.x86_64                 162/177 
  Verifying        : libstdc++-11.3.1-2.1.el9.x86_64                    163/177 
  Verifying        : coreutils-common-8.32-32.el9.x86_64                164/177 
  Verifying        : device-mapper-9:1.02.185-3.el9.x86_64              165/177 
  Verifying        : tpm2-tss-3.0.3-8.el9.x86_64                        166/177 
  Verifying        : dbus-broker-28-7.el9.x86_64                        167/177 
  Verifying        : libdnf-0.67.0-3.el9.x86_64                         168/177 
  Verifying        : python3-rpm-4.16.1.3-19.el9_1.x86_64               169/177 
  Verifying        : rpm-build-libs-4.16.1.3-19.el9_1.x86_64            170/177 
  Verifying        : rpm-sign-libs-4.16.1.3-19.el9_1.x86_64             171/177 
  Verifying        : rpm-libs-4.16.1.3-19.el9_1.x86_64                  172/177 
  Verifying        : rpm-4.16.1.3-19.el9_1.x86_64                       173/177 
  Verifying        : python3-3.9.14-1.el9_1.1.x86_64                    174/177 
  Verifying        : python3-libs-3.9.14-1.el9_1.1.x86_64               175/177 
  Verifying        : krb5-libs-1.19.1-24.el9_1.x86_64                   176/177 
  Verifying        : tzdata-2022g-1.el9_1.noarch                        177/177 
Installed products updated.

Installed:
  acl-2.3.1-3.el9.x86_64                                                        
  alternatives-1.20-2.el9.x86_64                                                
  audit-libs-3.0.7-103.el9.x86_64                                               
  basesystem-11-13.el9.noarch                                                   
  bash-5.1.8-5.el9.x86_64                                                       
  bzip2-libs-1.0.8-8.el9.x86_64                                                 
  ca-certificates-2022.2.54-90.2.el9_0.noarch                                   
  coreutils-8.32-32.el9.x86_64                                                  
  coreutils-common-8.32-32.el9.x86_64                                           
  cracklib-2.9.6-27.el9.x86_64                                                  
  cracklib-dicts-2.9.6-27.el9.x86_64                                            
  crypto-policies-20220815-1.git0fbe86f.el9.noarch                              
  cryptsetup-libs-2.4.3-5.el9.x86_64                                            
  curl-7.76.1-19.el9.x86_64                                                     
  cyrus-sasl-lib-2.1.27-20.el9.x86_64                                           
  dbus-1:1.12.20-6.el9.x86_64                                                   
  dbus-broker-28-7.el9.x86_64                                                   
  dbus-common-1:1.12.20-6.el9.noarch                                            
  dbus-libs-1:1.12.20-6.el9.x86_64                                              
  device-mapper-9:1.02.185-3.el9.x86_64                                         
  device-mapper-libs-9:1.02.185-3.el9.x86_64                                    
  dmidecode-1:3.3-7.el9.x86_64                                                  
  dnf-4.12.0-4.el9.noarch                                                       
  dnf-data-4.12.0-4.el9.noarch                                                  
  dnf-plugins-core-4.1.0-3.el9.noarch                                           
  elfutils-default-yama-scope-0.187-5.el9.noarch                                
  elfutils-libelf-0.187-5.el9.x86_64                                            
  elfutils-libs-0.187-5.el9.x86_64                                              
  expat-2.4.9-1.el9_1.x86_64                                                    
  file-libs-5.39-10.el9.x86_64                                                  
  filesystem-3.16-2.el9.x86_64                                                  
  gawk-5.1.0-6.el9.x86_64                                                       
  gdbm-libs-1:1.19-4.el9.x86_64                                                 
  glib2-2.68.4-5.el9.x86_64                                                     
  glibc-2.34-40.el9.x86_64                                                      
  glibc-common-2.34-40.el9.x86_64                                               
  glibc-minimal-langpack-2.34-40.el9.x86_64                                     
  gmp-1:6.2.0-10.el9.x86_64                                                     
  gnupg2-2.3.3-2.el9_0.x86_64                                                   
  gnutls-3.7.6-12.el9_0.x86_64                                                  
  gobject-introspection-1.68.0-10.el9.x86_64                                    
  gpgme-1.15.1-6.el9.x86_64                                                     
  grep-3.6-5.el9.x86_64                                                         
  gzip-1.12-1.el9.x86_64                                                        
  ima-evm-utils-1.4-4.el9.x86_64                                                
  json-c-0.14-11.el9.x86_64                                                     
  json-glib-1.6.6-1.el9.x86_64                                                  
  keyutils-libs-1.6.1-4.el9.x86_64                                              
  kmod-libs-28-7.el9.x86_64                                                     
  krb5-libs-1.19.1-24.el9_1.x86_64                                              
  libacl-2.3.1-3.el9.x86_64                                                     
  libarchive-3.5.3-3.el9.x86_64                                                 
  libassuan-2.5.5-3.el9.x86_64                                                  
  libattr-2.5.1-3.el9.x86_64                                                    
  libblkid-2.37.4-9.el9.x86_64                                                  
  libbrotli-1.0.9-6.el9.x86_64                                                  
  libcap-2.48-8.el9.x86_64                                                      
  libcap-ng-0.8.2-7.el9.x86_64                                                  
  libcom_err-1.46.5-3.el9.x86_64                                                
  libcomps-0.1.18-1.el9.x86_64                                                  
  libcurl-7.76.1-19.el9.x86_64                                                  
  libdb-5.3.28-53.el9.x86_64                                                    
  libdnf-0.67.0-3.el9.x86_64                                                    
  libdnf-plugin-subscription-manager-1.29.30-1.el9.x86_64                       
  libeconf-0.4.1-2.el9.x86_64                                                   
  libevent-2.1.12-6.el9.x86_64                                                  
  libfdisk-2.37.4-9.el9.x86_64                                                  
  libffi-3.4.2-7.el9.x86_64                                                     
  libgcc-11.3.1-2.1.el9.x86_64                                                  
  libgcrypt-1.10.0-8.el9_0.x86_64                                               
  libgomp-11.3.1-2.1.el9.x86_64                                                 
  libgpg-error-1.42-5.el9.x86_64                                                
  libidn2-2.3.0-7.el9.x86_64                                                    
  libksba-1.5.1-5.el9_0.x86_64                                                  
  libmodulemd-2.13.0-2.el9.x86_64                                               
  libmount-2.37.4-9.el9.x86_64                                                  
  libnghttp2-1.43.0-5.el9.x86_64                                                
  libnl3-3.7.0-1.el9.x86_64                                                     
  libpsl-0.21.1-5.el9.x86_64                                                    
  libpwquality-1.4.4-8.el9.x86_64                                               
  librepo-1.14.2-3.el9.x86_64                                                   
  libreport-filesystem-2.15.2-6.el9.noarch                                      
  librhsm-0.0.3-7.el9.x86_64                                                    
  libseccomp-2.5.2-2.el9.x86_64                                                 
  libselinux-3.4-3.el9.x86_64                                                   
  libsemanage-3.4-2.el9.x86_64                                                  
  libsepol-3.4-1.1.el9.x86_64                                                   
  libsigsegv-2.13-4.el9.x86_64                                                  
  libsmartcols-2.37.4-9.el9.x86_64                                              
  libsolv-0.7.22-1.el9.x86_64                                                   
  libssh-0.9.6-3.el9.x86_64                                                     
  libssh-config-0.9.6-3.el9.noarch                                              
  libstdc++-11.3.1-2.1.el9.x86_64                                               
  libtasn1-4.16.0-7.el9.x86_64                                                  
  libunistring-0.9.10-15.el9.x86_64                                             
  libuser-0.63-11.el9.x86_64                                                    
  libutempter-1.2.1-6.el9.x86_64                                                
  libuuid-2.37.4-9.el9.x86_64                                                   
  libverto-0.3.2-3.el9.x86_64                                                   
  libxcrypt-4.4.18-3.el9.x86_64                                                 
  libxml2-2.9.13-2.el9.x86_64                                                   
  libyaml-0.2.5-7.el9.x86_64                                                    
  libzstd-1.5.1-2.el9.x86_64                                                    
  lua-libs-5.4.2-4.el9_0.3.x86_64                                               
  lz4-libs-1.9.3-5.el9.x86_64                                                   
  mpfr-4.1.0-7.el9.x86_64                                                       
  ncurses-base-6.2-8.20210508.el9.noarch                                        
  ncurses-libs-6.2-8.20210508.el9.x86_64                                        
  nettle-3.8-3.el9_0.x86_64                                                     
  npth-1.6-8.el9.x86_64                                                         
  openldap-2.6.2-3.el9.x86_64                                                   
  openldap-compat-2.6.2-3.el9.x86_64                                            
  openssl-1:3.0.1-43.el9_0.x86_64                                               
  openssl-libs-1:3.0.1-43.el9_0.x86_64                                          
  p11-kit-0.24.1-2.el9.x86_64                                                   
  p11-kit-trust-0.24.1-2.el9.x86_64                                             
  pam-1.5.1-12.el9.x86_64                                                       
  passwd-0.80-12.el9.x86_64                                                     
  pcre-8.44-3.el9.3.x86_64                                                      
  pcre2-10.40-2.el9.x86_64                                                      
  pcre2-syntax-10.40-2.el9.noarch                                               
  popt-1.18-8.el9.x86_64                                                        
  publicsuffix-list-dafsa-20210518-3.el9.noarch                                 
  python3-3.9.14-1.el9_1.1.x86_64                                               
  python3-chardet-4.0.0-5.el9.noarch                                            
  python3-cloud-what-1.29.30-1.el9.x86_64                                       
  python3-dateutil-1:2.8.1-6.el9.noarch                                         
  python3-dbus-1.2.18-2.el9.x86_64                                              
  python3-decorator-4.4.2-6.el9.noarch                                          
  python3-dnf-4.12.0-4.el9.noarch                                               
  python3-dnf-plugins-core-4.1.0-3.el9.noarch                                   
  python3-ethtool-0.15-2.el9.x86_64                                             
  python3-gobject-base-3.40.1-6.el9.x86_64                                      
  python3-gobject-base-noarch-3.40.1-6.el9.noarch                               
  python3-gpg-1.15.1-6.el9.x86_64                                               
  python3-hawkey-0.67.0-3.el9.x86_64                                            
  python3-idna-2.10-7.el9.noarch                                                
  python3-iniparse-0.4-45.el9.noarch                                            
  python3-inotify-0.9.6-25.el9.noarch                                           
  python3-libcomps-0.1.18-1.el9.x86_64                                          
  python3-libdnf-0.67.0-3.el9.x86_64                                            
  python3-librepo-1.14.2-3.el9.x86_64                                           
  python3-libs-3.9.14-1.el9_1.1.x86_64                                          
  python3-pip-wheel-21.2.3-6.el9.noarch                                         
  python3-pysocks-1.7.1-12.el9.noarch                                           
  python3-requests-2.25.1-6.el9.noarch                                          
  python3-rpm-4.16.1.3-19.el9_1.x86_64                                          
  python3-setuptools-53.0.0-10.el9.noarch                                       
  python3-setuptools-wheel-53.0.0-10.el9.noarch                                 
  python3-six-1.15.0-9.el9.noarch                                               
  python3-subscription-manager-rhsm-1.29.30-1.el9.x86_64                        
  python3-urllib3-1.26.5-3.el9.noarch                                           
  readline-8.1-4.el9.x86_64                                                     
  redhat-release-9.1-1.9.el9.x86_64                                             
  rpm-4.16.1.3-19.el9_1.x86_64                                                  
  rpm-build-libs-4.16.1.3-19.el9_1.x86_64                                       
  rpm-libs-4.16.1.3-19.el9_1.x86_64                                             
  rpm-sign-libs-4.16.1.3-19.el9_1.x86_64                                        
  sed-4.8-9.el9.x86_64                                                          
  setup-2.13.7-7.el9.noarch                                                     
  shadow-utils-2:4.9-5.el9.x86_64                                               
  sqlite-libs-3.34.1-5.el9.x86_64                                               
  subscription-manager-1.29.30-1.el9.x86_64                                     
  subscription-manager-rhsm-certificates-20220623-1.el9.noarch                  
  systemd-250-12.el9_1.x86_64                                                   
  systemd-libs-250-12.el9_1.x86_64                                              
  systemd-pam-250-12.el9_1.x86_64                                               
  systemd-rpm-macros-250-12.el9_1.noarch                                        
  tpm2-tss-3.0.3-8.el9.x86_64                                                   
  tzdata-2022g-1.el9_1.noarch                                                   
  usermode-1.114-4.el9.x86_64                                                   
  util-linux-2.37.4-9.el9.x86_64                                                
  util-linux-core-2.37.4-9.el9.x86_64                                           
  virt-what-1.25-1.el9.x86_64                                                   
  which-2.21-28.el9.x86_64                                                      
  xz-libs-5.2.5-8.el9_0.x86_64                                                  
  zlib-1.2.11-34.el9.x86_64                                                     

