Mock Version: 1.4.4 Mock Version: 1.4.4 Mock Version: 1.4.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True) ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False warning: Could not canonicalize hostname: copr-builder-249271573.novalocal warning: Could not canonicalize hostname: copr-builder-249271573.novalocal Building target platforms: x86_64 Building target platforms: x86_64 Building for target x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/bedops-2.4.26-1.el7.centos.src.rpm Wrote: /builddir/build/SRPMS/bedops-2.4.26-1.el7.centos.src.rpm Child return code was: 0 Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True) ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], chrootPath='/var/lib/mock/657603-epel-7-x86_64-1509717951/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]printOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building target platforms: x86_64 Building for target x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1i1Uxq Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1i1Uxq + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bedops-2.4.26 + rm -rf bedops-2.4.26 + /usr/bin/gzip -dc /builddir/build/SOURCES/bedops-2.4.26.tar.gz + /usr/bin/gzip -dc /builddir/build/SOURCES/bedops-2.4.26.tar.gz + /usr/bin/tar -xf - + /usr/bin/tar -xf - + STATUS=0 + STATUS=0 + '[' 0 -ne 0 ']' + '[' 0 -ne 0 ']' + cd bedops-2.4.26 + cd bedops-2.4.26 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #2 (bedops-syslibs.patch): Patch #2 (bedops-syslibs.patch): + echo 'Patch #2 (bedops-syslibs.patch):' + echo 'Patch #2 (bedops-syslibs.patch):' + /usr/bin/cat /builddir/build/SOURCES/bedops-syslibs.patch + /usr/bin/cat /builddir/build/SOURCES/bedops-syslibs.patch + /usr/bin/patch -p1 --fuzz=0 + /usr/bin/patch -p1 --fuzz=0 patching file applications/bed/bedops/src/Makefile patching file applications/bed/bedops/src/Makefile patching file interfaces/src/data/starch/starchFileHelpers.c patching file interfaces/src/data/starch/starchFileHelpers.c patching file applications/bed/bedextract/src/Makefile patching file applications/bed/bedextract/src/Makefile patching file applications/bed/bedmap/src/Makefile patching file applications/bed/bedmap/src/Makefile patching file system.mk/Makefile.linux patching file system.mk/Makefile.linux patching file applications/bed/closestfeats/src/Makefile patching file applications/bed/closestfeats/src/Makefile patching file applications/bed/conversion/src/Makefile patching file applications/bed/conversion/src/Makefile patching file applications/bed/sort-bed/src/Makefile patching file applications/bed/sort-bed/src/Makefile patching file applications/bed/starch/src/Makefile patching file applications/bed/starch/src/Makefile patching file applications/bed/starch/src/starchcat.c patching file applications/bed/starch/src/starchcat.c patching file docs/conf.py patching file docs/conf.py + rm -r third-party/bzip2-1.0.6.tar.bz2 third-party/jansson-2.6.tar.bz2 + rm -r third-party/bzip2-1.0.6.tar.bz2 third-party/jansson-2.6.tar.bz2 + exit 0 + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YBC5YF Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YBC5YF + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd bedops-2.4.26 + cd bedops-2.4.26 + make JPARALLEL= + make JPARALLEL= make -f system.mk/Makefile.linux make -f system.mk/Makefile.linux make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.26' make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.26' #bzcat | tar -x -C third-party #bzcat | tar -x -C third-party #cd third-party/jansson-2.6 && ./configure --prefix=/builddir/build/BUILD/bedops-2.4.26/third-party/jansson-2.6 && make && make install && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f jansson && ln -sf jansson-2.6 third-party/jansson #cd third-party/jansson-2.6 && ./configure --prefix=/builddir/build/BUILD/bedops-2.4.26/third-party/jansson-2.6 && make && make install && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f jansson && ln -sf jansson-2.6 third-party/jansson #bzcat | tar -x -C third-party #bzcat | tar -x -C third-party #cd third-party/bzip2-1.0.6 && make libbz2.a && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2 #cd third-party/bzip2-1.0.6 && make libbz2.a && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2 #bzcat | tar -x -C third-party #bzcat | tar -x -C third-party #cd third-party/zlib-1.2.7 && ./configure --static && make && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib #cd third-party/zlib-1.2.7 && ./configure --static && make && cd /builddir/build/BUILD/bedops-2.4.26 && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib make build -f /builddir/build/BUILD/bedops-2.4.26/system.mk/Makefile.linux make build -f /builddir/build/BUILD/bedops-2.4.26/system.mk/Makefile.linux make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.26' make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.26' make -C applications/bed/bedmap/src -f Makefile build make -C applications/bed/bedmap/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/bedmap -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp mkdir -p ../bin && g++ -o ../bin/bedmap -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedmap/src' make -C applications/bed/sort-bed/src -f Makefile build make -C applications/bed/sort-bed/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src' mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects/SortDetails.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects/SortDetails.