Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18a' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8486779-fedora-40-x86_64 --chroot fedora-40-x86_64 Version: 1.2 PID: 56854 Logging PID: 56855 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8486779, 'buildroot_pkgs': [], 'chroot': 'fedora-40-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7db6f50354370fee5d0f98b3a9fd804a038cb39d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/python-netpyne', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-netpyne', 'package_version': '1.0.7-3', 'project_dirname': 'jinja2-3.1.5-f40:custom:isolated', 'project_name': 'jinja2-3.1.5-f40', 'project_owner': 'churchyard', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/jinja2-3.1.5-f40/fedora-40-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f40-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch'}], 'sandbox': 'churchyard/jinja2-3.1.5-f40--churchyard', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'churchyard', 'tags': [], 'task_id': '8486779-fedora-40-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/python-netpyne /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/python-netpyne', '/var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne'... Running: git checkout 7db6f50354370fee5d0f98b3a9fd804a038cb39d -- cmd: ['git', 'checkout', '7db6f50354370fee5d0f98b3a9fd804a038cb39d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne rc: 0 stdout: stderr: Note: switching to '7db6f50354370fee5d0f98b3a9fd804a038cb39d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7db6f50 automatic import of python-netpyne Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading netpyne-1.0.7.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o netpyne-1.0.7.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/jinja2-3.1.5-f40:custom:isolated/python-netpyne/netpyne-1.0.7.tar.gz/md5/51a02ce82fd302b3447d7357767031c7/netpyne-1.0.7.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 28.5M 100 28.5M 0 0 69.4M 0 --:--:-- --:--:-- --:--:-- 69.5M INFO: Reading stdout from command: md5sum netpyne-1.0.7.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne/python-netpyne.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736345771.991236 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne/python-netpyne.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736345771.991236 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne/python-netpyne.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736345771.991236/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Tagging container image as mock-bootstrap-44a49623-9e97-4f40-be38-56469f4fb5da INFO: Checking that cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 image matches host's architecture INFO: Copy content of container cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 to /var/lib/mock/fedora-40-x86_64-bootstrap-1736345771.991236/root INFO: mounting cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 with podman image mount INFO: image cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 as /var/lib/containers/storage/overlay/ea6459704420479040f5ae1ac423e605b3307fe5ce36d12d2981f2a18aad83a5/merged INFO: umounting image cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 (/var/lib/containers/storage/overlay/ea6459704420479040f5ae1ac423e605b3307fe5ce36d12d2981f2a18aad83a5/merged) with podman image umount INFO: Removing image mock-bootstrap-44a49623-9e97-4f40-be38-56469f4fb5da INFO: Using 'dnf4' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf4 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 22 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 45 MB/s | 14 MB 00:00 fedora 16 MB/s | 20 MB 00:01 updates 6.5 MB/s | 12 MB 00:01 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 690 k dnf5-plugins x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 351 k Installing dependencies: fmt x86_64 10.2.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 125 k libdnf5 x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 M libdnf5-cli x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 231 k sdbus-cpp x86_64 1.4.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 110 k Transaction Summary ============================================================================================================== Install 6 Packages Total download size: 2.4 M Installed size: 6.9 M Downloading Packages: (1/6): fmt-10.2.1-5.fc40.x86_64.rpm 1.4 MB/s | 125 kB 00:00 (2/6): dnf5-plugins-5.1.17-3.fc40.x86_64.rpm 4.0 MB/s | 351 kB 00:00 (3/6): dnf5-5.1.17-3.fc40.x86_64.rpm 6.2 MB/s | 690 kB 00:00 (4/6): libdnf5-5.1.17-3.fc40.x86_64.rpm 29 MB/s | 1.0 MB 00:00 (5/6): libdnf5-cli-5.1.17-3.fc40.x86_64.rpm 7.1 MB/s | 231 kB 00:00 (6/6): sdbus-cpp-1.4.0-2.fc40.x86_64.rpm 5.5 MB/s | 110 kB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 2.4 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-5.fc40.x86_64 1/6 Installing : libdnf5-5.1.17-3.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.17-3.fc40.x86_64 3/6 Installing : sdbus-cpp-1.4.0-2.fc40.x86_64 4/6 Installing : dnf5-5.1.17-3.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.17-3.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.17-3.fc40.x86_64 6/6 Installed: dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 fmt-10.2.1-5.fc40.x86_64 libdnf5-5.1.17-3.fc40.x86_64 libdnf5-cli-5.1.17-3.fc40.x86_64 sdbus-cpp-1.4.0-2.fc40.x86_64 Complete! INFO: Switching package manager from dnf4 to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1736345771.991236/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 python3-dnf-4.22.0-1.fc40.noarch yum-4.22.0-1.fc40.noarch dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 1.1 MiB/s | 29.5 KiB | 00m00s fedora 100% | 1.1 MiB/s | 30.1 KiB | 00m00s Copr repository 100% | 52.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 70.9 KiB/s | 3.8 KiB | 00m00s Repositories loaded. 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3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 MiB gzip x86_64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 385.0 KiB info x86_64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 357.8 KiB patch x86_64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 262.8 KiB redhat-rpm-config noarch 288-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 173.7 KiB sed x86_64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 861.5 KiB shadow-utils x86_64 2:4.15.1-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.1 MiB tar x86_64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.9 MiB unzip x86_64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 382.8 KiB util-linux x86_64 2.40.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 3.7 MiB which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.2 KiB xz x86_64 1:5.4.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.0 MiB Installing dependencies: alternatives x86_64 1.27-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 66.3 KiB ansible-srpm-macros noarch 1-16.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 35.7 KiB audit-libs x86_64 4.0.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 327.4 KiB authselect x86_64 1.5.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 153.6 KiB authselect-libs x86_64 1.5.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 818.2 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 0.0 B binutils x86_64 2.41-38.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 26.4 MiB binutils-gold x86_64 2.41-38.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.4 MiB coreutils-common x86_64 9.4-9.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 11.4 MiB cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 238.9 KiB crypto-policies noarch 20241011-1.git5930b9a.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 158.0 KiB curl x86_64 8.6.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 738.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.3 MiB debugedit x86_64 5.0-18.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 199.3 KiB dwz x86_64 0.15-8.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 294.9 KiB ed x86_64 1.20.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 40.1 KiB elfutils x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.7 MiB elfutils-debuginfod-client x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.2 KiB elfutils-default-yama-scope noarch 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.2 MiB elfutils-libs x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 670.3 KiB fedora-gpg-keys noarch 40-2 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http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 709.9 KiB rpm-sequoia x86_64 1.7.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.4 MiB systemd-libs x86_64 255.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.9 MiB util-linux-core x86_64 2.40.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 90.2 KiB xz-libs x86_64 1:5.4.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 209.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.1 KiB zip x86_64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. 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ca-certificates-0:2024.2.69_v8.0.401-1.0.fc40.n [ 75/155] Installing gzip-0:1.13-1.fc40 100% | 76.3 MiB/s | 390.6 KiB | 00m00s [ 76/155] Installing authselect-libs-0: 100% | 81.4 MiB/s | 833.2 KiB | 00m00s [ 77/155] Installing authselect-0:1.5.0 100% | 51.4 MiB/s | 157.9 KiB | 00m00s [ 78/155] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [ 79/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [ 80/155] Installing rpm-sequoia-0:1.7. 