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  39 kB/s | 3.6 kB     00:00    
Copr repository                                 2.1 MB/s | 595 kB     00:00    
Additional repo copr_aminasyan_el9_collection    40 kB/s | 3.6 kB     00:00    
Additional repo copr_aminasyan_el9_collection   2.1 MB/s | 595 kB     00:00    
Additional repo http_mirror_stream_centos_org_S  29 kB/s | 3.0 kB     00:00    
Red Hat Enterprise Linux - BaseOS                16 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             18 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  17 kB/s | 4.0 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  246 kB/s |  28 kB     00:00    
Dependencies resolved.
================================================================================
 Package                     Arch   Version                     Repo       Size
================================================================================
Installing:
 bash                        x86_64 5.1.8-5.el9                 baseos    1.7 M
 bzip2                       x86_64 1.0.8-8.el9                 baseos     60 k
 coreutils                   x86_64 8.32-32.el9                 baseos    1.2 M
 cpio                        x86_64 2.13-16.el9                 baseos    279 k
 diffutils                   x86_64 3.7-12.el9                  baseos    402 k
 epel-rpm-macros             noarch 9-7.el9                     epel       16 k
 findutils                   x86_64 1:4.8.0-5.el9               baseos    552 k
 gawk                        x86_64 5.1.0-6.el9                 baseos    1.0 M
 glibc-minimal-langpack      x86_64 2.34-40.el9                 baseos     29 k
 grep                        x86_64 3.6-5.el9                   baseos    273 k
 gzip                        x86_64 1.12-1.el9                  baseos    167 k
 info                        x86_64 6.7-15.el9                  baseos    228 k
 patch                       x86_64 2.7.6-16.el9                appstream 130 k
 redhat-release              x86_64 9.1-1.9.el9                 baseos     46 k
 redhat-rpm-config           noarch 196-1.el9                   appstream  77 k
 rpm-build                   x86_64 4.16.1.3-19.el9_1           appstream 106 k
 sed                         x86_64 4.8-9.el9                   baseos    309 k
 shadow-utils                x86_64 2:4.9-5.el9                 baseos    1.2 M
 tar                         x86_64 2:1.34-5.el9                baseos    890 k
 unzip                       x86_64 6.0-56.el9                  baseos    186 k
 util-linux                  x86_64 2.37.4-9.el9                baseos    2.3 M
 which                       x86_64 2.21-28.el9                 baseos     45 k
 xz                          x86_64 5.2.5-8.el9_0               baseos    230 k
Installing dependencies:
 alternatives                x86_64 1.20-2.el9                  baseos     40 k
 ansible-srpm-macros         noarch 1-8.1.el9                   epel      8.5 k
 audit-libs                  x86_64 3.0.7-103.el9               baseos    121 k
 basesystem                  noarch 11-13.el9                   baseos    8.0 k
 binutils                    x86_64 2.35.2-24.el9               baseos    4.6 M
 binutils-gold               x86_64 2.35.2-24.el9               baseos    738 k
 bzip2-libs                  x86_64 1.0.8-8.el9                 baseos     42 k
 ca-certificates             noarch 2022.2.54-90.2.el9_0        baseos    835 k
 coreutils-common            x86_64 8.32-32.el9                 baseos    2.0 M
 cracklib                    x86_64 2.9.6-27.el9                baseos     99 k
 cracklib-dicts              x86_64 2.9.6-27.el9                baseos    3.6 M
 crypto-policies             noarch 20220815-1.git0fbe86f.el9   baseos     85 k
 curl                        x86_64 7.76.1-19.el9               baseos    300 k
 cyrus-sasl-lib              x86_64 2.1.27-20.el9               baseos    774 k
 dwz                         x86_64 0.14-3.el9                  appstream 130 k
 ed                          x86_64 1.14.2-12.el9               baseos     78 k
 efi-srpm-macros             noarch 6-2.el9_0                   appstream  24 k
 elfutils                    x86_64 0.187-5.el9                 baseos    533 k
 elfutils-debuginfod-client  x86_64 0.187-5.el9                 baseos     41 k
 elfutils-default-yama-scope noarch 0.187-5.el9                 baseos     16 k
 elfutils-libelf             x86_64 0.187-5.el9                 baseos    199 k
 elfutils-libs               x86_64 0.187-5.el9                 baseos    257 k
 file                        x86_64 5.39-10.el9                 baseos     52 k
 file-libs                   x86_64 5.39-10.el9                 baseos    592 k
 filesystem                  x86_64 3.16-2.el9                  baseos    4.7 M
 fonts-srpm-macros           noarch 1:2.0.5-7.el9.1             appstream  29 k
 gdb-minimal                 x86_64 10.2-10.el9                 appstream 3.5 M
 gdbm-libs                   x86_64 1:1.19-4.el9                baseos     56 k
 ghc-srpm-macros             noarch 1.5.0-6.el9                 appstream 9.0 k
 glibc                       x86_64 2.34-40.el9                 baseos    1.9 M
 glibc-common                x86_64 2.34-40.el9                 baseos    313 k
 glibc-gconv-extra           x86_64 2.34-40.el9                 baseos    1.7 M
 gmp                         x86_64 1:6.2.0-10.el9              baseos    320 k
 go-srpm-macros              noarch 3.0.9-9.el9                 appstream  28 k
 go-srpm-macros-epel         noarch 1-8.el9                     epel       22 k
 groff-base                  x86_64 1.22.4-10.el9               baseos    1.1 M
 kernel-srpm-macros          noarch 1.0-11.el9                  appstream  17 k
 keyutils-libs               x86_64 1.6.1-4.el9                 baseos     34 k
 krb5-libs                   x86_64 1.19.1-24.el9_1             baseos    733 k
 libacl                      x86_64 2.3.1-3.el9                 baseos     26 k
 libarchive                  x86_64 3.5.3-3.el9                 baseos    392 k
 libattr                     x86_64 2.5.1-3.el9                 baseos     20 k
 libblkid                    x86_64 2.37.4-9.el9                baseos    110 k
 libbrotli                   x86_64 1.0.9-6.el9                 baseos    317 k
 libcap                      x86_64 2.48-8.el9                  baseos     76 k
 libcap-ng                   x86_64 0.8.2-7.el9                 baseos     36 k
 libcom_err                  x86_64 1.46.5-3.el9                baseos     29 k
 libcurl                     x86_64 7.76.1-19.el9               baseos    289 k
 libdb                       x86_64 5.3.28-53.el9               baseos    740 k
 libeconf                    x86_64 0.4.1-2.el9                 baseos     31 k
 libevent                    x86_64 2.1.12-6.el9                baseos    268 k
 libfdisk                    x86_64 2.37.4-9.el9                baseos    156 k
 libffi                      x86_64 3.4.2-7.el9                 baseos     40 k
 libgcc                      x86_64 11.3.1-2.1.el9              baseos    119 k
 libgcrypt                   x86_64 1.10.0-8.el9_0              baseos    513 k
 libgomp                     x86_64 11.3.1-2.1.el9              baseos    294 k
 libgpg-error                x86_64 1.42-5.el9                  baseos    220 k
 libidn2                     x86_64 2.3.0-7.el9                 baseos    105 k
 libmount                    x86_64 2.37.4-9.el9                baseos    136 k
 libnghttp2                  x86_64 1.43.0-5.el9                baseos     76 k
 libpkgconf                  x86_64 1.7.3-9.el9                 baseos     38 k
 libpsl                      x86_64 0.21.1-5.el9                baseos     66 k
 libpwquality                x86_64 1.4.4-8.el9                 baseos    123 k
 libselinux                  x86_64 3.4-3.el9                   baseos     88 k
 libsemanage                 x86_64 3.4-2.el9                   baseos    121 k
 libsepol                    x86_64 3.4-1.1.el9                 baseos    317 k
 libsigsegv                  x86_64 2.13-4.el9                  baseos     30 k
 libsmartcols                x86_64 2.37.4-9.el9                baseos     66 k
 libssh                      x86_64 0.9.6-3.el9                 baseos    210 k
 libssh-config               noarch 0.9.6-3.el9                 baseos     11 k
 libstdc++                   x86_64 11.3.1-2.1.el9              baseos    766 k
 libtasn1                    x86_64 4.16.0-7.el9                baseos     78 k
 libunistring                x86_64 0.9.10-15.el9               baseos    499 k
 libutempter                 x86_64 1.2.1-6.el9                 baseos     30 k
 libuuid                     x86_64 2.37.4-9.el9                baseos     30 k
 libverto                    x86_64 0.3.2-3.el9                 baseos     24 k
 libxcrypt                   x86_64 4.4.18-3.el9                baseos    120 k
 libxml2                     x86_64 2.9.13-2.el9                baseos    752 k
 libzstd                     x86_64 1.5.1-2.el9                 baseos    332 k
 lua-libs                    x86_64 5.4.2-4.el9_0.3             baseos    214 k
 lua-srpm-macros             noarch 1-6.el9                     appstream  10 k
 lz4-libs                    x86_64 1.9.3-5.el9                 baseos     69 k
 mpfr                        x86_64 4.1.0-7.el9                 baseos    329 k
 ncurses                     x86_64 6.2-8.20210508.el9          baseos    412 k
 ncurses-base                noarch 6.2-8.20210508.el9          baseos    100 k
 ncurses-libs                x86_64 6.2-8.20210508.el9          baseos    334 k
 ocaml-srpm-macros           noarch 6-6.el9                     appstream 9.1 k
 openblas-srpm-macros        noarch 2-11.el9                    appstream 8.6 k
 openldap                    x86_64 2.6.2-3.el9                 baseos    287 k
 openssl                     x86_64 1:3.0.1-43.el9_0            baseos    1.2 M
 openssl-libs                x86_64 1:3.0.1-43.el9_0            baseos    2.1 M
 p11-kit                     x86_64 0.24.1-2.el9                baseos    387 k
 p11-kit-trust               x86_64 0.24.1-2.el9                baseos    148 k
 pam                         x86_64 1.5.1-12.el9                baseos    625 k
 pcre                        x86_64 8.44-3.el9.3                baseos    202 k
 pcre2                       x86_64 10.40-2.el9                 baseos    239 k
 pcre2-syntax                noarch 10.40-2.el9                 baseos    147 k
 perl-Carp                   noarch 1.50-460.el9                appstream  31 k
 perl-Class-Struct           noarch 0.66-479.el9                appstream  32 k
 perl-Encode                 x86_64 4:3.08-462.el9              appstream 1.7 M
 perl-Errno                  x86_64 1.30-479.el9                appstream  25 k
 perl-Exporter               noarch 5.74-461.el9                appstream  34 k
 perl-Fcntl                  x86_64 1.13-479.el9                appstream  32 k
 perl-File-Basename          noarch 2.85-479.el9                appstream  27 k
 perl-File-Path              noarch 2.18-4.el9                  appstream  38 k
 perl-File-Temp              noarch 1:0.231.100-4.el9           appstream  63 k
 perl-File-stat              noarch 1.09-479.el9                appstream  27 k
 perl-Getopt-Long            noarch 1:2.52-4.el9                appstream  64 k
 perl-Getopt-Std             noarch 1.12-479.el9                appstream  26 k
 perl-HTTP-Tiny              noarch 0.076-460.el9               appstream  58 k
 perl-IO                     x86_64 1.43-479.el9                appstream 103 k
 perl-IPC-Open3              noarch 1.21-479.el9                appstream  34 k
 perl-MIME-Base64            x86_64 3.16-4.el9                  appstream  34 k
 perl-POSIX                  x86_64 1.94-479.el9                appstream 108 k
 perl-PathTools              x86_64 3.78-461.el9                appstream  92 k
 perl-Pod-Escapes            noarch 1:1.07-460.el9              appstream  22 k
 perl-Pod-Perldoc            noarch 3.28.01-461.el9             appstream  92 k
 perl-Pod-Simple             noarch 1:3.42-4.el9                appstream 229 k
 perl-Pod-Usage              noarch 4:2.01-4.el9                appstream  43 k
 perl-Scalar-List-Utils      x86_64 4:1.56-461.el9              appstream  77 k
 perl-SelectSaver            noarch 1.02-479.el9                appstream  22 k
 perl-Socket                 x86_64 4:2.031-4.el9               appstream  58 k
 perl-Storable               x86_64 1:3.21-460.el9              appstream  98 k
 perl-Symbol                 noarch 1.08-479.el9                appstream  24 k
 perl-Term-ANSIColor         noarch 5.01-461.el9                appstream  51 k
 perl-Term-Cap               noarch 1.17-460.el9                appstream  24 k
 perl-Text-ParseWords        noarch 3.30-460.el9                appstream  18 k
 perl-Text-Tabs+Wrap         noarch 2013.0523-460.el9           appstream  25 k
 perl-Time-Local             noarch 2:1.300-7.el9               appstream  37 k
 perl-constant               noarch 1.33-461.el9                appstream  25 k
 perl-if                     noarch 0.60.800-479.el9            appstream  24 k
 perl-interpreter            x86_64 4:5.32.1-479.el9            appstream  83 k
 perl-libs                   x86_64 4:5.32.1-479.el9            appstream 2.2 M
 perl-mro                    x86_64 1.23-479.el9                appstream  40 k
 perl-overload               noarch 1.31-479.el9                appstream  56 k
 perl-overloading            noarch 0.02-479.el9                appstream  23 k
 perl-parent                 noarch 1:0.238-460.el9             appstream  16 k
 perl-podlators              noarch 1:4.14-460.el9              appstream 118 k
 perl-srpm-macros            noarch 1-41.el9                    appstream 9.4 k
 perl-subs                   noarch 1.03-479.el9                appstream  22 k
 perl-vars                   noarch 1.05-479.el9                appstream  23 k
 pkgconf                     x86_64 1.7.3-9.el9                 baseos     45 k
 pkgconf-m4                  noarch 1.7.3-9.el9                 baseos     16 k
 pkgconf-pkg-config          x86_64 1.7.3-9.el9                 baseos     12 k
 popt                        x86_64 1.18-8.el9                  baseos     69 k
 publicsuffix-list-dafsa     noarch 20210518-3.el9              baseos     59 k
 python-srpm-macros          noarch 3.9-52.el9                  appstream  24 k
 qt5-srpm-macros             noarch 5.15.3-1.el9                appstream 9.9 k
 readline                    x86_64 8.1-4.el9                   baseos    215 k
 rpm                         x86_64 4.16.1.3-19.el9_1           baseos    542 k
 rpm-build-libs              x86_64 4.16.1.3-19.el9_1           baseos     92 k
 rpm-libs                    x86_64 4.16.1.3-19.el9_1           baseos    309 k
 rust-srpm-macros            noarch 17-4.el9                    appstream  11 k
 setup                       noarch 2.13.7-7.el9                baseos    150 k
 sqlite-libs                 x86_64 3.34.1-5.el9                baseos    623 k
 systemd-libs                x86_64 250-12.el9_1                baseos    638 k
 tzdata                      noarch 2022g-1.el9_1               baseos    839 k
 util-linux-core             x86_64 2.37.4-9.el9                baseos    465 k
 xz-libs                     x86_64 5.2.5-8.el9_0               baseos     94 k
 zip                         x86_64 3.0-33.el9                  baseos    242 k
 zlib                        x86_64 1.2.11-34.el9               baseos     93 k
 zstd                        x86_64 1.5.1-2.el9                 baseos    552 k

