Warning: Permanently added '172.25.83.188' (ECDSA) to the list of known hosts. Cloning into 'hisat2'... Note: checking out 'a21b323902925e2cbcb8d01c01c4aa5706b40791'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at a21b323... automatic import of hisat2 2.1.0-1 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3860k 100 3860k 0 0 31.5M 0 --:--:-- --:--:-- --:--:-- 31.4M hisat2-2.1.0-source.zip: OK % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3801k 100 3801k 0 0 34.7M 0 --:--:-- --:--:-- --:--:-- 35.0M hisat2-2.1.0-1.el7.centos.src.rpm: OK WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(hisat2.spec) Config(583334-epel-7-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/583334-epel-7-x86_64-bootstrap/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Start(bootstrap): yum install Yum command has been deprecated, use dnf instead. See 'man dnf' and 'man yum2dnf' for more information. copr_base | 3.9 kB 00:00 copr_denisarnaud_boost157 | 3.0 kB 00:00 copr_loveshack_dts6 | 3.0 kB 00:00 https://copr-be.cloud.fedoraproject.org/results/mlampe/devtoolset-4.1/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. copr_praiskup_autotools | 3.0 kB 00:00 base | 3.6 kB 00:00 epel | 4.3 kB 00:00 extras | 3.4 kB 00:00 updates | 3.4 kB 00:00 (2/8): copr_denisarnaud_boo 0% [ ] 0.0 B/s | 0 B --:-- ETA (1/8): copr_denisarnaud_boost157/primary_db | 23 kB 00:00 (2/8): copr_praiskup_autotools/primary_db | 17 kB 00:00 (3/8): copr_loveshack_dts6/primary_db | 23 kB 00:00 (4/8): copr_base/primary_db | 215 kB 00:00 (5/8): base/primary_db | 5.6 MB 00:00 (6/8): epel/primary_db | 4.8 MB 00:00 (8/8): updates/primary_db 57% [=========- ] 0.0 B/s | 11 MB --:-- ETA (7/8): extras/primary_db | 191 kB 00:00 (8/8): updates/primary_db 62% [==========- ] 940 kB/s | 12 MB 00:07 ETA (8/8): updates/primary_db 66% [=========== ] 1.0 MB/s | 12 MB 00:06 ETA (8/8): updates/primary_db 71% [============ ] 1.1 MB/s | 13 MB 00:04 ETA (8/8): updates/primary_db 77% [============= ] 1.2 MB/s | 14 MB 00:03 ETA (8/8): updates/primary_db 84% [============== ] 1.4 MB/s | 16 MB 00:02 ETA (8/8): updates/primary_db 92% [===============- ] 1.7 MB/s | 17 MB 00:00 ETA (8/8): updates/primary_db | 7.8 MB 00:02 Resolving Dependencies --> Running transaction check ---> Package distribution-gpg-keys.noarch 0:1.11-1.el7 will be installed ---> Package shadow-utils.x86_64 2:4.1.5.1-24.el7 will be installed --> Processing Dependency: libselinux >= 1.25.2-1 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: audit-libs >= 1.6.5 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: setup for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: rtld(GNU_HASH) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1(LIBSEMANAGE_1.0)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libcrypt.so.1(GLIBC_2.2.5)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libc.so.6(GLIBC_2.14)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libattr.so.1(ATTR_1.1)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libacl.so.1(ACL_1.1)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: coreutils for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libselinux.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libcrypt.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libaudit.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libattr.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libacl.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 ---> Package yum.noarch 0:3.4.3-150.el7.centos will be installed --> Processing Dependency: python(abi) = 2.7 for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: yum-metadata-parser >= 1.1.0 for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: rpm >= 4.4.2 for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: python-urlgrabber >= 3.10-8 for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: python >= 2.4 for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: yum-plugin-fastestmirror for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: rpm-python for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: pyxattr for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: python-sqlite for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: python-iniparse for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: pyliblzma for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: pygpgme for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: diffutils for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: cpio for package: yum-3.4.3-150.el7.centos.noarch --> Processing Dependency: /usr/bin/python for package: yum-3.4.3-150.el7.centos.noarch ---> Package yum-utils.noarch 0:1.1.31-40.el7 will be installed --> Processing Dependency: python-kitchen for package: yum-utils-1.1.31-40.el7.noarch --> Processing Dependency: libxml2-python for package: yum-utils-1.1.31-40.el7.noarch --> Running transaction check ---> Package audit-libs.x86_64 0:2.6.5-3.el7_3.1 will be installed --> Processing Dependency: libcap-ng.so.0()(64bit) for package: audit-libs-2.6.5-3.el7_3.1.x86_64 ---> Package coreutils.x86_64 0:8.22-18.el7 will be installed --> Processing Dependency: ncurses for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcrypto.so.10(libcrypto.so.10)(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: grep for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: gmp for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: /sbin/install-info for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: /sbin/install-info for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: /bin/sh for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: /bin/sh for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libgmp.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcrypto.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcap.so.2()(64bit) for package: coreutils-8.22-18.el7.x86_64 ---> Package cpio.x86_64 0:2.11-24.el7 will be installed ---> Package diffutils.x86_64 0:3.3-4.el7 will be installed ---> Package glibc.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: glibc-common = 2.17-157.el7_3.5 for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: libgcc for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: libfreebl3.so(NSSRAWHASH_3.12.3)(64bit) for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: basesystem for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: libfreebl3.so()(64bit) for package: glibc-2.17-157.el7_3.5.x86_64 ---> Package libacl.x86_64 0:2.2.51-12.el7 will be installed ---> Package libattr.x86_64 0:2.4.46-12.el7 will be installed ---> Package libselinux.x86_64 0:2.5-6.el7 will be installed --> Processing Dependency: libsepol(x86-64) >= 2.5-6 for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: pcre for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: libsepol.so.1(LIBSEPOL_1.0)(64bit) for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: libsepol.so.1()(64bit) for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: libpcre.so.1()(64bit) for package: libselinux-2.5-6.el7.x86_64 ---> Package libsemanage.x86_64 0:2.5-5.1.el7_3 will be installed --> Processing Dependency: libustr-1.0.so.1(USTR_1.0.1)(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: libustr-1.0.so.1(USTR_1.0)(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: bzip2-libs for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: libustr-1.0.so.1()(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: libbz2.so.1()(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 ---> Package libxml2-python.x86_64 0:2.9.1-6.el7_2.3 will be installed --> Processing Dependency: libxml2 = 2.9.1-6.el7_2.3 for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.9.1)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.9.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.8.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.7.3)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.7.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.8)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.6)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.5)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.3)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.28)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.27)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.25)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.23)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.21)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.20)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.2)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.18)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.17)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.16)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.15)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.14)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.12)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.11)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.10)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.1)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.6.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.9)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.8)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.7)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.6)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.4)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.2)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.5.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2(LIBXML2_2.4.30)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libz.so.1()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libxml2.so.2()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: libpython2.7.so.1.0()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 --> Processing Dependency: liblzma.so.5()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64 ---> Package pygpgme.x86_64 0:0.3-9.el7 will be installed --> Processing Dependency: libgpgme.so.11(GPGME_1.1)(64bit) for package: pygpgme-0.3-9.el7.x86_64 --> Processing Dependency: libgpgme.so.11(GPGME_1.0)(64bit) for package: pygpgme-0.3-9.el7.x86_64 --> Processing Dependency: libgpgme.so.11()(64bit) for package: pygpgme-0.3-9.el7.x86_64 ---> Package pyliblzma.x86_64 0:0.5.3-11.el7 will be installed ---> Package python.x86_64 0:2.7.5-48.el7 will be installed ---> Package python-iniparse.noarch 0:0.4-9.el7 will be installed ---> Package python-kitchen.noarch 0:1.1.1-5.el7 will be installed --> Processing Dependency: python-chardet for package: python-kitchen-1.1.1-5.el7.noarch ---> Package python-urlgrabber.noarch 0:3.10-8.el7 will be installed --> Processing Dependency: python-pycurl for package: python-urlgrabber-3.10-8.el7.noarch ---> Package pyxattr.x86_64 0:0.5.1-5.el7 will be installed ---> Package rpm.x86_64 0:4.11.3-21.el7 will be installed --> Processing Dependency: popt(x86-64) >= 1.10.2.1 for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: libpopt.so.0(LIBPOPT_0)(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: curl for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: /usr/bin/db_stat for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: librpmio.so.3()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: librpm.so.3()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: libpopt.so.0()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: libnss3.so()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: liblua-5.1.so()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: libelf.so.1()(64bit) for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: libdb-5.3.so()(64bit) for package: rpm-4.11.3-21.el7.x86_64 ---> Package rpm-python.x86_64 0:4.11.3-21.el7 will be installed --> Processing Dependency: librpmsign.so.1()(64bit) for package: rpm-python-4.11.3-21.el7.x86_64 --> Processing Dependency: librpmbuild.so.3()(64bit) for package: rpm-python-4.11.3-21.el7.x86_64 --> Processing Dependency: libmagic.so.1()(64bit) for package: rpm-python-4.11.3-21.el7.x86_64 ---> Package setup.noarch 0:2.8.71-7.el7 will be installed --> Processing Dependency: system-release for package: setup-2.8.71-7.el7.noarch ---> Package yum-metadata-parser.x86_64 0:1.1.4-10.el7 will be installed --> Processing Dependency: glib2 >= 2.15 for package: yum-metadata-parser-1.1.4-10.el7.x86_64 --> Processing Dependency: libsqlite3.so.0()(64bit) for package: yum-metadata-parser-1.1.4-10.el7.x86_64 --> Processing Dependency: libglib-2.0.so.0()(64bit) for package: yum-metadata-parser-1.1.4-10.el7.x86_64 ---> Package yum-plugin-fastestmirror.noarch 0:1.1.31-40.el7 will be installed --> Running transaction check ---> Package basesystem.noarch 0:10.0-7.el7.centos will be installed --> Processing Dependency: filesystem for package: basesystem-10.0-7.el7.centos.noarch ---> Package bash.x86_64 0:4.2.46-21.el7_3 will be installed --> Processing Dependency: libtinfo.so.5()(64bit) for package: bash-4.2.46-21.el7_3.x86_64 ---> Package bzip2-libs.x86_64 0:1.0.6-13.el7 will be installed ---> Package centos-release.x86_64 0:7-3.1611.el7.centos will be installed ---> Package curl.x86_64 0:7.29.0-35.el7.centos will be installed --> Processing Dependency: libcurl = 7.29.0-35.el7.centos for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libplds4.so()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libplc4.so()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libnssutil3.so()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libnspr4.so()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libcurl.so.4()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 ---> Package elfutils-libelf.x86_64 0:0.166-2.el7 will be installed ---> Package file-libs.x86_64 0:5.11-33.el7 will be installed ---> Package glib2.x86_64 0:2.46.2-4.el7 will be installed --> Processing Dependency: shared-mime-info for package: glib2-2.46.2-4.el7.x86_64 --> Processing Dependency: libffi.so.6()(64bit) for package: glib2-2.46.2-4.el7.x86_64 ---> Package glibc-common.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: tzdata >= 2003a for package: glibc-common-2.17-157.el7_3.5.x86_64 ---> Package gmp.x86_64 1:6.0.0-12.el7_1 will be installed --> Processing Dependency: libstdc++.so.6(GLIBCXX_3.4.11)(64bit) for package: 1:gmp-6.0.0-12.el7_1.x86_64 --> Processing Dependency: libstdc++.so.6(GLIBCXX_3.4)(64bit) for package: 1:gmp-6.0.0-12.el7_1.x86_64 --> Processing Dependency: libstdc++.so.6(CXXABI_1.3)(64bit) for package: 1:gmp-6.0.0-12.el7_1.x86_64 --> Processing Dependency: libstdc++.so.6()(64bit) for package: 1:gmp-6.0.0-12.el7_1.x86_64 ---> Package gpgme.x86_64 0:1.3.2-5.el7 will be installed --> Processing Dependency: libassuan.so.0(LIBASSUAN_1.0)(64bit) for package: gpgme-1.3.2-5.el7.x86_64 --> Processing Dependency: gnupg2 for package: gpgme-1.3.2-5.el7.x86_64 --> Processing Dependency: libgpg-error.so.0()(64bit) for package: gpgme-1.3.2-5.el7.x86_64 --> Processing Dependency: libassuan.so.0()(64bit) for package: gpgme-1.3.2-5.el7.x86_64 ---> Package grep.x86_64 0:2.20-2.el7 will be installed ---> Package info.x86_64 0:5.1-4.el7 will be installed ---> Package libcap.x86_64 0:2.22-8.el7 will be installed ---> Package libcap-ng.x86_64 0:0.7.5-4.el7 will be installed ---> Package libdb.x86_64 0:5.3.21-19.el7 will be installed ---> Package libdb-utils.x86_64 0:5.3.21-19.el7 will be installed ---> Package libgcc.x86_64 0:4.8.5-11.el7 will be installed ---> Package libsepol.x86_64 0:2.5-6.el7 will be installed ---> Package libxml2.x86_64 0:2.9.1-6.el7_2.3 will be installed ---> Package lua.x86_64 0:5.1.4-15.el7 will be installed --> Processing Dependency: libreadline.so.6()(64bit) for package: lua-5.1.4-15.el7.x86_64 ---> Package ncurses.x86_64 0:5.9-13.20130511.el7 will be installed ---> Package nss.x86_64 0:3.28.4-1.2.el7_3 will be installed --> Processing Dependency: nss-softokn(x86-64) >= 3.16.2.3-14.2 for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: nss-system-init for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: /usr/sbin/update-alternatives for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: /usr/sbin/update-alternatives for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libsoftokn3.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssdbm3.