Mock Version: 2.3 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/mcsim.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-1591545055.652280/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3f8f4089dfe34205b1fd2b8a3315c1f0', '-D', '/var/lib/mock/epel-7-x86_64-1591545055.652280/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/mcsim.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/mcsim-6.2.0-1.el7.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/mcsim.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-1591545055.652280/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd54069fcdd7e4e5aa4bb24ad9503c4b8', '-D', '/var/lib/mock/epel-7-x86_64-1591545055.652280/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.muc77h1b:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/mcsim.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.FOT7Im + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf mcsim-6.2.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/mcsim-6.2.0.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd mcsim-6.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + chmod -x examples/SBML/C_periph.xml examples/SBML/C_central.xml + dos2unix examples/SBML/C_periph.xml examples/SBML/C_central.xml dos2unix: converting file examples/SBML/C_periph.xml to Unix format ... dos2unix: converting file examples/SBML/C_central.xml to Unix format ... + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.O7tvuB + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro ' + export LDFLAGS + '[' 1 == 1 ']' + '[' x86_64 == ppc64le ']' ++ find . -name config.guess -o -name config.sub + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for x86_64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for x86_64-redhat-linux-gnu-ar... no checking for x86_64-redhat-linux-gnu-lib... no checking for x86_64-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking whether to compile using MPI... yes checking for x86_64-redhat-linux-gnu-mpicc... (cached) gcc checking for x86_64-redhat-linux-gnu-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for function MPI_Init... no checking for function MPI_Init in -lmpi... no checking for function MPI_Init in -lmpich... no configure: No-MPI requested, won't use MPI. checking for wish... no checking for gnuplot... no checking for main in -llapack... no checking for main in -lsundials_nvecserial... no checking for main in -lsundials_cvodes... no checking for main in -lgslcblas... yes checking for gsl_cdf_gamma_P in -lgsl... yes checking for main in -lm... yes checking for main in -lsbml... no checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... yes checking for modf... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking for erfc... yes checking for nextafter... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating mod/Makefile config.status: creating sim/Makefile config.status: creating doc/Makefile config.status: creating sim/makemcsim config.status: creating sim/makemcsimp config.status: creating sim/makemcsimd config.status: creating sim/makemcsims config.status: creating examples/perc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands + chmod +x examples/perc/Makefile + /usr/bin/make -j2 /usr/bin/make all-recursive make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' Making all in mod make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/mod' gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o getopt.o getopt.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o lex.o lex.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o lexerr.o lexerr.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o lexfn.o lexfn.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o mod.o mod.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o modd.o modd.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o modi.o modi.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o modiSBML.o modiSBML.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o modiSBML2.o modiSBML2.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o modo.o modo.c gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o strutil.o strutil.c /bin/sh ../libtool --tag=CC --mode=link gcc -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -Wl,-z,relro -o mod getopt.o lex.o lexerr.o lexfn.o mod.o modd.o modi.o modiSBML.o modiSBML2.o modo.o strutil.o -lm -lgsl -lgslcblas libtool: link: gcc -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -Wl,-z -Wl,relro -o mod getopt.o lex.o lexerr.o lexfn.o mod.o modd.o modi.o modiSBML.o modiSBML2.o modo.o strutil.o -lm -lgsl -lgslcblas make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/mod' Making all in sim make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/sim' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o delays.lo delays.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o getopt.lo getopt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c delays.c -fPIC -DPIC -o .libs/delays.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c getopt.c -fPIC -DPIC -o .libs/getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c delays.c -o delays.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c getopt.c -o getopt.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o lex.lo lex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c lex.c -fPIC -DPIC -o .libs/lex.