Transaction Summary
================================================================================
Install  185 Packages

Total size: 66 M
Installed size: 210 M
Downloading Packages:
[SKIPPED] pkgconf-1.7.3-9.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libpwquality-1.4.4-8.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libutempter-1.2.1-6.el9.x86_64.rpm: Already downloaded               
[SKIPPED] pkgconf-m4-1.7.3-9.el9.noarch.rpm: Already downloaded                
[SKIPPED] lz4-libs-1.9.3-5.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] bzip2-1.0.8-8.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] libcap-2.48-8.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] ncurses-6.2-8.20210508.el9.x86_64.rpm: Already downloaded            
[SKIPPED] ed-1.14.2-12.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] cyrus-sasl-lib-2.1.27-20.el9.x86_64.rpm: Already downloaded          
[SKIPPED] zip-3.0-33.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] libacl-2.3.1-3.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libcap-ng-0.8.2-7.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libnghttp2-1.43.0-5.el9.x86_64.rpm: Already downloaded               
[SKIPPED] filesystem-3.16-2.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libtasn1-4.16.0-7.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] pcre-8.44-3.el9.3.x86_64.rpm: Already downloaded                     
[SKIPPED] libssh-0.9.6-3.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] info-6.7-15.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] groff-base-1.22.4-10.el9.x86_64.rpm: Already downloaded              
[SKIPPED] unzip-6.0-56.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] sed-4.8-9.el9.x86_64.rpm: Already downloaded                         
[SKIPPED] ncurses-libs-6.2-8.20210508.el9.x86_64.rpm: Already downloaded       
[SKIPPED] grep-3.6-5.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] libunistring-0.9.10-15.el9.x86_64.rpm: Already downloaded            
[SKIPPED] basesystem-11-13.el9.noarch.rpm: Already downloaded                  
[SKIPPED] libssh-config-0.9.6-3.el9.noarch.rpm: Already downloaded             
[SKIPPED] libbrotli-1.0.9-6.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libverto-0.3.2-3.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] ncurses-base-6.2-8.20210508.el9.noarch.rpm: Already downloaded       
[SKIPPED] libxcrypt-4.4.18-3.el9.x86_64.rpm: Already downloaded                
[SKIPPED] keyutils-libs-1.6.1-4.el9.x86_64.rpm: Already downloaded             
[SKIPPED] mpfr-4.1.0-7.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] popt-1.18-8.el9.x86_64.rpm: Already downloaded                       
[SKIPPED] readline-8.1-4.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] cracklib-2.9.6-27.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libidn2-2.3.0-7.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] libevent-2.1.12-6.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] sqlite-libs-3.34.1-5.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libgpg-error-1.42-5.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libffi-3.4.2-7.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libzstd-1.5.1-2.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] p11-kit-0.24.1-2.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libpsl-0.21.1-5.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] publicsuffix-list-dafsa-20210518-3.el9.noarch.rpm: Already downloaded
[SKIPPED] libdb-5.3.28-53.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] gmp-6.2.0-10.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] libeconf-0.4.1-2.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libsigsegv-2.13-4.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] alternatives-1.20-2.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libattr-2.5.1-3.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] bzip2-libs-1.0.8-8.el9.x86_64.rpm: Already downloaded                
[SKIPPED] libpkgconf-1.7.3-9.el9.x86_64.rpm: Already downloaded                
[SKIPPED] cpio-2.13-16.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] findutils-4.8.0-5.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] pkgconf-pkg-config-1.7.3-9.el9.x86_64.rpm: Already downloaded        
[SKIPPED] coreutils-8.32-32.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] gdbm-libs-1.19-4.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libsmartcols-2.37.4-9.el9.x86_64.rpm: Already downloaded             
[SKIPPED] binutils-2.35.2-24.el9.x86_64.rpm: Already downloaded                
[SKIPPED] ca-certificates-2022.2.54-90.2.el9_0.noarch.rpm: Already downloaded  
[SKIPPED] libgcrypt-1.10.0-8.el9_0.x86_64.rpm: Already downloaded              
[SKIPPED] libgcc-11.3.1-2.1.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] cracklib-dicts-2.9.6-27.el9.x86_64.rpm: Already downloaded           
[SKIPPED] shadow-utils-4.9-5.el9.x86_64.rpm: Already downloaded                
[SKIPPED] xz-5.2.5-8.el9_0.x86_64.rpm: Already downloaded                      
[SKIPPED] glibc-2.34-40.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] zlib-1.2.11-34.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] lua-libs-5.4.2-4.el9_0.3.x86_64.rpm: Already downloaded              
[SKIPPED] binutils-gold-2.35.2-24.el9.x86_64.rpm: Already downloaded           
[SKIPPED] xz-libs-5.2.5-8.el9_0.x86_64.rpm: Already downloaded                 
[SKIPPED] curl-7.76.1-19.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] which-2.21-28.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] bash-5.1.8-5.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] p11-kit-trust-0.24.1-2.el9.x86_64.rpm: Already downloaded            
[SKIPPED] elfutils-debuginfod-client-0.187-5.el9.x86_64.rpm: Already downloaded
[SKIPPED] pcre2-syntax-10.40-2.el9.noarch.rpm: Already downloaded              
[SKIPPED] libfdisk-2.37.4-9.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] zstd-1.5.1-2.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] util-linux-core-2.37.4-9.el9.x86_64.rpm: Already downloaded          
[SKIPPED] libgomp-11.3.1-2.1.el9.x86_64.rpm: Already downloaded                
[SKIPPED] openssl-3.0.1-43.el9_0.x86_64.rpm: Already downloaded                
[SKIPPED] pam-1.5.1-12.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] diffutils-3.7-12.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] libxml2-2.9.13-2.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] elfutils-0.187-5.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] openssl-libs-3.0.1-43.el9_0.x86_64.rpm: Already downloaded           
[SKIPPED] gawk-5.1.0-6.el9.x86_64.rpm: Already downloaded                      
[SKIPPED] setup-2.13.7-7.el9.noarch.rpm: Already downloaded                    
[SKIPPED] glibc-gconv-extra-2.34-40.el9.x86_64.rpm: Already downloaded         
[SKIPPED] libcom_err-1.46.5-3.el9.x86_64.rpm: Already downloaded               
[SKIPPED] libselinux-3.4-3.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] glibc-common-2.34-40.el9.x86_64.rpm: Already downloaded              
[SKIPPED] pcre2-10.40-2.el9.x86_64.rpm: Already downloaded                     
[SKIPPED] glibc-minimal-langpack-2.34-40.el9.x86_64.rpm: Already downloaded    
[SKIPPED] libmount-2.37.4-9.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] libuuid-2.37.4-9.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] redhat-release-9.1-1.9.el9.x86_64.rpm: Already downloaded            
[SKIPPED] file-libs-5.39-10.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] openldap-2.6.2-3.el9.x86_64.rpm: Already downloaded                  
[SKIPPED] audit-libs-3.0.7-103.el9.x86_64.rpm: Already downloaded              
[SKIPPED] libsemanage-3.4-2.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] util-linux-2.37.4-9.el9.x86_64.rpm: Already downloaded               
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Red Hat Enterprise Linux - BaseOS               3.5 MB/s | 3.6 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Importing GPG key 0x5A6340B3:
 Userid     : "Red Hat, Inc. (auxiliary key 3) <security@redhat.com>"
 Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Extra Packages for Enterprise Linux 9 - x86_64  1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x3228467C:
 Userid     : "Fedora (epel9) <epel@fedoraproject.org>"
 Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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warning: /etc/hosts created as /etc/hosts.rpmnew