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 ---> Package nss-softokn-freebl.x86_64 0:3.16.2.3-14.4.el7 will be installed ---> Package openssl-libs.x86_64 1:1.0.1e-60.el7_3.1 will be installed --> Processing Dependency: ca-certificates >= 2008-5 for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libkrb5.so.3(krb5_3_MIT)(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libk5crypto.so.3(k5crypto_3_MIT)(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libkrb5.so.3()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libk5crypto.so.3()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libgssapi_krb5.so.2()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libcom_err.so.2()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 ---> Package pcre.x86_64 0:8.32-15.el7_2.1 will be installed ---> Package popt.x86_64 0:1.13-16.el7 will be installed ---> Package python-chardet.noarch 0:2.2.1-1.el7_1 will be installed ---> Package python-libs.x86_64 0:2.7.5-48.el7 will be installed --> Processing Dependency: expat >= 2.1.0 for package: python-libs-2.7.5-48.el7.x86_64 --> Processing Dependency: libgdbm_compat.so.4()(64bit) for package: python-libs-2.7.5-48.el7.x86_64 --> Processing Dependency: libgdbm.so.4()(64bit) for package: python-libs-2.7.5-48.el7.x86_64 --> Processing Dependency: libexpat.so.1()(64bit) for package: python-libs-2.7.5-48.el7.x86_64 ---> Package python-pycurl.x86_64 0:7.19.0-19.el7 will be installed --> Processing Dependency: keyutils-libs for package: python-pycurl-7.19.0-19.el7.x86_64 ---> Package rpm-build-libs.x86_64 0:4.11.3-21.el7 will be installed ---> Package rpm-libs.x86_64 0:4.11.3-21.el7 will be installed ---> Package sqlite.x86_64 0:3.7.17-8.el7 will be installed ---> Package ustr.x86_64 0:1.0.4-16.el7 will be installed ---> Package xz-libs.x86_64 0:5.2.2-1.el7 will be installed ---> Package zlib.x86_64 0:1.2.7-17.el7 will be installed --> Running transaction check ---> Package ca-certificates.noarch 0:2017.2.14-70.1.el7_3 will be installed --> Processing Dependency: p11-kit-trust >= 0.17.3 for package: ca-certificates-2017.2.14-70.1.el7_3.noarch --> Processing Dependency: p11-kit >= 0.17.3 for package: ca-certificates-2017.2.14-70.1.el7_3.noarch ---> Package chkconfig.x86_64 0:1.7.2-1.el7_3.1 will be installed ---> Package expat.x86_64 0:2.1.0-10.el7_3 will be installed ---> Package filesystem.x86_64 0:3.2-21.el7 will be installed ---> Package gdbm.x86_64 0:1.10-8.el7 will be installed ---> Package gnupg2.x86_64 0:2.0.22-4.el7 will be installed --> Processing Dependency: pinentry for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libgcrypt.so.11(GCRYPT_1.2)(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libpth.so.20()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libldap-2.4.so.2()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libgcrypt.so.11()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 ---> Package keyutils-libs.x86_64 0:1.5.8-3.el7 will be installed ---> Package krb5-libs.x86_64 0:1.14.1-27.el7_3 will be installed --> Processing Dependency: sed for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: gawk for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libverto.so.1()(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 ---> Package libassuan.x86_64 0:2.1.0-3.el7 will be installed ---> Package libcom_err.x86_64 0:1.42.9-9.el7 will be installed ---> Package libcurl.x86_64 0:7.29.0-35.el7.centos will be installed --> Processing Dependency: libssh2(x86-64) >= 1.4.3 for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libidn.so.11(LIBIDN_1.0)(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libssh2.so.1()(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libidn.so.11()(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 ---> Package libffi.x86_64 0:3.0.13-18.el7 will be installed ---> Package libgpg-error.x86_64 0:1.12-3.el7 will be installed ---> Package libstdc++.x86_64 0:4.8.5-11.el7 will be installed ---> Package ncurses-libs.x86_64 0:5.9-13.20130511.el7 will be installed --> Processing Dependency: ncurses-base = 5.9-13.20130511.el7 for package: ncurses-libs-5.9-13.20130511.el7.x86_64 ---> Package nspr.x86_64 0:4.13.1-1.0.el7_3 will be installed ---> Package nss-softokn.x86_64 0:3.16.2.3-14.4.el7 will be installed ---> Package nss-sysinit.x86_64 0:3.28.4-1.2.el7_3 will be installed ---> Package nss-util.x86_64 0:3.28.4-1.0.el7_3 will be installed ---> Package readline.x86_64 0:6.2-9.el7 will be installed ---> Package shared-mime-info.x86_64 0:1.1-9.el7 will be installed --> Processing Dependency: /usr/bin/pkg-config for package: shared-mime-info-1.1-9.el7.x86_64 ---> Package tzdata.noarch 0:2017b-1.el7 will be installed --> Running transaction check ---> Package gawk.x86_64 0:4.0.2-4.el7_3.1 will be installed ---> Package libgcrypt.x86_64 0:1.5.3-13.el7_3.1 will be installed ---> Package libidn.x86_64 0:1.28-4.el7 will be installed ---> Package libssh2.x86_64 0:1.4.3-10.el7_2.1 will be installed ---> Package libverto.x86_64 0:0.2.5-4.el7 will be installed ---> Package ncurses-base.noarch 0:5.9-13.20130511.el7 will be installed ---> Package openldap.x86_64 0:2.4.40-13.el7 will be installed --> Processing Dependency: nss-tools for package: openldap-2.4.40-13.el7.x86_64 --> Processing Dependency: findutils for package: openldap-2.4.40-13.el7.x86_64 --> Processing Dependency: libsasl2.so.3()(64bit) for package: openldap-2.4.40-13.el7.x86_64 ---> Package p11-kit.x86_64 0:0.20.7-3.el7 will be installed ---> Package p11-kit-trust.x86_64 0:0.20.7-3.el7 will be installed --> Processing Dependency: libtasn1.so.6(LIBTASN1_0_3)(64bit) for package: p11-kit-trust-0.20.7-3.el7.x86_64 --> Processing Dependency: libtasn1.so.6()(64bit) for package: p11-kit-trust-0.20.7-3.el7.x86_64 ---> Package pinentry.x86_64 0:0.8.1-17.el7 will be installed ---> Package pkgconfig.x86_64 1:0.27.1-4.el7 will be installed ---> Package pth.x86_64 0:2.0.7-23.el7 will be installed ---> Package sed.x86_64 0:4.2.2-5.el7 will be installed --> Running transaction check ---> Package cyrus-sasl-lib.x86_64 0:2.1.26-20.el7_2 will be installed ---> Package findutils.x86_64 1:4.5.11-5.el7 will be installed ---> Package libtasn1.x86_64 0:3.8-3.el7 will be installed ---> Package nss-tools.x86_64 0:3.28.4-1.2.el7_3 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: distribution-gpg-keys noarch 1.11-1.el7 epel 132 k shadow-utils x86_64 2:4.1.5.1-24.el7 base 1.1 M yum noarch 3.4.3-150.el7.centos base 1.2 M yum-utils noarch 1.1.31-40.el7 base 116 k Installing for dependencies: audit-libs x86_64 2.6.5-3.el7_3.1 updates 85 k basesystem noarch 10.0-7.el7.centos base 5.0 k bash x86_64 4.2.46-21.el7_3 updates 1.0 M bzip2-libs x86_64 1.0.6-13.el7 base 40 k ca-certificates noarch 2017.2.14-70.1.el7_3 updates 438 k centos-release x86_64 7-3.1611.el7.centos base 23 k chkconfig x86_64 1.7.2-1.el7_3.1 updates 175 k coreutils x86_64 8.22-18.el7 base 3.3 M cpio x86_64 2.11-24.el7 base 210 k curl x86_64 7.29.0-35.el7.centos base 265 k cyrus-sasl-lib x86_64 2.1.26-20.el7_2 base 155 k diffutils x86_64 3.3-4.el7 base 322 k elfutils-libelf x86_64 0.166-2.el7 base 208 k expat x86_64 2.1.0-10.el7_3 updates 81 k file-libs x86_64 5.11-33.el7 base 340 k filesystem x86_64 3.2-21.el7 base 1.0 M findutils x86_64 1:4.5.11-5.el7 base 559 k gawk x86_64 4.0.2-4.el7_3.1 updates 874 k gdbm x86_64 1.10-8.el7 base 70 k glib2 x86_64 2.46.2-4.el7 base 2.3 M glibc x86_64 2.17-157.el7_3.5 updates 3.6 M glibc-common x86_64 2.17-157.el7_3.5 updates 11 M gmp x86_64 1:6.0.0-12.el7_1 base 280 k gnupg2 x86_64 2.0.22-4.el7 base 1.5 M gpgme x86_64 1.3.2-5.el7 base 146 k grep x86_64 2.20-2.el7 base 344 k info x86_64 5.1-4.el7 base 233 k keyutils-libs x86_64 1.5.8-3.el7 base 25 k krb5-libs x86_64 1.14.1-27.el7_3 updates 740 k libacl x86_64 2.2.51-12.el7 base 27 k libassuan x86_64 2.1.0-3.el7 base 63 k libattr x86_64 2.4.46-12.el7 base 18 k libcap x86_64 2.22-8.el7 base 47 k libcap-ng x86_64 0.7.5-4.el7 base 25 k libcom_err x86_64 1.42.9-9.el7 base 40 k libcurl x86_64 7.29.0-35.el7.centos base 218 k libdb x86_64 5.3.21-19.el7 base 718 k libdb-utils x86_64 5.3.21-19.el7 base 102 k libffi x86_64 3.0.13-18.el7 base 30 k libgcc x86_64 4.8.5-11.el7 base 97 k libgcrypt x86_64 1.5.3-13.el7_3.1 updates 263 k libgpg-error x86_64 1.12-3.el7 base 87 k libidn x86_64 1.28-4.el7 base 209 k libselinux x86_64 2.5-6.el7 base 161 k libsemanage x86_64 2.5-5.1.el7_3 updates 144 k libsepol x86_64 2.5-6.el7 base 288 k libssh2 x86_64 1.4.3-10.el7_2.1 base 134 k libstdc++ x86_64 4.8.5-11.el7 base 300 k libtasn1 x86_64 3.8-3.el7 base 320 k libverto x86_64 0.2.5-4.el7 base 16 k libxml2 x86_64 2.9.1-6.el7_2.3 base 668 k libxml2-python x86_64 2.9.1-6.el7_2.3 base 247 k lua x86_64 5.1.4-15.el7 base 201 k ncurses x86_64 5.9-13.20130511.el7 base 303 k ncurses-base noarch 5.9-13.20130511.el7 base 68 k ncurses-libs x86_64 5.9-13.20130511.el7 base 316 k nspr x86_64 4.13.1-1.0.el7_3 updates 126 k nss x86_64 3.28.4-1.2.el7_3 updates 872 k nss-softokn x86_64 3.16.2.3-14.4.el7 base 306 k nss-softokn-freebl x86_64 3.16.2.3-14.4.el7 base 204 k nss-sysinit x86_64 3.28.4-1.2.el7_3 updates 58 k nss-tools x86_64 3.28.4-1.2.el7_3 updates 496 k nss-util x86_64 3.28.4-1.0.el7_3 updates 73 k openldap x86_64 2.4.40-13.el7 base 350 k openssl-libs x86_64 1:1.0.1e-60.el7_3.1 updates 959 k p11-kit x86_64 0.20.7-3.el7 base 107 k p11-kit-trust x86_64 0.20.7-3.el7 base 126 k pcre x86_64 8.32-15.el7_2.1 base 420 k pinentry x86_64 0.8.1-17.el7 base 73 k pkgconfig x86_64 1:0.27.1-4.el7 base 54 k popt x86_64 1.13-16.el7 base 42 k pth x86_64 2.0.7-23.el7 base 89 k pygpgme x86_64 0.3-9.el7 base 63 k pyliblzma x86_64 0.5.3-11.el7 base 47 k python x86_64 2.7.5-48.el7 base 90 k python-chardet noarch 2.2.1-1.el7_1 base 227 k python-iniparse noarch 0.4-9.el7 base 39 k python-kitchen noarch 1.1.1-5.el7 base 267 k python-libs x86_64 2.7.5-48.el7 base 5.6 M python-pycurl x86_64 7.19.0-19.el7 base 80 k python-urlgrabber noarch 3.10-8.el7 base 108 k pyxattr x86_64 0.5.1-5.el7 base 28 k readline x86_64 6.2-9.el7 base 192 k rpm x86_64 4.11.3-21.el7 base 1.2 M rpm-build-libs x86_64 4.11.3-21.el7 base 104 k rpm-libs x86_64 4.11.3-21.el7 base 274 k rpm-python x86_64 4.11.3-21.el7 base 80 k sed x86_64 4.2.2-5.el7 base 231 k setup noarch 2.8.71-7.el7 base 165 k shared-mime-info x86_64 1.1-9.el7 base 371 k sqlite x86_64 3.7.17-8.el7 base 393 k tzdata noarch 2017b-1.el7 updates 443 k ustr x86_64 1.0.4-16.el7 base 92 k xz-libs x86_64 5.2.2-1.el7 base 103 k yum-metadata-parser x86_64 1.1.4-10.el7 base 28 k yum-plugin-fastestmirror noarch 1.1.31-40.el7 base 32 k zlib x86_64 1.2.7-17.el7 base 90 k Transaction Summary ================================================================================ Install 4 Packages (+97 Dependent packages) Total download size: 52 M Installed size: 255 M Downloading packages: warning: /var/lib/mock/583334-epel-7-x86_64-bootstrap/root/var/cache/yum/base/packages/basesystem-10.0-7.el7.centos.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID f4a80eb5: NOKEY Public key for basesystem-10.0-7.el7.centos.noarch.rpm is not installed (1/101): basesystem-10.0-7.el7.centos.noarch.rpm | 5.0 kB 00:00 (2/101): bzip2-libs-1.0.6-13.el7.x86_64.rpm | 40 kB 00:00 Public key for audit-libs-2.6.5-3.el7_3.1.x86_64.rpm is not installed (3/101): audit-libs-2.6.5-3.el7_3.1.x86_64.rpm | 85 kB 00:00 (4/101): centos-release-7-3.1611.el7.centos.x86_64.rpm | 23 kB 00:00 (5/101): ca-certificates-2017.2.14-70.1.el7_3.noarch.rpm | 438 kB 00:00 (7/101): chkconfig-1.7.2-1. 1% [ ] 0.0 B/s | 975 kB --:-- ETA (6/101): chkconfig-1.7.2-1.el7_3.1.x86_64.rpm | 175 kB 00:00 (7/101): bash-4.2.46-21.el7_3.x86_64.rpm | 1.0 MB 00:00 (8/101): coreutils-8.22-18.el7.x86_64.rpm | 3.3 MB 00:00 (9/101): curl-7.29.0-35.el7.centos.x86_64.rpm | 265 kB 00:00 (10/101): cpio-2.11-24.el7.x86_64.rpm | 210 kB 00:00 (11/101): cyrus-sasl-lib-2.1.26-20.el7_2.x86_64.rpm | 155 kB 00:00 (12/101): elfutils-libelf-0.166-2.el7.x86_64.rpm | 208 kB 00:00 (13/101): diffutils-3.3-4.el7.x86_64.rpm | 322 kB 00:00 (14/101): file-libs-5.11-33.el7.x86_64.rpm | 340 kB 00:00 (15/101): expat-2.1.0-10.el7_3.x86_64.rpm | 81 kB 00:00 (16/101): findutils-4.5.11-5.el7.x86_64.rpm | 559 kB 00:00 (17/101): filesystem-3.2-21.el7.x86_64.rpm | 1.0 MB 00:00 (18/101): gdbm-1.10-8.el7.x86_64.rpm | 70 kB 00:00 (19/101): glib2-2.46.2-4.el7.x86_64.rpm | 2.3 MB 00:00 warning: /var/lib/mock/583334-epel-7-x86_64-bootstrap/root/var/cache/yum/epel/packages/distribution-gpg-keys-1.11-1.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY Public key for distribution-gpg-keys-1.11-1.el7.noarch.rpm is not installed (20/101): distribution-gpg-keys-1.11-1.el7.noarch.rpm | 132 kB 00:00 (22/101): glibc-2.17-157.e 23% [===- ] 8.0 MB/s | 12 MB 00:04 ETA (21/101): gawk-4.0.2-4.el7_3.1.x86_64.rpm | 874 kB 00:00 (22/101): gmp-6.0.0-12.el7_1.x86_64.rpm | 280 kB 00:00 (23/101): gpgme-1.3.2-5.el7.x86_64.rpm | 146 kB 00:00 (24/101): grep-2.20-2.el7.x86_64.rpm | 344 kB 00:00 (27/101): gnupg2-2.0.22-4. 29% [====- ] 8.0 MB/s | 15 MB 00:04 ETA (25/101): info-5.1-4.el7.x86_64.rpm | 233 kB 00:00 (26/101): keyutils-libs-1.5.8-3.el7.x86_64.rpm | 25 kB 00:00 (27/101): glibc-2.17-157.el7_3.5.x86_64.rpm | 3.6 MB 00:00 (28/101): libacl-2.2.51-12.el7.x86_64.rpm | 27 kB 00:00 (29/101): libassuan-2.1.0-3.el7.x86_64.rpm | 63 kB 00:00 (30/101): libattr-2.4.46-12.el7.x86_64.rpm | 18 kB 00:00 (31/101): gnupg2-2.0.22-4.el7.x86_64.rpm | 1.5 MB 00:00 (32/101): libcap-2.22-8.el7.x86_64.rpm | 47 kB 00:00 (33/101): libcap-ng-0.7.5-4.el7.x86_64.rpm | 25 kB 00:00 (34/101): libcom_err-1.42.9-9.el7.x86_64.rpm | 40 kB 00:00 (35/101): libcurl-7.29.0-35.el7.centos.x86_64.rpm | 218 kB 00:00 (36/101): libdb-utils-5.3.21-19.el7.x86_64.rpm | 102 kB 00:00 (37/101): libdb-5.3.21-19.el7.x86_64.rpm | 718 kB 00:00 (38/101): libffi-3.0.13-18.el7.x86_64.rpm | 30 kB 00:00 (39/101): libgcc-4.8.5-11.el7.x86_64.rpm | 97 kB 00:00 (40/101): krb5-libs-1.14.1-27.el7_3.x86_64.rpm | 740 kB 00:00 (41/101): libgpg-error-1.12-3.el7.x86_64.rpm | 87 kB 00:00 (42/101): libselinux-2.5-6.el7.x86_64.rpm | 161 kB 00:00 (45/101): libidn-1.28-4.el 43% [======= ] 8.6 MB/s | 23 MB 00:03 ETA (43/101): libgcrypt-1.5.3-13.el7_3.1.x86_64.rpm | 263 kB 00:00 (44/101): libsepol-2.5-6.el7.x86_64.rpm | 288 kB 00:00 (45/101): libidn-1.28-4.el7.x86_64.rpm | 209 kB 00:00 (46/101): libssh2-1.4.3-10.el7_2.1.x86_64.rpm | 134 kB 00:00 (47/101): libtasn1-3.8-3.el7.x86_64.rpm | 320 kB 00:00 (48/101): libstdc++-4.8.5-11.el7.x86_64.rpm | 300 kB 00:00 (49/101): libverto-0.2.5-4.el7.x86_64.rpm | 16 kB 00:00 (50/101): libsemanage-2.5-5.1.el7_3.x86_64.rpm | 144 kB 00:00 (51/101): libxml2-python-2.9.1-6.el7_2.3.x86_64.rpm | 247 kB 00:00 (52/101): libxml2-2.9.1-6.el7_2.3.x86_64.rpm | 668 kB 00:00 (53/101): lua-5.1.4-15.el7.x86_64.rpm | 201 kB 00:00 (54/101): ncurses-5.9-13.20130511.el7.x86_64.rpm | 303 kB 00:00 (55/101): ncurses-base-5.9-13.20130511.el7.noarch.rpm | 68 kB 00:00 (56/101): ncurses-libs-5.9-13.20130511.el7.x86_64.rpm | 316 kB 00:00 (57/101): nspr-4.13.1-1.0.el7_3.x86_64.rpm | 126 kB 00:00 (60/101): nss-softokn-3.16 54% [========= ] 9.1 MB/s | 28 MB 00:02 ETA (58/101): nss-softokn-3.16.2.3-14.4.el7.x86_64.rpm | 306 kB 00:00 (59/101): nss-softokn-freebl-3.16.2.3-14.4.el7.x86_64.rpm | 204 kB 00:00 (60/101): glibc-common-2.1 59% [========== ] 9.1 MB/s | 31 MB 00:02 ETA (60/101): nss-3.28.4-1.2.el7_3.x86_64.rpm | 872 kB 00:00 (61/101): nss-sysinit-3.28.4-1.2.el7_3.x86_64.rpm | 58 kB 00:00 (62/101): glibc-common-2.1 66% [=========== ] 9.2 MB/s | 34 MB 00:01 ETA (62/101): nss-tools-3.28.4-1.2.el7_3.x86_64.rpm | 496 kB 00:00 (63/101): nss-util-3.28.4-1.0.el7_3.x86_64.rpm | 73 kB 00:00 (64/101): openldap-2.4.40-13.el7.x86_64.rpm | 350 kB 00:00 (65/101): p11-kit-trust-0.20.7-3.el7.x86_64.rpm | 126 kB 00:00 (66/101): pcre-8.32-15.el7_2.1.x86_64.rpm | 420 kB 00:00 (67/101): glibc-common-2.1 71% [============ ] 9.2 MB/s | 37 MB 00:01 ETA (67/101): pinentry-0.8.1-17.el7.x86_64.rpm | 73 kB 00:00 (68/101): pkgconfig-0.27.1-4.el7.x86_64.rpm | 54 kB 00:00 (69/101): popt-1.13-16.el7.x86_64.rpm | 42 kB 00:00 (70/101): pth-2.0.7-23.el7.x86_64.rpm | 89 kB 00:00 (71/101): p11-kit-0.20.7-3.el7.x86_64.rpm | 107 kB 00:00 (72/101): pygpgme-0.3-9.el7.x86_64.rpm | 63 kB 00:00 (73/101): pyliblzma-0.5.3-11.el7.x86_64.rpm | 47 kB 00:00 (74/101): glibc-common-2.17-157.el7_3.5.x86_64.rpm | 11 MB 00:02 (75/101): python-2.7.5-48.el7.x86_64.rpm | 90 kB 00:00 (76/101): python-iniparse-0.4-9.el7.noarch.rpm | 39 kB 00:00 (77/101): python-chardet-2.2.1-1.el7_1.noarch.rpm | 227 kB 00:00 (78/101): python-kitchen-1.1.1-5.el7.noarch.rpm | 267 kB 00:00 (79/101): python-pycurl-7.19.0-19.el7.x86_64.rpm | 80 kB 00:00 (80/101): python-urlgrabber-3.10-8.el7.noarch.rpm | 108 kB 00:00 (81/101): pyxattr-0.5.1-5.el7.x86_64.rpm | 28 kB 00:00 (82/101): readline-6.2-9.el7.x86_64.rpm | 192 kB 00:00 (83/101): rpm-4.11.3-21.el7.x86_64.rpm | 1.2 MB 00:00 (84/101): python-libs-2.7.5-48.el7.x86_64.rpm | 5.6 MB 00:00 (85/101): rpm-build-libs-4.11.3-21.el7.x86_64.rpm | 104 kB 00:00 (86/101): openssl-libs-1.0.1e-60.el7_3.1.x86_64.rpm | 959 kB 00:00 (87/101): rpm-libs-4.11.3-21.el7.x86_64.rpm | 274 kB 00:00 (88/101): rpm-python-4.11.3-21.el7.x86_64.rpm | 80 kB 00:00 (89/101): sed-4.2.2-5.el7.x86_64.rpm | 231 kB 00:00 (90/101): setup-2.8.71-7.el7.noarch.rpm | 165 kB 00:00 (91/101): shared-mime-info-1.1-9.el7.x86_64.rpm | 371 kB 00:00 (92/101): shadow-utils-4.1.5.1-24.el7.x86_64.rpm | 1.1 MB 00:00 (93/101): sqlite-3.7.17-8.el7.x86_64.rpm | 393 kB 00:00 (94/101): ustr-1.0.4-16.el7.x86_64.rpm | 92 kB 00:00 (95/101): xz-libs-5.2.2-1.el7.x86_64.rpm | 103 kB 00:00 (96/101): yum-metadata-parser-1.1.4-10.el7.x86_64.rpm | 28 kB 00:00 (97/101): yum-3.4.3-150.el7.centos.noarch.rpm | 1.2 MB 00:00 (98/101): yum-plugin-fastestmirror-1.1.31-40.el7.noarch.rpm | 32 kB 00:00 (99/101): yum-utils-1.1.31-40.el7.noarch.rpm | 116 kB 00:00 (100/101): zlib-1.2.7-17.el7.x86_64.rpm | 90 kB 00:00 (101/101): tzdata-2017b-1.el7.noarch.rpm | 443 kB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 52 MB 00:04 Retrieving key from file:///usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Importing GPG key 0xF4A80EB5: Userid : "CentOS-7 Key (CentOS 7 Official Signing Key) " Fingerprint: 6341 ab27 53d7 8a78 a7c2 7bb1 24c6 a8a7 f4a8 0eb5 From : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Retrieving key from file:///usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Importing GPG key 0x352C64E5: Userid : "Fedora EPEL (7) " Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5 From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : libgcc-4.8.5-11.el7.x86_64 [ ] 1/101 Installing : libgcc-4.8.5-11.el7.x86_64 [#### ] 1/101 Installing : libgcc-4.8.5-11.el7.x86_64 [######### ] 1/101 Installing : libgcc-4.8.5-11.el7.x86_64 [############# ] 1/101 Installing : libgcc-4.8.5-11.el7.x86_64 [############### ] 1/101 Installing : 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file-libs-5.11-33.el7.x86_64 10/101 Verifying : zlib-1.2.7-17.el7.x86_64 11/101 Verifying : 1:gmp-6.0.0-12.el7_1.x86_64 12/101 Verifying : libcurl-7.29.0-35.el7.centos.x86_64 13/101 Verifying : tzdata-2017b-1.el7.noarch 14/101 Verifying : libtasn1-3.8-3.el7.x86_64 15/101 Verifying : shared-mime-info-1.1-9.el7.x86_64 16/101 Verifying : libacl-2.2.51-12.el7.x86_64 17/101 Verifying : readline-6.2-9.el7.x86_64 18/101 Verifying : libffi-3.0.13-18.el7.x86_64 19/101 Verifying : grep-2.20-2.el7.x86_64 20/101 Verifying : libassuan-2.1.0-3.el7.x86_64 21/101 Verifying : ustr-1.0.4-16.el7.x86_64 22/101 Verifying : lua-5.1.4-15.el7.x86_64 23/101 Verifying : sqlite-3.7.17-8.el7.x86_64 24/101 Verifying : gnupg2-2.0.22-4.el7.x86_64 25/101 Verifying : libidn-1.28-4.el7.x86_64 26/101 Verifying : libdb-5.3.21-19.el7.x86_64 27/101 Verifying : python-iniparse-0.4-9.el7.noarch 28/101 Verifying : 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 29/101 Verifying : rpm-build-libs-4.11.3-21.el7.x86_64 30/101 Verifying : yum-utils-1.1.31-40.el7.noarch 31/101 Verifying : basesystem-10.0-7.el7.centos.noarch 32/101 Verifying : openldap-2.4.40-13.el7.x86_64 33/101 Verifying : libverto-0.2.5-4.el7.x86_64 34/101 Verifying : yum-plugin-fastestmirror-1.1.31-40.el7.noarch 35/101 Verifying : rpm-4.11.3-21.el7.x86_64 36/101 Verifying : glibc-common-2.17-157.el7_3.5.x86_64 37/101 Verifying : bzip2-libs-1.0.6-13.el7.x86_64 38/101 Verifying : python-libs-2.7.5-48.el7.x86_64 39/101 Verifying : 2:shadow-utils-4.1.5.1-24.el7.x86_64 40/101 Verifying : libselinux-2.5-6.el7.x86_64 41/101 Verifying : libcom_err-1.42.9-9.el7.x86_64 42/101 Verifying : glib2-2.46.2-4.el7.x86_64 43/101 Verifying : curl-7.29.0-35.el7.centos.x86_64 44/101 Verifying : centos-release-7-3.1611.el7.centos.x86_64 45/101 Verifying : libgpg-error-1.12-3.el7.x86_64 46/101 Verifying : python-kitchen-1.1.1-5.el7.noarch 47/101 Verifying : filesystem-3.2-21.el7.x86_64 48/101 Verifying : nspr-4.13.1-1.0.el7_3.x86_64 49/101 Verifying : popt-1.13-16.el7.x86_64 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89/101 Verifying : libstdc++-4.8.5-11.el7.x86_64 90/101 Verifying : sed-4.2.2-5.el7.x86_64 91/101 Verifying : 1:findutils-4.5.11-5.el7.x86_64 92/101 Verifying : libcap-2.22-8.el7.x86_64 93/101 Verifying : diffutils-3.3-4.el7.x86_64 94/101 Verifying : ncurses-5.9-13.20130511.el7.x86_64 95/101 Verifying : python-chardet-2.2.1-1.el7_1.noarch 96/101 Verifying : cpio-2.11-24.el7.x86_64 97/101 Verifying : rpm-libs-4.11.3-21.el7.x86_64 98/101 Verifying : ncurses-libs-5.9-13.20130511.el7.x86_64 99/101 Verifying : info-5.1-4.el7.x86_64 100/101 Verifying : elfutils-libelf-0.166-2.el7.x86_64 101/101 Installed: distribution-gpg-keys.noarch 0:1.11-1.el7 shadow-utils.x86_64 2:4.1.5.1-24.el7 yum.noarch 0:3.4.3-150.el7.centos yum-utils.noarch 0:1.1.31-40.el7 Dependency Installed: audit-libs.x86_64 0:2.6.5-3.el7_3.1 basesystem.noarch 0:10.0-7.el7.centos bash.x86_64 0:4.2.46-21.el7_3 bzip2-libs.x86_64 0:1.0.6-13.el7 ca-certificates.noarch 0:2017.2.14-70.1.el7_3 centos-release.x86_64 0:7-3.1611.el7.centos chkconfig.x86_64 0:1.7.2-1.el7_3.1 coreutils.x86_64 0:8.22-18.el7 cpio.x86_64 0:2.11-24.el7 curl.x86_64 0:7.29.0-35.el7.centos cyrus-sasl-lib.x86_64 0:2.1.26-20.el7_2 diffutils.x86_64 0:3.3-4.el7 elfutils-libelf.x86_64 0:0.166-2.el7 expat.x86_64 0:2.1.0-10.el7_3 file-libs.x86_64 0:5.11-33.el7 filesystem.x86_64 0:3.2-21.el7 findutils.x86_64 1:4.5.11-5.el7 gawk.x86_64 0:4.0.2-4.el7_3.1 gdbm.x86_64 0:1.10-8.el7 glib2.x86_64 0:2.46.2-4.el7 glibc.x86_64 0:2.17-157.el7_3.5 glibc-common.x86_64 0:2.17-157.el7_3.5 gmp.x86_64 1:6.0.0-12.el7_1 gnupg2.x86_64 0:2.0.22-4.el7 gpgme.x86_64 0:1.3.2-5.el7 grep.x86_64 0:2.20-2.el7 info.x86_64 0:5.1-4.el7 keyutils-libs.x86_64 0:1.5.8-3.el7 krb5-libs.x86_64 0:1.14.1-27.el7_3 libacl.x86_64 0:2.2.51-12.el7 libassuan.x86_64 0:2.1.0-3.el7 libattr.x86_64 0:2.4.46-12.el7 libcap.x86_64 0:2.22-8.el7 libcap-ng.x86_64 0:0.7.5-4.el7 libcom_err.x86_64 0:1.42.9-9.el7 libcurl.x86_64 0:7.29.0-35.el7.centos libdb.x86_64 0:5.3.21-19.el7 libdb-utils.x86_64 0:5.3.21-19.el7 libffi.x86_64 0:3.0.13-18.el7 libgcc.x86_64 0:4.8.5-11.el7 libgcrypt.x86_64 0:1.5.3-13.el7_3.1 libgpg-error.x86_64 0:1.12-3.el7 libidn.x86_64 0:1.28-4.el7 libselinux.x86_64 0:2.5-6.el7 libsemanage.x86_64 0:2.5-5.1.el7_3 libsepol.x86_64 0:2.5-6.el7 libssh2.x86_64 0:1.4.3-10.el7_2.1 libstdc++.x86_64 0:4.8.5-11.el7 libtasn1.x86_64 0:3.8-3.el7 libverto.x86_64 0:0.2.5-4.el7 libxml2.x86_64 0:2.9.1-6.el7_2.3 libxml2-python.x86_64 0:2.9.1-6.el7_2.3 lua.x86_64 0:5.1.4-15.el7 ncurses.x86_64 0:5.9-13.20130511.el7 ncurses-base.noarch 0:5.9-13.20130511.el7 ncurses-libs.x86_64 0:5.9-13.20130511.el7 nspr.x86_64 0:4.13.1-1.0.el7_3 nss.x86_64 0:3.28.4-1.2.el7_3 nss-softokn.x86_64 0:3.16.2.3-14.4.el7 nss-softokn-freebl.x86_64 0:3.16.2.3-14.4.el7 nss-sysinit.x86_64 0:3.28.4-1.2.el7_3 nss-tools.x86_64 0:3.28.4-1.2.el7_3 nss-util.x86_64 0:3.28.4-1.0.el7_3 openldap.x86_64 0:2.4.40-13.el7 openssl-libs.x86_64 1:1.0.1e-60.el7_3.1 p11-kit.x86_64 0:0.20.7-3.el7 p11-kit-trust.x86_64 0:0.20.7-3.el7 pcre.x86_64 0:8.32-15.el7_2.1 pinentry.x86_64 0:0.8.1-17.el7 pkgconfig.x86_64 1:0.27.1-4.el7 popt.x86_64 0:1.13-16.el7 pth.x86_64 0:2.0.7-23.el7 pygpgme.x86_64 0:0.3-9.el7 pyliblzma.x86_64 0:0.5.3-11.el7 python.x86_64 0:2.7.5-48.el7 python-chardet.noarch 0:2.2.1-1.el7_1 python-iniparse.noarch 0:0.4-9.el7 python-kitchen.noarch 0:1.1.1-5.el7 python-libs.x86_64 0:2.7.5-48.el7 python-pycurl.x86_64 0:7.19.0-19.el7 python-urlgrabber.noarch 0:3.10-8.el7 pyxattr.x86_64 0:0.5.1-5.el7 readline.x86_64 0:6.2-9.el7 rpm.x86_64 0:4.11.3-21.el7 rpm-build-libs.x86_64 0:4.11.3-21.el7 rpm-libs.x86_64 0:4.11.3-21.el7 rpm-python.x86_64 0:4.11.3-21.el7 sed.x86_64 0:4.2.2-5.el7 setup.noarch 0:2.8.71-7.el7 shared-mime-info.x86_64 0:1.1-9.el7 sqlite.x86_64 0:3.7.17-8.el7 tzdata.noarch 0:2017b-1.el7 ustr.x86_64 0:1.0.4-16.el7 xz-libs.x86_64 0:5.2.2-1.el7 yum-metadata-parser.x86_64 0:1.1.4-10.el7 yum-plugin-fastestmirror.noarch 0:1.1.31-40.el7 zlib.x86_64 0:1.2.7-17.el7 Complete! Yum command has been deprecated, use dnf instead. See 'man dnf' and 'man yum2dnf' for more information. copr_base | 3.9 kB 00:00 copr_denisarnaud_boost157 | 3.0 kB 00:00 copr_loveshack_dts6 | 3.0 kB 00:00 https://copr-be.cloud.fedoraproject.org/results/mlampe/devtoolset-4.1/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. copr_praiskup_autotools | 3.0 kB 00:00 copr_base/primary_db | 213 kB 00:00 Resolving Dependencies --> Running transaction check ---> Package scl-utils-build.x86_64 0:20130529-17.el7_1 will be installed --> Processing Dependency: redhat-rpm-config for package: scl-utils-build-20130529-17.el7_1.x86_64 --> Processing Dependency: iso-codes for package: scl-utils-build-20130529-17.el7_1.x86_64 --> Running transaction check ---> Package iso-codes.noarch 0:3.46-2.el7 will be installed --> Processing Dependency: xml-common for package: iso-codes-3.46-2.el7.noarch ---> Package redhat-rpm-config.noarch 0:9.1.0-72.el7.centos will be installed --> Processing Dependency: dwz >= 0.4 for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: zip for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: perl-srpm-macros for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: perl(Getopt::Long) for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: /usr/bin/perl for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Running transaction check ---> Package dwz.x86_64 0:0.11-3.el7 will be installed ---> Package perl.x86_64 4:5.16.3-291.el7 will be installed --> Processing Dependency: perl-libs = 4:5.16.3-291.el7 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Socket) >= 1.3 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) >= 1.10 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl-macros for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl-libs for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(threads::shared) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(threads) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(constant) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Time::Local) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Time::HiRes) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Storable) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Socket) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::XHTML) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::Search) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Filter::Util::Call) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Temp) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec::Unix) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec::Functions) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Path) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Exporter) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Cwd) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Carp) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: libperl.so()(64bit) for package: 4:perl-5.16.3-291.el7.x86_64 ---> Package perl-Getopt-Long.noarch 0:2.40-2.el7 will be installed --> Processing Dependency: perl(Pod::Usage) >= 1.14 for package: perl-Getopt-Long-2.40-2.el7.noarch --> Processing Dependency: perl(Text::ParseWords) for package: perl-Getopt-Long-2.40-2.el7.noarch ---> Package perl-srpm-macros.noarch 0:1-8.el7 will be installed ---> Package xml-common.noarch 0:0.6.3-39.el7 will be installed ---> Package zip.x86_64 0:3.0-11.el7 will be installed --> Running transaction check ---> Package perl-Carp.noarch 0:1.26-244.el7 will be installed ---> Package perl-Exporter.noarch 0:5.68-3.el7 will be installed ---> Package perl-File-Path.noarch 0:2.09-2.el7 will be installed ---> Package perl-File-Temp.noarch 0:0.23.01-3.el7 will be installed ---> Package perl-Filter.x86_64 0:1.49-3.el7 will be installed ---> Package perl-PathTools.x86_64 0:3.40-5.el7 will be installed ---> Package perl-Pod-Simple.noarch 1:3.28-4.el7 will be installed --> Processing Dependency: perl(Pod::Escapes) >= 1.04 for package: 1:perl-Pod-Simple-3.28-4.el7.noarch --> Processing Dependency: perl(Encode) for package: 1:perl-Pod-Simple-3.28-4.el7.noarch ---> Package perl-Pod-Usage.noarch 0:1.63-3.el7 will be installed --> Processing Dependency: perl(Pod::Text) >= 3.15 for package: perl-Pod-Usage-1.63-3.el7.noarch --> Processing Dependency: perl-Pod-Perldoc for package: perl-Pod-Usage-1.63-3.el7.noarch ---> Package perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 will be installed ---> Package perl-Socket.x86_64 0:2.010-4.el7 will be installed ---> Package perl-Storable.x86_64 0:2.45-3.el7 will be installed ---> Package perl-Text-ParseWords.noarch 0:3.29-4.el7 will be installed ---> Package perl-Time-HiRes.x86_64 4:1.9725-3.el7 will be installed ---> Package perl-Time-Local.noarch 0:1.2300-2.el7 will be installed ---> Package perl-constant.noarch 0:1.27-2.el7 will be installed ---> Package perl-libs.x86_64 4:5.16.3-291.el7 will be installed ---> Package perl-macros.x86_64 4:5.16.3-291.el7 will be installed ---> Package perl-threads.x86_64 0:1.87-4.el7 will be installed ---> Package perl-threads-shared.x86_64 0:1.43-6.el7 will be installed --> Running transaction check ---> Package perl-Encode.x86_64 0:2.51-7.el7 will be installed ---> Package perl-Pod-Escapes.noarch 1:1.04-291.el7 will be installed ---> Package perl-Pod-Perldoc.noarch 0:3.20-4.el7 will be installed --> Processing Dependency: perl(parent) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: perl(HTTP::Tiny) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: groff-base for package: perl-Pod-Perldoc-3.20-4.el7.noarch ---> Package perl-podlators.noarch 0:2.5.1-3.el7 will be installed --> Running transaction check ---> Package groff-base.x86_64 0:1.22.2-8.el7 will be installed ---> Package perl-HTTP-Tiny.noarch 0:0.033-3.el7 will be installed ---> Package perl-parent.noarch 1:0.225-244.