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c -o lexerr.lo lexerr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c lexerr.c -fPIC -DPIC -o .libs/lexerr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c lex.c -o lex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O3 -w -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -Wl,-z,relro -o libmcsim.la -rpath /usr/lib64 delays.lo getopt.lo lex.lo lexerr.lo lexfn.lo list.lo lsodes1.lo lsodes2.lo matutil.lo matutilo.lo mh.lo modelu.lo optdsign.lo random.lo sim.lo simi.lo siminit.lo simmonte.lo simo.lo strutil.lo yourcode.lo -lm -lgsl -lgslcblas libtool: link: gcc -shared -fPIC -DPIC .libs/delays.o .libs/getopt.o .libs/lex.o .libs/lexerr.o .libs/lexfn.o .libs/list.o .libs/lsodes1.o .libs/lsodes2.o .libs/matutil.o .libs/matutilo.o .libs/mh.o .libs/modelu.o .libs/optdsign.o .libs/random.o .libs/sim.o .libs/simi.o .libs/siminit.o .libs/simmonte.o .libs/simo.o .libs/strutil.o .libs/yourcode.o -lm -lgsl -lgslcblas -O3 -O2 -g -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -Wl,-z -Wl,relro -Wl,-soname -Wl,libmcsim.so.0 -o .libs/libmcsim.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libmcsim.so.0" && ln -s "libmcsim.so.0.0.0" "libmcsim.so.0") libtool: link: (cd ".libs" && rm -f "libmcsim.so" && ln -s "libmcsim.so.0.0.0" "libmcsim.so") libtool: link: ar cru .libs/libmcsim.a delays.o getopt.o lex.o lexerr.o lexfn.o list.o lsodes1.o lsodes2.o matutil.o matutilo.o mh.o modelu.o optdsign.o random.o sim.o simi.o siminit.o simmonte.o simo.o strutil.o yourcode.o libtool: link: ranlib .libs/libmcsim.a libtool: link: ( cd ".libs" && rm -f "libmcsim.la" && ln -s "../libmcsim.la" "libmcsim.la" ) make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/sim' Making all in doc make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8pwjxn + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 ++ dirname /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 + cd mcsim-6.2.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 Making install in mod make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/mod' make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/mod' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c mod '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin' libtool: install: /usr/bin/install -c mod /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin/mod /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/mcsim/mod' /usr/bin/install -c -m 644 getopt.c getopt.h hungtype.h lex.c lex.h lexerr.c lexerr.h lexfn.c lexfn.h mod.c mod.h modd.c modd.h modi.c modi.h modiSBML.c modiSBML2.c modiSBML.h modo.c modo.h strutil.c strutil.h '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/mcsim/mod' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/mod' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/mod' Making install in sim make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/sim' make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/sim' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin' /usr/bin/install -c makemcsim makemcsims makemcsimd makemcsimp '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64' /bin/sh ../libtool --mode=install /usr/bin/install -c libmcsim.la '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64' libtool: install: /usr/bin/install -c .libs/libmcsim.so.0.0.0 /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.so.0.0.0 libtool: install: (cd /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64 && { ln -s -f libmcsim.so.0.0.0 libmcsim.so.0 || { rm -f libmcsim.so.0 && ln -s libmcsim.so.0.0.0 libmcsim.so.0; }; }) libtool: install: (cd /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64 && { ln -s -f libmcsim.so.0.0.0 libmcsim.so || { rm -f libmcsim.so && ln -s libmcsim.so.0.0.0 libmcsim.so; }; }) libtool: install: /usr/bin/install -c .libs/libmcsim.lai /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.la libtool: install: /usr/bin/install -c .libs/libmcsim.a /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.a libtool: install: chmod 644 /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.a libtool: install: ranlib /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.a libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include' /usr/bin/install -c -m 644 delays.h matutil.h list.h lex.h sim.h lexfn.h hungtype.h modiface.h modelu.h random.h yourcode.h '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/mcsim/sim' /usr/bin/install -c -m 644 delays.c delays.h getopt.c getopt.h hungtype.h lex.c lex.h lexerr.c lexerr.h lexfn.c lexfn.h list.c list.h lsodes.h lsodes1.c lsodes2.c matutil.c matutil.h matutilo.c matutilo.h mh.c mh.h modelu.c modelu.h modiface.h optdsign.c optdsign.h random.c random.h sim.c sim.h simi.c simi.h siminit.c siminit.h simmonte.c simmonte.h simo.c simo.h strutil.c '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/mcsim/sim' /usr/bin/install -c -m 644 strutil.h yourcode.c yourcode.h '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/mcsim/sim' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/sim' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/sim' Making install in doc make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[2]: Nothing to be done for `install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/info' /usr/bin/install -c -m 644 ./mcsim.info '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/info' '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/info/mcsim.info' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' make[2]: Nothing to be done for `install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include' /usr/bin/install -c -m 644 config.h '/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' + mkdir /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/mcsim + mv /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/config.