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  Installing       : libfdisk-2.37.4-9.el9.x86_64                       149/185 
  Installing       : openssl-1:3.0.1-43.el9_0.x86_64                    150/185 
  Installing       : pam-1.5.1-12.el9.x86_64                            151/185 
  Installing       : libpwquality-1.4.4-8.el9.x86_64                    152/185 
  Installing       : libevent-2.1.12-6.el9.x86_64                       153/185 
  Installing       : openldap-2.6.2-3.el9.x86_64                        154/185 
  Installing       : libarchive-3.5.3-3.el9.x86_64                      155/185 
  Installing       : libsemanage-3.4-2.el9.x86_64                       156/185 
  Installing       : shadow-utils-2:4.9-5.el9.x86_64                    157/185 
  Running scriptlet: libutempter-1.2.1-6.el9.x86_64                     158/185 
  Installing       : libutempter-1.2.1-6.el9.x86_64                     158/185 
  Installing       : tar-2:1.34-5.el9.x86_64                            159/185 
  Installing       : patch-2.7.6-16.el9.x86_64                          160/185 
  Installing       : libssh-config-0.9.6-3.el9.noarch                   161/185 
  Installing       : libssh-0.9.6-3.el9.x86_64                          162/185 
  Installing       : libcurl-7.76.1-19.el9.x86_64                       163/185 
  Installing       : elfutils-debuginfod-client-0.187-5.el9.x86_64      164/185 
  Installing       : binutils-gold-2.35.2-24.el9.x86_64                 165/185 
  Installing       : binutils-2.35.2-24.el9.x86_64                      166/185 
  Running scriptlet: binutils-2.35.2-24.el9.x86_64                      166/185 
  Installing       : elfutils-0.187-5.el9.x86_64                        167/185 
  Installing       : gdb-minimal-10.2-10.el9.x86_64                     168/185 
  Installing       : curl-7.76.1-19.el9.x86_64                          169/185 
  Installing       : rpm-libs-4.16.1.3-19.el9_1.x86_64                  170/185 
  Installing       : rpm-4.16.1.3-19.el9_1.x86_64                       171/185 
  Installing       : lua-srpm-macros-1-6.el9.noarch                     172/185 
  Installing       : efi-srpm-macros-6-2.el9_0.noarch                   173/185 
  Installing       : python-srpm-macros-3.9-52.el9.noarch               174/185 
  Installing       : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch           175/185 
  Installing       : go-srpm-macros-3.0.9-9.el9.noarch                  176/185 
  Installing       : redhat-rpm-config-196-1.el9.noarch                 177/185 
  Installing       : go-srpm-macros-epel-1-8.el9.noarch                 178/185 
  Installing       : rpm-build-libs-4.16.1.3-19.el9_1.x86_64            179/185 
  Installing       : pkgconf-m4-1.7.3-9.el9.noarch                      180/185 
  Installing       : pkgconf-pkg-config-1.7.3-9.el9.x86_64              181/185 
  Installing       : rpm-build-4.16.1.3-19.el9_1.x86_64                 182/185 
  Installing       : epel-rpm-macros-9-7.el9.noarch                     183/185 
  Installing       : util-linux-2.37.4-9.el9.x86_64                     184/185 
  Installing       : which-2.21-28.el9.x86_64                           185/185 
  Running scriptlet: filesystem-3.16-2.el9.x86_64                       185/185 
  Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch        185/185 
  Running scriptlet: rpm-4.16.1.3-19.el9_1.x86_64                       185/185 
  Running scriptlet: which-2.21-28.el9.x86_64                           185/185 
  Verifying        : pkgconf-1.7.3-9.el9.x86_64                           1/185 
  Verifying        : libpwquality-1.4.4-8.el9.x86_64                      2/185 
  Verifying        : libutempter-1.2.1-6.el9.x86_64                       3/185 
  Verifying        : pkgconf-m4-1.7.3-9.el9.noarch                        4/185 
  Verifying        : lz4-libs-1.9.3-5.el9.x86_64                          5/185 
  Verifying        : bzip2-1.0.8-8.el9.x86_64                             6/185 
  Verifying        : libcap-2.48-8.el9.x86_64                             7/185 
  Verifying        : ncurses-6.2-8.20210508.el9.x86_64                    8/185 
  Verifying        : ed-1.14.2-12.el9.x86_64                              9/185 
  Verifying        : cyrus-sasl-lib-2.1.27-20.el9.x86_64                 10/185 
  Verifying        : zip-3.0-33.el9.x86_64                               11/185 
  Verifying        : libacl-2.3.1-3.el9.x86_64                           12/185 
  Verifying        : libcap-ng-0.8.2-7.el9.x86_64                        13/185 
  Verifying        : libnghttp2-1.43.0-5.el9.x86_64                      14/185 
  Verifying        : filesystem-3.16-2.el9.x86_64                        15/185 
  Verifying        : libtasn1-4.16.0-7.el9.x86_64                        16/185 
  Verifying        : pcre-8.44-3.el9.3.x86_64                            17/185 
  Verifying        : libssh-0.9.6-3.el9.x86_64                           18/185 
  Verifying        : info-6.7-15.el9.x86_64                              19/185 
  Verifying        : groff-base-1.22.4-10.el9.x86_64                     20/185 
  Verifying        : unzip-6.0-56.el9.x86_64                             21/185 
  Verifying        : sed-4.8-9.el9.x86_64                                22/185 
  Verifying        : ncurses-libs-6.2-8.20210508.el9.x86_64              23/185 
  Verifying        : grep-3.6-5.el9.x86_64                               24/185 
  Verifying        : libunistring-0.9.10-15.el9.x86_64                   25/185 
  Verifying        : basesystem-11-13.el9.noarch                         26/185 
  Verifying        : libssh-config-0.9.6-3.el9.noarch                    27/185 
  Verifying        : libbrotli-1.0.9-6.el9.x86_64                        28/185 
  Verifying        : libverto-0.3.2-3.el9.x86_64                         29/185 
  Verifying        : ncurses-base-6.2-8.20210508.el9.noarch              30/185 
  Verifying        : libxcrypt-4.4.18-3.el9.x86_64                       31/185 
  Verifying        : keyutils-libs-1.6.1-4.el9.x86_64                    32/185 
  Verifying        : mpfr-4.1.0-7.el9.x86_64                             33/185 
  Verifying        : popt-1.18-8.el9.x86_64                              34/185 
  Verifying        : readline-8.1-4.el9.x86_64                           35/185 
  Verifying        : cracklib-2.9.6-27.el9.x86_64                        36/185 
  Verifying        : libidn2-2.3.0-7.el9.x86_64                          37/185 
  Verifying        : libevent-2.1.12-6.el9.x86_64                        38/185 
  Verifying        : sqlite-libs-3.34.1-5.el9.x86_64                     39/185 
  Verifying        : libgpg-error-1.42-5.el9.x86_64                      40/185 
  Verifying        : libffi-3.4.2-7.el9.x86_64                           41/185 
  Verifying        : libzstd-1.5.1-2.el9.x86_64                          42/185 
  Verifying        : p11-kit-0.24.1-2.el9.x86_64                         43/185 
  Verifying        : libpsl-0.21.1-5.el9.x86_64                          44/185 
  Verifying        : publicsuffix-list-dafsa-20210518-3.el9.noarch       45/185 
  Verifying        : libdb-5.3.28-53.el9.x86_64                          46/185 
  Verifying        : gmp-1:6.2.0-10.el9.x86_64                           47/185 
  Verifying        : libeconf-0.4.1-2.el9.x86_64                         48/185 
  Verifying        : libsigsegv-2.13-4.el9.x86_64                        49/185 
  Verifying        : alternatives-1.20-2.el9.x86_64                      50/185 
  Verifying        : libattr-2.5.1-3.el9.x86_64                          51/185 
  Verifying        : bzip2-libs-1.0.8-8.el9.x86_64                       52/185 
  Verifying        : libpkgconf-1.7.3-9.el9.x86_64                       53/185 
  Verifying        : cpio-2.13-16.el9.x86_64                             54/185 
  Verifying        : findutils-1:4.8.0-5.el9.x86_64                      55/185 
  Verifying        : pkgconf-pkg-config-1.7.3-9.el9.x86_64               56/185 
  Verifying        : coreutils-8.32-32.el9.x86_64                        57/185 
  Verifying        : gdbm-libs-1:1.19-4.el9.x86_64                       58/185 
  Verifying        : libsmartcols-2.37.4-9.el9.x86_64                    59/185 
  Verifying        : binutils-2.35.2-24.el9.x86_64                       60/185 
  Verifying        : ca-certificates-2022.2.54-90.2.el9_0.noarch         61/185 
  Verifying        : libgcrypt-1.10.0-8.el9_0.x86_64                     62/185 
  Verifying        : libgcc-11.3.1-2.1.el9.x86_64                        63/185 
  Verifying        : cracklib-dicts-2.9.6-27.el9.x86_64                  64/185 
  Verifying        : shadow-utils-2:4.9-5.el9.x86_64                     65/185 
  Verifying        : xz-5.2.5-8.el9_0.x86_64                             66/185 
  Verifying        : glibc-2.34-40.el9.x86_64                            67/185 
  Verifying        : zlib-1.2.11-34.el9.x86_64                           68/185 
  Verifying        : lua-libs-5.4.2-4.el9_0.3.x86_64                     69/185 
  Verifying        : binutils-gold-2.35.2-24.el9.x86_64                  70/185 
  Verifying        : xz-libs-5.2.5-8.el9_0.x86_64                        71/185 
  Verifying        : curl-7.76.1-19.el9.x86_64                           72/185 
  Verifying        : which-2.21-28.el9.x86_64                            73/185 
  Verifying        : bash-5.1.8-5.el9.x86_64                             74/185 
  Verifying        : p11-kit-trust-0.24.1-2.el9.x86_64                   75/185 
  Verifying        : elfutils-debuginfod-client-0.187-5.el9.x86_64       76/185 
  Verifying        : pcre2-syntax-10.40-2.el9.noarch                     77/185 
  Verifying        : libfdisk-2.37.4-9.el9.x86_64                        78/185 
  Verifying        : zstd-1.5.1-2.el9.x86_64                             79/185 
  Verifying        : util-linux-core-2.37.4-9.el9.x86_64                 80/185 
  Verifying        : libgomp-11.3.1-2.1.el9.x86_64                       81/185 
  Verifying        : openssl-1:3.0.1-43.el9_0.x86_64                     82/185 
  Verifying        : pam-1.5.1-12.el9.x86_64                             83/185 
  Verifying        : diffutils-3.7-12.el9.x86_64                         84/185 
  Verifying        : libxml2-2.9.13-2.el9.x86_64                         85/185 
  Verifying        : elfutils-0.187-5.el9.x86_64                         86/185 
  Verifying        : openssl-libs-1:3.0.1-43.el9_0.x86_64                87/185 
  Verifying        : gawk-5.1.0-6.el9.x86_64                             88/185 
  Verifying        : setup-2.13.7-7.el9.noarch                           89/185 
  Verifying        : glibc-gconv-extra-2.34-40.el9.x86_64                90/185 
  Verifying        : libcom_err-1.46.5-3.el9.x86_64                      91/185 
  Verifying        : libselinux-3.4-3.el9.x86_64                         92/185 
  Verifying        : glibc-common-2.34-40.el9.x86_64                     93/185 
  Verifying        : pcre2-10.40-2.el9.x86_64                            94/185 
  Verifying        : glibc-minimal-langpack-2.34-40.el9.x86_64           95/185 
  Verifying        : libmount-2.37.4-9.el9.x86_64                        96/185 
  Verifying        : libuuid-2.37.4-9.el9.x86_64                         97/185 
  Verifying        : redhat-release-9.1-1.9.el9.x86_64                   98/185 
  Verifying        : file-libs-5.39-10.el9.x86_64                        99/185 
  Verifying        : openldap-2.6.2-3.el9.x86_64                        100/185 
  Verifying        : audit-libs-3.0.7-103.el9.x86_64                    101/185 
  Verifying        : libsemanage-3.4-2.el9.x86_64                       102/185 
  Verifying        : util-linux-2.37.4-9.el9.x86_64                     103/185 
  Verifying        : systemd-libs-250-12.el9_1.x86_64                   104/185 
  Verifying        : elfutils-default-yama-scope-0.187-5.el9.noarch     105/185 
  Verifying        : libcurl-7.76.1-19.el9.x86_64                       106/185 
  Verifying        : libarchive-3.5.3-3.el9.x86_64                      107/185 
  Verifying        : elfutils-libelf-0.187-5.el9.x86_64                 108/185 
  Verifying        : crypto-policies-20220815-1.git0fbe86f.el9.noarch   109/185 
  Verifying        : libblkid-2.37.4-9.el9.x86_64                       110/185 
  Verifying        : file-5.39-10.el9.x86_64                            111/185 
  Verifying        : libsepol-3.4-1.1.el9.x86_64                        112/185 
  Verifying        : gzip-1.12-1.el9.x86_64                             113/185 
  Verifying        : elfutils-libs-0.187-5.el9.x86_64                   114/185 
  Verifying        : libstdc++-11.3.1-2.1.el9.x86_64                    115/185 
  Verifying        : coreutils-common-8.32-32.el9.x86_64                116/185 
  Verifying        : tar-2:1.34-5.el9.x86_64                            117/185 
  Verifying        : rpm-build-libs-4.16.1.3-19.el9_1.x86_64            118/185 
  Verifying        : rpm-libs-4.16.1.3-19.el9_1.x86_64                  119/185 
  Verifying        : rpm-4.16.1.3-19.el9_1.x86_64                       120/185 
  Verifying        : krb5-libs-1.19.1-24.el9_1.x86_64                   121/185 
  Verifying        : tzdata-2022g-1.el9_1.noarch                        122/185 
  Verifying        : perl-SelectSaver-1.02-479.el9.noarch               123/185 
  Verifying        : perl-subs-1.03-479.el9.noarch                      124/185 
  Verifying        : lua-srpm-macros-1-6.el9.noarch                     125/185 
  Verifying        : perl-File-stat-1.09-479.el9.noarch                 126/185 
  Verifying        : rust-srpm-macros-17-4.el9.noarch                   127/185 
  Verifying        : ghc-srpm-macros-1.5.0-6.el9.noarch                 128/185 
  Verifying        : perl-Pod-Simple-1:3.42-4.el9.noarch                129/185 
  Verifying        : perl-File-Basename-2.85-479.el9.noarch             130/185 
  Verifying        : perl-Term-Cap-1.17-460.el9.noarch                  131/185 
  Verifying        : perl-Encode-4:3.08-462.el9.x86_64                  132/185 
  Verifying        : perl-Time-Local-2:1.300-7.el9.noarch               133/185 
  Verifying        : perl-IPC-Open3-1.21-479.el9.noarch                 134/185 
  Verifying        : perl-libs-4:5.32.1-479.el9.x86_64                  135/185 
  Verifying        : perl-vars-1.05-479.el9.noarch                      136/185 
  Verifying        : perl-Pod-Escapes-1:1.07-460.el9.noarch             137/185 
  Verifying        : python-srpm-macros-3.9-52.el9.noarch               138/185 
  Verifying        : perl-podlators-1:4.14-460.el9.noarch               139/185 
  Verifying        : perl-Storable-1:3.21-460.el9.x86_64                140/185 
  Verifying        : perl-srpm-macros-1-41.el9.noarch                   141/185 
  Verifying        : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch       142/185 
  Verifying        : dwz-0.14-3.el9.x86_64                              143/185 
  Verifying        : perl-MIME-Base64-3.16-4.el9.x86_64                 144/185 
  Verifying        : perl-File-Temp-1:0.231.100-4.el9.noarch            145/185 
  Verifying        : perl-Exporter-5.74-461.el9.noarch                  146/185 
  Verifying        : perl-Symbol-1.08-479.el9.noarch                    147/185 
  Verifying        : perl-parent-1:0.238-460.el9.noarch                 148/185 
  Verifying        : perl-Getopt-Long-1:2.52-4.el9.noarch               149/185 
  Verifying        : perl-Socket-4:2.031-4.el9.x86_64                   150/185 
  Verifying        : kernel-srpm-macros-1.0-11.el9.noarch               151/185 
  Verifying        : perl-Getopt-Std-1.12-479.el9.noarch                152/185 
  Verifying        : openblas-srpm-macros-2-11.el9.noarch               153/185 
  Verifying        : perl-Term-ANSIColor-5.01-461.el9.noarch            154/185 
  Verifying        : perl-POSIX-1.94-479.el9.x86_64                     155/185 
  Verifying        : perl-Scalar-List-Utils-4:1.56-461.el9.x86_64       156/185 
  Verifying        : perl-overload-1.31-479.el9.noarch                  157/185 
  Verifying        : perl-constant-1.33-461.el9.noarch                  158/185 
  Verifying        : perl-File-Path-2.18-4.el9.noarch                   159/185 
  Verifying        : perl-if-0.60.800-479.el9.noarch                    160/185 
  Verifying        : efi-srpm-macros-6-2.el9_0.noarch                   161/185 
  Verifying        : perl-Text-ParseWords-3.30-460.el9.noarch           162/185 
  Verifying        : perl-HTTP-Tiny-0.076-460.el9.noarch                163/185 
  Verifying        : perl-Pod-Usage-4:2.01-4.el9.noarch                 164/185 
  Verifying        : patch-2.7.6-16.el9.x86_64                          165/185 
  Verifying        : perl-Pod-Perldoc-3.28.01-461.el9.noarch            166/185 
  Verifying        : perl-Class-Struct-0.66-479.el9.noarch              167/185 
  Verifying        : perl-overloading-0.02-479.el9.noarch               168/185 
  Verifying        : perl-interpreter-4:5.32.1-479.el9.x86_64           169/185 
  Verifying        : perl-IO-1.43-479.el9.x86_64                        170/185 
  Verifying        : perl-Fcntl-1.13-479.el9.x86_64                     171/185 
  Verifying        : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch           172/185 
  Verifying        : ocaml-srpm-macros-6-6.el9.noarch                   173/185 
  Verifying        : perl-mro-1.23-479.el9.x86_64                       174/185 
  Verifying        : perl-Errno-1.30-479.el9.x86_64                     175/185 
  Verifying        : perl-Carp-1.50-460.el9.noarch                      176/185 
  Verifying        : go-srpm-macros-3.0.9-9.el9.noarch                  177/185 
  Verifying        : perl-PathTools-3.78-461.el9.x86_64                 178/185 
  Verifying        : qt5-srpm-macros-5.15.3-1.el9.noarch                179/185 
  Verifying        : gdb-minimal-10.2-10.el9.x86_64                     180/185 
  Verifying        : redhat-rpm-config-196-1.el9.noarch                 181/185 
  Verifying        : rpm-build-4.16.1.3-19.el9_1.x86_64                 182/185 
  Verifying        : ansible-srpm-macros-1-8.1.el9.noarch               183/185 
  Verifying        : epel-rpm-macros-9-7.el9.noarch                     184/185 
  Verifying        : go-srpm-macros-epel-1-8.el9.noarch                 185/185 
Installed products updated.