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects/Sort.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects/Sort.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects/CheckSort.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects/CheckSort.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/sort-bed -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -iquote../../../../interfaces/general-headers objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o objects/SortDetails.o objects/Sort.o objects/CheckSort.o -ljansson -lz -lbz2 mkdir -p ../bin && g++ -o ../bin/sort-bed -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -iquote../../../../interfaces/general-headers objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o objects/SortDetails.o objects/Sort.o objects/CheckSort.o -ljansson -lz -lbz2 mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/sort-bed/src' make -C applications/bed/bedops/src -f Makefile build make -C applications/bed/bedops/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/bedops -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp mkdir -p ../bin && g++ -o ../bin/bedops -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedops/src' make -C applications/bed/closestfeats/src -f Makefile build make -C applications/bed/closestfeats/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/closest-features -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp mkdir -p ../bin && g++ -o ../bin/closest-features -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/closestfeats/src' make -C applications/bed/bedextract/src -f Makefile build make -C applications/bed/bedextract/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/bedextract -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp mkdir -p ../bin && g++ -o ../bin/bedextract -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/bedextract/src' make -C applications/bed/starch/src -f Makefile build make -C applications/bed/starch/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src' mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p ../lib mkdir -p ../lib ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o mkdir -p ../bin mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starch.o -o ../bin/starch ../lib/libstarch.a -ljansson -lz -lbz2 g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starch.o -o ../bin/starch ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/unstarch.o -o ../bin/unstarch ../lib/libstarch.a -ljansson -lz -lbz2 g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/unstarch.o -o ../bin/unstarch ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchcat.o -o ../bin/starchcat ../lib/libstarch.a -ljansson -lz -lbz2 g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchcat.o -o ../bin/starchcat ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin mkdir -p ../bin cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel mkdir -p ../bin mkdir -p ../bin cp starchcluster_sge.tcsh ../bin/starchcluster_sge cp starchcluster_sge.tcsh ../bin/starchcluster_sge mkdir -p ../bin mkdir -p ../bin cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm mkdir -p ../bin mkdir -p ../bin cp starch-diff.py ../bin/starch-diff cp starch-diff.py ../bin/starch-diff mkdir -p ../bin mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../.. g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchstrip.o -o ../bin/starchstrip ../lib/libstarch.a -ljansson -lz -lbz2 g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchstrip.o -o ../bin/starchstrip ../lib/libstarch.a -ljansson -lz -lbz2 make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/starch/src' make -C applications/bed/conversion/src -f Makefile build make -C applications/bed/conversion/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src' mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3 -iquote"/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src" convert2bed.c -o ../bin/convert2bed -lpthread mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3 -iquote"/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src" convert2bed.c -o ../bin/convert2bed -lpthread make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26/applications/bed/conversion/src' make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26' make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26' make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26' make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.26' + exit 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VHDA1B Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VHDA1B + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 '!=' / ']' + '[' /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + mkdir /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + cd bedops-2.4.26 + cd bedops-2.4.26 + make install BINDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin + make install BINDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin cp applications/bed/conversion/src/wrappers/bam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed cp applications/bed/conversion/src/wrappers/bam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed cp applications/bed/conversion/src/wrappers/gff2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2bed cp applications/bed/conversion/src/wrappers/gff2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2bed cp applications/bed/conversion/src/wrappers/gtf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2bed cp