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: scl-utils-build x86_64 20130529-17.el7_1 base 17 k Installing for dependencies: dwz x86_64 0.11-3.el7 base 99 k groff-base x86_64 1.22.2-8.el7 base 942 k iso-codes noarch 3.46-2.el7 base 2.7 M perl x86_64 4:5.16.3-291.el7 base 8.0 M perl-Carp noarch 1.26-244.el7 base 19 k perl-Encode x86_64 2.51-7.el7 base 1.5 M perl-Exporter noarch 5.68-3.el7 base 28 k perl-File-Path noarch 2.09-2.el7 base 26 k perl-File-Temp noarch 0.23.01-3.el7 base 56 k perl-Filter x86_64 1.49-3.el7 base 76 k perl-Getopt-Long noarch 2.40-2.el7 base 56 k perl-HTTP-Tiny noarch 0.033-3.el7 base 38 k perl-PathTools x86_64 3.40-5.el7 base 82 k perl-Pod-Escapes noarch 1:1.04-291.el7 base 51 k perl-Pod-Perldoc noarch 3.20-4.el7 base 87 k perl-Pod-Simple noarch 1:3.28-4.el7 base 216 k perl-Pod-Usage noarch 1.63-3.el7 base 27 k perl-Scalar-List-Utils x86_64 1.27-248.el7 base 36 k perl-Socket x86_64 2.010-4.el7 base 49 k perl-Storable x86_64 2.45-3.el7 base 77 k perl-Text-ParseWords noarch 3.29-4.el7 base 14 k perl-Time-HiRes x86_64 4:1.9725-3.el7 base 45 k perl-Time-Local noarch 1.2300-2.el7 base 24 k perl-constant noarch 1.27-2.el7 base 19 k perl-libs x86_64 4:5.16.3-291.el7 base 688 k perl-macros x86_64 4:5.16.3-291.el7 base 43 k perl-parent noarch 1:0.225-244.el7 base 12 k perl-podlators noarch 2.5.1-3.el7 base 112 k perl-srpm-macros noarch 1-8.el7 base 4.6 k perl-threads x86_64 1.87-4.el7 base 49 k perl-threads-shared x86_64 1.43-6.el7 base 39 k redhat-rpm-config noarch 9.1.0-72.el7.centos base 78 k xml-common noarch 0.6.3-39.el7 base 26 k zip x86_64 3.0-11.el7 base 260 k Transaction Summary ================================================================================ Install 1 Package (+34 Dependent packages) Total download size: 15 M Installed size: 55 M Downloading packages: (1/35): dwz-0.11-3.el7.x86_64.rpm | 99 kB 00:00 (2/35): groff-base-1.22.2-8.el7.x86_64.rpm | 942 kB 00:00 (3/35): iso-codes-3.46-2.el7.noarch.rpm | 2.7 MB 00:00 (4/35): perl-Carp-1.26-244.el7.noarch.rpm | 19 kB 00:00 (5/35): perl-Encode-2.51-7.el7.x86_64.rpm | 1.5 MB 00:00 (6/35): perl-Exporter-5.68-3.el7.noarch.rpm | 28 kB 00:00 (7/35): perl-5.16.3-291.el7.x86_64.rpm | 8.0 MB 00:00 (8/35): perl-File-Path-2.09-2.el7.noarch.rpm | 26 kB 00:00 (9/35): perl-File-Temp-0.23.01-3.el7.noarch.rpm | 56 kB 00:00 (10/35): perl-Filter-1.49-3.el7.x86_64.rpm | 76 kB 00:00 (11/35): perl-Getopt-Long-2.40-2.el7.noarch.rpm | 56 kB 00:00 (12/35): perl-HTTP-Tiny-0.033-3.el7.noarch.rpm | 38 kB 00:00 (13/35): perl-PathTools-3.40-5.el7.x86_64.rpm | 82 kB 00:00 (14/35): perl-Pod-Escapes-1.04-291.el7.noarch.rpm | 51 kB 00:00 (15/35): perl-Pod-Perldoc-3.20-4.el7.noarch.rpm | 87 kB 00:00 (16/35): perl-Pod-Simple-3.28-4.el7.noarch.rpm | 216 kB 00:00 (17/35): perl-Pod-Usage-1.63-3.el7.noarch.rpm | 27 kB 00:00 (18/35): perl-Scalar-List-Utils-1.27-248.el7.x86_64.rpm | 36 kB 00:00 (19/35): perl-Socket-2.010-4.el7.x86_64.rpm | 49 kB 00:00 (20/35): perl-Storable-2.45-3.el7.x86_64.rpm | 77 kB 00:00 (21/35): perl-Text-ParseWords-3.29-4.el7.noarch.rpm | 14 kB 00:00 (22/35): perl-Time-HiRes-1.9725-3.el7.x86_64.rpm | 45 kB 00:00 (23/35): perl-Time-Local-1.2300-2.el7.noarch.rpm | 24 kB 00:00 (24/35): perl-constant-1.27-2.el7.noarch.rpm | 19 kB 00:00 (25/35): perl-macros-5.16.3-291.el7.x86_64.rpm | 43 kB 00:00 (26/35): perl-libs-5.16.3-291.el7.x86_64.rpm | 688 kB 00:00 (27/35): perl-parent-0.225-244.el7.noarch.rpm | 12 kB 00:00 (28/35): perl-podlators-2.5.1-3.el7.noarch.rpm | 112 kB 00:00 (29/35): perl-srpm-macros-1-8.el7.noarch.rpm | 4.6 kB 00:00 (30/35): perl-threads-1.87-4.el7.x86_64.rpm | 49 kB 00:00 (31/35): perl-threads-shared-1.43-6.el7.x86_64.rpm | 39 kB 00:00 (32/35): redhat-rpm-config-9.1.0-72.el7.centos.noarch.rpm | 78 kB 00:00 (33/35): scl-utils-build-20130529-17.el7_1.x86_64.rpm | 17 kB 00:00 (34/35): xml-common-0.6.3-39.el7.noarch.rpm | 26 kB 00:00 (35/35): zip-3.0-11.el7.x86_64.rpm | 260 kB 00:00 -------------------------------------------------------------------------------- Total 15 MB/s | 15 MB 00:01 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : dwz-0.11-3.el7.x86_64 [ ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [#### ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [######### ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [############## ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [################### ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [######################## ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [########################### ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [############################ ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [################################ ] 1/35 Installing : dwz-0.11-3.el7.x86_64 [################################# ] 1/35 Installing : dwz-0.11-3.el7.x86_64 1/35 Installing : xml-common-0.6.3-39.el7.noa [ ] 2/35 Installing : xml-common-0.6.3-39.el7.noa [# ] 2/35 Installing : 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[ ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [# ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [####### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [######### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [############## ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [############### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [################ ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [################# ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [################### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [##################### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [###################### ] 34/35 Installing : redhat-rpm-config-9.1.0-72. [########################### ] 34/35 Installing : redhat-rpm-config-9.1.0-72.el7.centos.noarch 34/35 Installing : scl-utils-build-20130529-17 [ ] 35/35 Installing : scl-utils-build-20130529-17 [################### ] 35/35 Installing : scl-utils-build-20130529-17 [##################### ] 35/35 Installing : scl-utils-build-20130529-17 [########################## ] 35/35 Installing : scl-utils-build-20130529-17 [########################### ] 35/35 Installing : scl-utils-build-20130529-17.el7_1.x86_64 35/35 Verifying : perl-HTTP-Tiny-0.033-3.el7.noarch 1/35 Verifying : perl-threads-shared-1.43-6.el7.x86_64 2/35 Verifying : perl-Storable-2.45-3.el7.x86_64 3/35 Verifying : zip-3.0-11.el7.x86_64 4/35 Verifying : perl-Exporter-5.68-3.el7.noarch 5/35 Verifying : perl-constant-1.27-2.el7.noarch 6/35 Verifying : perl-PathTools-3.40-5.el7.x86_64 7/35 Verifying : 1:perl-Pod-Escapes-1.04-291.el7.noarch 8/35 Verifying : redhat-rpm-config-9.1.0-72.el7.centos.noarch 9/35 Verifying : perl-srpm-macros-1-8.el7.noarch 10/35 Verifying : groff-base-1.22.2-8.el7.x86_64 11/35 Verifying : perl-File-Temp-0.23.01-3.el7.noarch 12/35 Verifying : 1:perl-Pod-Simple-3.28-4.el7.noarch 13/35 Verifying : scl-utils-build-20130529-17.el7_1.x86_64 14/35 Verifying : perl-Time-Local-1.2300-2.el7.noarch 15/35 Verifying : perl-Pod-Perldoc-3.20-4.el7.noarch 16/35 Verifying : perl-Socket-2.010-4.el7.x86_64 17/35 Verifying : perl-Carp-1.26-244.el7.noarch 18/35 Verifying : 1:perl-parent-0.225-244.el7.noarch 19/35 Verifying : 4:perl-Time-HiRes-1.9725-3.el7.x86_64 20/35 Verifying : perl-Scalar-List-Utils-1.27-248.el7.x86_64 21/35 Verifying : 4:perl-libs-5.16.3-291.el7.x86_64 22/35 Verifying : 4:perl-macros-5.16.3-291.el7.x86_64 23/35 Verifying : perl-Pod-Usage-1.63-3.el7.noarch 24/35 Verifying : perl-Encode-2.51-7.el7.x86_64 25/35 Verifying : xml-common-0.6.3-39.el7.noarch 26/35 Verifying : perl-podlators-2.5.1-3.el7.noarch 27/35 Verifying : perl-Getopt-Long-2.40-2.el7.noarch 28/35 Verifying : perl-File-Path-2.09-2.el7.noarch 29/35 Verifying : 4:perl-5.16.3-291.el7.x86_64 30/35 Verifying : perl-threads-1.87-4.el7.x86_64 31/35 Verifying : perl-Filter-1.49-3.el7.x86_64 32/35 Verifying : dwz-0.11-3.el7.x86_64 33/35 Verifying : perl-Text-ParseWords-3.29-4.el7.noarch 34/35 Verifying : iso-codes-3.46-2.el7.noarch 35/35 Installed: scl-utils-build.x86_64 0:20130529-17.el7_1 Dependency Installed: dwz.x86_64 0:0.11-3.el7 groff-base.x86_64 0:1.22.2-8.el7 iso-codes.noarch 0:3.46-2.el7 perl.x86_64 4:5.16.3-291.el7 perl-Carp.noarch 0:1.26-244.el7 perl-Encode.x86_64 0:2.51-7.el7 perl-Exporter.noarch 0:5.68-3.el7 perl-File-Path.noarch 0:2.09-2.el7 perl-File-Temp.noarch 0:0.23.01-3.el7 perl-Filter.x86_64 0:1.49-3.el7 perl-Getopt-Long.noarch 0:2.40-2.el7 perl-HTTP-Tiny.noarch 0:0.033-3.el7 perl-PathTools.x86_64 0:3.40-5.el7 perl-Pod-Escapes.noarch 1:1.04-291.el7 perl-Pod-Perldoc.noarch 0:3.20-4.el7 perl-Pod-Simple.noarch 1:3.28-4.el7 perl-Pod-Usage.noarch 0:1.63-3.el7 perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 perl-Socket.x86_64 0:2.010-4.el7 perl-Storable.x86_64 0:2.45-3.el7 perl-Text-ParseWords.noarch 0:3.29-4.el7 perl-Time-HiRes.x86_64 4:1.9725-3.el7 perl-Time-Local.noarch 0:1.2300-2.el7 perl-constant.noarch 0:1.27-2.el7 perl-libs.x86_64 4:5.16.3-291.el7 perl-macros.x86_64 4:5.16.3-291.el7 perl-parent.noarch 1:0.225-244.el7 perl-podlators.noarch 0:2.5.1-3.el7 perl-srpm-macros.noarch 0:1-8.el7 perl-threads.x86_64 0:1.87-4.el7 perl-threads-shared.x86_64 0:1.43-6.el7 redhat-rpm-config.noarch 0:9.1.0-72.el7.centos xml-common.noarch 0:0.6.3-39.el7 zip.x86_64 0:3.0-11.el7 Complete! Finish(bootstrap): yum install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/583334-epel-7-x86_64/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Start: yum install Failed to set locale, defaulting to C copr_base | 3.9 kB 00:00 copr_denisarnaud_boost157 | 3.0 kB 00:00 copr_loveshack_dts6 | 3.0 kB 00:00 https://copr-be.cloud.fedoraproject.org/results/mlampe/devtoolset-4.1/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. To address this issue please refer to the below knowledge base article https://access.redhat.com/articles/1320623 If above article doesn't help to resolve this issue please create a bug on https://bugs.centos.org/ copr_praiskup_autotools | 3.0 kB 00:00 base | 3.6 kB 00:00 epel | 4.3 kB 00:00 extras | 3.4 kB 00:00 updates | 3.4 kB 00:00 base/group_gz | 155 kB 00:00 epel/group_gz | 170 kB 00:00 Resolving Dependencies --> Running transaction check ---> Package bash.x86_64 0:4.2.46-21.el7_3 will be installed --> Processing Dependency: rtld(GNU_HASH) for package: bash-4.2.46-21.el7_3.x86_64 --> Processing Dependency: libdl.so.2(GLIBC_2.2.5)(64bit) for package: bash-4.2.46-21.el7_3.x86_64 --> Processing Dependency: libc.so.6(GLIBC_2.8)(64bit) for package: bash-4.2.46-21.el7_3.x86_64 --> Processing Dependency: libtinfo.so.5()(64bit) for package: bash-4.2.46-21.el7_3.x86_64 --> Processing Dependency: libdl.so.2()(64bit) for package: bash-4.2.46-21.el7_3.x86_64 ---> Package bzip2.x86_64 0:1.0.6-13.el7 will be installed --> Processing Dependency: bzip2-libs = 1.0.6-13.el7 for package: bzip2-1.0.6-13.el7.x86_64 --> Processing Dependency: libbz2.so.1()(64bit) for package: bzip2-1.0.6-13.el7.x86_64 ---> Package coreutils.x86_64 0:8.22-18.el7 will be installed --> Processing Dependency: ncurses for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcrypto.so.10(libcrypto.so.10)(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libattr.so.1(ATTR_1.1)(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libacl.so.1(ACL_1.0)(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: gmp for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libselinux.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libgmp.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcrypto.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libcap.so.2()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libattr.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64 --> Processing Dependency: libacl.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64 ---> Package cpio.x86_64 0:2.11-24.el7 will be installed ---> Package diffutils.x86_64 0:3.3-4.el7 will be installed ---> Package epel-release.noarch 0:7-10 will be installed --> Processing Dependency: redhat-release >= 7 for package: epel-release-7-10.noarch ---> Package epel-rpm-macros.noarch 0:7-13 will be installed --> Processing Dependency: python2-rpm-macros for package: epel-rpm-macros-7-13.noarch --> Processing Dependency: python-srpm-macros for package: epel-rpm-macros-7-13.noarch --> Processing Dependency: python-rpm-macros for package: epel-rpm-macros-7-13.noarch ---> Package findutils.x86_64 1:4.5.11-5.el7 will be installed ---> Package gawk.x86_64 0:4.0.2-4.el7_3.1 will be installed ---> Package gcc.x86_64 0:4.8.5-11.el7 will be installed --> Processing Dependency: libgomp = 4.8.5-11.el7 for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: cpp = 4.8.5-11.el7 for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libgcc >= 4.8.5-11.el7 for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: glibc-devel >= 2.2.90-12 for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: binutils >= 2.20.51.0.2-12 for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libz.so.1()(64bit) for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libmpfr.so.4()(64bit) for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libmpc.so.3()(64bit) for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libgomp.so.1()(64bit) for package: gcc-4.8.5-11.el7.x86_64 --> Processing Dependency: libgcc_s.so.1()(64bit) for package: gcc-4.8.5-11.el7.x86_64 ---> Package gcc-c++.x86_64 0:4.8.5-11.el7 will be installed --> Processing Dependency: libstdc++-devel = 4.8.5-11.el7 for package: gcc-c++-4.8.5-11.el7.x86_64 --> Processing Dependency: libstdc++ = 4.8.5-11.el7 for package: gcc-c++-4.8.5-11.el7.x86_64 --> Processing Dependency: libstdc++.so.6()(64bit) for package: gcc-c++-4.8.5-11.el7.x86_64 ---> Package grep.x86_64 0:2.20-2.el7 will be installed --> Processing Dependency: libpcre.so.1()(64bit) for package: grep-2.20-2.el7.x86_64 ---> Package gzip.x86_64 0:1.5-8.el7 will be installed ---> Package info.x86_64 0:5.1-4.el7 will be installed ---> Package make.x86_64 1:3.82-23.el7 will be installed ---> Package patch.x86_64 0:2.7.1-8.el7 will be installed ---> Package redhat-rpm-config.noarch 0:9.1.0-72.el7.centos will be installed --> Processing Dependency: rpm >= 4.9.0 for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: dwz >= 0.4 for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: zip for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: perl-srpm-macros for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: perl(Getopt::Long) for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch --> Processing Dependency: /usr/bin/perl for package: redhat-rpm-config-9.1.0-72.el7.centos.noarch ---> Package rpm-build.x86_64 0:4.11.3-21.el7 will be installed --> Processing Dependency: pkgconfig >= 1:0.24 for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: elfutils >= 0.128 for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: perl(threads) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: perl(Thread::Queue) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: perl(File::Temp) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libpopt.so.0(LIBPOPT_0)(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libelf.so.1(ELFUTILS_1.0)(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: file for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: /usr/bin/gdb-add-index for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: librpmio.so.3()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: librpmbuild.so.3()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: librpm.so.3()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libpopt.so.0()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libnss3.so()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libmagic.so.1()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: liblzma.so.5()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: liblua-5.1.so()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libelf.so.1()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 --> Processing Dependency: libdb-5.3.so()(64bit) for package: rpm-build-4.11.3-21.el7.x86_64 ---> Package sed.x86_64 0:4.2.2-5.el7 will be installed ---> Package shadow-utils.x86_64 2:4.1.5.1-24.el7 will be installed --> Processing Dependency: audit-libs >= 1.6.5 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: setup for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1(LIBSEMANAGE_1.0)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libaudit.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 ---> Package tar.x86_64 2:1.26-31.el7 will be installed ---> Package unzip.x86_64 0:6.0-16.el7 will be installed ---> Package util-linux.x86_64 0:2.23.2-33.el7_3.2 will be installed --> Processing Dependency: libuuid = 2.23.2-33.el7_3.2 for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount = 2.23.2-33.el7_3.2 for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid = 2.23.2-33.el7_3.2 for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: pam >= 1.1.3-7 for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libuuid.so.1(UUID_1.0)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libutempter.so.0(UTEMPTER_1.1)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libudev.so.1(LIBUDEV_183)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libsystemd.so.0(LIBSYSTEMD_209)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libpam_misc.so.0(LIBPAM_MISC_1.0)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libpam.so.0(LIBPAM_1.0)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.25)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.23)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.22)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.21)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.20)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.19)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.21)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.20)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.18)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.17)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.15)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_1.0)(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: /etc/pam.d/system-auth for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libuuid.so.1()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libutempter.so.0()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libuser.so.1()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libudev.so.1()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libsystemd.so.0()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libpam_misc.so.0()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libpam.so.0()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libmount.so.1()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libcap-ng.so.0()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 --> Processing Dependency: libblkid.so.1()(64bit) for package: util-linux-2.23.2-33.el7_3.2.x86_64 ---> Package which.x86_64 0:2.20-7.el7 will be installed ---> Package xz.x86_64 0:5.2.2-1.el7 will be installed --> Running transaction check ---> Package audit-libs.x86_64 0:2.6.5-3.el7_3.1 will be installed ---> Package binutils.x86_64 0:2.25.1-22.base.el7 will be installed --> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.25.1-22.base.el7.x86_64 --> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.25.1-22.base.el7.x86_64 ---> Package bzip2-libs.x86_64 0:1.0.6-13.el7 will be installed ---> Package centos-release.x86_64 0:7-3.1611.el7.centos will be installed ---> Package cpp.x86_64 0:4.8.5-11.el7 will be installed --> Processing Dependency: filesystem >= 3 for package: cpp-4.8.5-11.el7.x86_64 ---> Package dwz.x86_64 0:0.11-3.el7 will be installed ---> Package elfutils.x86_64 0:0.166-2.el7 will be installed --> Processing Dependency: elfutils-libs(x86-64) = 0.166-2.el7 for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.165)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.158)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.149)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.148)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.138)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.130)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.127)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.126)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.122)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libasm.so.1(ELFUTILS_1.0)(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libdw.so.1()(64bit) for package: elfutils-0.166-2.el7.x86_64 --> Processing Dependency: libasm.so.1()(64bit) for package: elfutils-0.166-2.el7.x86_64 ---> Package elfutils-libelf.x86_64 0:0.166-2.el7 will be installed ---> Package file.x86_64 0:5.11-33.el7 will be installed ---> Package file-libs.x86_64 0:5.11-33.el7 will be installed ---> Package gdb.x86_64 0:7.6.1-94.el7 will be installed --> Processing Dependency: libreadline.so.6()(64bit) for package: gdb-7.6.1-94.el7.x86_64 --> Processing Dependency: libpython2.7.so.1.0()(64bit) for package: gdb-7.6.1-94.el7.x86_64 --> Processing Dependency: libexpat.so.1()(64bit) for package: gdb-7.6.1-94.el7.x86_64 ---> Package glibc.