100% | 266.0 MiB/s | 2.4 MiB | 00m00s [ 81/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.4 KiB | 00m00s [ 82/155] Installing util-linux-core-0: 100% | 123.8 MiB/s | 1.5 MiB | 00m00s [ 83/155] Installing tar-2:1.35-3.fc40. 100% | 210.8 MiB/s | 3.0 MiB | 00m00s [ 84/155] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [ 85/155] Installing shadow-utils-2:4.1 100% | 64.2 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 [ 86/155] Installing libutempter-0:1.2. 100% | 29.2 MiB/s | 59.7 KiB | 00m00s [ 87/155] Installing zip-0:3.0-40.fc40. 100% | 138.1 MiB/s | 707.1 KiB | 00m00s [ 88/155] Installing gdbm-1:1.23-6.fc40 100% | 91.0 MiB/s | 465.8 KiB | 00m00s [ 89/155] Installing cyrus-sasl-lib-0:2 100% | 190.3 MiB/s | 2.3 MiB | 00m00s [ 90/155] Installing zstd-0:1.5.6-1.fc4 100% | 209.5 MiB/s | 1.7 MiB | 00m00s [ 91/155] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB | 00m00s [ 92/155] Installing bzip2-0:1.0.8-18.f 100% | 47.0 MiB/s | 96.2 KiB | 00m00s [ 93/155] Installing libxml2-0:2.12.9-1 100% | 190.2 MiB/s | 1.7 MiB | 00m00s [ 94/155] Installing libarchive-0:3.7.2 100% | 180.6 MiB/s | 924.5 KiB | 00m00s [ 95/155] Installing sqlite-libs-0:3.45 100% | 233.6 MiB/s | 1.4 MiB | 00m00s [ 96/155] Installing rpm-libs-0:4.19.1. 100% | 173.7 MiB/s | 711.4 KiB | 00m00s [ 97/155] Installing ed-0:1.20.2-1.fc40 100% | 72.8 MiB/s | 149.2 KiB | 00m00s [ 98/155] Installing patch-0:2.7.6-24.f 100% | 86.0 MiB/s | 264.3 KiB | 00m00s [ 99/155] Installing elfutils-default-y 100% | 136.2 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.192-7.fc40.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.192-7.fc40.noar [100/155] Installing cpio-0:2.15-1.fc40 100% | 122.2 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-5 100% | 158.6 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libpkgconf-0:2.1.1 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [103/155] Installing pkgconf-0:2.1.1-2. 100% | 41.7 MiB/s | 85.4 KiB | 00m00s [104/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [105/155] Installing libverto-0:0.3.2-8 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [106/155] Installing krb5-libs-0:1.21.3 100% | 164.8 MiB/s | 2.3 MiB | 00m00s [107/155] Installing libtirpc-0:1.3.6-1 100% | 99.9 MiB/s | 204.5 KiB | 00m00s [108/155] Installing libnsl2-0:2.0.1-1. 100% | 28.8 MiB/s | 59.0 KiB | 00m00s [109/155] Installing pam-0:1.6.1-5.fc40 100% | 67.4 MiB/s | 1.8 MiB | 00m00s [110/155] Installing libssh-0:0.10.6-5. 100% | 124.8 MiB/s | 511.4 KiB | 00m00s [111/155] Installing libgomp-0:14.2.1-3 100% | 170.9 MiB/s | 525.0 KiB | 00m00s [112/155] Installing json-c-0:0.17-3.fc 100% | 81.7 MiB/s | 83.6 KiB | 00m00s [113/155] Installing xxhash-libs-0:0.8. 100% | 89.5 MiB/s | 91.6 KiB | 00m00s [114/155] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB | 00m00s [115/155] Installing libbrotli-0:1.1.0- 100% | 162.5 MiB/s | 831.8 KiB | 00m00s [116/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [117/155] Installing openldap-0:2.6.8-1 100% | 125.8 MiB/s | 644.0 KiB | 00m00s [118/155] Installing libcurl-0:8.6.0-10 100% | 189.9 MiB/s | 777.9 KiB | 00m00s [119/155] Installing elfutils-debuginfo 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [120/155] Installing elfutils-libs-0:0. 100% | 164.1 MiB/s | 672.2 KiB | 00m00s [121/155] Installing binutils-gold-0:2. 100% | 81.9 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-38.fc40.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.41-38.fc40.x86_64 [122/155] Installing binutils-0:2.41-38 100% | 186.4 MiB/s | 26.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-38.fc40.x86_64 >>> Stop post-install scriptlet: binutils-0:2.41-38.fc40.x86_64 [123/155] Installing elfutils-0:0.192-7 100% | 204.6 MiB/s | 2.7 MiB | 00m00s [124/155] Installing gdb-minimal-0:15.2 100% | 199.9 MiB/s | 13.0 MiB | 00m00s [125/155] Installing debugedit-0:5.0-18 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [126/155] Installing rpm-build-libs-0:4 100% | 97.3 MiB/s | 199.2 KiB | 00m00s [127/155] Installing curl-0:8.6.0-10.fc 100% | 27.8 MiB/s | 740.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [128/155] Installing rpm-0:4.19.1.1-1.f 100% | 74.9 MiB/s | 2.4 MiB | 00m00s [129/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [130/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [131/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [132/155] Installing pkgconf-m4-0:2.1.1 100% | 14.0 MiB/s | 14.3 KiB | 00m00s [133/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [134/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [135/155] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [136/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 384.0 B | 00m00s [137/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [138/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [139/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [140/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [141/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [142/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [143/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [144/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [145/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [147/155] Installing python-srpm-macros 100% | 50.6 MiB/s | 51.8 KiB | 00m00s [148/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [149/155] Installing go-srpm-macros-0:3 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 37.5 MiB/s | 191.9 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 35.5 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [153/155] Installing util-linux-0:2.40. 100% | 69.4 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 257.5 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0 >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.27-1.fc40.x86_64 ansible-srpm-macros-1-16.fc40.noarch audit-libs-4.0.2-1.fc40.x86_64 authselect-1.5.0-6.fc40.x86_64 authselect-libs-1.5.0-6.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-38.fc40.x86_64 binutils-gold-2.41-38.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc40.noarch coreutils-9.4-9.fc40.x86_64 coreutils-common-9.4-9.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20241011-1.git5930b9a.fc40.noarch curl-8.6.0-10.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-18.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-8.fc40.x86_64 ed-1.20.2-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.192-7.fc40.x86_64 elfutils-debuginfod-client-0.192-7.fc40.x86_64 elfutils-default-yama-scope-0.192-7.fc40.noarch elfutils-libelf-0.192-7.fc40.x86_64 elfutils-libs-0.192-7.fc40.x86_64 fedora-gpg-keys-40-2.noarch fedora-release-40-40.noarch fedora-release-common-40-40.noarch fedora-release-identity-basic-40-40.noarch fedora-repos-40-2.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-9.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.4.0-1.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-15.2-3.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc40.noarch glibc-2.39-33.fc40.x86_64 glibc-common-2.39-33.fc40.x86_64 glibc-gconv-extra-2.39-33.fc40.x86_64 glibc-minimal-langpack-2.39-33.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 json-c-0.17-3.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-2.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-7.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.2-1.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-10.fc40.x86_64 libeconf-0.6.2-2.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40.2-1.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.2.1-3.fc40.x86_64 libgomp-14.2.1-3.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.2-1.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-2.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.7-5.fc40.x86_64 libsemanage-3.7-2.fc40.x86_64 libsepol-3.7-2.fc40.x86_64 libsmartcols-2.40.2-1.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.2.1-3.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.6-1.rc3.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40.2-1.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.37-4.fc40.x86_64 libxml2-2.12.9-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.8-1.fc40.x86_64 openssl-libs-3.2.2-3.fc40.x86_64 p11-kit-0.25.5-1.fc40.x86_64 p11-kit-trust-0.25.5-1.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-5.fc40.x86_64 pam-libs-1.6.1-5.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc40.x86_64 pcre2-syntax-10.44-1.fc40.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-2.fc40.x86_64 pkgconf-m4-2.1.1-2.fc40.noarch pkgconf-pkg-config-2.1.1-2.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.16.3-1.fc40.noarch python-srpm-macros-3.12-8.fc40.noarch qt5-srpm-macros-5.15.15-1.fc40.noarch qt6-srpm-macros-6.7.2-2.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 rust-srpm-macros-26.3-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-4.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.15-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.2-1.fc40.x86_64 util-linux-core-2.40.2-1.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.3-1.