Mock Version: 1.4.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-pbdZMQ.spec'], chrootPath='/var/lib/mock/975439-epel-7-x86_64-1563552522.622185/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '48074d3047844277b225e84184c03586', '-D', '/var/lib/mock/975439-epel-7-x86_64-1563552522.622185/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-pbdZMQ.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-pbdZMQ-0.3.3-5.el7.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-pbdZMQ.spec'], chrootPath='/var/lib/mock/975439-epel-7-x86_64-1563552522.622185/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd520ce6851464f2ebf8fbeadd59e8069', '-D', '/var/lib/mock/975439-epel-7-x86_64-1563552522.622185/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.0jw7a3h_:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-pbdZMQ.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.bClmkB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pbdZMQ + /usr/bin/mkdir -p pbdZMQ + cd pbdZMQ + /usr/bin/gzip -dc /builddir/build/SOURCES/pbdZMQ_0.3-3.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd pbdZMQ ~/build/BUILD/pbdZMQ/pbdZMQ ~/build/BUILD/pbdZMQ Patch #1 (fix-configure.patch): + echo 'Patch #1 (fix-configure.patch):' + /usr/bin/cat /builddir/build/SOURCES/fix-configure.patch + /usr/bin/patch -p1 --fuzz=0 patching file configure patching file configure.ac + popd ~/build/BUILD/pbdZMQ + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DNbnMw + umask 022 + cd /builddir/build/BUILD + cd pbdZMQ + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vixVes + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 + cd pbdZMQ + mkdir -p /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library pbdZMQ --configure-args=--disable-internal-zmq BUILDSTDERR: * installing *source* package 'pbdZMQ' ... files 'configure', 'configure.ac' have the wrong MD5 checksums BUILDSTDERR: ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.25... yes checking for zmq... yes ****************** Results of pbdZMQ package configure ***************** >> GET_PKG_CONFIG = yes >> GET_SYSTEM_ZMQ = yes >> PKG_CONFIG = /usr/bin/pkg-config >> SYSTEM_ZMQ_INCLUDEDIR = /usr/include >> SYSTEM_ZMQ_LIBDIR = /usr/lib64 >> ENABLE_INTERNAL_ZMQ = no >> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include >> INTERNAL_ZMQ_LIBDIR = ./ >> EXTERNAL_ZMQ_INCLUDE = >> EXTERNAL_ZMQ_LDFLAGS = >> ZMQ_INCLUDE = -I/usr/include >> ZMQ_LDFLAGS = -L/usr/lib64 -lzmq >> EXT_LIBS = >> ZMQ_POLLER = select ************************************************************************ configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq config.status: creating R/zzz.r BUILDSTDERR: ** libs gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_context.c -o R_zmq_context.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_socket.c -o R_zmq_socket.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_sendrecv.c -o R_zmq_sendrecv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_utility.c -o R_zmq_utility.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_message.c -o R_zmq_message.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_transfer.c -o R_zmq_transfer.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c shellexec_wcc.c -o shellexec_wcc.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c R_zmq_poll.c -o R_zmq_poll.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -I/usr/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c zzz.c -o zzz.o gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o pbdZMQ.so R_zmq_context.o R_zmq_socket.o R_zmq_sendrecv.o R_zmq_utility.o R_zmq_message.o R_zmq_transfer.o shellexec_wcc.o R_zmq_poll.o zzz.o -L/usr/lib64 -lzmq -L/usr/lib64/R/lib -lR BUILDSTDERR: installing via 'install.libs.R' to /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library/00LOCK-pbdZMQ/00new/pbdZMQ BUILDSTDERR: ** R BUILDSTDERR: ** demo BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'pbdZMQ' BUILDSTDERR: finding HTML links ... done a0_a_pbdZMQ-package html a0_b_control html a0_b_pbd_opt html a0_c_options html a0_d_context html a1_socket html a2_message html address html b0_sendrecv html b1_sendrecvfile html b2_sendrecv_multipart html b3_poll html random_port html u0_shellexec.wcc html xx_czmq_wrapper html xx_ls_wrapper html xx_rzmq_wrapper html xx_utility html zz_overwrite_shpkg html zz_zmq_control html zz_zmq_flags html BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes 'pbdZMQ-guide.Rnw' BUILDSTDERR: ** testing if installed package can be loaded from temporary location BUILDSTDERR: ** checking absolute paths in shared objects and dynamic libraries BUILDSTDERR: ** testing if installed package can be loaded from final location BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path BUILDSTDERR: * DONE (pbdZMQ) + test -d pbdZMQ/src + cd pbdZMQ/src + rm -f R_zmq_context.o R_zmq_message.o R_zmq_poll.o R_zmq_sendrecv.o R_zmq_socket.o R_zmq_transfer.o R_zmq_utility.o shellexec_wcc.o zzz.o pbdZMQ.so + rm -f /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library/R.css + rm -r /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library/pbdZMQ/zmq_copyright + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/pbdZMQ extracting debug info from /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/lib64/R/library/pbdZMQ/libs/pbdZMQ.so BUILDSTDERR: dwz: Too few files for multifile optimization /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 51 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.zCWRyE + umask 022 + cd /builddir/build/BUILD + cd pbdZMQ + /usr/bin/R CMD check pbdZMQ * using log directory '/builddir/build/BUILD/pbdZMQ/pbdZMQ.Rcheck' * using R version 3.6.0 (2019-04-26) * using platform: x86_64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'pbdZMQ/DESCRIPTION' ... OK * this is package 'pbdZMQ' version '0.3-3' * checking package namespace information ... OK BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'pbdZMQ' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... NOTE Found the following sources/headers with CR or CRLF line endings: src/zmqsrc/src/condition_variable.hpp Some Unix compilers require LF line endings. * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both 'src/Makevars.in' and 'src/Makevars'. Installation with --no-configure' is unlikely to work. If you intended 'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' otherwise remove it. If 'configure' created 'src/Makevars', you need a 'cleanup' script. * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking include directives in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... BUILDSTDERR: Running 'address.R' BUILDSTDERR: Running 'ports.R' BUILDSTDERR: Running 'send_recv.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'pbdZMQ-guide.Rnw' ... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/pbdZMQ/pbdZMQ.Rcheck/00check.log' BUILDSTDERR: for details. + exit 0 Processing files: R-pbdZMQ-0.3.3-5.el7.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.x4ZYQc + umask 022 + cd /builddir/build/BUILD + cd pbdZMQ + LICENSEDIR=/builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/share/licenses/R-pbdZMQ-0.3.3 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/share/licenses/R-pbdZMQ-0.3.3 + cp -pr pbdZMQ/COPYING /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64/usr/share/licenses/R-pbdZMQ-0.3.3 + exit 0 Provides: R-pbdZMQ = 0.3.3-5.el7 R-pbdZMQ(x86-64) = 0.3.3-5.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libzmq.so.5()(64bit) rtld(GNU_HASH) Processing files: R-pbdZMQ-debuginfo-0.3.3-5.el7.x86_64 Provides: R-pbdZMQ-debuginfo = 0.3.3-5.el7 R-pbdZMQ-debuginfo(x86-64) = 0.3.3-5.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 Wrote: /builddir/build/RPMS/R-pbdZMQ-0.3.3-5.el7.x86_64.rpm Wrote: /builddir/build/RPMS/R-pbdZMQ-debuginfo-0.3.3-5.el7.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.32rfrW + umask 022 + cd /builddir/build/BUILD + cd pbdZMQ + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-pbdZMQ-0.3.3-5.el7.x86_64 + exit 0 Child return code was: 0