Installed:
  alternatives-1.20-2.el9.x86_64                                                
  ansible-srpm-macros-1-8.1.el9.noarch                                          
  audit-libs-3.0.7-103.el9.x86_64                                               
  basesystem-11-13.el9.noarch                                                   
  bash-5.1.8-5.el9.x86_64                                                       
  binutils-2.35.2-24.el9.x86_64                                                 
  binutils-gold-2.35.2-24.el9.x86_64                                            
  bzip2-1.0.8-8.el9.x86_64                                                      
  bzip2-libs-1.0.8-8.el9.x86_64                                                 
  ca-certificates-2022.2.54-90.2.el9_0.noarch                                   
  coreutils-8.32-32.el9.x86_64                                                  
  coreutils-common-8.32-32.el9.x86_64                                           
  cpio-2.13-16.el9.x86_64                                                       
  cracklib-2.9.6-27.el9.x86_64                                                  
  cracklib-dicts-2.9.6-27.el9.x86_64                                            
  crypto-policies-20220815-1.git0fbe86f.el9.noarch                              
  curl-7.76.1-19.el9.x86_64                                                     
  cyrus-sasl-lib-2.1.27-20.el9.x86_64                                           
  diffutils-3.7-12.el9.x86_64                                                   
  dwz-0.14-3.el9.x86_64                                                         
  ed-1.14.2-12.el9.x86_64                                                       
  efi-srpm-macros-6-2.el9_0.noarch                                              
  elfutils-0.187-5.el9.x86_64                                                   
  elfutils-debuginfod-client-0.187-5.el9.x86_64                                 
  elfutils-default-yama-scope-0.187-5.el9.noarch                                
  elfutils-libelf-0.187-5.el9.x86_64                                            
  elfutils-libs-0.187-5.el9.x86_64                                              
  epel-rpm-macros-9-7.el9.noarch                                                
  file-5.39-10.el9.x86_64                                                       
  file-libs-5.39-10.el9.x86_64                                                  
  filesystem-3.16-2.el9.x86_64                                                  
  findutils-1:4.8.0-5.el9.x86_64                                                
  fonts-srpm-macros-1:2.0.5-7.el9.1.noarch                                      
  gawk-5.1.0-6.el9.x86_64                                                       
  gdb-minimal-10.2-10.el9.x86_64                                                
  gdbm-libs-1:1.19-4.el9.x86_64                                                 
  ghc-srpm-macros-1.5.0-6.el9.noarch                                            
  glibc-2.34-40.el9.x86_64                                                      
  glibc-common-2.34-40.el9.x86_64                                               
  glibc-gconv-extra-2.34-40.el9.x86_64                                          
  glibc-minimal-langpack-2.34-40.el9.x86_64                                     
  gmp-1:6.2.0-10.el9.x86_64                                                     
  go-srpm-macros-3.0.9-9.el9.noarch                                             
  go-srpm-macros-epel-1-8.el9.noarch                                            
  grep-3.6-5.el9.x86_64                                                         
  groff-base-1.22.4-10.el9.x86_64                                               
  gzip-1.12-1.el9.x86_64                                                        
  info-6.7-15.el9.x86_64                                                        
  kernel-srpm-macros-1.0-11.el9.noarch                                          
  keyutils-libs-1.6.1-4.el9.x86_64                                              
  krb5-libs-1.19.1-24.el9_1.x86_64                                              
  libacl-2.3.1-3.el9.x86_64                                                     
  libarchive-3.5.3-3.el9.x86_64                                                 
  libattr-2.5.1-3.el9.x86_64                                                    
  libblkid-2.37.4-9.el9.x86_64                                                  
  libbrotli-1.0.9-6.el9.x86_64                                                  
  libcap-2.48-8.el9.x86_64                                                      
  libcap-ng-0.8.2-7.el9.x86_64                                                  
  libcom_err-1.46.5-3.el9.x86_64                                                
  libcurl-7.76.1-19.el9.x86_64                                                  
  libdb-5.3.28-53.el9.x86_64                                                    
  libeconf-0.4.1-2.el9.x86_64                                                   
  libevent-2.1.12-6.el9.x86_64                                                  
  libfdisk-2.37.4-9.el9.x86_64                                                  
  libffi-3.4.2-7.el9.x86_64                                                     
  libgcc-11.3.1-2.1.el9.x86_64                                                  
  libgcrypt-1.10.0-8.el9_0.x86_64                                               
  libgomp-11.3.1-2.1.el9.x86_64                                                 
  libgpg-error-1.42-5.el9.x86_64                                                
  libidn2-2.3.0-7.el9.x86_64                                                    
  libmount-2.37.4-9.el9.x86_64                                                  
  libnghttp2-1.43.0-5.el9.x86_64                                                
  libpkgconf-1.7.3-9.el9.x86_64                                                 
  libpsl-0.21.1-5.el9.x86_64                                                    
  libpwquality-1.4.4-8.el9.x86_64                                               
  libselinux-3.4-3.el9.x86_64                                                   
  libsemanage-3.4-2.el9.x86_64                                                  
  libsepol-3.4-1.1.el9.x86_64                                                   
  libsigsegv-2.13-4.el9.x86_64                                                  
  libsmartcols-2.37.4-9.el9.x86_64                                              
  libssh-0.9.6-3.el9.x86_64                                                     
  libssh-config-0.9.6-3.el9.noarch                                              
  libstdc++-11.3.1-2.1.el9.x86_64                                               
  libtasn1-4.16.0-7.el9.x86_64                                                  
  libunistring-0.9.10-15.el9.x86_64                                             
  libutempter-1.2.1-6.el9.x86_64                                                
  libuuid-2.37.4-9.el9.x86_64                                                   
  libverto-0.3.2-3.el9.x86_64                                                   
  libxcrypt-4.4.18-3.el9.x86_64                                                 
  libxml2-2.9.13-2.el9.x86_64                                                   
  libzstd-1.5.1-2.el9.x86_64                                                    
  lua-libs-5.4.2-4.el9_0.3.x86_64                                               
  lua-srpm-macros-1-6.el9.noarch                                                
  lz4-libs-1.9.3-5.el9.x86_64                                                   
  mpfr-4.1.0-7.el9.x86_64                                                       
  ncurses-6.2-8.20210508.el9.x86_64                                             
  ncurses-base-6.2-8.20210508.el9.noarch                                        
  ncurses-libs-6.2-8.20210508.el9.x86_64                                        
  ocaml-srpm-macros-6-6.el9.noarch                                              
  openblas-srpm-macros-2-11.el9.noarch                                          
  openldap-2.6.2-3.el9.x86_64                                                   
  openssl-1:3.0.1-43.el9_0.x86_64                                               
  openssl-libs-1:3.0.1-43.el9_0.x86_64                                          
  p11-kit-0.24.1-2.el9.x86_64                                                   
  p11-kit-trust-0.24.1-2.el9.x86_64                                             
  pam-1.5.1-12.el9.x86_64                                                       
  patch-2.7.6-16.el9.x86_64                                                     
  pcre-8.44-3.el9.3.x86_64                                                      
  pcre2-10.40-2.el9.x86_64                                                      
  pcre2-syntax-10.40-2.el9.noarch                                               
  perl-Carp-1.50-460.el9.noarch                                                 
  perl-Class-Struct-0.66-479.el9.noarch                                         
  perl-Encode-4:3.08-462.el9.x86_64                                             
  perl-Errno-1.30-479.el9.x86_64                                                
  perl-Exporter-5.74-461.el9.noarch                                             
  perl-Fcntl-1.13-479.el9.x86_64                                                
  perl-File-Basename-2.85-479.el9.noarch                                        
  perl-File-Path-2.18-4.el9.noarch                                              
  perl-File-Temp-1:0.231.100-4.el9.noarch                                       
  perl-File-stat-1.09-479.el9.noarch                                            
  perl-Getopt-Long-1:2.52-4.el9.noarch                                          
  perl-Getopt-Std-1.12-479.el9.noarch                                           
  perl-HTTP-Tiny-0.076-460.el9.noarch                                           
  perl-IO-1.43-479.el9.x86_64                                                   
  perl-IPC-Open3-1.21-479.el9.noarch                                            
  perl-MIME-Base64-3.16-4.el9.x86_64                                            
  perl-POSIX-1.94-479.el9.x86_64                                                
  perl-PathTools-3.78-461.el9.x86_64                                            
  perl-Pod-Escapes-1:1.07-460.el9.noarch                                        
  perl-Pod-Perldoc-3.28.01-461.el9.noarch                                       
  perl-Pod-Simple-1:3.42-4.el9.noarch                                           
  perl-Pod-Usage-4:2.01-4.el9.noarch                                            
  perl-Scalar-List-Utils-4:1.56-461.el9.x86_64                                  
  perl-SelectSaver-1.02-479.el9.noarch                                          
  perl-Socket-4:2.031-4.el9.x86_64                                              
  perl-Storable-1:3.21-460.el9.x86_64                                           
  perl-Symbol-1.08-479.el9.noarch                                               
  perl-Term-ANSIColor-5.01-461.el9.noarch                                       
  perl-Term-Cap-1.17-460.el9.noarch                                             
  perl-Text-ParseWords-3.30-460.el9.noarch                                      
  perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch                                  
  perl-Time-Local-2:1.300-7.el9.noarch                                          
  perl-constant-1.33-461.el9.noarch                                             
  perl-if-0.60.800-479.el9.noarch                                               
  perl-interpreter-4:5.32.1-479.el9.x86_64                                      
  perl-libs-4:5.32.1-479.el9.x86_64                                             
  perl-mro-1.23-479.el9.x86_64                                                  
  perl-overload-1.31-479.el9.noarch                                             
  perl-overloading-0.02-479.el9.noarch                                          
  perl-parent-1:0.238-460.el9.noarch                                            
  perl-podlators-1:4.14-460.el9.noarch                                          
  perl-srpm-macros-1-41.el9.noarch                                              
  perl-subs-1.03-479.el9.noarch                                                 
  perl-vars-1.05-479.el9.noarch                                                 
  pkgconf-1.7.3-9.el9.x86_64                                                    
  pkgconf-m4-1.7.3-9.el9.noarch                                                 
  pkgconf-pkg-config-1.7.3-9.el9.x86_64                                         
  popt-1.18-8.el9.x86_64                                                        
  publicsuffix-list-dafsa-20210518-3.el9.noarch                                 
  python-srpm-macros-3.9-52.el9.noarch                                          
  qt5-srpm-macros-5.15.3-1.el9.noarch                                           
  readline-8.1-4.el9.x86_64                                                     
  redhat-release-9.1-1.9.el9.x86_64                                             
  redhat-rpm-config-196-1.el9.noarch                                            
  rpm-4.16.1.3-19.el9_1.x86_64                                                  
  rpm-build-4.16.1.3-19.el9_1.x86_64                                            
  rpm-build-libs-4.16.1.3-19.el9_1.x86_64                                       
  rpm-libs-4.16.1.3-19.el9_1.x86_64                                             
  rust-srpm-macros-17-4.el9.noarch                                              
  sed-4.8-9.el9.x86_64                                                          
  setup-2.13.7-7.el9.noarch                                                     
  shadow-utils-2:4.9-5.el9.x86_64                                               
  sqlite-libs-3.34.1-5.el9.x86_64                                               
  systemd-libs-250-12.el9_1.x86_64                                              
  tar-2:1.34-5.el9.x86_64                                                       
  tzdata-2022g-1.el9_1.noarch                                                   
  unzip-6.0-56.el9.x86_64                                                       
  util-linux-2.37.4-9.el9.x86_64                                                
  util-linux-core-2.37.4-9.el9.x86_64                                           
  which-2.21-28.el9.x86_64                                                      
  xz-5.2.5-8.el9_0.x86_64                                                       
  xz-libs-5.2.5-8.el9_0.x86_64                                                  
  zip-3.0-33.el9.x86_64                                                         
  zlib-1.2.11-34.el9.x86_64                                                     
  zstd-1.5.1-2.el9.x86_64                                                       