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1736345771.991236/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-q9flc4y2/python-netpyne/python-netpyne.spec) Config(child) 0 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-netpyne-1.0.7-3.fc40.src.rpm) Config(fedora-40-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736345771.991236/root. INFO: reusing tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736345771.991236/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1736345771.991236/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 python3-dnf-4.22.0-1.fc40.noarch yum-4.22.0-1.fc40.noarch dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 Finish: chroot init Start: build phase for python-netpyne-1.0.7-3.fc40.src.rpm Start: build setup for python-netpyne-1.0.7-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.src.rpm Updating and loading repositories: fedora 100% | 1.0 MiB/s | 30.1 KiB | 00m00s Copr repository 100% | 50.5 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 69.7 KiB/s | 3.8 KiB | 00m00s updates 100% | 921.1 KiB/s | 29.5 KiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 6.4 KiB readline-devel x86_64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 553.0 KiB tzdata noarch 2024a-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.6 MiB xorg-x11-proto-devel noarch 2024.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.7 MiB Transaction Summary: Installing: 122 packages Total size of inbound packages is 109 MiB. 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| 198.8 MiB/s | 4.8 MiB | 00m00s [120/124] Installing annobin-plugin-gcc 100% | 32.9 MiB/s | 977.9 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch [121/124] Installing python3-devel-0:3. 100% | 72.8 MiB/s | 1.3 MiB | 00m00s [122/124] Installing python3-dill-0:0.3 100% | 91.8 MiB/s | 1.0 MiB | 00m00s [123/124] Installing python3-setuptools 100% | 115.9 MiB/s | 7.3 MiB | 00m00s [124/124] Installing gcc-plugin-annobin 100% | 176.4 KiB/s | 58.6 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 122 package(s). Finish: build setup for python-netpyne-1.0.7-3.fc40.src.rpm Start: rpmbuild python-netpyne-1.0.7-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rXhvFf + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.7 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/netpyne-1.0.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.7 + rm -rf /builddir/build/BUILD/netpyne-1.0.7-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/netpyne-1.0.7-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/767.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -e 's/"future",//' -i setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.bARnYD + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info creating netpyne.egg-info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt writing manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 1.1 MiB/s | 29.5 KiB | 00m00s fedora 100% | 1.1 MiB/s | 30.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 73.7 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 50.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-3.fc40.x86_64" is already installed. Package "neuron-devel-8.2.2-9.fc40.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-dill-0.3.8-1.fc40.noarch" is already installed. Package "python3-neuron-8.2.2-9.fc40.x86_64" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 23.3.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 14.2 MiB python3-wheel noarch 1:0.41.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 507.1 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 0 B. After this operation 15 MiB will be used (install 15 MiB, remove 0 B). [1/2] python3-pip-0:23.3.2-2.fc40.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/2] python3-wheel-1:0.41.2-3.fc40.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [1/4] Verify package files 100% | 181.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 80.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.41.2 100% | 57.1 MiB/s | 526.1 KiB | 00m00s [4/4] Installing python3-pip-0:23.3.2-2 100% | 93.0 MiB/s | 14.5 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 Warning: skipped PGP checks for 2 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.kdiVe0 + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: numpy Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: scipy Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib-scalebar Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: pandas Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: bokeh Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: schema Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: lfpykit Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: tqdm + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 775.7 KiB/s | 29.5 KiB | 00m00s fedora 100% | 1.0 MiB/s | 30.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 68.4 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 48.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-3.fc40.x86_64" is already installed. Package "neuron-devel-8.2.2-9.fc40.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-dill-0.3.8-1.fc40.noarch" is already installed. Package "python3-neuron-8.2.2-9.fc40.x86_64" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-pip-23.3.2-2.fc40.noarch" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed. 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1.26.20-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 999.0 KiB tcl x86_64 1:8.6.13-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.2 MiB tk x86_64 1:8.6.13-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 3.6 MiB xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 78.4 KiB Transaction Summary: Installing: 85 packages Total size of inbound packages is 80 MiB. 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| 219.2 MiB/s | 53.7 MiB | 00m00s [85/87] Installing python3-matplotlib-s 100% | 48.4 MiB/s | 148.6 KiB | 00m00s [86/87] Installing python3-tqdm-0:4.66. 100% | 72.0 MiB/s | 589.6 KiB | 00m00s [87/87] Installing python3-schema-0:0.7 100% | 611.2 KiB/s | 136.3 KiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 Warning: skipped PGP checks for 85 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ukTFLu + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5.1) Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: tqdm (installed: tqdm 4.66.5) + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 796.6 KiB/s | 29.5 KiB | 00m00s fedora 100% | 858.8 KiB/s | 30.1 KiB | 00m00s Copr repository 100% | 43.3 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 64.9 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Nothing to do. Package "gcc-c++-14.2.1-3.fc40.x86_64" is already installed. Package "neuron-devel-8.2.2-9.fc40.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-dill-0.3.8-1.fc40.noarch" is already installed. Package "python3-neuron-8.2.2-9.fc40.x86_64" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-bokeh-2.3.0-13.fc40.noarch" is already installed. Package "python3-lfpykit-0.5.1-3.fc40.noarch" is already installed. Package "python3-matplotlib-3.8.4-1.fc40.x86_64" is already installed. Package "python3-matplotlib-scalebar-0.8.1^20230706git2c57173-6.fc40.noarch" is already installed. Package "python3-numpy-1:1.26.4-3.fc40.x86_64" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-pandas-2.2.1-1.fc40.x86_64" is already installed. Package "python3-pip-23.3.2-2.fc40.noarch" is already installed. Package "python3-schema-0.7.5-9.fc40.noarch" is already installed. Package "python3-scipy-1.11.3-11.fc40.x86_64" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-tqdm-4.66.5-1.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YIthL6 + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5.1) Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: tqdm (installed: tqdm 4.66.5) + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bXP3co + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir Processing /builddir/build/BUILD/netpyne-1.0.7 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info writing /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-cbxc4yy_/netpyne-1.0.7.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: netpyne Building wheel for netpyne (pyproject.toml): started Running command Building wheel for netpyne (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/netpyne copying netpyne/__init__.py -> build/lib/netpyne creating build/lib/netpyne/analysis copying netpyne/analysis/__init__.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd.py -> build/lib/netpyne/analysis copying netpyne/analysis/dipole.py -> build/lib/netpyne/analysis copying netpyne/analysis/filter.py -> build/lib/netpyne/analysis copying netpyne/analysis/info.py -> build/lib/netpyne/analysis copying netpyne/analysis/interactive.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp_orig.py -> build/lib/netpyne/analysis copying netpyne/analysis/mapping.py -> build/lib/netpyne/analysis copying netpyne/analysis/network.py -> build/lib/netpyne/analysis copying netpyne/analysis/rxd.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/tools.py -> build/lib/netpyne/analysis copying netpyne/analysis/traces.py -> build/lib/netpyne/analysis copying netpyne/analysis/utils.py -> build/lib/netpyne/analysis copying netpyne/analysis/wrapper.py -> build/lib/netpyne/analysis creating build/lib/netpyne/batch copying netpyne/batch/__init__.py -> build/lib/netpyne/batch copying netpyne/batch/asd_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/batch.py -> build/lib/netpyne/batch copying netpyne/batch/evol.py -> build/lib/netpyne/batch copying netpyne/batch/grid.py -> build/lib/netpyne/batch copying netpyne/batch/optuna_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/sbi_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/utils.py -> build/lib/netpyne/batch creating build/lib/netpyne/batchtools copying netpyne/batchtools/__init__.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/analysis.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/comm.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/evol.