Mock Version: 1.2.21 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/last-seq.spec'], logger=gid=135env={'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100', 'PS1': ' \\s-\\v\\$ '}timeout=0user='mockbuild'shell=FalseprintOutput=FalsechrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-4353/root'uid=1001) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/last-seq.spec'] with env {'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100', 'PS1': ' \\s-\\v\\$ '} and shell False warning: Could not canonicalize hostname: copr-builder-77064269.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/last-seq-810-1.el7.centos.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/last-seq.spec'], private_network=Truelogger=gid=135env={'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100', 'PS1': ' \\s-\\v\\$ '}timeout=0user='mockbuild'shell=FalseprintOutput=FalsechrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-4353/root'uid=1001) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/last-seq.spec'] with env {'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100', 'PS1': ' \\s-\\v\\$ '} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.l4Wkdy + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf last-810 + /usr/bin/unzip -qq /builddir/build/SOURCES/last-810.zip + STATUS=0 + '[' 0 -ne 0 ']' + cd last-810 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nuJoFw + umask 022 + cd /builddir/build/BUILD + cd last-810 + make -j2 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11' make[1]: Entering directory `/builddir/build/BUILD/last-810/src' g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o Alphabet.o Alphabet.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o MultiSequence.o MultiSequence.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o io.o io.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o fileMap.o fileMap.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o TantanMasker.o TantanMasker.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o ScoreMatrix.o ScoreMatrix.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o LambdaCalculator.o LambdaCalculator.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o tantan.o tantan.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o lastdb.o lastdb.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o LastalArguments.o LastalArguments.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o DiagonalTable.o DiagonalTable.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SegmentPair.o SegmentPair.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o Alignment.o Alignment.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SegmentPairPot.o SegmentPairPot.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o AlignmentPot.o AlignmentPot.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GeneralizedAffineGapCosts.o GeneralizedAffineGapCosts.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o Centroid.o Centroid.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GeneticCode.o GeneticCode.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o LastEvaluer.o LastEvaluer.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o gaplessXdrop.o gaplessXdrop.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o AlignmentWrite.o AlignmentWrite.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o lastal.o lastal.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_alp.o alp/sls_alp.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_basic.o alp/sls_basic.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/njn_random.o alp/njn_random.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o split/cbrc_linalg.o split/cbrc_linalg.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o split/last-split.o split/last-split.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o split/last-split-main.o split/last-split-main.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc gcc -Wall -O2 -c -o last-merge-batches.o last-merge-batches.c g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o last-pair-probs.o last-pair-probs.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc last-pair-probs.cc: In function 'Alignment parseMaf(const char* const*, const char* const*, char, double, const std::set >&)': last-pair-probs.cc:430:74: warning: 'rSize' may be used uninitialized in this function [-Wmaybe-uninitialized] linesBeg, linesEnd, strand, scale, circularChroms); ^ last-pair-probs.cc:430:74: warning: 'rStart' may be used uninitialized in this function [-Wmaybe-uninitialized] last-pair-probs.cc:430:74: warning: 'rSpan' may be used uninitialized in this function [-Wmaybe-uninitialized] last-pair-probs.cc:430:74: warning: 'qStrand' may be used uninitialized in this function [-Wmaybe-uninitialized] last-pair-probs.cc:430:74: warning: 'qName' may be used uninitialized in this function [-Wmaybe-uninitialized] last-pair-probs.cc:430:74: warning: 'rName' may be used uninitialized in this function [-Wmaybe-uninitialized] g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -I. -c -o LastdbArguments.o LastdbArguments.cc g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -o lastal Alphabet.o MultiSequence.o CyclicSubsetSeed.o SubsetSuffixArray.o LastalArguments.o io.o fileMap.o TantanMasker.o ScoreMatrix.o SubsetMinimizerFinder.o tantan.o DiagonalTable.o SegmentPair.o Alignment.o GappedXdropAligner.o SegmentPairPot.o AlignmentPot.o GeneralizedAffineGapCosts.o Centroid.o LambdaCalculator.o TwoQualityScoreMatrix.o OneQualityScoreMatrix.o QualityPssmMaker.o GeneticCode.o LastEvaluer.o GreedyXdropAligner.