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: glibc-common = 2.17-157.el7_3.5 for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: libfreebl3.so(NSSRAWHASH_3.12.3)(64bit) for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: basesystem for package: glibc-2.17-157.el7_3.5.x86_64 --> Processing Dependency: libfreebl3.so()(64bit) for package: glibc-2.17-157.el7_3.5.x86_64 ---> Package glibc-devel.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: glibc-headers = 2.17-157.el7_3.5 for package: glibc-devel-2.17-157.el7_3.5.x86_64 --> Processing Dependency: glibc-headers for package: glibc-devel-2.17-157.el7_3.5.x86_64 ---> Package gmp.x86_64 1:6.0.0-12.el7_1 will be installed ---> Package libacl.x86_64 0:2.2.51-12.el7 will be installed ---> Package libattr.x86_64 0:2.4.46-12.el7 will be installed ---> Package libblkid.x86_64 0:2.23.2-33.el7_3.2 will be installed ---> Package libcap.x86_64 0:2.22-8.el7 will be installed ---> Package libcap-ng.x86_64 0:0.7.5-4.el7 will be installed ---> Package libdb.x86_64 0:5.3.21-19.el7 will be installed ---> Package libgcc.x86_64 0:4.8.5-11.el7 will be installed ---> Package libgomp.x86_64 0:4.8.5-11.el7 will be installed ---> Package libmount.x86_64 0:2.23.2-33.el7_3.2 will be installed ---> Package libmpc.x86_64 0:1.0.1-3.el7 will be installed ---> Package libselinux.x86_64 0:2.5-6.el7 will be installed --> Processing Dependency: libsepol(x86-64) >= 2.5-6 for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: libsepol.so.1(LIBSEPOL_1.0)(64bit) for package: libselinux-2.5-6.el7.x86_64 --> Processing Dependency: libsepol.so.1()(64bit) for package: libselinux-2.5-6.el7.x86_64 ---> Package libsemanage.x86_64 0:2.5-5.1.el7_3 will be installed --> Processing Dependency: libustr-1.0.so.1(USTR_1.0.1)(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: libustr-1.0.so.1(USTR_1.0)(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 --> Processing Dependency: libustr-1.0.so.1()(64bit) for package: libsemanage-2.5-5.1.el7_3.x86_64 ---> Package libstdc++.x86_64 0:4.8.5-11.el7 will be installed ---> Package libstdc++-devel.x86_64 0:4.8.5-11.el7 will be installed ---> Package libuser.x86_64 0:0.60-7.el7_1 will be installed --> Processing Dependency: libldap-2.4.so.2()(64bit) for package: libuser-0.60-7.el7_1.x86_64 --> Processing Dependency: libgobject-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64 --> Processing Dependency: libgmodule-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64 --> Processing Dependency: libglib-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64 ---> Package libutempter.x86_64 0:1.1.6-4.el7 will be installed ---> Package libuuid.x86_64 0:2.23.2-33.el7_3.2 will be installed ---> Package lua.x86_64 0:5.1.4-15.el7 will be installed ---> Package mpfr.x86_64 0:3.1.1-4.el7 will be installed ---> Package ncurses.x86_64 0:5.9-13.20130511.el7 will be installed ---> Package ncurses-libs.x86_64 0:5.9-13.20130511.el7 will be installed --> Processing Dependency: ncurses-base = 5.9-13.20130511.el7 for package: ncurses-libs-5.9-13.20130511.el7.x86_64 ---> Package nss.x86_64 0:3.28.4-1.2.el7_3 will be installed --> Processing Dependency: nss-util >= 3.28.2-1.1 for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: nss-softokn(x86-64) >= 3.16.2.3-14.2 for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: nspr >= 4.13.1 for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: nss-system-init for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.24)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.21)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.17.1)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.15)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.14)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.13)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.5)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.3)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12)(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libsoftokn3.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libplds4.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libplc4.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssutil3.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnssdbm3.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 --> Processing Dependency: libnspr4.so()(64bit) for package: nss-3.28.4-1.2.el7_3.x86_64 ---> Package openssl-libs.x86_64 1:1.0.1e-60.el7_3.1 will be installed --> Processing Dependency: ca-certificates >= 2008-5 for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libkrb5.so.3(krb5_3_MIT)(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libk5crypto.so.3(k5crypto_3_MIT)(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libkrb5.so.3()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libk5crypto.so.3()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libgssapi_krb5.so.2()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 --> Processing Dependency: libcom_err.so.2()(64bit) for package: 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64 ---> Package pam.x86_64 0:1.1.8-18.el7 will be installed --> Processing Dependency: libpwquality >= 0.9.9 for package: pam-1.1.8-18.el7.x86_64 --> Processing Dependency: cracklib-dicts >= 2.8 for package: pam-1.1.8-18.el7.x86_64 --> Processing Dependency: libcrack.so.2()(64bit) for package: pam-1.1.8-18.el7.x86_64 ---> Package pcre.x86_64 0:8.32-15.el7_2.1 will be installed ---> Package perl.x86_64 4:5.16.3-291.el7 will be installed --> Processing Dependency: perl-libs = 4:5.16.3-291.el7 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Socket) >= 1.3 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) >= 1.10 for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl-macros for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl-libs for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(threads::shared) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(constant) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Time::Local) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Time::HiRes) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Storable) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Socket) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::XHTML) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::Search) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Filter::Util::Call) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec::Unix) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec::Functions) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Spec) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(File::Path) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Exporter) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Cwd) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: perl(Carp) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: libperl.so()(64bit) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: libgdbm_compat.so.4()(64bit) for package: 4:perl-5.16.3-291.el7.x86_64 --> Processing Dependency: libgdbm.so.4()(64bit) for package: 4:perl-5.16.3-291.el7.x86_64 ---> Package perl-File-Temp.noarch 0:0.23.01-3.el7 will be installed ---> Package perl-Getopt-Long.noarch 0:2.40-2.el7 will be installed --> Processing Dependency: perl(Pod::Usage) >= 1.14 for package: perl-Getopt-Long-2.40-2.el7.noarch --> Processing Dependency: perl(Text::ParseWords) for package: perl-Getopt-Long-2.40-2.el7.noarch ---> Package perl-Thread-Queue.noarch 0:3.02-2.el7 will be installed ---> Package perl-srpm-macros.noarch 0:1-8.el7 will be installed ---> Package perl-threads.x86_64 0:1.87-4.el7 will be installed ---> Package pkgconfig.x86_64 1:0.27.1-4.el7 will be installed ---> Package popt.x86_64 0:1.13-16.el7 will be installed ---> Package python-rpm-macros.noarch 0:3-17.el7 will be installed ---> Package python-srpm-macros.noarch 0:3-17.el7 will be installed ---> Package python2-rpm-macros.noarch 0:3-17.el7 will be installed ---> Package rpm.x86_64 0:4.11.3-21.el7 will be installed --> Processing Dependency: curl for package: rpm-4.11.3-21.el7.x86_64 --> Processing Dependency: /usr/bin/db_stat for package: rpm-4.11.3-21.el7.x86_64 ---> Package rpm-build-libs.x86_64 0:4.11.3-21.el7 will be installed --> Processing Dependency: /usr/bin/gpg2 for package: rpm-build-libs-4.11.3-21.el7.x86_64 ---> Package rpm-libs.x86_64 0:4.11.3-21.el7 will be installed ---> Package setup.noarch 0:2.8.71-7.el7 will be installed ---> Package systemd-libs.x86_64 0:219-30.el7_3.9 will be installed --> Processing Dependency: libgcrypt.so.11(GCRYPT_1.2)(64bit) for package: systemd-libs-219-30.el7_3.9.x86_64 --> Processing Dependency: libgpg-error.so.0()(64bit) for package: systemd-libs-219-30.el7_3.9.x86_64 --> Processing Dependency: libgcrypt.so.11()(64bit) for package: systemd-libs-219-30.el7_3.9.x86_64 ---> Package xz-libs.x86_64 0:5.2.2-1.el7 will be installed ---> Package zip.x86_64 0:3.0-11.el7 will be installed ---> Package zlib.x86_64 0:1.2.7-17.el7 will be installed --> Running transaction check ---> Package basesystem.noarch 0:10.0-7.el7.centos will be installed ---> Package ca-certificates.noarch 0:2017.2.14-70.1.el7_3 will be installed --> Processing Dependency: p11-kit-trust >= 0.17.3 for package: ca-certificates-2017.2.14-70.1.el7_3.noarch --> Processing Dependency: p11-kit >= 0.17.3 for package: ca-certificates-2017.2.14-70.1.el7_3.noarch ---> Package chkconfig.x86_64 0:1.7.2-1.el7_3.1 will be installed ---> Package cracklib.x86_64 0:2.9.0-11.el7 will be installed ---> Package cracklib-dicts.x86_64 0:2.9.0-11.el7 will be installed ---> Package curl.x86_64 0:7.29.0-35.el7.centos will be installed --> Processing Dependency: libcurl = 7.29.0-35.el7.centos for package: curl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libcurl.so.4()(64bit) for package: curl-7.29.0-35.el7.centos.x86_64 ---> Package elfutils-libs.x86_64 0:0.166-2.el7 will be installed ---> Package expat.x86_64 0:2.1.0-10.el7_3 will be installed ---> Package filesystem.x86_64 0:3.2-21.el7 will be installed ---> Package gdbm.x86_64 0:1.10-8.el7 will be installed ---> Package glib2.x86_64 0:2.46.2-4.el7 will be installed --> Processing Dependency: shared-mime-info for package: glib2-2.46.2-4.el7.x86_64 --> Processing Dependency: libffi.so.6()(64bit) for package: glib2-2.46.2-4.el7.x86_64 ---> Package glibc-common.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: tzdata >= 2003a for package: glibc-common-2.17-157.el7_3.5.x86_64 ---> Package glibc-headers.x86_64 0:2.17-157.el7_3.5 will be installed --> Processing Dependency: kernel-headers >= 2.2.1 for package: glibc-headers-2.17-157.el7_3.5.x86_64 --> Processing Dependency: kernel-headers for package: glibc-headers-2.17-157.el7_3.5.x86_64 ---> Package gnupg2.x86_64 0:2.0.22-4.el7 will be installed --> Processing Dependency: pinentry for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libassuan.so.0(LIBASSUAN_1.0)(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libpth.so.20()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 --> Processing Dependency: libassuan.so.0()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64 ---> Package krb5-libs.x86_64 0:1.14.1-27.el7_3 will be installed --> Processing Dependency: keyutils-libs >= 1.5.8 for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.5)(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.0)(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_0.3)(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libverto.so.1()(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 --> Processing Dependency: libkeyutils.so.1()(64bit) for package: krb5-libs-1.14.1-27.el7_3.x86_64 ---> Package libcom_err.x86_64 0:1.42.9-9.el7 will be installed ---> Package libdb-utils.x86_64 0:5.3.21-19.el7 will be installed ---> Package libgcrypt.x86_64 0:1.5.3-13.el7_3.1 will be installed ---> Package libgpg-error.x86_64 0:1.12-3.el7 will be installed ---> Package libpwquality.x86_64 0:1.2.3-4.el7 will be installed ---> Package libsepol.x86_64 0:2.5-6.el7 will be installed ---> Package ncurses-base.noarch 0:5.9-13.20130511.el7 will be installed ---> Package nspr.x86_64 0:4.13.1-1.0.el7_3 will be installed ---> Package nss-softokn.x86_64 0:3.16.2.3-14.4.el7 will be installed --> Processing Dependency: libsqlite3.so.0()(64bit) for package: nss-softokn-3.16.2.3-14.4.el7.x86_64 ---> Package nss-softokn-freebl.x86_64 0:3.16.2.3-14.4.el7 will be installed ---> Package nss-sysinit.x86_64 0:3.28.4-1.2.el7_3 will be installed ---> Package nss-util.x86_64 0:3.28.4-1.0.el7_3 will be installed ---> Package openldap.x86_64 0:2.4.40-13.el7 will be installed --> Processing Dependency: nss-tools for package: openldap-2.4.40-13.el7.x86_64 --> Processing Dependency: libsasl2.so.3()(64bit) for package: openldap-2.4.40-13.el7.x86_64 ---> Package perl-Carp.noarch 0:1.26-244.el7 will be installed ---> Package perl-Exporter.noarch 0:5.68-3.el7 will be installed ---> Package perl-File-Path.noarch 0:2.09-2.el7 will be installed ---> Package perl-Filter.x86_64 0:1.49-3.el7 will be installed ---> Package perl-PathTools.x86_64 0:3.40-5.el7 will be installed ---> Package perl-Pod-Simple.noarch 1:3.28-4.el7 will be installed --> Processing Dependency: perl(Pod::Escapes) >= 1.04 for package: 1:perl-Pod-Simple-3.28-4.el7.noarch --> Processing Dependency: perl(Encode) for package: 1:perl-Pod-Simple-3.28-4.el7.noarch ---> Package perl-Pod-Usage.noarch 0:1.63-3.el7 will be installed --> Processing Dependency: perl(Pod::Text) >= 3.15 for package: perl-Pod-Usage-1.63-3.el7.noarch --> Processing Dependency: perl-Pod-Perldoc for package: perl-Pod-Usage-1.63-3.el7.noarch ---> Package perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 will be installed ---> Package perl-Socket.x86_64 0:2.010-4.el7 will be installed ---> Package perl-Storable.x86_64 0:2.45-3.el7 will be installed ---> Package perl-Text-ParseWords.noarch 0:3.29-4.el7 will be installed ---> Package perl-Time-HiRes.x86_64 4:1.9725-3.el7 will be installed ---> Package perl-Time-Local.noarch 0:1.2300-2.el7 will be installed ---> Package perl-constant.noarch 0:1.27-2.el7 will be installed ---> Package perl-libs.x86_64 4:5.16.3-291.el7 will be installed ---> Package perl-macros.x86_64 