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/header.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/runners.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/search.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/submits.py -> build/lib/netpyne/batchtools creating build/lib/netpyne/cell copying netpyne/cell/NML2Cell.py -> build/lib/netpyne/cell copying netpyne/cell/NML2SpikeSource.py -> build/lib/netpyne/cell copying netpyne/cell/__init__.py -> build/lib/netpyne/cell copying netpyne/cell/cell.py -> build/lib/netpyne/cell copying netpyne/cell/compartCell.py -> build/lib/netpyne/cell copying netpyne/cell/inputs.py -> build/lib/netpyne/cell copying netpyne/cell/pointCell.py -> build/lib/netpyne/cell creating build/lib/netpyne/conversion copying netpyne/conversion/__init__.py -> build/lib/netpyne/conversion copying netpyne/conversion/excel.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuromlFormat.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuronPyHoc.py -> build/lib/netpyne/conversion copying netpyne/conversion/pythonScript.py -> build/lib/netpyne/conversion copying netpyne/conversion/sonataImport.py -> build/lib/netpyne/conversion creating build/lib/netpyne/metadata copying netpyne/metadata/__init__.py -> build/lib/netpyne/metadata copying netpyne/metadata/api.py -> build/lib/netpyne/metadata copying netpyne/metadata/metadata.py -> build/lib/netpyne/metadata creating build/lib/netpyne/network copying netpyne/network/__init__.py -> build/lib/netpyne/network copying netpyne/network/conn.py -> build/lib/netpyne/network copying netpyne/network/modify.py -> build/lib/netpyne/network copying netpyne/network/netrxd.py -> build/lib/netpyne/network copying netpyne/network/network.py -> build/lib/netpyne/network copying netpyne/network/pop.py -> build/lib/netpyne/network copying netpyne/network/shape.py -> build/lib/netpyne/network copying netpyne/network/stim.py -> build/lib/netpyne/network copying netpyne/network/subconn.py -> build/lib/netpyne/network creating build/lib/netpyne/plotting copying netpyne/plotting/__init__.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotCSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPLocations.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPSpectrogram.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotRaster.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotShape.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeFreq.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeHist.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotTimeSeries.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotTimeSeriesPSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotter.py -> build/lib/netpyne/plotting creating build/lib/netpyne/sim copying netpyne/sim/__init__.py -> build/lib/netpyne/sim copying netpyne/sim/gather.py -> build/lib/netpyne/sim copying netpyne/sim/load.py -> build/lib/netpyne/sim copying netpyne/sim/run.py -> build/lib/netpyne/sim copying netpyne/sim/save.py -> build/lib/netpyne/sim copying netpyne/sim/setup.py -> build/lib/netpyne/sim copying netpyne/sim/utils.py -> build/lib/netpyne/sim copying netpyne/sim/validator.py -> build/lib/netpyne/sim copying netpyne/sim/wrappers.py -> build/lib/netpyne/sim creating build/lib/netpyne/specs copying netpyne/specs/__init__.py -> build/lib/netpyne/specs copying netpyne/specs/dicts.py -> build/lib/netpyne/specs copying netpyne/specs/netParams.py -> build/lib/netpyne/specs copying netpyne/specs/simConfig.py -> build/lib/netpyne/specs copying netpyne/specs/utils.py -> build/lib/netpyne/specs creating build/lib/netpyne/support copying netpyne/support/__init__.py -> build/lib/netpyne/support copying netpyne/support/bsmart.py -> build/lib/netpyne/support copying netpyne/support/filter.py -> build/lib/netpyne/support copying netpyne/support/morlet.py -> build/lib/netpyne/support copying netpyne/support/morphology.py -> build/lib/netpyne/support copying netpyne/support/nml_reader.py -> build/lib/netpyne/support copying netpyne/support/recxelectrode.py -> build/lib/netpyne/support copying netpyne/support/scalebar.py -> build/lib/netpyne/support copying netpyne/support/stackedBarGraph.py -> build/lib/netpyne/support creating build/lib/netpyne/tests copying netpyne/tests/__init__.py -> build/lib/netpyne/tests copying netpyne/tests/checks.py -> build/lib/netpyne/tests copying netpyne/tests/tests.py -> build/lib/netpyne/tests copying netpyne/tests/validate_tests.py -> build/lib/netpyne/tests installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/netpyne copying build/lib/netpyne/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne creating build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/dipole.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/info.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/interactive.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp_orig.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/mapping.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/network.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/rxd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/tools.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/traces.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/wrapper.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis creating build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/asd_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/batch.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/grid.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/optuna_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/sbi_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/batch creating build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/analysis.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/comm.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/header.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/runners.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/search.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/submits.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools creating build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2Cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2SpikeSource.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/compartCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/inputs.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/pointCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell creating build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/excel.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuromlFormat.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuronPyHoc.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/pythonScript.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/sonataImport.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion creating build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/api.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/metadata.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata creating build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/conn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/modify.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/netrxd.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/network.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/pop.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/shape.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/stim.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/subconn.py -> build/bdist.linux-x86_64/wheel/netpyne/network creating build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotCSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPLocations.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPSpectrogram.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotRaster.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotShape.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeFreq.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeHist.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotTimeSeries.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotTimeSeriesPSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotter.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting creating build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/gather.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/load.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/run.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/save.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/setup.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validator.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/wrappers.py -> build/bdist.linux-x86_64/wheel/netpyne/sim creating build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/dicts.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/netParams.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/simConfig.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/specs creating build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/bsmart.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morlet.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morphology.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/nml_reader.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/recxelectrode.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/scalebar.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/stackedBarGraph.py -> build/bdist.linux-x86_64/wheel/netpyne/support creating build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/checks.