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: sed-4.8-9.el9.x86_64
perl-Term-Cap-1.17-460.el9.noarch
systemd-libs-250-12.el9_1.x86_64
libxcrypt-4.4.18-3.el9.x86_64
libarchive-3.5.3-3.el9.x86_64
perl-POSIX-1.94-479.el9.x86_64
libidn2-2.3.0-7.el9.x86_64
perl-Time-Local-1.300-7.el9.noarch
qt5-srpm-macros-5.15.3-1.el9.noarch
perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch
zstd-1.5.1-2.el9.x86_64
perl-Getopt-Std-1.12-479.el9.noarch
perl-interpreter-5.32.1-479.el9.x86_64
libbrotli-1.0.9-6.el9.x86_64
libselinux-3.4-3.el9.x86_64
efi-srpm-macros-6-2.el9_0.noarch
libutempter-1.2.1-6.el9.x86_64
ansible-srpm-macros-1-8.1.el9.noarch
ca-certificates-2022.2.54-90.2.el9_0.noarch
perl-srpm-macros-1-41.el9.noarch
shadow-utils-4.9-5.el9.x86_64
xz-5.2.5-8.el9_0.x86_64
libstdc++-11.3.1-2.1.el9.x86_64
groff-base-1.22.4-10.el9.x86_64
pcre-8.44-3.el9.3.x86_64
perl-File-Basename-2.85-479.el9.noarch
libssh-config-0.9.6-3.el9.noarch
libsepol-3.4-1.1.el9.x86_64
ocaml-srpm-macros-6-6.el9.noarch
perl-File-stat-1.09-479.el9.noarch
cracklib-2.9.6-27.el9.x86_64
libzstd-1.5.1-2.el9.x86_64
libacl-2.3.1-3.el9.x86_64
perl-PathTools-3.78-461.el9.x86_64
redhat-rpm-config-196-1.el9.noarch
libcap-ng-0.8.2-7.el9.x86_64
perl-overload-1.31-479.el9.noarch
glibc-gconv-extra-2.34-40.el9.x86_64
perl-Text-ParseWords-3.30-460.el9.noarch
patch-2.7.6-16.el9.x86_64
findutils-4.8.0-5.el9.x86_64
pkgconf-1.7.3-9.el9.x86_64
rpm-4.16.1.3-19.el9_1.x86_64
libeconf-0.4.1-2.el9.x86_64
openblas-srpm-macros-2-11.el9.noarch
perl-Class-Struct-0.66-479.el9.noarch
lua-libs-5.4.2-4.el9_0.3.x86_64
cracklib-dicts-2.9.6-27.el9.x86_64
zlib-1.2.11-34.el9.x86_64
perl-Pod-Usage-2.01-4.el9.noarch
rpm-build-libs-4.16.1.3-19.el9_1.x86_64
ghc-srpm-macros-1.5.0-6.el9.noarch
lz4-libs-1.9.3-5.el9.x86_64
alternatives-1.20-2.el9.x86_64
elfutils-default-yama-scope-0.187-5.el9.noarch
mpfr-4.1.0-7.el9.x86_64
file-5.39-10.el9.x86_64
perl-Carp-1.50-460.el9.noarch
openssl-libs-3.0.1-43.el9_0.x86_64
binutils-gold-2.35.2-24.el9.x86_64
libgomp-11.3.1-2.1.el9.x86_64
glibc-minimal-langpack-2.34-40.el9.x86_64
perl-IPC-Open3-1.21-479.el9.noarch
openldap-2.6.2-3.el9.x86_64
p11-kit-trust-0.24.1-2.el9.x86_64
util-linux-core-2.37.4-9.el9.x86_64
tzdata-2022g-1.el9_1.noarch
lua-srpm-macros-1-6.el9.noarch
coreutils-8.32-32.el9.x86_64
sqlite-libs-3.34.1-5.el9.x86_64
libmount-2.37.4-9.el9.x86_64
dwz-0.14-3.el9.x86_64
ncurses-6.2-8.20210508.el9.x86_64
perl-Scalar-List-Utils-1.56-461.el9.x86_64
gzip-1.12-1.el9.x86_64
perl-libs-5.32.1-479.el9.x86_64
xz-libs-5.2.5-8.el9_0.x86_64
perl-constant-1.33-461.el9.noarch
gmp-6.2.0-10.el9.x86_64
binutils-2.35.2-24.el9.x86_64
perl-mro-1.23-479.el9.x86_64
libgpg-error-1.42-5.el9.x86_64
libsemanage-3.4-2.el9.x86_64
libevent-2.1.12-6.el9.x86_64
libblkid-2.37.4-9.el9.x86_64
filesystem-3.16-2.el9.x86_64
perl-IO-1.43-479.el9.x86_64
libattr-2.5.1-3.el9.x86_64
gdbm-libs-1.19-4.el9.x86_64
crypto-policies-20220815-1.git0fbe86f.el9.noarch
libfdisk-2.37.4-9.el9.x86_64
perl-Term-ANSIColor-5.01-461.el9.noarch
libsmartcols-2.37.4-9.el9.x86_64
keyutils-libs-1.6.1-4.el9.x86_64
perl-Getopt-Long-2.52-4.el9.noarch
popt-1.18-8.el9.x86_64
zip-3.0-33.el9.x86_64
redhat-release-9.1-1.9.el9.x86_64
audit-libs-3.0.7-103.el9.x86_64
python-srpm-macros-3.9-52.el9.noarch
coreutils-common-8.32-32.el9.x86_64
diffutils-3.7-12.el9.x86_64
elfutils-debuginfod-client-0.187-5.el9.x86_64
pcre2-syntax-10.40-2.el9.noarch
rpm-build-4.16.1.3-19.el9_1.x86_64
gpg-pubkey-fd431d51-4ae0493b
curl-7.76.1-19.el9.x86_64
perl-Pod-Perldoc-3.28.01-461.el9.noarch
bzip2-1.0.8-8.el9.x86_64
bzip2-libs-1.0.8-8.el9.x86_64
go-srpm-macros-3.0.9-9.el9.noarch
ed-1.14.2-12.el9.x86_64
libgcc-11.3.1-2.1.el9.x86_64
libsigsegv-2.13-4.el9.x86_64
tar-1.34-5.el9.x86_64
libpsl-0.21.1-5.el9.x86_64
perl-Storable-3.21-460.el9.x86_64
libuuid-2.37.4-9.el9.x86_64
which-2.21-28.el9.x86_64
libdb-5.3.28-53.el9.x86_64
perl-HTTP-Tiny-0.076-460.el9.noarch
gawk-5.1.0-6.el9.x86_64
pam-1.5.1-12.el9.x86_64
ncurses-libs-6.2-8.20210508.el9.x86_64
pkgconf-pkg-config-1.7.3-9.el9.x86_64
pkgconf-m4-1.7.3-9.el9.noarch
libpkgconf-1.7.3-9.el9.x86_64
bash-5.1.8-5.el9.x86_64
p11-kit-0.24.1-2.el9.x86_64
libcurl-7.76.1-19.el9.x86_64
perl-Errno-1.30-479.el9.x86_64
elfutils-0.187-5.el9.x86_64
libxml2-2.9.13-2.el9.x86_64
perl-podlators-4.14-460.el9.noarch
readline-8.1-4.el9.x86_64
libverto-0.3.2-3.el9.x86_64
perl-Fcntl-1.13-479.el9.x86_64
basesystem-11-13.el9.noarch
openssl-3.0.1-43.el9_0.x86_64
ncurses-base-6.2-8.20210508.el9.noarch
libssh-0.9.6-3.el9.x86_64
file-libs-5.39-10.el9.x86_64
gpg-pubkey-3228467c-613798eb
epel-rpm-macros-9-7.el9.noarch
fonts-srpm-macros-2.0.5-7.el9.1.noarch
perl-File-Temp-0.231.100-4.el9.noarch
libunistring-0.9.10-15.el9.x86_64
perl-Pod-Escapes-1.07-460.el9.noarch
perl-parent-0.238-460.el9.noarch
perl-subs-1.03-479.el9.noarch
libffi-3.4.2-7.el9.x86_64
perl-SelectSaver-1.02-479.el9.noarch
setup-2.13.7-7.el9.noarch
kernel-srpm-macros-1.0-11.el9.noarch
glibc-2.34-40.el9.x86_64
libgcrypt-1.10.0-8.el9_0.x86_64
perl-Symbol-1.08-479.el9.noarch
elfutils-libs-0.187-5.el9.x86_64
perl-File-Path-2.18-4.el9.noarch
rpm-libs-4.16.1.3-19.el9_1.x86_64
perl-vars-1.05-479.el9.noarch
glibc-common-2.34-40.el9.x86_64
perl-overloading-0.02-479.el9.noarch
perl-Socket-2.031-4.el9.x86_64
elfutils-libelf-0.187-5.el9.x86_64
perl-Exporter-5.74-461.el9.noarch
rust-srpm-macros-17-4.el9.noarch
grep-3.6-5.el9.x86_64
pcre2-10.40-2.el9.x86_64
util-linux-2.37.4-9.el9.x86_64
perl-Pod-Simple-3.42-4.el9.noarch
libnghttp2-1.43.0-5.el9.x86_64
cyrus-sasl-lib-2.1.27-20.el9.x86_64
perl-Encode-3.08-462.el9.x86_64
perl-if-0.60.800-479.el9.noarch
perl-MIME-Base64-3.16-4.el9.x86_64
go-srpm-macros-epel-1-8.el9.noarch
krb5-libs-1.19.1-24.el9_1.x86_64
libtasn1-4.16.0-7.el9.x86_64
info-6.7-15.el9.x86_64
publicsuffix-list-dafsa-20210518-3.el9.noarch
unzip-6.0-56.el9.x86_64
cpio-2.13-16.el9.x86_64
libcom_err-1.46.5-3.el9.x86_64
gdb-minimal-10.2-10.el9.x86_64
libpwquality-1.4.4-8.el9.x86_64
gpg-pubkey-5a6340b3-6229229e
libcap-2.48-8.el9.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1651708800
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.el9.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-9j5u4dlt/samtools/samtools.spec) Config(child) 0 minutes 56 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el9.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674274465.014553 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el9.src.rpm)  Config(rhel+epel-9-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1674274465.014553/root.
INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1674274465.014553/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