4:5.16.3-291.el7 will be installed ---> Package perl-threads-shared.x86_64 0:1.43-6.el7 will be installed ---> Package python-libs.x86_64 0:2.7.5-48.el7 will be installed ---> Package readline.x86_64 0:6.2-9.el7 will be installed ---> Package ustr.x86_64 0:1.0.4-16.el7 will be installed --> Running transaction check ---> Package cyrus-sasl-lib.x86_64 0:2.1.26-20.el7_2 will be installed ---> Package kernel-headers.x86_64 0:3.10.0-514.26.2.el7 will be installed ---> Package keyutils-libs.x86_64 0:1.5.8-3.el7 will be installed ---> Package libassuan.x86_64 0:2.1.0-3.el7 will be installed ---> Package libcurl.x86_64 0:7.29.0-35.el7.centos will be installed --> Processing Dependency: libssh2(x86-64) >= 1.4.3 for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libidn.so.11(LIBIDN_1.0)(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libssh2.so.1()(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 --> Processing Dependency: libidn.so.11()(64bit) for package: libcurl-7.29.0-35.el7.centos.x86_64 ---> Package libffi.x86_64 0:3.0.13-18.el7 will be installed ---> Package libverto.x86_64 0:0.2.5-4.el7 will be installed ---> Package nss-tools.x86_64 0:3.28.4-1.2.el7_3 will be installed ---> Package p11-kit.x86_64 0:0.20.7-3.el7 will be installed ---> Package p11-kit-trust.x86_64 0:0.20.7-3.el7 will be installed --> Processing Dependency: libtasn1.so.6(LIBTASN1_0_3)(64bit) for package: p11-kit-trust-0.20.7-3.el7.x86_64 --> Processing Dependency: libtasn1.so.6()(64bit) for package: p11-kit-trust-0.20.7-3.el7.x86_64 ---> Package perl-Encode.x86_64 0:2.51-7.el7 will be installed ---> Package perl-Pod-Escapes.noarch 1:1.04-291.el7 will be installed ---> Package perl-Pod-Perldoc.noarch 0:3.20-4.el7 will be installed --> Processing Dependency: perl(parent) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: perl(HTTP::Tiny) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: groff-base for package: perl-Pod-Perldoc-3.20-4.el7.noarch ---> Package perl-podlators.noarch 0:2.5.1-3.el7 will be installed ---> Package pinentry.x86_64 0:0.8.1-17.el7 will be installed ---> Package pth.x86_64 0:2.0.7-23.el7 will be installed ---> Package shared-mime-info.x86_64 0:1.1-9.el7 will be installed --> Processing Dependency: libxml2.so.2(LIBXML2_2.4.30)(64bit) for package: shared-mime-info-1.1-9.el7.x86_64 --> Processing Dependency: libxml2.so.2()(64bit) for package: shared-mime-info-1.1-9.el7.x86_64 ---> Package sqlite.x86_64 0:3.7.17-8.el7 will be installed ---> Package tzdata.noarch 0:2017b-1.el7 will be installed --> Running transaction check ---> Package groff-base.x86_64 0:1.22.2-8.el7 will be installed ---> Package libidn.x86_64 0:1.28-4.el7 will be installed ---> Package libssh2.x86_64 0:1.4.3-10.el7_2.1 will be installed ---> Package libtasn1.x86_64 0:3.8-3.el7 will be installed ---> Package libxml2.x86_64 0:2.9.1-6.el7_2.3 will be installed ---> Package perl-HTTP-Tiny.noarch 0:0.033-3.el7 will be installed ---> Package perl-parent.noarch 1:0.225-244.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing for group install "Buildsystem building group": bash x86_64 4.2.46-21.el7_3 updates 1.0 M bzip2 x86_64 1.0.6-13.el7 base 52 k coreutils x86_64 8.22-18.el7 base 3.3 M cpio x86_64 2.11-24.el7 base 210 k diffutils x86_64 3.3-4.el7 base 322 k epel-release noarch 7-10 epel 14 k epel-rpm-macros noarch 7-13 epel 12 k findutils x86_64 1:4.5.11-5.el7 base 559 k gawk x86_64 4.0.2-4.el7_3.1 updates 874 k gcc x86_64 4.8.5-11.el7 base 16 M gcc-c++ x86_64 4.8.5-11.el7 base 7.2 M grep x86_64 2.20-2.el7 base 344 k gzip x86_64 1.5-8.el7 base 129 k info x86_64 5.1-4.el7 base 233 k make x86_64 1:3.82-23.el7 base 420 k patch x86_64 2.7.1-8.el7 base 110 k redhat-rpm-config noarch 9.1.0-72.el7.centos base 78 k rpm-build x86_64 4.11.3-21.el7 base 145 k sed x86_64 4.2.2-5.el7 base 231 k shadow-utils x86_64 2:4.1.5.1-24.el7 base 1.1 M tar x86_64 2:1.26-31.el7 base 843 k unzip x86_64 6.0-16.el7 base 169 k util-linux x86_64 2.23.2-33.el7_3.2 updates 1.9 M which x86_64 2.20-7.el7 base 41 k xz x86_64 5.2.2-1.el7 base 229 k Installing for dependencies: audit-libs x86_64 2.6.5-3.el7_3.1 updates 85 k basesystem noarch 10.0-7.el7.centos base 5.0 k binutils x86_64 2.25.1-22.base.el7 base 5.4 M bzip2-libs x86_64 1.0.6-13.el7 base 40 k ca-certificates noarch 2017.2.14-70.1.el7_3 updates 438 k centos-release x86_64 7-3.1611.el7.centos base 23 k chkconfig x86_64 1.7.2-1.el7_3.1 updates 175 k cpp x86_64 4.8.5-11.el7 base 5.9 M cracklib x86_64 2.9.0-11.el7 base 80 k cracklib-dicts x86_64 2.9.0-11.el7 base 3.6 M curl x86_64 7.29.0-35.el7.centos base 265 k cyrus-sasl-lib x86_64 2.1.26-20.el7_2 base 155 k dwz x86_64 0.11-3.el7 base 99 k elfutils x86_64 0.166-2.el7 base 280 k elfutils-libelf x86_64 0.166-2.el7 base 208 k elfutils-libs x86_64 0.166-2.el7 base 262 k expat x86_64 2.1.0-10.el7_3 updates 81 k file x86_64 5.11-33.el7 base 57 k file-libs x86_64 5.11-33.el7 base 340 k filesystem x86_64 3.2-21.el7 base 1.0 M gdb x86_64 7.6.1-94.el7 base 2.4 M gdbm x86_64 1.10-8.el7 base 70 k glib2 x86_64 2.46.2-4.el7 base 2.3 M glibc x86_64 2.17-157.el7_3.5 updates 3.6 M glibc-common x86_64 2.17-157.el7_3.5 updates 11 M glibc-devel x86_64 2.17-157.el7_3.5 updates 1.1 M glibc-headers x86_64 2.17-157.el7_3.5 updates 669 k gmp x86_64 1:6.0.0-12.el7_1 base 280 k gnupg2 x86_64 2.0.22-4.el7 base 1.5 M groff-base x86_64 1.22.2-8.el7 base 942 k kernel-headers x86_64 3.10.0-514.26.2.el7 updates 4.8 M keyutils-libs x86_64 1.5.8-3.el7 base 25 k krb5-libs x86_64 1.14.1-27.el7_3 updates 740 k libacl x86_64 2.2.51-12.el7 base 27 k libassuan x86_64 2.1.0-3.el7 base 63 k libattr x86_64 2.4.46-12.el7 base 18 k libblkid x86_64 2.23.2-33.el7_3.2 updates 170 k libcap x86_64 2.22-8.el7 base 47 k libcap-ng x86_64 0.7.5-4.el7 base 25 k libcom_err x86_64 1.42.9-9.el7 base 40 k libcurl x86_64 7.29.0-35.el7.centos base 218 k libdb x86_64 5.3.21-19.el7 base 718 k libdb-utils x86_64 5.3.21-19.el7 base 102 k libffi x86_64 3.0.13-18.el7 base 30 k libgcc x86_64 4.8.5-11.el7 base 97 k libgcrypt x86_64 1.5.3-13.el7_3.1 updates 263 k libgomp x86_64 4.8.5-11.el7 base 152 k libgpg-error x86_64 1.12-3.el7 base 87 k libidn x86_64 1.28-4.el7 base 209 k libmount x86_64 2.23.2-33.el7_3.2 updates 172 k libmpc x86_64 1.0.1-3.el7 base 51 k libpwquality x86_64 1.2.3-4.el7 base 84 k libselinux x86_64 2.5-6.el7 base 161 k libsemanage x86_64 2.5-5.1.el7_3 updates 144 k libsepol x86_64 2.5-6.el7 base 288 k libssh2 x86_64 1.4.3-10.el7_2.1 base 134 k libstdc++ x86_64 4.8.5-11.el7 base 300 k libstdc++-devel x86_64 4.8.5-11.el7 base 1.5 M libtasn1 x86_64 3.8-3.el7 base 320 k libuser x86_64 0.60-7.el7_1 base 398 k libutempter x86_64 1.1.6-4.el7 base 25 k libuuid x86_64 2.23.2-33.el7_3.2 updates 76 k libverto x86_64 0.2.5-4.el7 base 16 k libxml2 x86_64 2.9.1-6.el7_2.3 base 668 k lua x86_64 5.1.4-15.el7 base 201 k mpfr x86_64 3.1.1-4.el7 base 203 k ncurses x86_64 5.9-13.20130511.el7 base 303 k ncurses-base noarch 5.9-13.20130511.el7 base 68 k ncurses-libs x86_64 5.9-13.20130511.el7 base 316 k nspr x86_64 4.13.1-1.0.el7_3 updates 126 k nss x86_64 3.28.4-1.2.el7_3 updates 872 k nss-softokn x86_64 3.16.2.3-14.4.el7 base 306 k nss-softokn-freebl x86_64 3.16.2.3-14.4.el7 base 204 k nss-sysinit x86_64 3.28.4-1.2.el7_3 updates 58 k nss-tools x86_64 3.28.4-1.2.el7_3 updates 496 k nss-util x86_64 3.28.4-1.0.el7_3 updates 73 k openldap x86_64 2.4.40-13.el7 base 350 k openssl-libs x86_64 1:1.0.1e-60.el7_3.1 updates 959 k p11-kit x86_64 0.20.7-3.el7 base 107 k p11-kit-trust x86_64 0.20.7-3.el7 base 126 k pam x86_64 1.1.8-18.el7 base 717 k pcre x86_64 8.32-15.el7_2.1 base 420 k perl x86_64 4:5.16.3-291.el7 base 8.0 M perl-Carp noarch 1.26-244.el7 base 19 k perl-Encode x86_64 2.51-7.el7 base 1.5 M perl-Exporter noarch 5.68-3.el7 base 28 k perl-File-Path noarch 2.09-2.el7 base 26 k perl-File-Temp noarch 0.23.01-3.el7 base 56 k perl-Filter x86_64 1.49-3.el7 base 76 k perl-Getopt-Long noarch 2.40-2.el7 base 56 k perl-HTTP-Tiny noarch 0.033-3.el7 base 38 k perl-PathTools x86_64 3.40-5.el7 base 82 k perl-Pod-Escapes noarch 1:1.04-291.el7 base 51 k perl-Pod-Perldoc noarch 3.20-4.el7 base 87 k perl-Pod-Simple noarch 1:3.28-4.el7 base 216 k perl-Pod-Usage noarch 1.63-3.el7 base 27 k perl-Scalar-List-Utils x86_64 1.27-248.el7 base 36 k perl-Socket x86_64 2.010-4.el7 base 49 k perl-Storable x86_64 2.45-3.el7 base 77 k perl-Text-ParseWords noarch 3.29-4.el7 base 14 k perl-Thread-Queue noarch 3.02-2.el7 base 17 k perl-Time-HiRes x86_64 4:1.9725-3.el7 base 45 k perl-Time-Local noarch 1.2300-2.el7 base 24 k perl-constant noarch 1.27-2.el7 base 19 k perl-libs x86_64 4:5.16.3-291.el7 base 688 k perl-macros x86_64 4:5.16.3-291.el7 base 43 k perl-parent noarch 1:0.225-244.el7 base 12 k perl-podlators noarch 2.5.1-3.el7 base 112 k perl-srpm-macros noarch 1-8.el7 base 4.6 k perl-threads x86_64 1.87-4.el7 base 49 k perl-threads-shared x86_64 1.43-6.el7 base 39 k pinentry x86_64 0.8.1-17.el7 base 73 k pkgconfig x86_64 1:0.27.1-4.el7 base 54 k popt x86_64 1.13-16.el7 base 42 k pth x86_64 2.0.7-23.el7 base 89 k python-libs x86_64 2.7.5-48.el7 base 5.6 M python-rpm-macros noarch 3-17.el7 epel 6.1 k python-srpm-macros noarch 3-17.el7 epel 5.9 k python2-rpm-macros noarch 3-17.el7 epel 5.6 k readline x86_64 6.2-9.el7 base 192 k rpm x86_64 4.11.3-21.el7 base 1.2 M rpm-build-libs x86_64 4.11.3-21.el7 base 104 k rpm-libs x86_64 4.11.3-21.el7 base 274 k setup noarch 2.8.71-7.el7 base 165 k shared-mime-info x86_64 1.1-9.el7 base 371 k sqlite x86_64 3.7.17-8.el7 base 393 k systemd-libs x86_64 219-30.el7_3.9 updates 369 k tzdata noarch 2017b-1.el7 updates 443 k ustr x86_64 1.0.4-16.el7 base 92 k xz-libs x86_64 5.2.2-1.el7 base 103 k zip x86_64 3.0-11.el7 base 260 k zlib x86_64 1.2.7-17.el7 base 90 k Transaction Summary ================================================================================ Install 25 Packages (+132 Dependent packages) Total download size: 117 M Installed size: 427 M Downloading packages: (2/41): bzip2-1.0.6-13.el7 0% [ ] 0.0 B/s | 0 B --:-- ETA warning: /var/lib/mock/583334-epel-7-x86_64/root/var/cache/yum/base/packages/binutils-2.25.1-22.base.el7.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID f4a80eb5: NOKEY Public key for binutils-2.25.1-22.base.el7.x86_64.rpm is not installed (1/41): binutils-2.25.1-22.base.el7.x86_64.rpm | 5.4 MB 00:00 (2/41): elfutils-0.166-2.el7.x86_64.rpm | 280 kB 00:00 (3/41): elfutils-libs-0.166-2.el7.x86_64.rpm | 262 kB 00:00 (4/41): cracklib-2.9.0-11.el7.x86_64.rpm | 80 kB 00:00 (6/41): cpp-4.8.5-11.el7.x 10% [=- ] 0.0 B/s | 6.1 MB --:-- ETA (5/41): bzip2-1.0.6-13.el7.x86_64.rpm | 52 kB 00:00 (6/41): file-5.11-33.el7.x86_64.rpm | 57 kB 00:00 warning: /var/lib/mock/583334-epel-7-x86_64/root/var/cache/yum/epel/packages/epel-release-7-10.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY Public key for epel-release-7-10.noarch.rpm is not installed (7/41): epel-release-7-10.noarch.rpm | 14 kB 00:00 (9/41): cracklib-dicts-2.9 11% [=- ] 573 kB/s | 6.5 MB 01:28 ETA (8/41): epel-rpm-macros-7-13.noarch.rpm | 12 kB 00:00 (9/41): gcc-4.8.5-11.el7.x86_64.rpm | 16 MB 00:00 (10/41): gdb-7.6.1-94.el7.x86_64.rpm | 2.4 MB 00:00 (11/41): gcc-c++-4.8.5-11.el7.x86_64.rpm | 7.2 MB 00:00 (13/41): cracklib-dicts-2. 58% [========= ] 5.8 MB/s | 33 MB 00:03 ETA (12/41): gzip-1.5-8.el7.x86_64.rpm | 129 kB 00:00 (15/41): glibc-devel-2.17- 60% [=========- ] 5.6 MB/s | 34 MB 00:03 ETA (15/41): glibc-devel-2.17- 67% [==========- ] 6.0 MB/s | 38 MB 00:03 ETA (13/41): cracklib-dicts-2.9.0-11.el7.x86_64.rpm | 3.6 MB 00:02 Public key for kernel-headers-3.10.0-514.26.2.el7.x86_64.rpm is not installed (14/41): kernel-headers-3.10.0-514.26.2.el7.x86_64.rpm | 4.8 MB 00:00 (15/41): glibc-devel-2.17-157.el7_3.5.x86_64.rpm | 1.1 MB 00:01 (16/41): glibc-headers-2.17-157.el7_3.5.x86_64.rpm | 669 kB 00:00 (17/41): libgomp-4.8.5-11.el7.x86_64.rpm | 152 kB 00:00 (18/41): libmount-2.23.2-33.el7_3.2.x86_64.rpm | 172 kB 00:00 (19/41): libpwquality-1.2.3-4.el7.x86_64.rpm | 84 kB 00:00 (20/41): libstdc++-devel-4.8.5-11.el7.x86_64.rpm | 1.5 MB 00:00 (23/41): libmpc-1.0.1-3.el 88% [============== ] 7.9 MB/s | 49 MB 00:00 ETA (21/41): cpp-4.8.5-11.el7.x86_64.rpm | 5.9 MB 00:02 (22/41): libuser-0.60-7.el7_1.x86_64.rpm | 398 kB 00:00 (23/41): libmpc-1.0.1-3.el7.x86_64.rpm | 51 kB 00:00 (24/41): libutempter-1.1.6-4.el7.x86_64.rpm | 25 kB 00:00 (25/41): libuuid-2.23.2-33.el7_3.2.x86_64.rpm | 76 kB 00:00 (26/41): mpfr-3.1.1-4.el7.x86_64.rpm | 203 kB 00:00 (27/41): pam-1.1.8-18.el7.x86_64.rpm | 717 kB 00:00 (28/41): patch-2.7.1-8.el7.x86_64.rpm | 110 kB 00:00 (29/41): python-rpm-macros-3-17.el7.noarch.rpm | 6.1 kB 00:00 (30/41): python2-rpm-macros-3-17.el7.noarch.rpm | 5.6 kB 00:00 (31/41): perl-Thread-Queue-3.02-2.el7.noarch.rpm | 17 kB 00:00 (32/41): rpm-build-4.11.3-21.el7.x86_64.rpm | 145 kB 00:00 (33/41): make-3.82-23.el7.x86_64.rpm | 420 kB 00:00 (34/41): python-srpm-macros-3-17.el7.noarch.rpm | 5.9 kB 00:00 (35/41): systemd-libs-219-30.el7_3.9.x86_64.rpm | 369 kB 00:00 (36/41): unzip-6.0-16.el7.x86_64.rpm | 169 kB 00:00 (37/41): tar-1.26-31.el7.x86_64.rpm | 843 kB 00:00 (38/41): which-2.20-7.el7.x86_64.rpm | 41 kB 00:00 (39/41): xz-5.2.2-1.el7.x86_64.rpm | 229 kB 00:00 (40/41): libblkid-2.23.2-3 96% [=============== ] 8.0 MB/s | 54 MB 00:00 ETA (40/41): libblkid-2.23.2-33.el7_3.2.x86_64.rpm | 170 kB 00:00 (41/41): util-linux-2.23.2 97% [===============-] 7.5 MB/s | 55 MB 00:00 ETA (41/41): util-linux-2.23.2-33.el7_3.2.x86_64.rpm | 1.9 MB 00:00 -------------------------------------------------------------------------------- Total 30 MB/s | 117 MB 00:03 Retrieving key from file:///usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Importing GPG key 0xF4A80EB5: Userid : "CentOS-7 Key (CentOS 7 Official Signing Key) " Fingerprint: 6341 ab27 53d7 8a78 a7c2 7bb1 24c6 a8a7 f4a8 0eb5 From : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Retrieving key from file:///usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Importing GPG key 0x352C64E5: Userid : "Fedora EPEL (7) " Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5 From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : libgcc-4.8.5-11.el7.x86_64 [ ] 1/157 Installing : libgcc-4.8.5-11.el7.x86_64 [######### ] 1/157 Installing : libgcc-4.8.5-11.el7.x86_64 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libpwquality-1.2.3-4.el7.x86_64 57/157 Verifying : libdb-utils-5.3.21-19.el7.x86_64 58/157 Verifying : bzip2-libs-1.0.6-13.el7.x86_64 59/157 Verifying : audit-libs-2.6.5-3.el7_3.1.x86_64 60/157 Verifying : glibc-common-2.17-157.el7_3.5.x86_64 61/157 Verifying : elfutils-0.166-2.el7.x86_64 62/157 Verifying : rpm-4.11.3-21.el7.x86_64 63/157 Verifying : python-libs-2.7.5-48.el7.x86_64 64/157 Verifying : 2:shadow-utils-4.1.5.1-24.el7.x86_64 65/157 Verifying : libmpc-1.0.1-3.el7.x86_64 66/157 Verifying : libselinux-2.5-6.el7.x86_64 67/157 Verifying : 4:perl-libs-5.16.3-291.el7.x86_64 68/157 Verifying : libcom_err-1.42.9-9.el7.x86_64 69/157 Verifying : perl-Pod-Usage-1.63-3.el7.noarch 70/157 Verifying : cpio-2.11-24.el7.x86_64 71/157 Verifying : glib2-2.46.2-4.el7.x86_64 72/157 Verifying : curl-7.29.0-35.el7.centos.x86_64 73/157 Verifying : glibc-devel-2.17-157.el7_3.5.x86_64 74/157 Verifying : centos-release-7-3.1611.el7.centos.x86_64 75/157 Verifying : perl-threads-1.87-4.el7.x86_64 76/157 Verifying : gdb-7.6.1-94.el7.x86_64 77/157 Verifying : cracklib-2.9.0-11.el7.x86_64 78/157 Verifying : libgpg-error-1.12-3.el7.x86_64 79/157 Verifying : glibc-headers-2.17-157.el7_3.5.x86_64 80/157 Verifying : libstdc++-devel-4.8.5-11.el7.x86_64 81/157 Verifying : filesystem-3.2-21.el7.x86_64 82/157 Verifying : nspr-4.13.1-1.0.el7_3.x86_64 83/157 Verifying : which-2.20-7.el7.x86_64 84/157 Verifying : file-5.11-33.el7.x86_64 85/157 Verifying : popt-1.13-16.el7.x86_64 86/157 Verifying : libssh2-1.4.3-10.el7_2.1.x86_64 87/157 Verifying : libsepol-2.5-6.el7.x86_64 88/157 Verifying : perl-threads-shared-1.43-6.el7.x86_64 89/157 Verifying : perl-Storable-2.45-3.el7.x86_64 90/157 Verifying : rpm-build-4.11.3-21.el7.x86_64 91/157 Verifying : coreutils-8.22-18.el7.x86_64 92/157 Verifying : cpp-4.8.5-11.el7.x86_64 93/157 Verifying : libidn-1.28-4.el7.x86_64 94/157 Verifying : gawk-4.0.2-4.el7_3.1.x86_64 95/157 Verifying : 1:perl-parent-0.225-244.el7.noarch 96/157 Verifying : perl-srpm-macros-1-8.el7.noarch 97/157 Verifying : p11-kit-trust-0.20.7-3.el7.x86_64 98/157 Verifying : pam-1.1.8-18.el7.x86_64 99/157 Verifying : gzip-1.5-8.el7.x86_64 100/157 Verifying : perl-Encode-2.51-7.el7.x86_64 101/157 Verifying : p11-kit-0.20.7-3.el7.x86_64 