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/validate_tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests running install_egg_info running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Copying netpyne.egg-info to build/bdist.linux-x86_64/wheel/netpyne-1.0.7-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/netpyne-1.0.7.dist-info/WHEEL creating '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-wheel-6hw2__zn/.tmp-559tmxsg/netpyne-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'netpyne/__init__.py' adding 'netpyne/analysis/__init__.py' adding 'netpyne/analysis/csd.py' adding 'netpyne/analysis/dipole.py' adding 'netpyne/analysis/filter.py' adding 'netpyne/analysis/info.py' adding 'netpyne/analysis/interactive.py' adding 'netpyne/analysis/lfp.py' adding 'netpyne/analysis/lfp_orig.py' adding 'netpyne/analysis/mapping.py' adding 'netpyne/analysis/network.py' adding 'netpyne/analysis/rxd.py' adding 'netpyne/analysis/spikes.py' adding 'netpyne/analysis/spikes_legacy.py' adding 'netpyne/analysis/tools.py' adding 'netpyne/analysis/traces.py' adding 'netpyne/analysis/utils.py' adding 'netpyne/analysis/wrapper.py' adding 'netpyne/batch/__init__.py' adding 'netpyne/batch/asd_parallel.py' adding 'netpyne/batch/batch.py' adding 'netpyne/batch/evol.py' adding 'netpyne/batch/grid.py' adding 'netpyne/batch/optuna_parallel.py' adding 'netpyne/batch/sbi_parallel.py' adding 'netpyne/batch/utils.py' adding 'netpyne/batchtools/__init__.py' adding 'netpyne/batchtools/analysis.py' adding 'netpyne/batchtools/comm.py' adding 'netpyne/batchtools/evol.py' adding 'netpyne/batchtools/header.py' adding 'netpyne/batchtools/runners.py' adding 'netpyne/batchtools/search.py' adding 'netpyne/batchtools/submits.py' adding 'netpyne/cell/NML2Cell.py' adding 'netpyne/cell/NML2SpikeSource.py' adding 'netpyne/cell/__init__.py' adding 'netpyne/cell/cell.py' adding 'netpyne/cell/compartCell.py' adding 'netpyne/cell/inputs.py' adding 'netpyne/cell/pointCell.py' adding 'netpyne/conversion/__init__.py' adding 'netpyne/conversion/excel.py' adding 'netpyne/conversion/neuromlFormat.py' adding 'netpyne/conversion/neuronPyHoc.py' adding 'netpyne/conversion/pythonScript.py' adding 'netpyne/conversion/sonataImport.py' adding 'netpyne/metadata/__init__.py' adding 'netpyne/metadata/api.py' adding 'netpyne/metadata/metadata.py' adding 'netpyne/network/__init__.py' adding 'netpyne/network/conn.py' adding 'netpyne/network/modify.py' adding 'netpyne/network/netrxd.py' adding 'netpyne/network/network.py' adding 'netpyne/network/pop.py' adding 'netpyne/network/shape.py' adding 'netpyne/network/stim.py' adding 'netpyne/network/subconn.py' adding 'netpyne/plotting/__init__.py' adding 'netpyne/plotting/plotCSD.py' adding 'netpyne/plotting/plotLFPLocations.py' adding 'netpyne/plotting/plotLFPSpectrogram.py' adding 'netpyne/plotting/plotRaster.py' adding 'netpyne/plotting/plotShape.py' adding 'netpyne/plotting/plotSpikeFreq.py' adding 'netpyne/plotting/plotSpikeHist.py' adding 'netpyne/plotting/plotTimeSeries.py' adding 'netpyne/plotting/plotTimeSeriesPSD.py' adding 'netpyne/plotting/plotter.py' adding 'netpyne/sim/__init__.py' adding 'netpyne/sim/gather.py' adding 'netpyne/sim/load.py' adding 'netpyne/sim/run.py' adding 'netpyne/sim/save.py' adding 'netpyne/sim/setup.py' adding 'netpyne/sim/utils.py' adding 'netpyne/sim/validator.py' adding 'netpyne/sim/wrappers.py' adding 'netpyne/specs/__init__.py' adding 'netpyne/specs/dicts.py' adding 'netpyne/specs/netParams.py' adding 'netpyne/specs/simConfig.py' adding 'netpyne/specs/utils.py' adding 'netpyne/support/__init__.py' adding 'netpyne/support/bsmart.py' adding 'netpyne/support/filter.py' adding 'netpyne/support/morlet.py' adding 'netpyne/support/morphology.py' adding 'netpyne/support/nml_reader.py' adding 'netpyne/support/recxelectrode.py' adding 'netpyne/support/scalebar.py' adding 'netpyne/support/stackedBarGraph.py' adding 'netpyne/tests/__init__.py' adding 'netpyne/tests/checks.py' adding 'netpyne/tests/tests.py' adding 'netpyne/tests/validate_tests.py' adding 'netpyne-1.0.7.dist-info/LICENSE' adding 'netpyne-1.0.7.dist-info/METADATA' adding 'netpyne-1.0.7.dist-info/WHEEL' adding 'netpyne-1.0.7.dist-info/top_level.txt' adding 'netpyne-1.0.7.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for netpyne (pyproject.toml): finished with status 'done' Created wheel for netpyne: filename=netpyne-1.0.7-py3-none-any.whl size=416146 sha256=e358426f50ea74e5475a5a920b14952280746de5e9fc209192eaf8a0b56362ff Stored in directory: /builddir/.cache/pip/wheels/b3/13/5c/60f220ea9b14acc9de1ff836fffe9229d735340582e0bb5919 Successfully built netpyne + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OC6wzT + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 ++ ls /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir/netpyne-1.0.7-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=netpyne==1.0.7 + '[' -z netpyne==1.0.7 ']' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir netpyne==1.0.7 Using pip 23.3.2 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir Processing ./pyproject-wheeldir/netpyne-1.0.7-py3-none-any.whl Installing collected packages: netpyne Successfully installed netpyne-1.0.7 + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --record /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-record --prefix /usr -l netpyne + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12 using python3.12 /usr/lib/python3.12/site-packages/netpyne/analysis/dipole.py:127: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/site-packages/netpyne/analysis/dipole.py:127: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:342: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:353: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:373: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:342: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:353: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:373: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/spikes_legacy.py:586: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/site-packages/netpyne/analysis/spikes_legacy.py:586: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/plotting/plotTimeSeries.py:592: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/plotting/plotTimeSeries.py:592: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/support/stackedBarGraph.py:189: SyntaxWarning: "is not" with 'str' literal. Did you mean "!="? /usr/lib/python3.12/site-packages/netpyne/support/stackedBarGraph.py:189: SyntaxWarning: "is not" with 'str' literal. Did you mean "!="? + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.uhJ7qI + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 + '[' '!' -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules -e '*optuna*' -e '*sbi*' -e '*batchtools*' Check import: netpyne Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: netpyne.analysis Check import: netpyne.analysis.csd Check import: netpyne.analysis.dipole Check import: netpyne.analysis.filter Check import: netpyne.analysis.info Check import: netpyne.analysis.interactive Check import: netpyne.analysis.lfp Check import: netpyne.analysis.lfp_orig Check import: netpyne.analysis.mapping Check import: netpyne.analysis.network Check import: netpyne.analysis.rxd Check import: netpyne.analysis.spikes Check import: netpyne.analysis.spikes_legacy Check import: netpyne.analysis.tools Check import: netpyne.analysis.traces Check import: netpyne.analysis.utils Check import: netpyne.analysis.wrapper Check import: netpyne.batch Check import: netpyne.batch.asd_parallel Check import: netpyne.batch.batch Check import: netpyne.batch.evol Check import: netpyne.batch.grid Check import: netpyne.batch.utils Check import: netpyne.cell Check import: netpyne.cell.NML2Cell Check import: netpyne.cell.NML2SpikeSource Check import: netpyne.cell.cell Check import: netpyne.cell.compartCell Check import: netpyne.cell.inputs Check import: netpyne.cell.pointCell Check import: netpyne.conversion Check import: netpyne.conversion.excel Check import: netpyne.conversion.neuromlFormat Check import: netpyne.conversion.neuronPyHoc Check import: netpyne.conversion.pythonScript Check import: netpyne.conversion.sonataImport Check import: netpyne.metadata Check import: netpyne.metadata.api Check import: netpyne.metadata.metadata Check import: netpyne.network Check import: netpyne.network.conn Check import: netpyne.network.modify Check import: netpyne.network.netrxd Check import: netpyne.network.network Check import: netpyne.network.pop Check import: netpyne.network.shape Check import: netpyne.network.stim Check import: netpyne.network.subconn Check import: netpyne.plotting Check import: netpyne.plotting.plotCSD Check import: netpyne.plotting.plotLFPLocations Check import: netpyne.plotting.plotLFPSpectrogram Check import: netpyne.plotting.plotRaster Check import: netpyne.plotting.plotShape Check import: netpyne.plotting.plotSpikeFreq Check import: netpyne.plotting.plotSpikeHist Check import: netpyne.plotting.plotTimeSeries Check import: netpyne.plotting.plotTimeSeriesPSD Check import: netpyne.plotting.plotter Check import: netpyne.sim Check import: netpyne.sim.gather Check import: netpyne.sim.load Check import: netpyne.sim.run Check import: netpyne.sim.save Check import: netpyne.sim.setup Check import: netpyne.sim.utils Check import: netpyne.sim.validator Check import: netpyne.sim.wrappers Check import: netpyne.specs Check import: netpyne.specs.dicts Check import: netpyne.specs.netParams Check import: netpyne.specs.simConfig Check import: netpyne.specs.utils Check import: netpyne.support Check import: netpyne.support.bsmart Check import: netpyne.support.filter Check import: netpyne.support.morlet Check import: netpyne.support.morphology Check import: netpyne.support.nml_reader Check import: netpyne.support.recxelectrode Check import: netpyne.support.scalebar Check import: netpyne.support.stackedBarGraph Check import: netpyne.tests Check import: netpyne.tests.checks Check import: netpyne.tests.tests Check import: netpyne.tests.validate_tests Note: SONATA import failed; import/export functions for SONATA will not be available. To use this feature install these Python packages: ['tables', 'pyneuroml', 'neuroml'] ERROR: popParams->'cellModel': No cellModel specified in population parameters..Values provided are: {'cellType': 'PYR', 'numCells': 50} + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages PYTHONDONTWRITEBYTECODE=1 'PYTEST_ADDOPTS= --ignore=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir' PYTEST_XDIST_AUTO_NUM_WORKERS=2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + pushd doc/source/code ~/build/BUILD/netpyne-1.0.7/doc/source/code ~/build/BUILD/netpyne-1.0.7 + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/doc/source/code Mod files: "mod/mod/A.mod" "mod/mod/AMPA.mod" "mod/mod/ElectSyn.mod" "mod/mod/GABAa.mod" "mod/mod/GradedSyn.