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/delays.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/hungtype.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/lex.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/lexfn.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/list.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/matutil.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/modelu.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/modiface.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/random.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/sim.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/yourcode.h /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/include/mcsim + rm /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/info/dir + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/mcsim-6.2.0 extracting debug info from /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/lib64/libmcsim.so.0.0.0 extracting debug info from /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/bin/mod /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/lib64/libmcsim.so.0.0.0.debug to /usr/lib/debug/usr/lib64/libmcsim.so.debug symlinked /usr/lib/debug/usr/lib64/libmcsim.so.0.0.0.debug to /usr/lib/debug/usr/lib64/libmcsim.so.0.debug 1963 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.AXuuWa + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + make check Making check in mod make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/mod' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/mod' Making check in sim make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/sim' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/sim' Making check in doc make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0/doc' make[1]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' make check-TESTS make[2]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' make[3]: Entering directory `/builddir/build/BUILD/mcsim-6.2.0' PASS: examples/perc/Makefile ============================================================================ Testsuite summary for mcsim 6.2.0 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' make[2]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' make[1]: Leaving directory `/builddir/build/BUILD/mcsim-6.2.0' + rm -f examples/perc/mcsim.perc examples/perc/model.c examples/perc/Makefile examples/perc/Makefile.log examples/perc/Makefile.trs + exit 0 Processing files: mcsim-6.2.0-1.el7.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.7edmd2 + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + LICENSEDIR=/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-6.2.0 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-6.2.0 + cp -pr COPYING /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-6.2.0 + exit 0 Provides: libmcsim.so.0()(64bit) mcsim = 6.2.0-1.el7 mcsim(x86-64) = 6.2.0-1.el7 Requires(interp): /bin/sh /bin/sh /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh info Requires(preun): /bin/sh info Requires(postun): /sbin/ldconfig Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgsl.so.0()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) rtld(GNU_HASH) Processing files: mcsim-devel-6.2.0-1.el7.x86_64 Provides: mcsim-devel = 6.2.0-1.el7 mcsim-devel(x86-64) = 6.2.0-1.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgsl.so.0()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libmcsim.so.0()(64bit) rtld(GNU_HASH) Processing files: mcsim-doc-6.2.0-1.el7.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.w885eU + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + DOCDIR=/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + cp -pr AUTHORS /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + cp -pr doc/mcsim.html /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + cp -pr doc/mcsim.pdf /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + cp -pr examples /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/doc/mcsim-doc-6.2.0 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Nfh3jM + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + LICENSEDIR=/builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-doc-6.2.0 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-doc-6.2.0 + cp -pr COPYING /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64/usr/share/licenses/mcsim-doc-6.2.0 + exit 0 Provides: mcsim-doc = 6.2.0-1.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash Processing files: mcsim-debuginfo-6.2.0-1.el7.x86_64 Provides: mcsim-debuginfo = 6.2.0-1.el7 mcsim-debuginfo(x86-64) = 6.2.0-1.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 Wrote: /builddir/build/RPMS/mcsim-6.2.0-1.el7.x86_64.rpm Wrote: /builddir/build/RPMS/mcsim-devel-6.2.0-1.el7.x86_64.rpm Wrote: /builddir/build/RPMS/mcsim-doc-6.2.0-1.el7.noarch.rpm Wrote: /builddir/build/RPMS/mcsim-debuginfo-6.2.0-1.el7.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.fiK77i + umask 022 + cd /builddir/build/BUILD + cd mcsim-6.2.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/mcsim-6.2.0-1.el7.x86_64 + exit 0 Child return code was: 0