102/157 Verifying : perl-Carp-1.26-244.el7.noarch 103/157 Verifying : perl-podlators-2.5.1-3.el7.noarch 104/157 Verifying : gdbm-1.10-8.el7.x86_64 105/157 Verifying : libgcc-4.8.5-11.el7.x86_64 106/157 Verifying : xz-libs-5.2.2-1.el7.x86_64 107/157 Verifying : 1:findutils-4.5.11-5.el7.x86_64 108/157 Verifying : 4:perl-5.16.3-291.el7.x86_64 109/157 Verifying : mpfr-3.1.1-4.el7.x86_64 110/157 Verifying : perl-Filter-1.49-3.el7.x86_64 111/157 Verifying : libuuid-2.23.2-33.el7_3.2.x86_64 112/157 Verifying : systemd-libs-219-30.el7_3.9.x86_64 113/157 Verifying : expat-2.1.0-10.el7_3.x86_64 114/157 Verifying : gcc-c++-4.8.5-11.el7.x86_64 115/157 Verifying : perl-Exporter-5.68-3.el7.noarch 116/157 Verifying : perl-constant-1.27-2.el7.noarch 117/157 Verifying : perl-PathTools-3.40-5.el7.x86_64 118/157 Verifying : nss-softokn-3.16.2.3-14.4.el7.x86_64 119/157 Verifying : keyutils-libs-1.5.8-3.el7.x86_64 120/157 Verifying : pinentry-0.8.1-17.el7.x86_64 121/157 Verifying : 1:perl-Pod-Escapes-1.04-291.el7.noarch 122/157 Verifying : ncurses-base-5.9-13.20130511.el7.noarch 123/157 Verifying : chkconfig-1.7.2-1.el7_3.1.x86_64 124/157 Verifying : python2-rpm-macros-3-17.el7.noarch 125/157 Verifying : pth-2.0.7-23.el7.x86_64 126/157 Verifying : krb5-libs-1.14.1-27.el7_3.x86_64 127/157 Verifying : setup-2.8.71-7.el7.noarch 128/157 Verifying : libblkid-2.23.2-33.el7_3.2.x86_64 129/157 Verifying : perl-Thread-Queue-3.02-2.el7.noarch 130/157 Verifying : 1:perl-Pod-Simple-3.28-4.el7.noarch 131/157 Verifying : libattr-2.4.46-12.el7.x86_64 132/157 Verifying : perl-Time-Local-1.2300-2.el7.noarch 133/157 Verifying : zlib-1.2.7-17.el7.x86_64 134/157 Verifying : perl-Pod-Perldoc-3.20-4.el7.noarch 135/157 Verifying : nss-sysinit-3.28.4-1.2.el7_3.x86_64 136/157 Verifying : libxml2-2.9.1-6.el7_2.3.x86_64 137/157 Verifying : libsemanage-2.5-5.1.el7_3.x86_64 138/157 Verifying : openldap-2.4.40-13.el7.x86_64 139/157 Verifying : xz-5.2.2-1.el7.x86_64 140/157 Verifying : libcap-ng-0.7.5-4.el7.x86_64 141/157 Verifying : nss-softokn-freebl-3.16.2.3-14.4.el7.x86_64 142/157 Verifying : perl-Scalar-List-Utils-1.27-248.el7.x86_64 143/157 Verifying : epel-release-7-10.noarch 144/157 Verifying : libstdc++-4.8.5-11.el7.x86_64 145/157 Verifying : sed-4.2.2-5.el7.x86_64 146/157 Verifying : perl-Getopt-Long-2.40-2.el7.noarch 147/157 Verifying : libcap-2.22-8.el7.x86_64 148/157 Verifying : diffutils-3.3-4.el7.x86_64 149/157 Verifying : zip-3.0-11.el7.x86_64 150/157 Verifying : ncurses-5.9-13.20130511.el7.x86_64 151/157 Verifying : python-rpm-macros-3-17.el7.noarch 152/157 Verifying : rpm-libs-4.11.3-21.el7.x86_64 153/157 Verifying : libgomp-4.8.5-11.el7.x86_64 154/157 Verifying : ncurses-libs-5.9-13.20130511.el7.x86_64 155/157 Verifying : info-5.1-4.el7.x86_64 156/157 Verifying : elfutils-libelf-0.166-2.el7.x86_64 157/157 Installed: bash.x86_64 0:4.2.46-21.el7_3 bzip2.x86_64 0:1.0.6-13.el7 coreutils.x86_64 0:8.22-18.el7 cpio.x86_64 0:2.11-24.el7 diffutils.x86_64 0:3.3-4.el7 epel-release.noarch 0:7-10 epel-rpm-macros.noarch 0:7-13 findutils.x86_64 1:4.5.11-5.el7 gawk.x86_64 0:4.0.2-4.el7_3.1 gcc.x86_64 0:4.8.5-11.el7 gcc-c++.x86_64 0:4.8.5-11.el7 grep.x86_64 0:2.20-2.el7 gzip.x86_64 0:1.5-8.el7 info.x86_64 0:5.1-4.el7 make.x86_64 1:3.82-23.el7 patch.x86_64 0:2.7.1-8.el7 redhat-rpm-config.noarch 0:9.1.0-72.el7.centos rpm-build.x86_64 0:4.11.3-21.el7 sed.x86_64 0:4.2.2-5.el7 shadow-utils.x86_64 2:4.1.5.1-24.el7 tar.x86_64 2:1.26-31.el7 unzip.x86_64 0:6.0-16.el7 util-linux.x86_64 0:2.23.2-33.el7_3.2 which.x86_64 0:2.20-7.el7 xz.x86_64 0:5.2.2-1.el7 Dependency Installed: audit-libs.x86_64 0:2.6.5-3.el7_3.1 basesystem.noarch 0:10.0-7.el7.centos binutils.x86_64 0:2.25.1-22.base.el7 bzip2-libs.x86_64 0:1.0.6-13.el7 ca-certificates.noarch 0:2017.2.14-70.1.el7_3 centos-release.x86_64 0:7-3.1611.el7.centos chkconfig.x86_64 0:1.7.2-1.el7_3.1 cpp.x86_64 0:4.8.5-11.el7 cracklib.x86_64 0:2.9.0-11.el7 cracklib-dicts.x86_64 0:2.9.0-11.el7 curl.x86_64 0:7.29.0-35.el7.centos cyrus-sasl-lib.x86_64 0:2.1.26-20.el7_2 dwz.x86_64 0:0.11-3.el7 elfutils.x86_64 0:0.166-2.el7 elfutils-libelf.x86_64 0:0.166-2.el7 elfutils-libs.x86_64 0:0.166-2.el7 expat.x86_64 0:2.1.0-10.el7_3 file.x86_64 0:5.11-33.el7 file-libs.x86_64 0:5.11-33.el7 filesystem.x86_64 0:3.2-21.el7 gdb.x86_64 0:7.6.1-94.el7 gdbm.x86_64 0:1.10-8.el7 glib2.x86_64 0:2.46.2-4.el7 glibc.x86_64 0:2.17-157.el7_3.5 glibc-common.x86_64 0:2.17-157.el7_3.5 glibc-devel.x86_64 0:2.17-157.el7_3.5 glibc-headers.x86_64 0:2.17-157.el7_3.5 gmp.x86_64 1:6.0.0-12.el7_1 gnupg2.x86_64 0:2.0.22-4.el7 groff-base.x86_64 0:1.22.2-8.el7 kernel-headers.x86_64 0:3.10.0-514.26.2.el7 keyutils-libs.x86_64 0:1.5.8-3.el7 krb5-libs.x86_64 0:1.14.1-27.el7_3 libacl.x86_64 0:2.2.51-12.el7 libassuan.x86_64 0:2.1.0-3.el7 libattr.x86_64 0:2.4.46-12.el7 libblkid.x86_64 0:2.23.2-33.el7_3.2 libcap.x86_64 0:2.22-8.el7 libcap-ng.x86_64 0:0.7.5-4.el7 libcom_err.x86_64 0:1.42.9-9.el7 libcurl.x86_64 0:7.29.0-35.el7.centos libdb.x86_64 0:5.3.21-19.el7 libdb-utils.x86_64 0:5.3.21-19.el7 libffi.x86_64 0:3.0.13-18.el7 libgcc.x86_64 0:4.8.5-11.el7 libgcrypt.x86_64 0:1.5.3-13.el7_3.1 libgomp.x86_64 0:4.8.5-11.el7 libgpg-error.x86_64 0:1.12-3.el7 libidn.x86_64 0:1.28-4.el7 libmount.x86_64 0:2.23.2-33.el7_3.2 libmpc.x86_64 0:1.0.1-3.el7 libpwquality.x86_64 0:1.2.3-4.el7 libselinux.x86_64 0:2.5-6.el7 libsemanage.x86_64 0:2.5-5.1.el7_3 libsepol.x86_64 0:2.5-6.el7 libssh2.x86_64 0:1.4.3-10.el7_2.1 libstdc++.x86_64 0:4.8.5-11.el7 libstdc++-devel.x86_64 0:4.8.5-11.el7 libtasn1.x86_64 0:3.8-3.el7 libuser.x86_64 0:0.60-7.el7_1 libutempter.x86_64 0:1.1.6-4.el7 libuuid.x86_64 0:2.23.2-33.el7_3.2 libverto.x86_64 0:0.2.5-4.el7 libxml2.x86_64 0:2.9.1-6.el7_2.3 lua.x86_64 0:5.1.4-15.el7 mpfr.x86_64 0:3.1.1-4.el7 ncurses.x86_64 0:5.9-13.20130511.el7 ncurses-base.noarch 0:5.9-13.20130511.el7 ncurses-libs.x86_64 0:5.9-13.20130511.el7 nspr.x86_64 0:4.13.1-1.0.el7_3 nss.x86_64 0:3.28.4-1.2.el7_3 nss-softokn.x86_64 0:3.16.2.3-14.4.el7 nss-softokn-freebl.x86_64 0:3.16.2.3-14.4.el7 nss-sysinit.x86_64 0:3.28.4-1.2.el7_3 nss-tools.x86_64 0:3.28.4-1.2.el7_3 nss-util.x86_64 0:3.28.4-1.0.el7_3 openldap.x86_64 0:2.4.40-13.el7 openssl-libs.x86_64 1:1.0.1e-60.el7_3.1 p11-kit.x86_64 0:0.20.7-3.el7 p11-kit-trust.x86_64 0:0.20.7-3.el7 pam.x86_64 0:1.1.8-18.el7 pcre.x86_64 0:8.32-15.el7_2.1 perl.x86_64 4:5.16.3-291.el7 perl-Carp.noarch 0:1.26-244.el7 perl-Encode.x86_64 0:2.51-7.el7 perl-Exporter.noarch 0:5.68-3.el7 perl-File-Path.noarch 0:2.09-2.el7 perl-File-Temp.noarch 0:0.23.01-3.el7 perl-Filter.x86_64 0:1.49-3.el7 perl-Getopt-Long.noarch 0:2.40-2.el7 perl-HTTP-Tiny.noarch 0:0.033-3.el7 perl-PathTools.x86_64 0:3.40-5.el7 perl-Pod-Escapes.noarch 1:1.04-291.el7 perl-Pod-Perldoc.noarch 0:3.20-4.el7 perl-Pod-Simple.noarch 1:3.28-4.el7 perl-Pod-Usage.noarch 0:1.63-3.el7 perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 perl-Socket.x86_64 0:2.010-4.el7 perl-Storable.x86_64 0:2.45-3.el7 perl-Text-ParseWords.noarch 0:3.29-4.el7 perl-Thread-Queue.noarch 0:3.02-2.el7 perl-Time-HiRes.x86_64 4:1.9725-3.el7 perl-Time-Local.noarch 0:1.2300-2.el7 perl-constant.noarch 0:1.27-2.el7 perl-libs.x86_64 4:5.16.3-291.el7 perl-macros.x86_64 4:5.16.3-291.el7 perl-parent.noarch 1:0.225-244.el7 perl-podlators.noarch 0:2.5.1-3.el7 perl-srpm-macros.noarch 0:1-8.el7 perl-threads.x86_64 0:1.87-4.el7 perl-threads-shared.x86_64 0:1.43-6.el7 pinentry.x86_64 0:0.8.1-17.el7 pkgconfig.x86_64 1:0.27.1-4.el7 popt.x86_64 0:1.13-16.el7 pth.x86_64 0:2.0.7-23.el7 python-libs.x86_64 0:2.7.5-48.el7 python-rpm-macros.noarch 0:3-17.el7 python-srpm-macros.noarch 0:3-17.el7 python2-rpm-macros.noarch 0:3-17.el7 readline.x86_64 0:6.2-9.el7 rpm.x86_64 0:4.11.3-21.el7 rpm-build-libs.x86_64 0:4.11.3-21.el7 rpm-libs.x86_64 0:4.11.3-21.el7 setup.noarch 0:2.8.71-7.el7 shared-mime-info.x86_64 0:1.1-9.el7 sqlite.x86_64 0:3.7.17-8.el7 systemd-libs.x86_64 0:219-30.el7_3.9 tzdata.noarch 0:2017b-1.el7 ustr.x86_64 0:1.0.4-16.el7 xz-libs.x86_64 0:5.2.2-1.el7 zip.x86_64 0:3.0-11.el7 zlib.x86_64 0:1.2.7-17.el7 Complete! Failed to set locale, defaulting to C copr_base | 3.9 kB 00:00 copr_denisarnaud_boost157 | 3.0 kB 00:00 copr_loveshack_dts6 | 3.0 kB 00:00 https://copr-be.cloud.fedoraproject.org/results/mlampe/devtoolset-4.1/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. To address this issue please refer to the below knowledge base article https://access.redhat.com/articles/1320623 If above article doesn't help to resolve this issue please create a bug on https://bugs.centos.org/ copr_praiskup_autotools | 3.0 kB 00:00 Resolving Dependencies --> Running transaction check ---> Package scl-utils-build.x86_64 0:20130529-17.el7_1 will be installed --> Processing Dependency: iso-codes for package: scl-utils-build-20130529-17.el7_1.x86_64 --> Running transaction check ---> Package iso-codes.noarch 0:3.46-2.el7 will be installed --> Processing Dependency: xml-common for package: iso-codes-3.46-2.el7.noarch --> Running transaction check ---> Package xml-common.noarch 0:0.6.3-39.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: scl-utils-build x86_64 20130529-17.el7_1 base 17 k Installing for dependencies: iso-codes noarch 3.46-2.el7 base 2.7 M xml-common noarch 0.6.3-39.el7 base 26 k Transaction Summary ================================================================================ Install 1 Package (+2 Dependent packages) Total download size: 2.7 M Installed size: 14 M Downloading packages: -------------------------------------------------------------------------------- Total 155 MB/s | 2.7 MB 00:00 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : xml-common-0.6.3-39.el7.noar [ ] 1/3 Installing : xml-common-0.6.3-39.el7.noar [# ] 1/3 Installing : xml-common-0.6.3-39.el7.noar [###################### ] 1/3 Installing : xml-common-0.6.3-39.el7.noar [####################### ] 1/3 Installing : xml-common-0.6.3-39.el7.noar [############################ ] 1/3 Installing : xml-common-0.6.3-39.el7.noarch 1/3 Installing : iso-codes-3.46-2.el7.noarch [ ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [# ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [#### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [##### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [###### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [####### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [######## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [######### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [########## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [########### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############ ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############# ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [################ ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [################# ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [################## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [#################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [##################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [###################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [####################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [######################## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [######################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [########################## ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [########################### ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############################ ] 2/3 Installing : iso-codes-3.46-2.el7.noarch [############################# ] 2/3 Installing : iso-codes-3.46-2.el7.noarch 2/3 Installing : scl-utils-build-20130529-17. [ ] 3/3 Installing : scl-utils-build-20130529-17. [################### ] 3/3 Installing : scl-utils-build-20130529-17. [###################### ] 3/3 Installing : scl-utils-build-20130529-17. [########################### ] 3/3 Installing : scl-utils-build-20130529-17. [############################ ] 3/3 Installing : scl-utils-build-20130529-17.el7_1.x86_64 3/3 Verifying : scl-utils-build-20130529-17.el7_1.x86_64 1/3 Verifying : xml-common-0.6.3-39.el7.noarch 2/3 Verifying : iso-codes-3.46-2.el7.noarch 3/3 Installed: scl-utils-build.x86_64 0:20130529-17.el7_1 Dependency Installed: iso-codes.noarch 0:3.46-2.el7 xml-common.noarch 0:0.6.3-39.el7 Complete! Finish: yum install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs warning: Could not canonicalize hostname: 84b78443deca4508b0f85abf8a791342 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/hisat2-2.1.0-1.el7.centos.src.rpm Finish: rpmbuild -bs Finish: buildsrpm INFO: Done(hisat2.spec) Config(child) 1 minutes 34 seconds INFO: Results and/or logs in: intermediate-srpm Finish: run INFO: unmounting tmpfs. INFO: unmounting tmpfs. WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.2 starting (python version = 3.6.1)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(intermediate-srpm/hisat2-2.1.0-1.el7.centos.src.rpm) Config(583334-epel-7-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/583334-epel-7-x86_64-bootstrap/root. INFO: calling preinit hooks INFO: enabled root cache Start(bootstrap): unpacking root cache Finish(bootstrap): unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/583334-epel-7-x86_64/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.2 INFO: Mock Version: 1.4.2 Finish: chroot init Start: build phase for hisat2-2.1.0-1.el7.centos.src.rpm Start: build setup for hisat2-2.1.0-1.el7.centos.src.rpm warning: Could not canonicalize hostname: 5dae918ca1b74cd5a3e90fa707d57694 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/hisat2-2.1.0-1.el7.centos.src.rpm Failed to set locale, defaulting to C copr_base | 3.9 kB 00:00 copr_denisarnaud_boost157 | 3.0 kB 00:00 copr_loveshack_dts6 | 3.0 kB 00:00 https://copr-be.cloud.fedoraproject.org/results/mlampe/devtoolset-4.1/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. To address this issue please refer to the below knowledge base article https://access.redhat.com/articles/1320623 If above article doesn't help to resolve this issue please create a bug on https://bugs.centos.org/ copr_praiskup_autotools | 3.0 kB 00:00 base | 3.6 kB 00:00 epel | 4.3 kB 00:00 extras | 3.4 kB 00:00 updates | 3.4 kB 00:00 (1/8): copr_denisarnaud_boost157/primary_db | 23 kB 00:00 (3/8): copr_loveshack_dts6 0% [ ] 0.0 B/s | 23 kB --:-- ETA (2/8): copr_base/primary_db | 213 kB 00:00 (3/8): copr_praiskup_autotools/primary_db | 17 kB 00:00 (4/8): copr_loveshack_dts6/primary_db | 23 kB 00:00 (5/8): base/primary_db | 5.6 MB 00:00 (6/8): epel/primary_db | 4.8 MB 00:00 (8/8): updates/primary_db 57% [========= ] 12 MB/s | 11 MB 00:00 ETA (7/8): extras/primary_db | 191 kB 00:00 (8/8): updates/primary_db 62% [=========- ] 11 MB/s | 12 MB 00:00 ETA (8/8): updates/primary_db 65% [========== ] 10 MB/s | 12 MB 00:00 ETA (8/8): updates/primary_db 68% [=========== ] 9.9 MB/s | 13 MB 00:00 ETA (8/8): updates/primary_db 73% [===========- ] 9.4 MB/s | 14 MB 00:00 ETA (8/8): updates/primary_db 78% [============- ] 9.0 MB/s | 15 MB 00:00 ETA (8/8): updates/primary_db 83% [============= ] 8.6 MB/s | 16 MB 00:00 ETA (8/8): updates/primary_db 88% [============== ] 8.2 MB/s | 17 MB 00:00 ETA (8/8): updates/primary_db 93% [=============== ] 7.9 MB/s | 17 MB 00:00 ETA (8/8): updates/primary_db 99% [===============-] 7.6 MB/s | 18 MB 00:00 ETA (8/8): updates/primary_db | 7.8 MB 00:03 Getting requirements for hisat2-2.1.0-1.el7.centos.src --> Already installed : gcc-c++-4.8.5-11.el7.x86_64 --> zlib-devel-1.2.7-17.el7.x86_64 --> Running transaction check ---> Package zlib-devel.x86_64 0:1.2.7-17.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: zlib-devel x86_64 1.2.7-17.el7 base 50 k Transaction Summary ================================================================================ Install 1 Package Total download size: 50 k Installed size: 132 k Downloading packages: zlib-devel-1.2.7-17.el7.x86_64.rpm | 50 kB 00:00 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : zlib-devel-1.2.7-17.el7.x86_ [ ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [### ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [################# ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [##################### ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [###################### ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [######################## ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_ [############################ ] 1/1 Installing : zlib-devel-1.2.7-17.el7.x86_64 1/1 Verifying : zlib-devel-1.2.7-17.el7.x86_64 1/1 Installed: zlib-devel.x86_64 0:1.2.7-17.el7 Complete! Finish: build setup for hisat2-2.1.0-1.el7.centos.src.rpm Start: rpmbuild hisat2-2.1.0-1.el7.centos.