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/NMDA.mod" "mod/mod/Nca.mod" "mod/mod/OFThpo.mod" "mod/mod/OFThresh.mod" "mod/mod/ar.mod" "mod/mod/cad.mod" "mod/mod/cadad.mod" "mod/mod/cal.mod" "mod/mod/cat.mod" "mod/mod/expsynstdp.mod" "mod/mod/iholmw.mod" "mod/mod/izhi2003a.mod" "mod/mod/izhi2003b.mod" "mod/mod/izhi2007a.mod" "mod/mod/izhi2007b.mod" "mod/mod/k2.mod" "mod/mod/ka.mod" "mod/mod/kacurrent.mod" "mod/mod/kahp.mod" "mod/mod/kc.mod" "mod/mod/kca.mod" "mod/mod/kdr.mod" "mod/mod/kdrcurrent.mod" "mod/mod/km.mod" "mod/mod/km2.mod" "mod/mod/kv.mod" "mod/mod/nacurrent.mod" "mod/mod/naf.mod" "mod/mod/nap.mod" "mod/mod/naz.mod" "mod/mod/vecevent.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/A.mod -> NMODL ../mod/AMPA.mod -> NMODL ../mod/ElectSyn.mod Translating A.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/A.c INCLUDEing ofc.inc Thread Safe Translating AMPA.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/AMPA.c INCLUDEing ../netcon.inc Thread Safe Translating ElectSyn.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ElectSyn.c -> NMODL ../mod/GABAa.mod Thread Safe -> NMODL ../mod/GradedSyn.mod -> NMODL ../mod/MyExp2SynBB.mod Translating GABAa.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/GABAa.c INCLUDEing ../netcon.inc Thread Safe Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/MyExp2SynBB.c Translating GradedSyn.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/GradedSyn.c -> NMODL ../mod/MyExp2SynNMDABB.mod Thread Safe Thread Safe -> NMODL ../mod/NMDA.mod -> NMODL ../mod/Nca.mod Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/MyExp2SynNMDABB.c Thread Safe Translating NMDA.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/NMDA.c INCLUDEing ../netcon.inc Thread Safe Translating Nca.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/Nca.c -> NMODL ../mod/OFThpo.mod -> NMODL ../mod/OFThresh.mod Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> NMODL ../mod/ar.mod Translating OFThpo.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/OFThpo.c Thread Safe -> NMODL ../mod/cad.mod Translating OFThresh.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/OFThresh.c Translating ar.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ar.c Thread Safe Thread Safe Translating cad.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cad.c Thread Safe -> NMODL ../mod/cadad.mod -> NMODL ../mod/cal.mod -> NMODL ../mod/cat.mod -> NMODL ../mod/expsynstdp.mod Translating cal.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cal.c Thread Safe Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cadad.c Thread Safe Translating cat.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cat.c Thread Safe -> NMODL ../mod/izhi2003a.mod -> NMODL ../mod/iholmw.mod Translating expsynstdp.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/expsynstdp.c -> NMODL ../mod/izhi2003b.mod Thread Safe Translating izhi2003a.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2003a.c Translating iholmw.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/iholmw.c INCLUDEing aux_fun.inc Thread Safe Thread Safe -> NMODL ../mod/izhi2007b.mod -> NMODL ../mod/izhi2007a.mod Translating izhi2003b.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2003b.c Thread Safe -> NMODL ../mod/k2.mod -> NMODL ../mod/ka.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe Translating izhi2007a.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2007a.c Translating k2.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/k2.c Translating ka.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ka.c Thread Safe Thread Safe Notice: VERBATIM blocks are not thread safe -> NMODL ../mod/kacurrent.mod -> NMODL ../mod/kahp.mod -> NMODL ../mod/kc.mod -> NMODL ../mod/kca.mod Translating kahp.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kahp.c Translating kc.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kc.c Translating kacurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kacurrent.c Thread Safe Translating kca.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kca.c Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Thread Safe Thread Safe -> NMODL ../mod/kdr.mod -> NMODL ../mod/kdrcurrent.mod -> NMODL ../mod/km.mod Translating kdr.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kdr.c Thread Safe Translating kdrcurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kdrcurrent.c -> NMODL ../mod/km2.mod Thread Safe -> NMODL ../mod/kv.mod -> NMODL ../mod/nacurrent.mod Translating km.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/km.c Thread Safe Translating kv.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kv.c Notice: Assignment to the GLOBAL variable, "ntau", is not thread safe Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Translating km2.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/km2.c -> NMODL ../mod/naf.mod Translating nacurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/nacurrent.c Thread Safe -> NMODL ../mod/nap.mod Thread Safe -> NMODL ../mod/naz.mod Translating naf.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/naf.c Thread Safe -> NMODL ../mod/vecevent.mod Translating nap.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/nap.c Translating naz.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/naz.c Thread Safe Notice: Assignment to the GLOBAL variable, "htau", is not thread safe Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "mtau", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> Compiling A.c -> Compiling AMPA.c -> Compiling ElectSyn.c Translating vecevent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/vecevent.c Thread Safe Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it only affects and is affected by discrete events. As such it is not located in a section and is not associated with an integrator -> Compiling GABAa.c -> Compiling GradedSyn.c -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling NMDA.c -> Compiling Nca.c -> Compiling OFThpo.c -> Compiling OFThresh.c -> Compiling ar.c -> Compiling cad.c -> Compiling cadad.c -> Compiling cal.c -> Compiling cat.c -> Compiling expsynstdp.c -> Compiling iholmw.c -> Compiling izhi2003a.c -> Compiling izhi2003b.c -> Compiling izhi2007a.c -> Compiling izhi2007b.c -> Compiling k2.c -> Compiling ka.c -> Compiling kacurrent.c -> Compiling kahp.c -> Compiling kc.c -> Compiling kca.c -> Compiling kdr.c -> Compiling kdrcurrent.c -> Compiling km.c -> Compiling km2.c -> Compiling kv.c -> Compiling nacurrent.c -> Compiling naf.c -> Compiling nap.c -> Compiling naz.c -> Compiling vecevent.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 tut2.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:30.412488 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 100%|##########| Creating synaptic connections for 20/20 presynaptic cells on node 0 (divergent connectivity) Number of connections on node 0: 240 Done; cell connection time = 0.03 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.63 s; real-time ratio: 1.58. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 280 (7.00 per cell) Spikes: 931 (23.27 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.63 s Saving output as tut2_data.json ... Finished saving! Done; saving time = 0.04 s. Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.63 s Total time = 1.37 s + /usr/bin/python3 tut3.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:33.268161 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 100%|##########| Creating synaptic connections for 20/20 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 203 Done; cell connection time = 0.02 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.55 s; real-time ratio: 1.80. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 243 (6.08 per cell) Spikes: 560 (14.00 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.55 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.58 s Total time = 1.18 s + /usr/bin/python3 tut4.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:35.924501 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 100%|##########| Creating synaptic connections for 20/20 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 33 Done; cell connection time = 0.01 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.35 s; real-time ratio: 2.83. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 73 (1.82 per cell) Spikes: 1186 (29.65 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.35 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.44 s Total time = 0.82 s + /usr/bin/python3 tut5.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:38.714670 Creating network of 6 cell populations on 1 hosts...: 0%| | Creating network of 6 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 300 Done; cell creation time = 0.04 s. Making connections... E->all: 100%|##########| Creating synaptic connections for 300/300 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 100%|##########| Creating synaptic connections for 150/150 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 6796 Done; cell connection time = 1.26 s. Adding stims... Number of stims on node 0: 300 Done; cell stims creation time = 0.04 s. Recording 0 traces of 0 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 10.90 s; real-time ratio: 0.09. Gathering data... Done; gather time = 0.22 s. Analyzing... Cells: 300 Connections: 7096 (23.65 per cell) Spikes: 4808 (16.03 Hz) Simulated time: 1.0 s; 1 workers Run time: 10.90 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Done; plotting time = 0.41 s Total time = 12.86 s + /usr/bin/python3 tut6.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:53.147016 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 48 Done; cell stims creation time = 0.01 s. Recording 2 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.31 s; real-time ratio: 3.18. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 16 (0.40 per cell) Spikes: 134 (3.35 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.31 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Done; plotting time = 0.37 s Total time = 0.70 s + /usr/bin/python3 tut7.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-01-08 14:17:55.354165 Creating network of 1 cell populations on 1 hosts...: 0%| | Creating network of 1 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 50 Done; cell creation time = 0.01 s. Making connections... hop->hop: 100%|##########| Creating synaptic connections for 50/50 postsynaptic cells on node 0 (all-to-all connectivity) Number of connections on node 0: 2450 Done; cell connection time = 0.27 s. Adding stims... Number of stims on node 0: 50 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 500.0 ms... Done; run time = 1.49 s; real-time ratio: 0.34. Gathering data... Done; gather time = 0.08 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 1261 (50.44 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.49 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 2.01 s Total time = 3.87 s Modfying connection parameters... Done; connections modification time = 0.01 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.69 s; real-time ratio: 0.30. Gathering data... Done; gather time = 0.07 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 583 (23.32 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.69 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 2.17 s Modfying cell parameters... Done; cells modification time = 0.00 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.74 s; real-time ratio: 0.29. Gathering data... Done; gather time = 0.07 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 332 (13.28 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.74 s Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell + popd ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/HHTut/src ~/build/BUILD/netpyne-1.0.7 + pushd examples/HHTut/src + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/HybridTut/src ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/HybridTut/src/ + nrnivmodl ../mod/ /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src Mod files: "../mod/../mod//izhi2007b.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../../mod//izhi2007b.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/M1/src ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/M1/src + nrnivmodl ../mod /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src Mod files: "../mod/../mod/izhi2007b.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../../mod/izhi2007b.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/PTcell/src ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/PTcell/src + nrnivmodl ../mod/ /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src Mod files: "../mod/../mod//HCN1.mod" "../mod/../mod//IC.mod" "../mod/../mod//IKsin.mod" "../mod/../mod//MyExp2SynBB.mod" "../mod/../mod//MyExp2SynNMDABB.mod" "../mod/../mod//ar_traub.mod" "../mod/../mod//cadad.mod" "../mod/../mod//cadyn.mod" "../mod/../mod//cagk.mod" "../mod/../mod//cal_mh.mod" "../mod/../mod//cal_mig.mod" "../mod/../mod//can_mig.mod" "../mod/../mod//canin.mod" "../mod/../mod//cat_mig.mod" "../mod/../mod//cat_traub.mod" "../mod/../mod//catcb.mod" "../mod/../mod//gabab.mod" "../mod/../mod//h_BS.mod" "../mod/../mod//h_harnett.mod" "../mod/../mod//h_kole.mod" "../mod/../mod//h_migliore.mod" "../mod/../mod//hin.mod" "../mod/../mod//ican_sidi.mod" "../mod/../mod//kBK.mod" "../mod/../mod//kap_BS.mod" "../mod/../mod//kapcb.mod" "../mod/../mod//kapin.mod" "../mod/../mod//kctin.mod" "../mod/../mod//kdmc_BS.mod" "../mod/../mod//kdr_BS.mod" "../mod/../mod//kdrin.mod" "../mod/../mod//nafx.mod" "../mod/../mod//nap_sidi.mod" "../mod/../mod//nax_BS.mod" "../mod/../mod//savedist.mod" "../mod/../mod//vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../../mod//HCN1.mod -> NMODL ../../mod//IC.mod -> NMODL ../../mod//IKsin.mod Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/HCN1.c Thread Safe Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/IKsin.c Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/IC.c Thread Safe Thread Safe -> NMODL ../../mod//MyExp2SynBB.mod -> NMODL ../../mod//MyExp2SynNMDABB.mod -> NMODL ../../mod//ar_traub.mod Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/MyExp2SynBB.c Thread Safe Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/MyExp2SynNMDABB.c Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/ar_traub.c INCLUDEing ghk.inc Warning: celsius undefined. (declared within VERBATIM?) -> NMODL ../../mod//cadad.mod Thread Safe Thread Safe -> NMODL ../../mod//cagk.mod -> NMODL ../../mod//cadyn.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cadad.c Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cadyn.c Thread Safe Thread Safe -> NMODL ../../mod//cal_mh.mod Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cagk.c -> NMODL ../../mod//cal_mig.mod Thread Safe Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cal_mh.c -> NMODL ../../mod//can_mig.mod Thread Safe -> NMODL ../../mod//canin.mod Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cal_mig.c Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/can_mig.c Thread Safe Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/canin.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../../mod//cat_mig.mod Thread Safe -> NMODL ../../mod//cat_traub.mod -> NMODL ../../mod//catcb.mod Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cat_mig.c Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cat_traub.c Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../../mod//gabab.mod -> NMODL ../../mod//h_BS.mod Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/catcb.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/gabab.c Notice: Assignment to the GLOBAL variable, "warn", is not thread safe -> NMODL ../../mod//h_harnett.mod -> NMODL ../../mod//h_kole.mod Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_BS.c Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_harnett.c Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_kole.c -> NMODL ../../mod//h_migliore.mod -> NMODL ../../mod//hin.mod Thread Safe Thread Safe -> NMODL ../../mod//ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_migliore.c Thread Safe -> NMODL ../../mod//kap_BS.mod -> NMODL ../../mod//kBK.mod Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/hin.c Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. Thread Safe Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/ican_sidi.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kap_BS.c -> NMODL ../../mod//kapcb.mod Thread Safe -> NMODL ../../mod//kapin.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kBK.c -> NMODL ../../mod//kctin.mod Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kapcb.c Thread Safe Thread Safe -> NMODL ../../mod//kdmc_BS.mod Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kctin.c NEURON's CVode method ignores conservation Thread Safe -> NMODL ../../mod//kdr_BS.mod Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kapin.c -> NMODL ../../mod//kdrin.mod Thread Safe Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdr_BS.c -> NMODL ../../mod//nafx.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdmc_BS.c Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdrin.c Thread Safe Thread Safe Thread Safe -> NMODL ../../mod//nap_sidi.mod -> NMODL ../../mod//nax_BS.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nafx.c Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Thread Safe -> NMODL ../../mod//vecstim.mod -> NMODL ../../mod//savedist.mod Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nap_sidi.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/savedist.c Thread Safe Thread Safe Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/vecstim.c Thread Safe -> Compiling IC.c -> Compiling HCN1.c -> Compiling IKsin.c -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling ican_sidi.c -> Compiling hin.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/init.py", line 17, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/index.npjson' + true + popd ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/LFPrecording ~/build/BUILD/netpyne-1.0.7 + pushd examples/LFPrecording + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording Mod files: "mod/mod/IC.mod" "mod/mod/cadad.mod" "mod/mod/cagk.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/cat_mig.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/IC.mod -> NMODL ../mod/cadad.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/IC.c -> NMODL ../mod/cagk.mod Thread Safe -> NMODL ../mod/cal_mig.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cadad.c Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cagk.c Thread Safe Thread Safe Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cal_mig.c -> NMODL ../mod/can_mig.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/cat_mig.mod -> NMODL ../mod/h_kole.mod Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/can_mig.c Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cat_mig.c Thread Safe Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/h_kole.c Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe Thread Safe -> NMODL ../mod/h_migliore.mod -> NMODL ../mod/ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/h_migliore.c Thread Safe -> NMODL ../mod/kBK.mod -> NMODL ../mod/kap_BS.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kap_BS.c -> NMODL ../mod/kdmc_BS.mod Thread Safe -> NMODL ../mod/kdr_BS.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kdmc_BS.c Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kdr_BS.c -> NMODL ../mod/nax_BS.mod Thread Safe Thread Safe -> NMODL ../mod/savedist.mod -> Compiling IC.c -> Compiling cadad.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/savedist.c Thread Safe -> Compiling cagk.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling cat_mig.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling nax_BS.c -> Compiling savedist.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 cell_lfp.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/cell_lfp.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/saving ~/build/BUILD/netpyne-1.0.7 + pushd examples/saving + /usr/bin/python3 init.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/saving/init.py': [Errno 2] No such file or directory + true ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/rxd_buffering ~/build/BUILD/netpyne-1.0.7 + popd + pushd examples/rxd_buffering + /usr/bin/python3 buffering.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/rxd_buffering/buffering.py': [Errno 2] No such file or directory ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/rxd_net ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/rxd_net/ + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/IC.mod -> NMODL ../mod/IKsin.mod -> NMODL ../mod/HCN1.mod Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/IKsin.c Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/IC.c Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/HCN1.c Thread Safe Thread Safe Thread Safe -> NMODL ../mod/ar_traub.mod -> NMODL ../mod/cadyn.mod -> NMODL ../mod/cadad.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cadad.c Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cadyn.c Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/ar_traub.c Thread Safe Thread Safe Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mh.mod -> NMODL ../mod/cal_mig.mod Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cal_mh.c Thread Safe Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cal_mig.c Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cagk.c -> NMODL ../mod/can_mig.mod Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Thread Safe Thread Safe -> NMODL ../mod/canin.mod Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/can_mig.c -> NMODL ../mod/cat_mig.mod Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/canin.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Thread Safe Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cat_mig.c -> NMODL ../mod/cat_traub.mod -> NMODL ../mod/catcb.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/gabab.mod -> NMODL ../mod/h_BS.mod Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cat_traub.c Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/catcb.c Thread Safe Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe -> NMODL ../mod/h_harnett.mod Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/gabab.c Notice: Assignment to the GLOBAL variable, "warn", is not thread safe -> NMODL ../mod/h_kole.mod Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_harnett.c Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_BS.c Thread Safe Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_kole.c Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/h_migliore.mod Thread Safe -> NMODL ../mod/ican_sidi.mod -> NMODL ../mod/hin.mod Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/hin.c Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_migliore.c -> NMODL ../mod/kBK.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/ican_sidi.c Thread Safe Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. -> NMODL ../mod/kap_BS.mod Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kapcb.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kBK.c -> NMODL ../mod/kapin.mod Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kap_BS.c Thread Safe Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kapcb.c -> NMODL ../mod/kctin.mod Thread Safe Thread Safe Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kapin.c -> NMODL ../mod/kdmc_BS.mod Thread Safe Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kctin.c -> NMODL ../mod/kdr_BS.mod NEURON's CVode method ignores conservation -> NMODL ../mod/kdrin.mod Thread Safe Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdmc_BS.c -> NMODL ../mod/nafx.mod Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdrin.c Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdr_BS.c Thread Safe Thread Safe Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nafx.c Thread Safe Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. -> NMODL ../mod/savedist.mod -> NMODL ../mod/nap_sidi.mod -> NMODL ../mod/nax_BS.mod -> NMODL ../mod/vecstim.mod Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nap_sidi.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/savedist.c Thread Safe Thread Safe Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/vecstim.c -> Compiling HCN1.c -> Compiling IC.c Thread Safe -> Compiling IKsin.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nax_BS.c -> Compiling nap_sidi.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 src/init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/index.npjson ... Loading simConfig: src/cfg.py ... Loading netParams: src/netParams.py ... Start time: 2025-01-08 14:18:18.240190 Creating network of 6 cell populations on 1 hosts...: 0%| | Creating network of 6 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 60 Done; cell creation time = 0.07 s. Making connections... E->all: 100%|##########| Creating synaptic connections for 60/60 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 100%|##########| Creating synaptic connections for 30/30 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 309 Done; cell connection time = 0.06 s. Adding stims... Number of stims on node 0: 60 Done; cell stims creation time = 0.01 s. Adding RxD... Created Region cyt Created Region er Created Region cyt_er_membrane Created Extracellular Region ecs Created Species ca Created Species ip3 Created State ip3r_gate_state Created MultiCompartmentReaction serca Created MultiCompartmentReaction leak Created MultiCompartmentReaction ip3r Created Rate ip3rg Done; RxD setup time = 0.02 s. Recording 4 traces of 4 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 57.65 s; real-time ratio: 0.02. Gathering data... Done; gather time = 0.06 s. Analyzing... Cells: 60 Connections: 369 (6.15 per cell) Spikes: 937 (15.62 Hz) Simulated time: 1.0 s; 1 workers Run time: 57.65 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) ~/build/BUILD/netpyne-1.0.7 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-netpyne-1.0.7-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.zm3Vwu + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + DOCDIR=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.7/README.md /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.7/CHANGES.md /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-netpyne = 1.0.7-3.fc40 python3-netpyne = 1.0.7-3.fc40 python3.12-netpyne = 1.0.7-3.fc40 python3.12dist(netpyne) = 1.0.7 python3dist(netpyne) = 1.0.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(bokeh) python3.12dist(lfpykit) python3.12dist(matplotlib) python3.12dist(matplotlib-scalebar) python3.12dist(numpy) python3.12dist(pandas) python3.12dist(schema) python3.12dist(scipy) python3.12dist(tqdm) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.src.rpm Wrote: /builddir/build/RPMS/python3-netpyne-1.0.7-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.FwoEjn + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Q2kO70 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/netpyne-1.0.7-SPECPARTS + rm -rf netpyne-1.0.7 netpyne-1.0.7.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-netpyne-1.0.7-3.fc40.src.rpm Finish: build phase for python-netpyne-1.0.7-3.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1736345771.991236/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-netpyne-1.0.7-3.fc40.src.rpm) Config(child) 2 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-netpyne", "epoch": null, "version": "1.0.7", "release": "3.fc40", "arch": "src" }, { "name": "python3-netpyne", "epoch": null, "version": "1.0.7", "release": "3.fc40", "arch": "noarch" } ] } RPMResults finished