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o SubsetSuffixArraySearch.o AlignmentWrite.o MultiSequenceQual.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o lastal.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -o last-split Alphabet.o MultiSequence.o fileMap.o split/cbrc_linalg.o split/last-split.o split/cbrc_split_aligner.o split/last-split-main.o split/cbrc_unsplit_alignment.o gcc -Wall -O2 -o last-merge-batches last-merge-batches.o g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -o last-pair-probs last-pair-probs.o last-pair-probs-main.o io.o g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -std=c++11 -o lastdb Alphabet.o MultiSequence.o CyclicSubsetSeed.o SubsetSuffixArray.o LastdbArguments.o io.o fileMap.o TantanMasker.o ScoreMatrix.o SubsetMinimizerFinder.o LambdaCalculator.o tantan.o SubsetSuffixArraySort.o MultiSequenceQual.o lastdb.o make[1]: Leaving directory `/builddir/build/BUILD/last-810/src' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vXHeYW + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 + cd last-810 + make install bindir=/builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin make[1]: Entering directory `/builddir/build/BUILD/last-810/src' if test -e ../.hg ; \ then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \ elif test -e ../.hg_archival.txt ; \ then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \ else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \ fi make[1]: Leaving directory `/builddir/build/BUILD/last-810/src' mkdir -p /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin cp src/last?? src/last-split src/last-merge-batches src/last-pair-probs scripts/* /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin + mkdir -p /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/last-seq + cp -a data/AT77.mat data/ATMAP.mat data/BISF.mat data/BISF.seed data/BISR.mat data/BISR.seed data/BL62.mat data/BL80.mat data/HOXD70.mat data/MAM4.seed data/MAM8.seed data/MIQS.mat data/MURPHY10.seed data/NEAR.seed data/PAM30.mat data/YASS.seed /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/last-seq + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/last-810 extracting debug info from /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin/last-pair-probs extracting debug info from /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin/last-merge-batches extracting debug info from /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin/last-split extracting debug info from /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin/lastdb extracting debug info from /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/bin/lastal /usr/lib/rpm/sepdebugcrcfix: Updated 4 CRC32s, 1 CRC32s did match. 3246 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: last-seq-810-1.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.MhgBvt + umask 022 + cd /builddir/build/BUILD + cd last-810 + DOCDIR=/builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/doc/last-seq-810 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/doc/last-seq-810 + cp -pr ChangeLog.txt /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/doc/last-seq-810 + cp -pr doc/FAQ.html doc/FAQ.txt doc/Makefile doc/bisulfite.html doc/bisulfite.txt doc/last-doc.css doc/last-dotplot.html doc/last-dotplot.txt doc/last-evalues.html doc/last-evalues.txt doc/last-map-probs.html doc/last-map-probs.txt doc/last-matrices.html doc/last-matrices.txt doc/last-pair-probs.html doc/last-pair-probs.txt doc/last-papers.html doc/last-papers.txt doc/last-parallel.html doc/last-parallel.txt doc/last-postmask.html doc/last-postmask.txt doc/last-repeats.html doc/last-repeats.txt doc/last-scripts.txt doc/last-seeds.html doc/last-seeds.txt doc/last-split.html doc/last-split.txt doc/last-train.html doc/last-train.txt doc/last-tuning.html doc/last-tuning.txt doc/last-tutorial.html doc/last-tutorial.txt doc/last.html doc/last.txt doc/lastal.html doc/lastal.txt doc/lastdb.html doc/lastdb.txt doc/maf-convert.html doc/maf-convert.txt doc/tag-seeds.txt /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/doc/last-seq-810 + cp -pr examples /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/doc/last-seq-810 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.k6623Z + umask 022 + cd /builddir/build/BUILD + cd last-810 + LICENSEDIR=/builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/licenses/last-seq-810 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/licenses/last-seq-810 + cp -pr COPYING.txt /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64/usr/share/licenses/last-seq-810 + exit 0 Provides: last-seq = 810-1.el7.centos last-seq(x86-64) = 810-1.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash /bin/sh /usr/bin/env libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: last-seq-debuginfo-810-1.el7.centos.x86_64 Provides: last-seq-debuginfo = 810-1.el7.centos last-seq-debuginfo(x86-64) = 810-1.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 warning: Could not canonicalize hostname: copr-builder-77064269.novalocal Wrote: /builddir/build/RPMS/last-seq-810-1.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/last-seq-debuginfo-810-1.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.egXoCJ + umask 022 + cd /builddir/build/BUILD + cd last-810 + /usr/bin/rm -rf /builddir/build/BUILDROOT/last-seq-810-1.el7.centos.x86_64 + exit 0 Child return code was: 0