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SF8ZSn + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf hisat2-2.1.0 + /usr/bin/unzip -qq /builddir/build/SOURCES/hisat2-2.1.0-source.zip + STATUS=0 + '[' 0 -ne 0 ']' + cd hisat2-2.1.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.qmqCo1 + umask 022 + cd /builddir/build/BUILD + cd hisat2-2.1.0 + make -j2 BITS=64 SSE_FLAG= /usr/bin/g++ -O3 -m64 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall -DMASSIVE_DATA_RLCSA \ -I third_party \ -o hisat2-build-s hisat2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp hisat2_build_main.cpp \ -lpthread /bin/sh: hostname: command not found /usr/bin/g++ -O3 -m64 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I third_party \ -o hisat2-build-l hisat2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp hisat2_build_main.cpp \ -lpthread /bin/sh: hostname: command not found In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from hisat2_build.cpp:35: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ reference.cpp: In member function 'int BitPairReference::getStretch(uint32_t*, size_t, size_t, size_t) const': reference.cpp:456:12: warning: variable 'origBufOff' set but not used [-Wunused-but-set-variable] uint64_t origBufOff = bufOff; ^ reference.cpp:450:7: warning: variable 'binarySearched' set but not used [-Wunused-but-set-variable] bool binarySearched = false; ^ reference.cpp: In member function 'int BitPairReference::getStretch(uint32_t*, size_t, size_t, size_t) const': reference.cpp:456:12: warning: variable 'origBufOff' set but not used [-Wunused-but-set-variable] uint64_t origBufOff = bufOff; ^ reference.cpp:450:7: warning: variable 'binarySearched' set but not used [-Wunused-but-set-variable] bool binarySearched = false; ^ /usr/bin/g++ -O3 -m64 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I third_party \ -o hisat2-align-s hisat2.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp splice_site.cpp hisat2_main.cpp \ -lpthread /bin/sh: hostname: command not found /usr/bin/g++ -O3 -m64 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I third_party \ -o hisat2-align-l hisat2.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp splice_site.cpp hisat2_main.cpp \ -lpthread /bin/sh: hostname: command not found In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2.cpp:33: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from hgfm.h:24:0, from hisat2.cpp:33: gfm.h: In instantiation of 'void GFM::checkOrigs(const EList >&, bool) const [with index_t = unsigned int]': hisat2.cpp:3686:27: required from 'void driver(const char*, const string&, const string&) [with TStr = SString; std::string = std::basic_string]' hisat2.cpp:4115:51: required from here gfm.h:6451:13: warning: variable 'lastorig' set but not used [-Wunused-but-set-variable] int lastorig = -1; ^ In file included from hgfm.h:24:0, from hisat2.cpp:33: gfm.h: In instantiation of 'void GFM::checkOrigs(const EList >&, bool) const [with index_t = long unsigned int]': hisat2.cpp:3686:27: required from 'void driver(const char*, const string&, const string&) [with TStr = SString; std::string = std::basic_string]' hisat2.cpp:4115:51: required from here gfm.h:6451:13: warning: variable 'lastorig' set but not used [-Wunused-but-set-variable] int lastorig = -1; ^ In file included from hisat2.cpp:45:0: spliced_aligner.h: In instantiation of 'int64_t SplicedAligner::hybridSearch_recur(const Scoring&, const PairedEndPolicy&, const TranscriptomePolicy&, const GraphPolicy&, const GFM&, const ALTDB&, const BitPairReference&, SwAligner&, SpliceSiteDB&, index_t, const GenomeHit&, index_t, index_t, WalkMetrics&, PerReadMetrics&, SwMetrics&, HIMetrics&, RandomSource&, AlnSinkWrap&, index_t) [with index_t = unsigned int; local_index_t = short unsigned int; int64_t = long int]': hisat2.cpp:4134:1: required from here spliced_aligner.h:282:18: warning: variable 'another_spliced' set but not used [-Wunused-but-set-variable] bool another_spliced = false; ^ In file included from hisat2.cpp:45:0: spliced_aligner.h: In instantiation of 'int64_t SplicedAligner::hybridSearch_recur(const Scoring&, const PairedEndPolicy&, const TranscriptomePolicy&, const GraphPolicy&, const GFM&, const ALTDB&, const BitPairReference&, SwAligner&, SpliceSiteDB&, index_t, const GenomeHit&, index_t, index_t, WalkMetrics&, PerReadMetrics&, SwMetrics&, HIMetrics&, RandomSource&, AlnSinkWrap&, index_t) [with index_t = long unsigned int; local_index_t = short unsigned int; int64_t = long int]': hisat2.cpp:4134:1: required from here spliced_aligner.h:282:18: warning: variable 'another_spliced' set but not used [-Wunused-but-set-variable] bool another_spliced = false; ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ reference.cpp: In member function 'int BitPairReference::getStretch(uint32_t*, size_t, size_t, size_t) const': reference.cpp:456:12: warning: variable 'origBufOff' set but not used [-Wunused-but-set-variable] uint64_t origBufOff = bufOff; ^ reference.cpp:450:7: warning: variable 'binarySearched' set but not used [-Wunused-but-set-variable] bool binarySearched = false; ^ reference.cpp: In member function 'int BitPairReference::getStretch(uint32_t*, size_t, size_t, size_t) const': reference.cpp:456:12: warning: variable 'origBufOff' set but not used [-Wunused-but-set-variable] uint64_t origBufOff = bufOff; ^ reference.cpp:450:7: warning: variable 'binarySearched' set but not used [-Wunused-but-set-variable] bool binarySearched = false; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_seed.h:30, from aligner_seed.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_seed2.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_sw.cpp:25: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_result.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from aln_sink.h:25, from aln_sink.cpp:22: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from unique.h:38, from unique.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_bt.h:25, from aligner_bt.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ aligner_bt.cpp: In member function 'void BtBranchTracer::triangleFill(int64_t, int64_t, int, TAlScore, TAlScore, RandomSource&, int64_t&, int64_t&, int&, TAlScore&, bool&, bool&)': aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:337:8: note: 'e.Edit::donor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:337:8: note: 'e.Edit::acceptor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp: In member function 'void BtBranchTracer::triangleFill(int64_t, int64_t, int, TAlScore, TAlScore, RandomSource&, int64_t&, int64_t&, int&, TAlScore&, bool&, bool&)': aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:337:8: note: 'e.Edit::donor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:337:8: note: 'e.Edit::acceptor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:424:10: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:454:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:484:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp: In member function 'void BtBranchTracer::squareFill(int64_t, int64_t, int, TAlScore, TAlScore, RandomSource&, int64_t&, int64_t&, int&, TAlScore&, bool&, bool&)': aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:883:8: note: 'e.Edit::donor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:883:8: note: 'e.Edit::acceptor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp: In member function 'void BtBranchTracer::squareFill(int64_t, int64_t, int, TAlScore, TAlScore, RandomSource&, int64_t&, int64_t&, int&, TAlScore&, bool&, bool&)': aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:883:8: note: 'e.Edit::donor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:883:8: note: 'e.Edit::acceptor_seq' was declared here Edit e; ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:967:10: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, mask2dna[rc], "ACGTN"[qc], EDIT_TYPE_MM); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:999:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc+1, mask2dna[rc], '-', EDIT_TYPE_READ_GAP); ^ aligner_bt.cpp:1154:8: warning: '*((void*)& e +17)' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: '*((void*)& e +17)' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::donor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: 'e.Edit::donor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ aligner_bt.cpp:1154:8: warning: 'e.Edit::acceptor_seq' may be used uninitialized in this function [-Wmaybe-uninitialized] e_ = e; ^ aligner_bt.cpp:1031:9: note: 'e.Edit::acceptor_seq' was declared here Edit e((int)rowc, '-', "ACGTN"[qc], EDIT_TYPE_REF_GAP); ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_swsse.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_i16.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_i16.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_loc_u8.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_sw_common.h:23, from aligner_sw.h:74, from aligner_swsse_ee_u8.cpp:56: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from aligner_result.h:30, from aligner_seed2.h:102, from aligner_driver.h:78, from aligner_driver.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:749:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1072:30: warning: name lookup of 's' changed [enabled by default] int nt = s[j]; ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from splice_site.cpp:20: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ /usr/bin/g++ -O3 -m64 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DHISAT2_INSPECT_MAIN -Wall \ -I third_party -I . \ -o hisat2-inspect-s hisat2_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread /bin/sh: hostname: command not found /usr/bin/g++ -O3 -m64 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -m64 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \ -fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DHISAT2_INSPECT_MAIN -Wall \ -I third_party -I . \ -o hisat2-inspect-l hisat2_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread /bin/sh: hostname: command not found In file included from hisat2_inspect.cpp:25:0: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2_inspect.cpp:27: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from hisat2_inspect.cpp:25:0: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2_inspect.cpp:27: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from hisat2_inspect.cpp:25:0: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2_inspect.cpp:27: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from hisat2_inspect.cpp:25:0: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from hgfm.h:24, from hisat2_inspect.cpp:27: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ ref_read.cpp: In function 'std::pair fastaRefReadSizes(EList&, EList&, const RefReadInParams&, BitpairOutFileBuf*, TIndexOff&)': ref_read.cpp:327:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i + 1 >= recs.size() || recs[i+1].first) { ^ In file included from edit.h:26:0, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from edit.h:26:0, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from edit.h:26:0, from edit.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from edit.h:26:0, from edit.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from splice_site.h:34, from edit.h:30, from edit.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from alphabet.h:27:0, from gfm.h:40, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from alphabet.h:27:0, from gfm.h:40, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from alphabet.h:27:0, from gfm.h:40, from gfm.cpp:21: gbwt_graph.h: In constructor 'RefGraph::RefGraph(const SString&, const EList&, const EList >&, const EList >&, const string&, int, bool)': gbwt_graph.h:684:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:363:1: warning: matches this 's' under ISO standard rules [enabled by default] RefGraph::RefGraph(const SString& s, ^ gbwt_graph.h:639:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ In file included from alphabet.h:27:0, from gfm.h:40, from gfm.cpp:21: gbwt_graph.h: In static member function 'static void RefGraph::buildGraph_worker(void*)': gbwt_graph.h:1000:40: warning: name lookup of 's' changed [enabled by default] assert_lt(alt.pos, s.length()); ^ assert_helpers.h:196:11: note: in definition of macro 'assert_lt' if(!(a < b)) { \ ^ In file included from gfm.h:64:0, from gfm.cpp:21: gbwt_graph.h:870:26: warning: matches this 's' under ISO standard rules [enabled by default] const SString& s = *(threadParam->s); ^ gbwt_graph.h:955:25: warning: matches this 's' under old rules [enabled by default] for(index_t s = 0; s < snpIDs.size(); s++) { ^ + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.WKFb2q + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 + cd hisat2-2.1.0 + mkdir -p /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin + install -m755 hisat2-align-l hisat2-align-s hisat2-build-s hisat2-inspect-s hisat2-inspect-l /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/hisat2-2.1.0 extracting debug info from /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin/hisat2-inspect-l extracting debug info from /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin/hisat2-inspect-s extracting debug info from /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin/hisat2-build-s extracting debug info from /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin/hisat2-align-s extracting debug info from /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/bin/hisat2-align-l /usr/lib/rpm/sepdebugcrcfix: Updated 5 CRC32s, 0 CRC32s did match. 6442 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: hisat2-2.1.0-1.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GvTqN2 + umask 022 + cd /builddir/build/BUILD + cd hisat2-2.1.0 + DOCDIR=/builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + cp -pr AUTHORS /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + cp -pr MANUAL /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + cp -pr NEWS /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + cp -pr scripts /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-2.1.0 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4IsnAE + umask 022 + cd /builddir/build/BUILD + cd hisat2-2.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/licenses/hisat2-2.1.0 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/licenses/hisat2-2.1.0 + cp -pr LICENSE /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/licenses/hisat2-2.1.0 + exit 0 Provides: hisat2 = 2.1.0-1.el7.centos hisat2(x86-64) = 2.1.0-1.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(FindBin) perl(Getopt::Long) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: hisat2-example-2.1.0-1.el7.centos.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ylmGmh + umask 022 + cd /builddir/build/BUILD + cd hisat2-2.1.0 + DOCDIR=/builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-example-2.1.0 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-example-2.1.0 + cp -pr example /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64/usr/share/doc/hisat2-example-2.1.0 + exit 0 Provides: hisat2-example = 2.1.0-1.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: hisat2-debuginfo-2.1.0-1.el7.centos.x86_64 Provides: hisat2-debuginfo = 2.1.0-1.el7.centos hisat2-debuginfo(x86-64) = 2.1.0-1.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 warning: Could not canonicalize hostname: 940d58bf5f874018ae20f7b321696e94 Wrote: /builddir/build/RPMS/hisat2-2.1.0-1.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/hisat2-example-2.1.0-1.el7.centos.noarch.rpm Wrote: /builddir/build/RPMS/hisat2-debuginfo-2.1.0-1.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.6F8wwd + umask 022 + cd /builddir/build/BUILD + cd hisat2-2.1.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/hisat2-2.1.0-1.el7.centos.x86_64 + exit 0 Finish: rpmbuild hisat2-2.1.0-1.el7.centos.src.rpm Finish: build phase for hisat2-2.1.0-1.el7.centos.src.rpm INFO: Done(intermediate-srpm/hisat2-2.1.0-1.el7.centos.src.rpm) Config(child) 2 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. INFO: unmounting tmpfs. Finish: clean chroot Finish: run