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Copr repository                                  37 kB/s | 3.6 kB     00:00    
Additional repo copr_aminasyan_el9_collection    40 kB/s | 3.6 kB     00:00    
Additional repo http_mirror_stream_centos_org_S  19 kB/s | 3.0 kB     00:00    
Red Hat Enterprise Linux - BaseOS                10 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             17 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  15 kB/s | 4.0 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  299 kB/s |  28 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for samtools-1.15.1-3.el9.src.rpm
Start: build setup for samtools-1.15.1-3.el9.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1651708800
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.el9.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
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Copr repository                                  39 kB/s | 3.6 kB     00:00    
Additional repo copr_aminasyan_el9_collection    39 kB/s | 3.6 kB     00:00    
Additional repo http_mirror_stream_centos_org_S  28 kB/s | 3.0 kB     00:00    
Red Hat Enterprise Linux - BaseOS                16 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             19 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  13 kB/s | 4.0 kB     00:00    
Extra Packages for Enterprise Linux 9 - x86_64  279 kB/s |  28 kB     00:00    
Package perl-Getopt-Long-1:2.52-4.el9.noarch is already installed.
Package perl-interpreter-4:5.32.1-479.el9.x86_64 is already installed.
Dependencies resolved.
================================================================================
 Package               Arch      Version                     Repository    Size
================================================================================
Installing:
 gcc                   x86_64    11.3.1-2.1.el9              appstream     32 M
 htslib-devel          x86_64    1.15.1-1.el9                copr_base    100 k
 htslib-tools          x86_64    1.15.1-1.el9                copr_base    528 k
 ncurses-devel         x86_64    6.2-8.20210508.el9          appstream    733 k
 perl-FindBin          noarch    1.51-479.el9                appstream     24 k
 perl-lib              x86_64    0.65-479.el9                appstream     25 k
 zlib-devel            x86_64    1.2.11-34.el9               appstream     47 k
Installing dependencies:
 annobin               x86_64    10.73-3.el9                 appstream    965 k
 cpp                   x86_64    11.3.1-2.1.el9              appstream     11 M
 gcc-plugin-annobin    x86_64    11.3.1-2.1.el9              appstream     70 k
 glibc-devel           x86_64    2.34-40.el9                 appstream     47 k
 glibc-headers         x86_64    2.34-40.el9                 appstream    547 k
 htslib                x86_64    1.15.1-1.el9                copr_base    480 k
 kernel-headers        x86_64    5.14.0-162.6.1.el9_1        appstream    3.4 M
 libedit               x86_64    3.1-37.20210216cvs.el9      baseos       108 k
 libmpc                x86_64    1.2.1-4.el9                 appstream     65 k
 libxcrypt-devel       x86_64    4.4.18-3.el9                appstream     32 k
 llvm-libs             x86_64    14.0.6-1.el9                appstream     20 M
 make                  x86_64    1:4.3-7.el9                 baseos       542 k
 ncurses-c++-libs      x86_64    6.2-8.20210508.el9          appstream     40 k

Transaction Summary
================================================================================
Install  20 Packages

Total size: 71 M
Total download size: 1.8 M
Installed size: 214 M
Downloading Packages:
[SKIPPED] make-4.3-7.el9.x86_64.rpm: Already downloaded                        
[SKIPPED] libedit-3.1-37.20210216cvs.el9.x86_64.rpm: Already downloaded        
[SKIPPED] perl-FindBin-1.51-479.el9.noarch.rpm: Already downloaded             
[SKIPPED] libmpc-1.2.1-4.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] libxcrypt-devel-4.4.18-3.el9.x86_64.rpm: Already downloaded          
[SKIPPED] perl-lib-0.65-479.el9.x86_64.rpm: Already downloaded                 
[SKIPPED] annobin-10.73-3.el9.x86_64.rpm: Already downloaded                   
[SKIPPED] glibc-headers-2.34-40.el9.x86_64.rpm: Already downloaded             
[SKIPPED] gcc-plugin-annobin-11.3.1-2.1.el9.x86_64.rpm: Already downloaded     
[SKIPPED] glibc-devel-2.34-40.el9.x86_64.rpm: Already downloaded               
[SKIPPED] kernel-headers-5.14.0-162.6.1.el9_1.x86_64.rpm: Already downloaded   
[SKIPPED] cpp-11.3.1-2.1.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] gcc-11.3.1-2.1.el9.x86_64.rpm: Already downloaded                    
[SKIPPED] llvm-libs-14.0.6-1.el9.x86_64.rpm: Already downloaded                
[SKIPPED] zlib-devel-1.2.11-34.el9.x86_64.rpm: Already downloaded              
(16/20): htslib-tools-1.15.1-1.el9.x86_64.rpm   2.0 MB/s | 528 kB     00:00    
(17/20): htslib-1.15.1-1.el9.x86_64.rpm         1.8 MB/s | 480 kB     00:00    
(18/20): htslib-devel-1.15.1-1.el9.x86_64.rpm   299 kB/s | 100 kB     00:00    
(19/20): ncurses-c++-libs-6.2-8.20210508.el9.x8 141 kB/s |  40 kB     00:00    
(20/20): ncurses-devel-6.2-8.20210508.el9.x86_6 1.7 MB/s | 733 kB     00:00    
--------------------------------------------------------------------------------
Total                                           2.4 MB/s | 1.8 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : libmpc-1.2.1-4.el9.x86_64                             1/20 
  Installing       : htslib-1.15.1-1.el9.x86_64                            2/20 
  Installing       : cpp-11.3.1-2.1.el9.x86_64                             3/20 
  Installing       : kernel-headers-5.14.0-162.6.1.el9_1.x86_64            4/20 
  Installing       : glibc-headers-2.34-40.el9.x86_64                      5/20 
  Installing       : glibc-devel-2.34-40.el9.x86_64                        6/20 
  Installing       : libxcrypt-devel-4.4.18-3.el9.x86_64                   7/20 
  Installing       : ncurses-c++-libs-6.2-8.20210508.el9.x86_64            8/20 
  Installing       : libedit-3.1-37.20210216cvs.el9.x86_64                 9/20 
  Installing       : llvm-libs-14.0.6-1.el9.x86_64                        10/20 
  Installing       : make-1:4.3-7.el9.x86_64                              11/20 
  Installing       : gcc-11.3.1-2.1.el9.x86_64                            12/20 
  Installing       : annobin-10.73-3.el9.x86_64                           13/20 
  Running scriptlet: annobin-10.73-3.el9.x86_64                           13/20 
  Installing       : gcc-plugin-annobin-11.3.1-2.1.el9.x86_64             14/20 
  Running scriptlet: gcc-plugin-annobin-11.3.1-2.1.el9.x86_64             14/20 
  Installing       : ncurses-devel-6.2-8.20210508.el9.x86_64              15/20 
  Installing       : htslib-devel-1.15.1-1.el9.x86_64                     16/20 
  Installing       : htslib-tools-1.15.1-1.el9.x86_64                     17/20 
  Installing       : zlib-devel-1.2.11-34.el9.x86_64                      18/20 
  Installing       : perl-lib-0.65-479.el9.x86_64                         19/20 
  Installing       : perl-FindBin-1.51-479.el9.noarch                     20/20 
  Running scriptlet: perl-FindBin-1.51-479.el9.noarch                     20/20 
  Verifying        : htslib-1.15.1-1.el9.x86_64                            1/20 
  Verifying        : htslib-devel-1.15.1-1.el9.x86_64                      2/20 
  Verifying        : htslib-tools-1.15.1-1.el9.x86_64                      3/20 
  Verifying        : make-1:4.3-7.el9.x86_64                               4/20 
  Verifying        : libedit-3.1-37.20210216cvs.el9.x86_64                 5/20 
  Verifying        : perl-FindBin-1.51-479.el9.noarch                      6/20 
  Verifying        : ncurses-c++-libs-6.2-8.20210508.el9.x86_64            7/20 
  Verifying        : libmpc-1.2.1-4.el9.x86_64                             8/20 
  Verifying        : ncurses-devel-6.2-8.20210508.el9.x86_64               9/20 
  Verifying        : libxcrypt-devel-4.4.18-3.el9.x86_64                  10/20 
  Verifying        : perl-lib-0.65-479.el9.x86_64                         11/20 
  Verifying        : annobin-10.73-3.el9.x86_64                           12/20 
  Verifying        : glibc-headers-2.34-40.el9.x86_64                     13/20 
  Verifying        : gcc-plugin-annobin-11.3.1-2.1.el9.x86_64             14/20 
  Verifying        : glibc-devel-2.34-40.el9.x86_64                       15/20 
  Verifying        : kernel-headers-5.14.0-162.6.1.el9_1.x86_64           16/20 
  Verifying        : cpp-11.3.1-2.1.el9.x86_64                            17/20 
  Verifying        : gcc-11.3.1-2.1.el9.x86_64                            18/20 
  Verifying        : llvm-libs-14.0.6-1.el9.x86_64                        19/20 
  Verifying        : zlib-devel-1.2.11-34.el9.x86_64                      20/20 
Installed products updated.