applications/bed/conversion/src/wrappers/gtf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2bed cp applications/bed/conversion/src/wrappers/gvf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2bed cp applications/bed/conversion/src/wrappers/gvf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2bed cp applications/bed/conversion/src/wrappers/psl2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2bed cp applications/bed/conversion/src/wrappers/psl2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2bed cp applications/bed/conversion/src/wrappers/rmsk2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2bed cp applications/bed/conversion/src/wrappers/rmsk2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2bed cp applications/bed/conversion/src/wrappers/sam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2bed cp applications/bed/conversion/src/wrappers/sam2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2bed cp applications/bed/conversion/src/wrappers/vcf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2bed cp applications/bed/conversion/src/wrappers/vcf2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2bed cp applications/bed/conversion/src/wrappers/wig2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2bed cp applications/bed/conversion/src/wrappers/wig2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2bed cp applications/bed/conversion/src/wrappers/bam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch cp applications/bed/conversion/src/wrappers/bam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch cp applications/bed/conversion/src/wrappers/gff2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2starch cp applications/bed/conversion/src/wrappers/gff2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gff2starch cp applications/bed/conversion/src/wrappers/gtf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2starch cp applications/bed/conversion/src/wrappers/gtf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gtf2starch cp applications/bed/conversion/src/wrappers/gvf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2starch cp applications/bed/conversion/src/wrappers/gvf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/gvf2starch cp applications/bed/conversion/src/wrappers/psl2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2starch cp applications/bed/conversion/src/wrappers/psl2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/psl2starch cp applications/bed/conversion/src/wrappers/rmsk2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2starch cp applications/bed/conversion/src/wrappers/rmsk2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/rmsk2starch cp applications/bed/conversion/src/wrappers/sam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2starch cp applications/bed/conversion/src/wrappers/sam2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/sam2starch cp applications/bed/conversion/src/wrappers/vcf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2starch cp applications/bed/conversion/src/wrappers/vcf2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/vcf2starch cp applications/bed/conversion/src/wrappers/wig2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2starch cp applications/bed/conversion/src/wrappers/wig2starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/wig2starch cp applications/bed/conversion/src/wrappers/bam2bed_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_sge cp applications/bed/conversion/src/wrappers/bam2bed_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_sge cp applications/bed/conversion/src/wrappers/bam2bed_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_slurm cp applications/bed/conversion/src/wrappers/bam2bed_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_slurm cp applications/bed/conversion/src/wrappers/bam2bed_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_gnuParallel cp applications/bed/conversion/src/wrappers/bam2bed_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2bed_gnuParallel cp applications/bed/conversion/src/wrappers/bam2starch_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_sge cp applications/bed/conversion/src/wrappers/bam2starch_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_sge cp applications/bed/conversion/src/wrappers/bam2starch_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_slurm cp applications/bed/conversion/src/wrappers/bam2starch_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_slurm cp applications/bed/conversion/src/wrappers/bam2starch_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_gnuParallel cp applications/bed/conversion/src/wrappers/bam2starch_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/bam2starch_gnuParallel cp applications/bed/starch/bin/starchcluster_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_sge /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starch-diff /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starch-diff /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/sort-bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/sort-bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedops/bin/bedops /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedops/bin/bedops /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/closestfeats/bin/closest-features /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/closestfeats/bin/closest-features /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedmap/bin/bedmap /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedmap/bin/bedmap /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedextract/bin/bedextract /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/bedextract/bin/bedextract /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/unstarch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/unstarch /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcat /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcat /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchstrip /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/starch/bin/starchstrip /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/conversion/bin/convert2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ cp applications/bed/conversion/bin/convert2bed /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/ + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bedops-2.4.26 + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bedops-2.4.26 extracting debug info from /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/convert2bed extracting debug info from /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/bin/convert2bed dwz: Too few files for multifile optimization dwz: Too few files for multifile optimization /usr/lib/rpm/sepdebugcrcfix: Updated 0 CRC32s, 1 CRC32s did match. /usr/lib/rpm/sepdebugcrcfix: Updated 0 CRC32s, 1 CRC32s did match. + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: bedops-2.4.26-1.el7.centos.x86_64 Processing files: bedops-2.4.26-1.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uhoRHy Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uhoRHy + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd bedops-2.4.26 + cd bedops-2.4.26 + DOCDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + DOCDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + export DOCDIR + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + cp -pr docs/Makefile docs/_static docs/assets docs/conf.py docs/content docs/index.rst docs/requirements.txt /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + cp -pr docs/Makefile docs/_static docs/assets docs/conf.py docs/content docs/index.rst docs/requirements.txt /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/doc/bedops-2.4.26 + exit 0 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Tdczvv Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Tdczvv + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd bedops-2.4.26 + cd bedops-2.4.26 + LICENSEDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + LICENSEDIR=/builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + export LICENSEDIR + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + cp -pr LICENSE /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + cp -pr LICENSE /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64/usr/share/licenses/bedops-2.4.26 + exit 0 + exit 0 Finding Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u " Finding Provides: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -P; done | /bin/sort -u " Finding Requires(interp): Finding Requires(interp): Finding Requires(rpmlib): Finding Requires(rpmlib): Finding Requires(verify): Finding Requires(verify): Finding Requires(pre): Finding Requires(pre): Finding Requires(post): Finding Requires(post): Finding Requires(preun): Finding Requires(preun): Finding Requires(postun): Finding Requires(postun): Finding Requires(pretrans): Finding Requires(pretrans): Finding Requires(posttrans): Finding Requires(posttrans): Finding Requires: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u | /usr/bin/sed -e '/\/usr\/bin\/Rscript/d'" Finding Requires: /bin/sh -c " while read FILE; do echo "${FILE}" | /usr/lib/rpm/rpmdeps -R; done | /bin/sort -u | /usr/bin/sed -e '/\/usr\/bin\/Rscript/d'" Provides: bedops = 2.4.26-1.el7.centos bedops(x86-64) = 2.4.26-1.el7.centos Provides: bedops = 2.4.26-1.el7.centos bedops(x86-64) = 2.4.26-1.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Requires: /bin/bash /bin/tcsh libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libjansson.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) /opt/local/bin/Rscript rtld(GNU_HASH) /usr/bin/env Requires: /bin/bash /bin/tcsh libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libjansson.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) /opt/local/bin/Rscript rtld(GNU_HASH) /usr/bin/env Processing files: bedops-debuginfo-2.4.26-1.el7.centos.x86_64 Processing files: bedops-debuginfo-2.4.26-1.el7.centos.x86_64 Provides: bedops-debuginfo = 2.4.26-1.el7.centos bedops-debuginfo(x86-64) = 2.4.26-1.el7.centos Provides: bedops-debuginfo = 2.4.26-1.el7.centos bedops-debuginfo(x86-64) = 2.4.26-1.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 warning: Could not canonicalize hostname: copr-builder-249271573.novalocal warning: Could not canonicalize hostname: copr-builder-249271573.novalocal Wrote: /builddir/build/RPMS/bedops-2.4.26-1.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/bedops-2.4.26-1.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/bedops-debuginfo-2.4.26-1.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/bedops-debuginfo-2.4.26-1.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.WfALqd Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.WfALqd + umask 022 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + cd bedops-2.4.26 + cd bedops-2.4.26 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bedops-2.4.26-1.el7.centos.x86_64 + exit 0 + exit 0 Child return code was: 0 Child return code was: 0