Installed:
  annobin-10.73-3.el9.x86_64                                                    
  cpp-11.3.1-2.1.el9.x86_64                                                     
  gcc-11.3.1-2.1.el9.x86_64                                                     
  gcc-plugin-annobin-11.3.1-2.1.el9.x86_64                                      
  glibc-devel-2.34-40.el9.x86_64                                                
  glibc-headers-2.34-40.el9.x86_64                                              
  htslib-1.15.1-1.el9.x86_64                                                    
  htslib-devel-1.15.1-1.el9.x86_64                                              
  htslib-tools-1.15.1-1.el9.x86_64                                              
  kernel-headers-5.14.0-162.6.1.el9_1.x86_64                                    
  libedit-3.1-37.20210216cvs.el9.x86_64                                         
  libmpc-1.2.1-4.el9.x86_64                                                     
  libxcrypt-devel-4.4.18-3.el9.x86_64                                           
  llvm-libs-14.0.6-1.el9.x86_64                                                 
  make-1:4.3-7.el9.x86_64                                                       
  ncurses-c++-libs-6.2-8.20210508.el9.x86_64                                    
  ncurses-devel-6.2-8.20210508.el9.x86_64                                       
  perl-FindBin-1.51-479.el9.noarch                                              
  perl-lib-0.65-479.el9.x86_64                                                  
  zlib-devel-1.2.11-34.el9.x86_64                                               

Complete!
Finish: build setup for samtools-1.15.1-3.el9.src.rpm
Start: rpmbuild samtools-1.15.1-3.el9.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1651708800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jrX60v
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1
+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/samtools-1.15.1.tar.bz2
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.15.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.8t80WE
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2023-01-21 04:15:36.970729169 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 "' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pUim7f
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64
++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64
+ cd samtools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/man/man1
+ rm -f /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/varfilter.py
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/zoom2sam.pl
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.15.1-3.el9 --unique-debug-suffix -1.15.1-3.el9.x86_64 --unique-debug-src-base samtools-1.15.1-3.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-long
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/ace2sam
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/ace2sam
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-long
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-short
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/maq2sam-short
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5fa
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5fa
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5sum-lite
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/samtools
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/md5sum-lite
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/samtools
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/wgsim
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/bin/wgsim
original debug info size: 2112kB, size after compression: 1904kB
/usr/lib/rpm/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
2442 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Tm3XLS
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ ldd samtools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fb1b3ac3000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
bgzip -c -b 65272 -s 5 /tmp/i_YfWqB3im/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/i_YfWqB3im/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/i_YfWqB3im/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/i_YfWqB3im/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/i_YfWqB3im/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/i_YfWqB3im/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/i_YfWqB3im/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/i_YfWqB3im/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/i_YfWqB3im/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/i_YfWqB3im/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/i_YfWqB3im/auto_indexed.csi && cat /tmp/i_YfWqB3im/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/i_YfWqB3im/auto_indexed.crai && cat /tmp/i_YfWqB3im/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/i_YfWqB3im/auto_indexed.csi && cat /tmp/i_YfWqB3im/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/i_YfWqB3im/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/i_YfWqB3im/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/i_YfWqB3im/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/i_YfWqB3im/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/i_YfWqB3im/auto_indexed.csi && cat /tmp/i_YfWqB3im/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/i_YfWqB3im/auto_indexed.crai && cat /tmp/i_YfWqB3im/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/i_YfWqB3im/auto_indexed.csi && cat /tmp/i_YfWqB3im/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/i_YfWqB3im/mpileup.bam.list -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/i_YfWqB3im/mpileup.cram.list -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/i_YfWqB3im/mpileup.bam.urllist -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/i_YfWqB3im/mpileup.cram.urllist -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:1050-1060 /tmp/i_YfWqB3im/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/i_YfWqB3im/mpileup.ref.fa.gz -r17:1050-1060 /tmp/i_YfWqB3im/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/i_YfWqB3im/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/i_YfWqB3im/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/i_YfWqB3im/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/i_YfWqB3im/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/i_YfWqB3im/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/i_YfWqB3im/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/i_YfWqB3im/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/i_YfWqB3im/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/i_YfWqB3im/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/i_YfWqB3im/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/i_YfWqB3im/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/i_YfWqB3im/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/i_YfWqB3im/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/i_YfWqB3im/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/i_YfWqB3im/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/i_YfWqB3im/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/i_YfWqB3im/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/i_YfWqB3im/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/i_YfWqB3im/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/i_YfWqB3im/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/i_YfWqB3im/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/i_YfWqB3im/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test115.sam -h -d TGCA /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test117.sam -h -d TGCA /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test119.sam -h -d TGCA /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/i_YfWqB3im/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test121.sam -h -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/i_YfWqB3im/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/i_YfWqB3im/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test123.sam -h -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/i_YfWqB3im/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/i_YfWqB3im/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test125.sam -h -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/i_YfWqB3im/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/i_YfWqB3im/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/i_YfWqB3im/view.001.fobc /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/i_YfWqB3im/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/i_YfWqB3im/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	402: Make BAM with no M5/UR tags                            .. ok

	403: Add @SQ with -t (SAM -> SAM)                           .. ok

	404: Add @SQ with -T (SAM -> SAM)                           .. ok

	405: Add @SQ with -t (BAM -> SAM)                           .. ok

	406: Add @SQ with -T (BAM -> SAM)                           .. ok

	407: Add @SQ with -t (SAM -> BAM)                           .. ok

	408: Add @SQ with -T (SAM -> BAM)                           .. ok

	409: Add @SQ with -t (BAM -> BAM)                           .. ok

	410: Add @SQ with -T (BAM -> BAM)                           .. ok

	411: Add @SQ with -t (SAM -> CRAM)                          .. ok

	412: Add @SQ with -T (SAM -> CRAM)                          .. ok

	413: Add @SQ with -t (BAM -> CRAM)                          .. ok

	414: Add @SQ with -T (BAM -> CRAM)                          .. ok

	415: Make CRAM with no UR field                             .. ok

	416: Decoding CRAM with no UR field via -T                  .. ok

	417: CIGAR B-operator removal                               .. ok

	418: Big SAM -> BAM                                         .. ok

	419: Big SAM -> BAM (2 threads)                             .. ok

	420: Big SAM -> BAM (4 threads)                             .. ok

	421: Big SAM -> CRAM                                        .. ok

	422: Big SAM -> CRAM (2 threads)                            .. ok

	423: Big SAM -> CRAM (4 threads)                            .. ok

	424: Subsample 0.2 (SAM input) ............ ok

	425: Subsample 0.5 (SAM input) ............ ok

	426: Subsample 0.8 (SAM input) ............ ok

	427: Subsample 0.2 (BAM input) ............ ok

	428: Subsample 0.5 (BAM input) ............ ok

	429: Subsample 0.8 (BAM input) ............ ok

	430: Subsample 0.2 (CRAM input) ............ ok

	431: Subsample 0.5 (CRAM input) ............ ok

	432: Subsample 0.8 (CRAM input) ............ ok

	433: SAM add PG                                             .. ok

	434: Unset dup flag, remove dt and do tags                  .. ok

	435: Unmap dup flagged reads.                               .. ok

	436: Unmap dup flagged reads.                               .. ok

	437: fetch pairs                                            .. ok

	438: fetch pairs                                            .. ok

	439: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat BAM files to stdout                                  .. ok

	5: cat recompressed BAM files to stdout                     .. ok

	6: cat CRAM files to stdout                                 .. ok

	7: cat BAM files with new header                            .. ok

	8: cat recompressed BAM files with new header               .. ok

	9: cat CRAM files with new header                           .. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -s /tmp/i_YfWqB3im/bam2fq.discard.s.fq -0 /tmp/i_YfWqB3im/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/i_YfWqB3im/bam2fq.discard.s.fq -0 /tmp/i_YfWqB3im/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/3h6NrTPwMQ - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/i_YfWqB3im/merge.tag.1.bam /tmp/i_YfWqB3im/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/i_YfWqB3im/merge.tag.3.bam /tmp/i_YfWqB3im/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/i_YfWqB3im/merge.bed.1.bam /tmp/i_YfWqB3im/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/oukINPnzwY - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/i_YfWqB3im/merge.tag.1.bam /tmp/i_YfWqB3im/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/i_YfWqB3im/merge.tag.3.bam /tmp/i_YfWqB3im/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/i_YfWqB3im/merge.bed.1.bam /tmp/i_YfWqB3im/merge.bed.2.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/i_YfWqB3im/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/i_YfWqB3im/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/i_YfWqB3im/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/i_YfWqB3im/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/i_YfWqB3im/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line'
.. ok


Number of tests:
    total            .. 807
    passed           .. 776
    failed           .. 0
    expected failure .. 31
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   118
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   47
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   62
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.15.1-3.el9.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BTGL7K
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ cp -pr NEWS /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ cp -pr examples/ /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/doc/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Y2LYrz
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/licenses/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/licenses/samtools
+ cp -pr LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.15.1-3.el9 samtools(x86-64) = 1.15.1-3.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.15.1-3.el9.x86_64
Provides: samtools-debugsource = 1.15.1-3.el9 samtools-debugsource(x86-64) = 1.15.1-3.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.15.1-3.el9.x86_64
Provides: debuginfo(build-id) = 137e8a6a0b00fcef8edf370a69fd5f68d0253dd6 debuginfo(build-id) = 1ac24f7aaad0e3e8f3cec128e1c3f9d8d435b072 debuginfo(build-id) = 21d7f6b235193192b43bd38ce4bca4b1b4fb53b0 debuginfo(build-id) = 5948d6a56a0df8f983812e60956ae418e55e86a4 debuginfo(build-id) = 6bebb63d6853f1d95c3bdec4d70dbdc71a0d697d debuginfo(build-id) = 8324198e88baf2359d0ec8fd7580d891ba4f5806 debuginfo(build-id) = 8eaee96aa04753af5ddaf289a24e312a148f365e samtools-debuginfo = 1.15.1-3.el9 samtools-debuginfo(x86-64) = 1.15.1-3.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(x86-64) = 1.15.1-3.el9
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64
Wrote: /builddir/build/RPMS/samtools-1.15.1-3.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-3.el9.x86_64.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-3.el9.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.S1zc7j
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.el9.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.15.1-3.el9.src.rpm
Finish: build phase for samtools-1.15.1-3.el9.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-x86_64-1674274465.014553/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.el9.src.rpm) Config(child) 1 minutes 12 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool