Warning: Permanently added '54.234.222.218' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8488827-fedora-40-x86_64 --chroot fedora-40-x86_64 Version: 1.2 PID: 23105 Logging PID: 23106 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8488827, 'buildroot_pkgs': [], 'chroot': 'fedora-40-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '72fabcb1da3702eb8be4f8763916192946febb4b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '8.18.2-4', 'project_dirname': 'jinja2-3.1.5-f40:custom:isolated', 'project_name': 'jinja2-3.1.5-f40', 'project_owner': 'churchyard', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/jinja2-3.1.5-f40/fedora-40-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f40-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch'}], 'sandbox': 'churchyard/jinja2-3.1.5-f40--churchyard', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'churchyard', 'tags': [], 'task_id': '8488827-fedora-40-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/snakemake /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f40:custom:isolated/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake'... Running: git checkout 72fabcb1da3702eb8be4f8763916192946febb4b -- cmd: ['git', 'checkout', '72fabcb1da3702eb8be4f8763916192946febb4b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake rc: 0 stdout: stderr: Note: switching to '72fabcb1da3702eb8be4f8763916192946febb4b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 72fabcb automatic import of snakemake Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-8.18.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-8.18.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/jinja2-3.1.5-f40:custom:isolated/snakemake/snakemake-8.18.2.tar.gz/md5/3d16041877d242096026870afc84978e/snakemake-8.18.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8464k 100 8464k 0 0 23.3M 0 --:--:-- --:--:-- --:--:-- 23.4M INFO: Reading stdout from command: md5sum snakemake-8.18.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736364211.458127 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736364211.458127 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake/snakemake.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736364211.458127/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Tagging container image as mock-bootstrap-a31412ff-d83d-4cf6-b57e-aabf75d09e63 INFO: Checking that cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 image matches host's architecture INFO: Copy content of container cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 to /var/lib/mock/fedora-40-x86_64-bootstrap-1736364211.458127/root INFO: mounting cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 with podman image mount INFO: image cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 as /var/lib/containers/storage/overlay/ea6459704420479040f5ae1ac423e605b3307fe5ce36d12d2981f2a18aad83a5/merged INFO: umounting image cccf8d63d11d219c285ac6fa89b3c3850e598379790f46816ab961e21d7c4722 (/var/lib/containers/storage/overlay/ea6459704420479040f5ae1ac423e605b3307fe5ce36d12d2981f2a18aad83a5/merged) with podman image umount INFO: Removing image mock-bootstrap-a31412ff-d83d-4cf6-b57e-aabf75d09e63 INFO: Using 'dnf4' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf4 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 52 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 150 MB/s | 14 MB 00:00 fedora 33 MB/s | 20 MB 00:00 updates 42 MB/s | 12 MB 00:00 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 690 k dnf5-plugins x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 351 k Installing dependencies: fmt x86_64 10.2.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 125 k libdnf5 x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 M libdnf5-cli x86_64 5.1.17-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 231 k sdbus-cpp x86_64 1.4.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 110 k Transaction Summary ============================================================================================================== Install 6 Packages Total download size: 2.4 M Installed size: 6.9 M Downloading Packages: (1/6): dnf5-5.1.17-3.fc40.x86_64.rpm 26 MB/s | 690 kB 00:00 (2/6): fmt-10.2.1-5.fc40.x86_64.rpm 4.4 MB/s | 125 kB 00:00 (3/6): libdnf5-cli-5.1.17-3.fc40.x86_64.rpm 36 MB/s | 231 kB 00:00 (4/6): dnf5-plugins-5.1.17-3.fc40.x86_64.rpm 9.6 MB/s | 351 kB 00:00 (5/6): libdnf5-5.1.17-3.fc40.x86_64.rpm 90 MB/s | 1.0 MB 00:00 (6/6): sdbus-cpp-1.4.0-2.fc40.x86_64.rpm 14 MB/s | 110 kB 00:00 -------------------------------------------------------------------------------- Total 54 MB/s | 2.4 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-5.fc40.x86_64 1/6 Installing : libdnf5-5.1.17-3.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.17-3.fc40.x86_64 3/6 Installing : sdbus-cpp-1.4.0-2.fc40.x86_64 4/6 Installing : dnf5-5.1.17-3.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.17-3.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.17-3.fc40.x86_64 6/6 Installed: dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 fmt-10.2.1-5.fc40.x86_64 libdnf5-5.1.17-3.fc40.x86_64 libdnf5-cli-5.1.17-3.fc40.x86_64 sdbus-cpp-1.4.0-2.fc40.x86_64 Complete! INFO: Switching package manager from dnf4 to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1736364211.458127/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 python3-dnf-4.22.0-1.fc40.noarch yum-4.22.0-1.fc40.noarch dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 110.8 KiB/s | 29.5 KiB | 00m00s fedora 100% | 275.8 KiB/s | 30.1 KiB | 00m00s Copr repository 100% | 137.7 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 239.4 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 91.7 KiB coreutils x86_64 9.4-9.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 5.8 MiB cpio x86_64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.1 MiB diffutils x86_64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.6 MiB fedora-release-common noarch 40-40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 19.2 KiB findutils x86_64 1:4.9.0-9.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.5 MiB gawk x86_64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.39-33.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 0.0 B grep x86_64 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 MiB gzip x86_64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 385.0 KiB info x86_64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 357.8 KiB patch x86_64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 262.8 KiB redhat-rpm-config noarch 288-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 173.7 KiB sed x86_64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 861.5 KiB shadow-utils x86_64 2:4.15.1-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.1 MiB tar x86_64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.9 MiB unzip x86_64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 382.8 KiB util-linux x86_64 2.40.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 3.7 MiB which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.2 KiB xz x86_64 1:5.4.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.0 MiB Installing dependencies: alternatives x86_64 1.27-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 66.3 KiB ansible-srpm-macros noarch 1-16.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 35.7 KiB audit-libs x86_64 4.0.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 327.4 KiB authselect x86_64 1.5.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 153.6 KiB authselect-libs x86_64 1.5.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 818.2 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 0.0 B binutils x86_64 2.41-38.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 26.4 MiB binutils-gold x86_64 2.41-38.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.4 MiB coreutils-common x86_64 9.4-9.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 11.4 MiB cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 238.9 KiB crypto-policies noarch 20241011-1.git5930b9a.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 158.0 KiB curl x86_64 8.6.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 738.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.3 MiB debugedit x86_64 5.0-18.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 199.3 KiB dwz x86_64 0.15-8.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 294.9 KiB ed x86_64 1.20.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 40.1 KiB elfutils x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.7 MiB elfutils-debuginfod-client x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 80.2 KiB elfutils-default-yama-scope noarch 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.2 MiB elfutils-libs x86_64 0.192-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 670.3 KiB fedora-gpg-keys noarch 40-2 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http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 709.9 KiB rpm-sequoia x86_64 1.7.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.4 MiB systemd-libs x86_64 255.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.9 MiB util-linux-core x86_64 2.40.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 90.2 KiB xz-libs x86_64 1:5.4.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 209.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.1 KiB zip x86_64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. 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gzip-0:1.13-1.fc40 100% | 127.1 MiB/s | 390.6 KiB | 00m00s [ 76/155] Installing authselect-libs-0: 100% | 162.7 MiB/s | 833.2 KiB | 00m00s [ 77/155] Installing authselect-0:1.5.0 100% | 77.1 MiB/s | 157.9 KiB | 00m00s [ 78/155] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s [ 79/155] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB | 00m00s [ 80/155] Installing rpm-sequoia-0:1.7. 100% | 342.0 MiB/s | 2.4 MiB | 00m00s [ 81/155] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.4 KiB | 00m00s [ 82/155] Installing util-linux-core-0: 100% | 247.6 MiB/s | 1.5 MiB | 00m00s [ 83/155] Installing tar-2:1.35-3.fc40. 100% | 327.8 MiB/s | 3.0 MiB | 00m00s [ 84/155] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB | 00m00s [ 85/155] Installing shadow-utils-2:4.1 100% | 149.1 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 [ 86/155] Installing libutempter-0:1.2. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 87/155] Installing zip-0:3.0-40.fc40. 100% | 230.2 MiB/s | 707.1 KiB | 00m00s [ 88/155] Installing gdbm-1:1.23-6.fc40 100% | 227.4 MiB/s | 465.8 KiB | 00m00s [ 89/155] Installing cyrus-sasl-lib-0:2 100% | 326.2 MiB/s | 2.3 MiB | 00m00s [ 90/155] Installing zstd-0:1.5.6-1.fc4 100% | 419.0 MiB/s | 1.7 MiB | 00m00s [ 91/155] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB | 00m00s [ 92/155] Installing bzip2-0:1.0.8-18.f 100% | 93.9 MiB/s | 96.2 KiB | 00m00s [ 93/155] Installing libxml2-0:2.12.9-1 100% | 342.4 MiB/s | 1.7 MiB | 00m00s [ 94/155] Installing libarchive-0:3.7.2 100% | 301.0 MiB/s | 924.5 KiB | 00m00s [ 95/155] Installing sqlite-libs-0:3.45 100% | 350.3 MiB/s | 1.4 MiB | 00m00s [ 96/155] Installing rpm-libs-0:4.19.1. 100% | 347.4 MiB/s | 711.4 KiB | 00m00s [ 97/155] Installing ed-0:1.20.2-1.fc40 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 98/155] Installing patch-0:2.7.6-24.f 100% | 258.1 MiB/s | 264.3 KiB | 00m00s [ 99/155] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.192-7.fc40.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.192-7.fc40.noar [100/155] Installing cpio-0:2.15-1.fc40 100% | 219.9 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-5 100% | 317.2 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libpkgconf-0:2.1.1 100% | 0.0 B/s | 75.3 KiB | 00m00s [103/155] Installing pkgconf-0:2.1.1-2. 100% | 83.4 MiB/s | 85.4 KiB | 00m00s [104/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.8 KiB | 00m00s [105/155] Installing libverto-0:0.3.2-8 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [106/155] Installing krb5-libs-0:1.21.3 100% | 329.6 MiB/s | 2.3 MiB | 00m00s [107/155] Installing libtirpc-0:1.3.6-1 100% | 199.7 MiB/s | 204.5 KiB | 00m00s [108/155] Installing libnsl2-0:2.0.1-1. 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [109/155] Installing pam-0:1.6.1-5.fc40 100% | 165.4 MiB/s | 1.8 MiB | 00m00s [110/155] Installing libssh-0:0.10.6-5. 100% | 249.7 MiB/s | 511.4 KiB | 00m00s [111/155] Installing libgomp-0:14.2.1-3 100% | 256.3 MiB/s | 525.0 KiB | 00m00s [112/155] Installing json-c-0:0.17-3.fc 100% | 0.0 B/s | 83.6 KiB | 00m00s [113/155] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 91.6 KiB | 00m00s [114/155] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB | 00m00s [115/155] Installing libbrotli-0:1.1.0- 100% | 270.8 MiB/s | 831.8 KiB | 00m00s [116/155] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 67.3 KiB | 00m00s [117/155] Installing openldap-0:2.6.8-1 100% | 314.5 MiB/s | 644.0 KiB | 00m00s [118/155] Installing libcurl-0:8.6.0-10 100% | 379.8 MiB/s | 777.9 KiB | 00m00s [119/155] Installing elfutils-debuginfo 100% | 80.4 MiB/s | 82.4 KiB | 00m00s [120/155] Installing elfutils-libs-0:0. 100% | 328.2 MiB/s | 672.2 KiB | 00m00s [121/155] Installing binutils-gold-0:2. 100% | 170.6 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-38.fc40.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.41-38.fc40.x86_64 [122/155] Installing binutils-0:2.41-38 100% | 362.7 MiB/s | 26.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-38.fc40.x86_64 >>> Stop post-install scriptlet: binutils-0:2.41-38.fc40.x86_64 [123/155] Installing elfutils-0:0.192-7 100% | 332.5 MiB/s | 2.7 MiB | 00m00s [124/155] Installing gdb-minimal-0:15.2 100% | 393.7 MiB/s | 13.0 MiB | 00m00s [125/155] Installing debugedit-0:5.0-18 100% | 197.3 MiB/s | 202.0 KiB | 00m00s [126/155] Installing rpm-build-libs-0:4 100% | 194.5 MiB/s | 199.2 KiB | 00m00s [127/155] Installing curl-0:8.6.0-10.fc 100% | 65.8 MiB/s | 740.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [128/155] Installing rpm-0:4.19.1.1-1.f 100% | 171.2 MiB/s | 2.4 MiB | 00m00s [129/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [130/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [131/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [132/155] Installing pkgconf-m4-0:2.1.1 100% | 0.0 B/s | 14.3 KiB | 00m00s [133/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [134/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [135/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [136/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 384.0 B | 00m00s [137/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [138/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [139/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [140/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [141/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [142/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [143/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [144/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [145/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [147/155] Installing python-srpm-macros 100% | 0.0 B/s | 51.8 KiB | 00m00s [148/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 56.5 KiB | 00m00s [149/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 61.6 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 93.7 MiB/s | 191.9 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 88.8 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [153/155] Installing util-linux-0:2.40. 100% | 156.2 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 419.4 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0 >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.27-1.fc40.x86_64 ansible-srpm-macros-1-16.fc40.noarch audit-libs-4.0.2-1.fc40.x86_64 authselect-1.5.0-6.fc40.x86_64 authselect-libs-1.5.0-6.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-38.fc40.x86_64 binutils-gold-2.41-38.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc40.noarch coreutils-9.4-9.fc40.x86_64 coreutils-common-9.4-9.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20241011-1.git5930b9a.fc40.noarch curl-8.6.0-10.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-18.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-8.fc40.x86_64 ed-1.20.2-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.192-7.fc40.x86_64 elfutils-debuginfod-client-0.192-7.fc40.x86_64 elfutils-default-yama-scope-0.192-7.fc40.noarch elfutils-libelf-0.192-7.fc40.x86_64 elfutils-libs-0.192-7.fc40.x86_64 fedora-gpg-keys-40-2.noarch fedora-release-40-40.noarch fedora-release-common-40-40.noarch fedora-release-identity-basic-40-40.noarch fedora-repos-40-2.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-9.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.4.0-1.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-15.2-3.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc40.noarch glibc-2.39-33.fc40.x86_64 glibc-common-2.39-33.fc40.x86_64 glibc-gconv-extra-2.39-33.fc40.x86_64 glibc-minimal-langpack-2.39-33.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 json-c-0.17-3.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-2.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-7.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.2-1.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-10.fc40.x86_64 libeconf-0.6.2-2.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40.2-1.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.2.1-3.fc40.x86_64 libgomp-14.2.1-3.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.2-1.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-2.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.7-5.fc40.x86_64 libsemanage-3.7-2.fc40.x86_64 libsepol-3.7-2.fc40.x86_64 libsmartcols-2.40.2-1.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.2.1-3.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.6-1.rc3.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40.2-1.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.37-4.fc40.x86_64 libxml2-2.12.9-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.8-1.fc40.x86_64 openssl-libs-3.2.2-3.fc40.x86_64 p11-kit-0.25.5-1.fc40.x86_64 p11-kit-trust-0.25.5-1.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-5.fc40.x86_64 pam-libs-1.6.1-5.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc40.x86_64 pcre2-syntax-10.44-1.fc40.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-2.fc40.x86_64 pkgconf-m4-2.1.1-2.fc40.noarch pkgconf-pkg-config-2.1.1-2.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.16.3-1.fc40.noarch python-srpm-macros-3.12-8.fc40.noarch qt5-srpm-macros-5.15.15-1.fc40.noarch qt6-srpm-macros-6.7.2-2.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 rust-srpm-macros-26.3-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-4.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.15-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.2-1.fc40.x86_64 util-linux-core-2.40.2-1.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.3-1.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1736364211.458127/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-r_qs6f48/snakemake/snakemake.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-8.18.2-4.fc40.src.rpm) Config(fedora-40-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736364211.458127/root. INFO: reusing tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1736364211.458127/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1736364211.458127/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-3.fc40.x86_64 python3-dnf-4.22.0-1.fc40.noarch yum-4.22.0-1.fc40.noarch dnf5-5.1.17-3.fc40.x86_64 dnf5-plugins-5.1.17-3.fc40.x86_64 Finish: chroot init Start: build phase for snakemake-8.18.2-4.fc40.src.rpm Start: build setup for snakemake-8.18.2-4.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.src.rpm Updating and loading repositories: updates 100% | 249.8 KiB/s | 29.5 KiB | 00m00s fedora 100% | 969.6 KiB/s | 30.1 KiB | 00m00s Copr repository 100% | 126.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 239.4 KiB/s | 3.8 KiB | 00m00s Repositories loaded. 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20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-20.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 390.8 KiB xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 78.4 KiB yajl x86_64 2.1.0-23.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 90.6 KiB Transaction Summary: Installing: 279 packages Total size of inbound packages is 191 MiB. Need to download 113 MiB. After this operation 852 MiB will be used (install 852 MiB, remove 0 B). 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Finish: build setup for snakemake-8.18.2-4.fc40.src.rpm Start: rpmbuild snakemake-8.18.2-4.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TyquaI + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-8.18.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-8.18.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-8.18.2 + rm -rf /builddir/build/BUILD/snakemake-8.18.2-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.18.2-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3138.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') 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recursedown('./tests/test_scatter_gather/expected-results/gathered') recursedown('./tests/test_scatter_gather/expected-results/splitted') recursedown('./tests/test_scatter_gather_multiple_processes') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b') recursedown('./tests/test_scheduler_sequential_all_cores') recursedown('./tests/test_scheduler_sequential_all_cores/expected-results') recursedown('./tests/test_script') recursedown('./tests/test_script/envs') recursedown('./tests/test_script/expected-results') recursedown('./tests/test_script/scripts') recursedown('./tests/test_script_pre_py39') recursedown('./tests/test_script_pre_py39/expected-results') recursedown('./tests/test_script_py') 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recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_storage') recursedown('./tests/test_storage/expected-results') recursedown('./tests/test_storage_cleanup_local') recursedown('./tests/test_storage_cleanup_local/expected-results') recursedown('./tests/test_storage_cleanup_local/expected-results/fs-storage') recursedown('./tests/test_storage_localrule') recursedown('./tests/test_storage_localrule/expected-results') recursedown('./tests/test_storage_localrule/expected-results/fs-storage') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') 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recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_update_flag') recursedown('./tests/test_update_flag/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') ./setup.py: no change ./versioneer.py: no change ./.github/workflows/scripts/sacct-proxy.py: updating ./apidocs/conf.py: updating ./docs/conf.py: updating ./examples/hello-world/scripts/plot-hist.py: no change ./snakemake/__init__.py: no change ./snakemake/__main__.py: no change ./snakemake/_version.py: no change ./snakemake/api.py: no change ./snakemake/benchmark.py: no change ./snakemake/checkpoints.py: no change ./snakemake/cli.py: no change ./snakemake/cwl.py: no change ./snakemake/dag.py: no change ./snakemake/decorators.py: no change ./snakemake/exceptions.py: no change ./snakemake/gui.py: no change ./snakemake/io.py: no change ./snakemake/ioflags.py: no change ./snakemake/ioutils.py: no change ./snakemake/jobs.py: no change ./snakemake/logging.py: 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change ./tests/test_tibanna/scripts/step2.py: no change recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md 'misc/nano/README.md' -> 'README-nano.md' + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md 'misc/vim/README.md' -> 'README-vim.md' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.buKHOV + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires -x reports,messaging Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.0.3) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 950.8 KiB/s | 29.5 KiB | 00m00s fedora 100% | 910.9 KiB/s | 30.1 KiB | 00m00s Copr repository 100% | 126.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 225.4 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-1.fc40.x86_64" is already installed. Package "graphviz-9.0.0-11.fc40.x86_64" is already installed. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python-unversioned-command-3.12.8-2.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-boto3-1.35.92-1.fc40.noarch" is already installed. Package "python3-flask-1:3.0.3-4.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-pandas-2.2.1-1.fc40.x86_64" is already installed. Package "python3-pytest-7.4.3-3.fc40.noarch" is already installed. Package "python3-pytest-mock-3.12.0-4.fc40.noarch" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-5.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc40.noarch" is already installed. Package "strace-6.12-1.fc40.x86_64" is already installed. Package "stress-1.0.7-4.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.984-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 23.3.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 14.2 MiB python3-wheel noarch 1:0.41.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 507.1 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 0 B. After this operation 15 MiB will be used (install 15 MiB, remove 0 B). [1/2] python3-pip-0:23.3.2-2.fc40.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/2] python3-wheel-1:0.41.2-3.fc40.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [1/4] Verify package files 100% | 200.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 64.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.41.2 100% | 85.6 MiB/s | 526.1 KiB | 00m00s [4/4] Installing python3-pip-0:23.3.2-2 100% | 128.4 MiB/s | 14.5 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: man-db-0:2.12.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: man-db-0:2.12.0-6.fc40.x86_64 Warning: skipped PGP checks for 2 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.uFcVzI + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires -x reports,messaging Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.0.3) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: appdirs Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: immutables Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: docutils Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.5) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp <2.10,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp <2.10,>=2.3.1 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pyyaml Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open <8.0,>=4.0 Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.3.3) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.4) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort <2.0,>=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.17.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: dpath <3.0.0,>=2.1.6 Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: conda-inject <2.0,>=1.3.1 Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slack-sdk ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pygments ; extra == 'reports' + cat /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 102.0 KiB/s | 29.5 KiB | 00m00s fedora 100% | 259.1 KiB/s | 30.1 KiB | 00m00s Copr repository 100% | 89.1 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 141.9 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-1.fc40.x86_64" is already installed. Package "graphviz-9.0.0-11.fc40.x86_64" is already installed. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python-unversioned-command-3.12.8-2.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-boto3-1.35.92-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-3.fc40.noarch" is already installed. Package "python3-flask-1:3.0.3-4.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-pandas-2.2.1-1.fc40.x86_64" is already installed. Package "python3-pip-23.3.2-2.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-3.fc40.noarch" is already installed. Package "python3-pytest-mock-3.12.0-4.fc40.noarch" is already installed. Package "python3-reretry-0.11.8-8.fc40.noarch" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-5.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc40.noarch" is already installed. Package "python3-throttler-1.2.2-9.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed. Package "python3-wrapt-1.17.0-1.fc40.x86_64" is already installed. Package "strace-6.12-1.fc40.x86_64" is already installed. Package "stress-1.0.7-4.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.984-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-GitPython noarch 3.1.40-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.7 MiB python3-appdirs noarch 1.4.4-13.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 69.0 KiB python3-conda-inject noarch 1.3.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 23.5 KiB python3-connection_pool noarch 0.0.3-11.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 21.1 KiB python3-datrie x86_64 0.8.2-25.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 444.8 KiB python3-docutils noarch 0.20.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 4.8 MiB python3-dpath noarch 2.1.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 92.7 KiB python3-humanfriendly noarch 10.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 549.7 KiB python3-immutables x86_64 0.20-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 184.4 KiB python3-jsonschema noarch 4.19.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 851.4 KiB python3-nbformat noarch 5.9.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 556.3 KiB python3-psutil x86_64 5.9.8-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.4 MiB python3-pulp noarch 2.9.0-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.0 MiB python3-pygments noarch 2.17.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 10.3 MiB python3-pyyaml x86_64 6.0.1-14.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 786.4 KiB python3-slackclient noarch 3.34.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 3.0 MiB python3-smart_open noarch 7.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 499.0 KiB python3-snakemake-interface-report-plugins noarch 1.0.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 30.6 KiB python3-stopit noarch 1.1.2-10.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 65.1 KiB python3-tabulate noarch 0.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 343.7 KiB python3-toposort noarch 1.10-10.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 28.5 KiB python3-yte noarch 1.5.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 61.5 KiB Installing dependencies: git-core x86_64 2.47.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 22.5 MiB libcbor x86_64 0.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 73.9 KiB libedit x86_64 3.1-54.20250104cvs.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 244.2 KiB libfido2 x86_64 1.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 237.8 KiB libyaml x86_64 0.2.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 130.4 KiB openssh x86_64 9.6p1-1.fc40.4 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 1.8 MiB openssh-clients x86_64 9.6p1-1.fc40.4 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 2.6 MiB python3-attrs noarch 23.2.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 379.5 KiB python3-boto noarch 2.49.0-21.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 9.8 MiB python3-fastjsonschema noarch 2.18.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 188.3 KiB python3-gitdb noarch 4.0.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 503.2 KiB python3-jsonschema-specifications noarch 2023.11.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 45.8 KiB python3-jupyter-core noarch 5.1.0-7.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 505.8 KiB python3-plac noarch 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 227.1 KiB python3-referencing noarch 0.31.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 313.3 KiB python3-rpds-py x86_64 0.18.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 693.6 KiB python3-smmap noarch 5.0.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 198.2 KiB python3-traitlets noarch 5.14.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 964.4 KiB python3-zombie-imp noarch 0.0.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_f40_build_latest_basearch 58.0 KiB Transaction Summary: Installing: 41 packages Total size of inbound packages is 15 MiB. Need to download 11 MiB. After this operation 68 MiB will be used (install 68 MiB, remove 0 B). [ 1/41] python3-docutils-0:0.20.1-3.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/41] python3-pygments-0:2.17.2-3.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/41] libyaml-0:0.2.5-14.fc40.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/41] libedit-0:3.1-54.20250104cvs.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/41] python3-conda-inject-0:1.3.2-1. 100% | 512.5 KiB/s | 18.4 KiB | 00m00s [ 6/41] python3-pulp-0:2.9.0-7.fc40.noa 100% | 4.5 MiB/s | 230.0 KiB | 00m00s [ 7/41] python3-dpath-0:2.1.6-1.fc40.no 100% | 612.4 KiB/s | 36.1 KiB | 00m00s [ 8/41] python3-smart_open-0:7.1.0-1.fc 100% | 3.3 MiB/s | 115.8 KiB | 00m00s [ 9/41] python3-toposort-0:1.10-10.fc40 100% | 873.9 KiB/s | 20.1 KiB | 00m00s [10/41] python3-snakemake-interface-rep 100% | 595.6 KiB/s | 20.8 KiB | 00m00s [11/41] python3-appdirs-0:1.4.4-13.fc40 100% | 7.5 MiB/s | 23.0 KiB | 00m00s [12/41] python3-connection_pool-0:0.0.3 100% | 1.4 MiB/s | 16.7 KiB | 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MiB/s | 1.6 MiB | 00m00s [26/41] python3-slackclient-0:3.34.0-1. 100% | 9.7 MiB/s | 495.7 KiB | 00m00s [27/41] python3-traitlets-0:5.14.1-1.fc 100% | 31.9 MiB/s | 196.0 KiB | 00m00s [28/41] python3-fastjsonschema-0:2.18.0 100% | 13.8 MiB/s | 56.5 KiB | 00m00s [29/41] python3-jupyter-core-0:5.1.0-7. 100% | 24.3 MiB/s | 124.2 KiB | 00m00s [30/41] python3-rpds-py-0:0.18.1-1.fc40 100% | 36.0 MiB/s | 294.8 KiB | 00m00s [31/41] python3-attrs-0:23.2.0-4.fc40.n 100% | 21.7 MiB/s | 111.0 KiB | 00m00s [32/41] python3-jsonschema-specificatio 100% | 5.1 MiB/s | 21.0 KiB | 00m00s [33/41] python3-referencing-0:0.31.1-3. 100% | 18.0 MiB/s | 73.7 KiB | 00m00s [34/41] python3-zombie-imp-0:0.0.2-5.fc 100% | 7.1 MiB/s | 29.1 KiB | 00m00s [35/41] python3-gitdb-0:4.0.10-5.fc40.n 100% | 13.9 MiB/s | 128.4 KiB | 00m00s [36/41] openssh-clients-0:9.6p1-1.fc40. 100% | 72.6 MiB/s | 743.3 KiB | 00m00s [37/41] python3-smmap-0:5.0.0-8.fc40.no 100% | 6.7 MiB/s | 55.2 KiB | 00m00s [38/41] openssh-0:9.6p1-1.fc40.4.x86_64 100% | 51.3 MiB/s | 420.6 KiB | 00m00s [39/41] libfido2-0:1.14.0-4.fc40.x86_64 100% | 19.1 MiB/s | 97.6 KiB | 00m00s [40/41] libcbor-0:0.11.0-1.fc40.x86_64 100% | 6.5 MiB/s | 33.3 KiB | 00m00s [41/41] git-core-0:2.47.1-1.fc40.x86_64 100% | 100.6 MiB/s | 4.8 MiB | 00m00s -------------------------------------------------------------------------------- [41/41] Total 100% | 44.0 MiB/s | 11.4 MiB | 00m00s Running transaction [ 1/43] Verify package files 100% | 836.0 B/s | 41.0 B | 00m00s [ 2/43] Prepare transaction 100% | 661.0 B/s | 41.0 B | 00m00s [ 3/43] Installing python3-attrs-0:23.2 100% | 128.3 MiB/s | 394.0 KiB | 00m00s [ 4/43] Installing python3-rpds-py-0:0. 100% | 227.1 MiB/s | 697.6 KiB | 00m00s [ 5/43] Installing python3-referencing- 100% | 157.7 MiB/s | 322.9 KiB | 00m00s [ 6/43] Installing python3-traitlets-0: 100% | 239.6 MiB/s | 981.5 KiB | 00m00s [ 7/43] Installing python3-jupyter-core 100% | 129.2 MiB/s | 529.3 KiB | 00m00s [ 8/43] Installing python3-jsonschema-s 100% | 26.9 MiB/s | 55.1 KiB | 00m00s [ 9/43] Installing python3-jsonschema-0 100% | 212.8 MiB/s | 871.7 KiB | 00m00s [10/43] Installing libcbor-0:0.11.0-1.f 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [11/43] Installing libfido2-0:1.14.0-4. 100% | 233.7 MiB/s | 239.3 KiB | 00m00s [12/43] Installing openssh-0:9.6p1-1.fc 100% | 364.8 MiB/s | 1.8 MiB | 00m00s [13/43] Installing libedit-0:3.1-54.202 100% | 240.1 MiB/s | 245.9 KiB | 00m00s [14/43] Installing openssh-clients-0:9. 100% | 109.2 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.6p1-1.fc40.4.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.6p1-1.fc40.4.x86_64 [15/43] Installing git-core-0:2.47.1-1. 100% | 395.4 MiB/s | 22.5 MiB | 00m00s [16/43] Installing python3-smmap-0:5.0. 100% | 100.5 MiB/s | 205.9 KiB | 00m00s [17/43] Installing python3-gitdb-0:4.0. 100% | 169.2 MiB/s | 519.7 KiB | 00m00s [18/43] Installing python3-zombie-imp-0 100% | 30.3 MiB/s | 62.0 KiB | 00m00s [19/43] Installing python3-boto-0:2.49. 100% | 239.8 MiB/s | 10.1 MiB | 00m00s [20/43] Installing python3-fastjsonsche 100% | 191.7 MiB/s | 196.3 KiB | 00m00s [21/43] Installing libyaml-0:0.2.5-14.f 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [22/43] Installing python3-pyyaml-0:6.0 100% | 260.5 MiB/s | 800.2 KiB | 00m00s [23/43] Installing python3-plac-0:1.4.3 100% | 225.2 MiB/s | 230.6 KiB | 00m00s [24/43] Installing python3-dpath-0:2.1. 100% | 96.1 MiB/s | 98.4 KiB | 00m00s [25/43] Installing python3-yte-0:1.5.5- 100% | 65.2 MiB/s | 66.8 KiB | 00m00s [26/43] Installing python3-conda-inject 100% | 25.6 MiB/s | 26.2 KiB | 00m00s [27/43] Installing python3-nbformat-0:5 100% | 142.7 MiB/s | 584.5 KiB | 00m00s [28/43] Installing python3-smart_open-0 100% | 166.4 MiB/s | 511.3 KiB | 00m00s [29/43] Installing python3-GitPython-0: 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [30/43] Installing python3-tabulate-0:0 100% | 339.0 MiB/s | 347.1 KiB | 00m00s [31/43] Installing python3-stopit-0:1.1 100% | 33.9 MiB/s | 69.4 KiB | 00m00s [32/43] Installing python3-slackclient- 100% | 161.0 MiB/s | 3.1 MiB | 00m00s [33/43] Installing python3-pygments-0:2 100% | 257.1 MiB/s | 10.5 MiB | 00m00s [34/43] Installing python3-psutil-0:5.9 100% | 360.3 MiB/s | 1.4 MiB | 00m00s [35/43] Installing python3-immutables-0 100% | 92.9 MiB/s | 190.4 KiB | 00m00s [36/43] Installing python3-humanfriendl 100% | 182.7 MiB/s | 561.2 KiB | 00m00s [37/43] Installing python3-docutils-0:0 100% | 232.7 MiB/s | 4.9 MiB | 00m00s [38/43] Installing python3-datrie-0:0.8 100% | 218.2 MiB/s | 446.9 KiB | 00m00s [39/43] Installing python3-connection_p 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [40/43] Installing python3-appdirs-0:1. 100% | 0.0 B/s | 71.1 KiB | 00m00s [41/43] Installing python3-toposort-0:1 100% | 30.1 MiB/s | 30.8 KiB | 00m00s [42/43] Installing python3-snakemake-in 100% | 36.9 MiB/s | 37.8 KiB | 00m00s [43/43] Installing python3-pulp-0:2.9.0 100% | 15.6 MiB/s | 1.1 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-33.fc40.x86_64 >>> Running trigger-install scriptlet: man-db-0:2.12.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: man-db-0:2.12.0-6.fc40.x86_64 >>> Running trigger-install scriptlet: systemd-0:255.15-1.fc40.x86_64 >>> Stop trigger-install scriptlet: systemd-0:255.15-1.fc40.x86_64 Warning: skipped PGP checks for 41 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.a30mI5 + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires -x reports,messaging Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.0.3) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.5) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.10,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.10,>=2.3.1 (installed: pulp 2.9.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.1.0) Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.3.3) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.4) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.17.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.5) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.34.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 1.0 MiB/s | 30.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 191.6 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 116.5 KiB/s | 1.5 KiB | 00m00s updates 100% | 104.2 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "environment-modules-5.4.0-1.fc40.x86_64" is already installed. Package "graphviz-9.0.0-11.fc40.x86_64" is already installed. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc40.noarch" is already installed. Package "python-unversioned-command-3.12.8-2.fc40.noarch" is already installed. Package "python3-devel-3.12.8-2.fc40.x86_64" is already installed. Package "python3-appdirs-1.4.4-13.fc40.noarch" is already installed. Package "python3-boto3-1.35.92-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-3.fc40.noarch" is already installed. Package "python3-connection_pool-0.0.3-11.fc40.noarch" is already installed. Package "python3-datrie-0.8.2-25.fc40.x86_64" is already installed. Package "python3-docutils-0.20.1-3.fc40.noarch" is already installed. Package "python3-flask-1:3.0.3-4.fc40.noarch" is already installed. Package "python3-GitPython-3.1.40-4.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Package "python3-humanfriendly-10.0-10.fc40.noarch" is already installed. Package "python3-immutables-0.20-3.fc40.x86_64" is already installed. Package "python3-jsonschema-4.19.1-3.fc40.noarch" is already installed. Package "python3-nbformat-5.9.2-3.fc40.noarch" is already installed. Package "python3-packaging-23.2-4.fc40.noarch" is already installed. Package "python3-pandas-2.2.1-1.fc40.x86_64" is already installed. Package "python3-pip-23.3.2-2.fc40.noarch" is already installed. Package "python3-psutil-5.9.8-1.fc40.x86_64" is already installed. Package "python3-pygments-2.17.2-3.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-3.fc40.noarch" is already installed. Package "python3-pytest-mock-3.12.0-4.fc40.noarch" is already installed. Package "python3-pyyaml-6.0.1-14.fc40.x86_64" is already installed. Package "python3-reretry-0.11.8-8.fc40.noarch" is already installed. Package "python3-setuptools-69.0.3-4.fc40.noarch" is already installed. Package "python3-slackclient-3.34.0-1.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-fs-1.0.6-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-http-0.2.3-5.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.12-1.fc40.noarch" is already installed. Package "python3-stopit-1.1.2-10.fc40.noarch" is already installed. Package "python3-tabulate-0.9.0-6.fc40.noarch" is already installed. Package "python3-throttler-1.2.2-9.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed. Package "python3-wrapt-1.17.0-1.fc40.x86_64" is already installed. Package "strace-6.12-1.fc40.x86_64" is already installed. Package "stress-1.0.7-4.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.984-1.fc40.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1728777600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.BrFTZN + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires -x reports,messaging Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.0.3) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2/snakemake-8.18.2.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.5) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.10,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.10,>=2.3.1 (installed: pulp 2.9.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=4.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=4.0 (installed: smart-open 7.1.0) Handling snakemake-interface-executor-plugins <10.0,>=9.2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.2.0 (installed: snakemake-interface-executor-plugins 9.3.3) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.4) Handling snakemake-interface-storage-plugins <4.0,>=3.2.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.2.3 (installed: snakemake-interface-storage-plugins 3.3.0) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.17.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.5) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.2) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.34.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.18.2.dist-info/ removed 'snakemake-8.18.2.dist-info/entry_points.txt' removed 'snakemake-8.18.2.dist-info/top_level.txt' removed 'snakemake-8.18.2.dist-info/METADATA' removed 'snakemake-8.18.2.dist-info/LICENSE.md' removed directory 'snakemake-8.18.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bsSF8U + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 + mkdir -p /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-8.18.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info writing /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-modern-metadata-1h44hm0y/snakemake-8.18.2.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/api.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/cli.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/ioflags.py -> build/lib/snakemake copying snakemake/ioutils.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/spawn_jobs.py -> build/lib/snakemake copying snakemake/storage.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/storage.py -> build/lib/snakemake/caching creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common copying snakemake/common/argparse.py -> build/lib/snakemake/common copying snakemake/common/configfile.py -> build/lib/snakemake/common copying snakemake/common/git.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/typing.py -> build/lib/snakemake/common copying snakemake/common/workdir_handler.py -> build/lib/snakemake/common creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying snakemake/executors/local.py -> build/lib/snakemake/executors copying snakemake/executors/touch.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report copying snakemake/report/common.py -> build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report creating build/lib/snakemake/script copying snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/settings copying snakemake/settings/__init__.py -> build/lib/snakemake/settings copying snakemake/settings/enums.py -> build/lib/snakemake/settings copying snakemake/settings/types.py -> build/lib/snakemake/settings creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/common/tests copying snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups creating build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/__init__.py -> build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/common.py -> build/lib/snakemake/report/html_reporter creating build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/__init__.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/categories.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/common.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/configfiles.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/packages.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/results.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rulegraph.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rules.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/runtimes.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/timeline.py -> build/lib/snakemake/report/html_reporter/data creating build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/__init__.py -> build/lib/snakemake/report/html_reporter/template creating build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/__init__.py -> build/lib/snakemake/report/html_reporter/template/components creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying snakemake/report/html_reporter/template/style.css -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/index.html.jinja2 -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/logo.svg -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/components/abstract_menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/abstract_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/app.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/category.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/common.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/content.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/icon.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_heading.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_item.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/navbar.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/report_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_view_button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_graph.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/search_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/stats.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/subcategory.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '8.18.2' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/api.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cli.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioflags.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioutils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/spawn_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/storage.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/storage.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/argparse.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/configfile.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/git.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/typing.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/common/tests copying build/lib/snakemake/common/tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/testcases/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/local.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/touch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote creating build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/configfiles.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/script copying build/lib/snakemake/script/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/script creating build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/enums.py -> build/bdist.linux-x86_64/wheel/snakemake/settings copying build/lib/snakemake/settings/types.py -> build/bdist.linux-x86_64/wheel/snakemake/settings creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-8.18.2-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-8.18.2.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir/pip-wheel-veb12x24/.tmp-7_49stgf/snakemake-8.18.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/api.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cli.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/ioflags.py' adding 'snakemake/ioutils.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/spawn_jobs.py' adding 'snakemake/storage.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/storage.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/argparse.py' adding 'snakemake/common/configfile.py' adding 'snakemake/common/git.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/common/typing.py' adding 'snakemake/common/workdir_handler.py' adding 'snakemake/common/tests/__init__.py' adding 'snakemake/common/tests/testcases/__init__.py' adding 'snakemake/common/tests/testcases/groups/Snakefile' adding 'snakemake/common/tests/testcases/groups/__init__.py' adding 'snakemake/common/tests/testcases/simple/Snakefile' adding 'snakemake/common/tests/testcases/simple/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/dryrun.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/local.py' adding 'snakemake/executors/touch.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/common.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/html_reporter/__init__.py' adding 'snakemake/report/html_reporter/common.py' adding 'snakemake/report/html_reporter/data/__init__.py' adding 'snakemake/report/html_reporter/data/categories.py' adding 'snakemake/report/html_reporter/data/common.py' adding 'snakemake/report/html_reporter/data/configfiles.py' adding 'snakemake/report/html_reporter/data/packages.py' adding 'snakemake/report/html_reporter/data/results.py' adding 'snakemake/report/html_reporter/data/rulegraph.py' adding 'snakemake/report/html_reporter/data/rules.py' adding 'snakemake/report/html_reporter/data/runtimes.py' adding 'snakemake/report/html_reporter/data/timeline.py' adding 'snakemake/report/html_reporter/template/__init__.py' adding 'snakemake/report/html_reporter/template/index.html.jinja2' adding 'snakemake/report/html_reporter/template/logo.svg' adding 'snakemake/report/html_reporter/template/style.css' adding 'snakemake/report/html_reporter/template/components/__init__.py' adding 'snakemake/report/html_reporter/template/components/abstract_menu.js' adding 'snakemake/report/html_reporter/template/components/abstract_results.js' adding 'snakemake/report/html_reporter/template/components/app.js' adding 'snakemake/report/html_reporter/template/components/breadcrumbs.js' adding 'snakemake/report/html_reporter/template/components/button.js' adding 'snakemake/report/html_reporter/template/components/category.js' adding 'snakemake/report/html_reporter/template/components/common.js' adding 'snakemake/report/html_reporter/template/components/content.js' adding 'snakemake/report/html_reporter/template/components/icon.js' adding 'snakemake/report/html_reporter/template/components/list_heading.js' adding 'snakemake/report/html_reporter/template/components/list_item.js' adding 'snakemake/report/html_reporter/template/components/menu.js' adding 'snakemake/report/html_reporter/template/components/navbar.js' adding 'snakemake/report/html_reporter/template/components/report_info.js' adding 'snakemake/report/html_reporter/template/components/result_info.js' adding 'snakemake/report/html_reporter/template/components/result_view_button.js' adding 'snakemake/report/html_reporter/template/components/rule_graph.js' adding 'snakemake/report/html_reporter/template/components/rule_info.js' adding 'snakemake/report/html_reporter/template/components/search_results.js' adding 'snakemake/report/html_reporter/template/components/stats.js' adding 'snakemake/report/html_reporter/template/components/subcategory.js' adding 'snakemake/script/__init__.py' adding 'snakemake/settings/__init__.py' adding 'snakemake/settings/enums.py' adding 'snakemake/settings/types.py' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-8.18.2.dist-info/LICENSE.md' adding 'snakemake-8.18.2.dist-info/METADATA' adding 'snakemake-8.18.2.dist-info/WHEEL' adding 'snakemake-8.18.2.dist-info/entry_points.txt' adding 'snakemake-8.18.2.dist-info/top_level.txt' adding 'snakemake-8.18.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-8.18.2-py3-none-any.whl size=307215 sha256=b7221c0cc4baea7bd09c3a4392013624229fc8ff4d0169388df5088809ba8894 Stored in directory: /builddir/.cache/pip/wheels/d3/d4/e5/90fa7e56ee2b1cdbc6cb23a6cc37c388df57bb69a0b2d2aa8d Successfully built snakemake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Gr0lOP + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 ++ ls /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir/snakemake-8.18.2-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==8.18.2 + '[' -z snakemake==8.18.2 ']' + TMPDIR=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir snakemake==8.18.2 Using pip 23.3.2 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-8.18.2/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-8.18.2-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin/snakemake to 755 Successfully installed snakemake-8.18.2 + '[' -d /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin/snakemake: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 --record /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/RECORD --output /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.18.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/man/man1 + PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: messaging extras' snakemake + install -t /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 8.18.2-4.fc40 --unique-debug-suffix -8.18.2-4.fc40.x86_64 --unique-debug-src-base snakemake-8.18.2-4.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-8.18.2 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.1fg4SO + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.18.2 + '[' '!' -f /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/snakemake-8.18.2-4.fc40.x86_64-pyproject-modules -e '*.tests*' -e snakemake.executors.flux Check import: snakemake Check import: snakemake.api Check import: snakemake.benchmark Check import: snakemake.caching Check import: snakemake.caching.hash Check import: snakemake.caching.local Check import: snakemake.caching.storage Check import: snakemake.checkpoints Check import: snakemake.cli Check import: snakemake.common Check import: snakemake.common.argparse Check import: snakemake.common.configfile Check import: snakemake.common.git Check import: snakemake.common.tbdstring Check import: snakemake.common.typing Check import: snakemake.common.workdir_handler Check import: snakemake.cwl Check import: snakemake.dag Check import: snakemake.decorators Check import: snakemake.deployment Check import: snakemake.deployment.conda Check import: snakemake.deployment.containerize Check import: snakemake.deployment.env_modules Check import: snakemake.deployment.singularity Check import: snakemake.exceptions Check import: snakemake.executors Check import: snakemake.executors.dryrun Check import: snakemake.executors.google_lifesciences_helper Check import: snakemake.executors.local Check import: snakemake.executors.touch Check import: snakemake.gui Check import: snakemake.io Check import: snakemake.ioflags Check import: snakemake.ioutils Check import: snakemake.jobs Check import: snakemake.linting Check import: snakemake.linting.links Check import: snakemake.linting.rules Check import: snakemake.linting.snakefiles Check import: snakemake.logging Check import: snakemake.modules Check import: snakemake.notebook Check import: snakemake.output_index Check import: snakemake.parser Check import: snakemake.path_modifier Check import: snakemake.persistence Check import: snakemake.profiles Check import: snakemake.remote Check import: snakemake.remote.AzBlob Check import: snakemake.remote.EGA Check import: snakemake.remote.FTP Check import: snakemake.remote.GS Check import: snakemake.remote.HTTP Check import: snakemake.remote.NCBI Check import: snakemake.remote.S3 Check import: snakemake.remote.S3Mocked Check import: snakemake.remote.SFTP Check import: snakemake.remote.XRootD Check import: snakemake.remote.dropbox Check import: snakemake.remote.gfal Check import: snakemake.remote.gridftp Check import: snakemake.remote.iRODS Check import: snakemake.remote.webdav Check import: snakemake.remote.zenodo Check import: snakemake.report Check import: snakemake.report.common Check import: snakemake.report.html_reporter Check import: snakemake.report.html_reporter.common Check import: snakemake.report.html_reporter.data Check import: snakemake.report.html_reporter.data.categories Check import: snakemake.report.html_reporter.data.common Check import: snakemake.report.html_reporter.data.configfiles Check import: snakemake.report.html_reporter.data.packages Check import: snakemake.report.html_reporter.data.results Check import: snakemake.report.html_reporter.data.rulegraph Check import: snakemake.report.html_reporter.data.rules Check import: snakemake.report.html_reporter.data.runtimes Check import: snakemake.report.html_reporter.data.timeline Check import: snakemake.report.html_reporter.template Check import: snakemake.report.html_reporter.template.components Check import: snakemake.report.rulegraph_spec Check import: snakemake.resources Check import: snakemake.ruleinfo Check import: snakemake.rules Check import: snakemake.scheduler Check import: snakemake.script Check import: snakemake.settings Check import: snakemake.settings.enums Check import: snakemake.settings.types Check import: snakemake.shell Check import: snakemake.sourcecache Check import: snakemake.spawn_jobs Check import: snakemake.storage Check import: snakemake.target_jobs Check import: snakemake.template_rendering Check import: snakemake.template_rendering.jinja2 Check import: snakemake.template_rendering.yte Check import: snakemake.unit_tests Check import: snakemake.unit_tests.templates Check import: snakemake.utils Check import: snakemake.workflow Check import: snakemake.wrapper + k='not test_ancient' + k='not test_ancient and not test_containerized' + k='not test_ancient and not test_containerized and not test_default_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode' + k='not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode and not test_upstream_conda' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-8.18.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v -k 'not test_ancient and not test_containerized and not test_default_storage and not test_default_storage_local_job and not test_github_issue78 and not test_issue1083 and not test_load_metawrapper and not test_module_complex and not test_module_complex2 and not test_module_report and not test_module_with_script and not test_modules_meta_wrapper and not test_modules_prefix and not test_output_file_cache_storage and not test_report and not test_report_dir and not test_report_display_code and not test_report_zip and not test_rule_inheritance_globals and not test_storage and not test_shell_exec and not test_singularity_conda and not test_containerized and not test_cwl_singularity and not test_archive and not test_conda and not test_conda_create_envs_only and not test_conda_custom_prefix and not test_conda_function and not test_conda_global and not test_conda_named and not test_conda_pin_file and not test_conda_python_3_7_script and not test_conda_python_script and not test_converting_path_for_r_script and not test_deploy_hashing and not test_deploy_script and not test_issue1093 and not test_issue635 and not test_jupyter_notebook and not test_jupyter_notebook_draft and not test_prebuilt_conda_script and not test_script and not test_script_pre_py39 and not test_wrapper and not test_wrapper_local_git_prefix and not test_modules_peppy and not test_pep_pathlib and not test_peppy and not test_strict_mode and not test_upstream_conda' tests/tests.py tests/test_expand.py tests/test_io.py tests/test_schema.py tests/test_linting.py tests/test_executor_test_suite.py ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-8.18.2 plugins: mock-3.12.0 collecting ... collected 343 items / 58 deselected / 285 selected tests/tests.py::test_list_untracked PASSED [ 0%] tests/tests.py::test_delete_all_output PASSED [ 0%] tests/tests.py::test_github_issue_14 PASSED [ 1%] tests/tests.py::test_issue956 PASSED [ 1%] tests/tests.py::test01 PASSED [ 1%] tests/tests.py::test02 PASSED [ 2%] tests/tests.py::test03 PASSED [ 2%] tests/tests.py::test04 PASSED [ 2%] tests/tests.py::test05 PASSED [ 3%] tests/tests.py::test06 PASSED [ 3%] tests/tests.py::test07 PASSED [ 3%] tests/tests.py::test08 PASSED [ 4%] tests/tests.py::test09 PASSED [ 4%] tests/tests.py::test10 PASSED [ 4%] tests/tests.py::test11 PASSED [ 5%] tests/tests.py::test12 PASSED [ 5%] tests/tests.py::test13 PASSED [ 5%] tests/tests.py::test15 PASSED [ 6%] tests/tests.py::test_set_threads PASSED [ 6%] tests/tests.py::test_glpk_solver PASSED [ 7%] tests/tests.py::test_coin_solver PASSED [ 7%] tests/tests.py::test_directory PASSED [ 7%] tests/tests.py::test_directory2 PASSED [ 8%] tests/tests.py::test_set_resources_complex_profile PASSED [ 8%] tests/tests.py::test_set_resources_complex_cli PASSED [ 8%] tests/tests.py::test_params PASSED [ 9%] tests/tests.py::test_same_wildcard PASSED [ 9%] tests/tests.py::test_conditional PASSED [ 9%] tests/tests.py::test_unpack_dict PASSED [ 10%] tests/tests.py::test_unpack_list PASSED [ 10%] tests/tests.py::test_shell PASSED [ 10%] tests/tests.py::test_temp PASSED [ 11%] tests/tests.py::test_keyword_list PASSED [ 11%] tests/tests.py::test_globwildcards PASSED [ 11%] tests/tests.py::test_ioutils PASSED [ 12%] tests/tests.py::test_local_import PASSED [ 12%] tests/tests.py::test_ruledeps PASSED [ 12%] tests/tests.py::test_url_include SKIPPED (no internet connection) [ 13%] tests/tests.py::test_touch PASSED [ 13%] tests/tests.py::test_touch_flag_with_directories PASSED [ 14%] tests/tests.py::test_config PASSED [ 14%] tests/tests.py::test_update_config PASSED [ 14%] tests/tests.py::test_config_merging PASSED [ 15%] tests/tests.py::test_wildcard_keyword PASSED [ 15%] tests/tests.py::test_benchmark PASSED [ 15%] tests/tests.py::test_benchmark_jsonl PASSED [ 16%] tests/tests.py::test_temp_expand PASSED [ 16%] tests/tests.py::test_wildcard_count_ambiguity PASSED [ 16%] tests/tests.py::test_multiple_includes PASSED [ 17%] tests/tests.py::test_name_override PASSED [ 17%] tests/tests.py::test_yaml_config PASSED [ 17%] tests/tests.py::test_symlink_temp SKIPPED (This does not work reliab...) [ 18%] tests/tests.py::test_empty_include PASSED [ 18%] tests/tests.py::test_shadow PASSED [ 18%] tests/tests.py::test_shadow_copy PASSED [ 19%] tests/tests.py::test_shadow_prefix PASSED [ 19%] tests/tests.py::test_shadowed_log PASSED [ 20%] tests/tests.py::test_until PASSED [ 20%] tests/tests.py::test_omitfrom PASSED [ 20%] tests/tests.py::test_nonstr_params PASSED [ 21%] tests/tests.py::test_delete_output PASSED [ 21%] tests/tests.py::test_input_generator PASSED [ 21%] tests/tests.py::test_symlink_time_handling PASSED [ 22%] tests/tests.py::test_protected_symlink_output PASSED [ 22%] tests/tests.py::test_get_log_none PASSED [ 22%] tests/tests.py::test_get_log_both PASSED [ 23%] tests/tests.py::test_get_log_stderr PASSED [ 23%] tests/tests.py::test_get_log_stdout PASSED [ 23%] tests/tests.py::test_get_log_complex PASSED [ 24%] tests/tests.py::test_spaces_in_fnames PASSED [ 24%] tests/tests.py::test_deferred_func_eval PASSED [ 24%] tests/tests.py::test_format_params PASSED [ 25%] tests/tests.py::test_rule_defined_in_for_loop PASSED [ 25%] tests/tests.py::test_issue381 PASSED [ 25%] tests/tests.py::test_format_wildcards PASSED [ 26%] tests/tests.py::test_with_parentheses PASSED [ 26%] tests/tests.py::test_dup_out_patterns PASSED [ 27%] tests/tests.py::test_issue2826_failed_binary_logs PASSED [ 27%] tests/tests.py::test_threads PASSED [ 27%] tests/tests.py::test_threads0 PASSED [ 28%] tests/tests.py::test_run_namedlist PASSED [ 28%] tests/tests.py::test_profile PASSED [ 28%] tests/tests.py::test_singularity SKIPPED (no internet connection) [ 29%] tests/tests.py::test_singularity_cluster SKIPPED (no internet connec...) [ 29%] tests/tests.py::test_singularity_invalid PASSED [ 29%] tests/tests.py::test_singularity_module_invalid PASSED [ 30%] tests/tests.py::test_singularity_none SKIPPED (no internet connection) [ 30%] tests/tests.py::test_singularity_global SKIPPED (no internet connection) [ 30%] tests/tests.py::test_issue612 PASSED [ 31%] tests/tests.py::test_bash PASSED [ 31%] tests/tests.py::test_inoutput_is_path PASSED [ 31%] tests/tests.py::test_log_input PASSED [ 32%] tests/tests.py::test_issue805 PASSED [ 32%] tests/tests.py::test_issue823_1 PASSED [ 32%] tests/tests.py::test_issue823_2 PASSED [ 33%] tests/tests.py::test_issue823_3 PASSED [ 33%] tests/tests.py::test_pathlib PASSED [ 34%] tests/tests.py::test_pathlib_missing_file PASSED [ 34%] tests/tests.py::test_group_jobs PASSED [ 34%] tests/tests.py::test_group_jobs_attempts PASSED [ 35%] tests/tests.py::test_groups_out_of_jobs PASSED [ 35%] tests/tests.py::test_group_jobs_resources PASSED [ 35%] tests/tests.py::test_group_jobs_resources_with_max_threads PASSED [ 36%] tests/tests.py::test_group_jobs_resources_with_limited_resources PASSED [ 36%] tests/tests.py::test_global_resource_limits_limit_scheduling_of_groups PASSED [ 36%] tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 37%] tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 37%] tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 37%] tests/tests.py::test_resources_submitted_to_cluster PASSED [ 38%] tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 38%] tests/tests.py::test_group_job_resources_with_pipe PASSED [ 38%] tests/tests.py::test_group_job_resources_with_pipe_with_too_much_constraint PASSED [ 39%] tests/tests.py::test_multicomp_group_jobs PASSED [ 39%] tests/tests.py::test_group_job_fail PASSED [ 40%] tests/tests.py::test_pipes_simple PASSED [ 40%] tests/tests.py::test_pipes_multiple PASSED [ 40%] tests/tests.py::test_pipes_fail PASSED [ 41%] tests/tests.py::test_validate PASSED [ 41%] tests/tests.py::test_validate_fail PASSED [ 41%] tests/tests.py::test_issue854 PASSED [ 42%] tests/tests.py::test_issue850 PASSED [ 42%] tests/tests.py::test_issue860 PASSED [ 42%] tests/tests.py::test_issue894 PASSED [ 43%] tests/tests.py::test_issue584 PASSED [ 43%] tests/tests.py::test_issue912 PASSED [ 43%] tests/tests.py::test_job_properties PASSED [ 44%] tests/tests.py::test_issue916 PASSED [ 44%] tests/tests.py::test_issue930 PASSED [ 44%] tests/tests.py::test_convert_to_cwl SKIPPED (Temporarily disable unt...) [ 45%] tests/tests.py::test_issue1037 PASSED [ 45%] tests/tests.py::test_issue1046 PASSED [ 45%] tests/tests.py::test_checkpoints PASSED [ 46%] tests/tests.py::test_checkpoints_dir PASSED [ 46%] tests/tests.py::test_issue1092 PASSED [ 47%] tests/tests.py::test_issue958 PASSED [ 47%] tests/tests.py::test_issue471 PASSED [ 47%] tests/tests.py::test_issue1085 PASSED [ 48%] tests/tests.py::test_pipes2 PASSED [ 48%] tests/tests.py::test_expand_flag PASSED [ 48%] tests/tests.py::test_default_resources PASSED [ 49%] tests/tests.py::test_tmpdir PASSED [ 49%] tests/tests.py::test_tmpdir_default PASSED [ 49%] tests/tests.py::test_issue1284 PASSED [ 50%] tests/tests.py::test_issue1281 PASSED [ 50%] tests/tests.py::test_filegraph PASSED [ 50%] tests/tests.py::test_batch PASSED [ 51%] tests/tests.py::test_batch_final PASSED [ 51%] tests/tests.py::test_batch_fail PASSED [ 51%] tests/tests.py::test_github_issue52 PASSED [ 52%] tests/tests.py::test_envvars PASSED [ 52%] tests/tests.py::test_github_issue105 PASSED [ 52%] tests/tests.py::test_github_issue413 PASSED [ 53%] tests/tests.py::test_github_issue627 PASSED [ 53%] tests/tests.py::test_github_issue727 PASSED [ 54%] tests/tests.py::test_github_issue988 PASSED [ 54%] tests/tests.py::test_github_issue1062 SKIPPED (ftp connections curre...) [ 54%] tests/tests.py::test_output_file_cache PASSED [ 55%] tests/tests.py::test_multiext PASSED [ 55%] tests/tests.py::test_core_dependent_threads PASSED [ 55%] tests/tests.py::test_env_modules PASSED [ 56%] tests/tests.py::test_container SKIPPED (no internet connection) [ 56%] tests/tests.py::test_string_resources PASSED [ 56%] tests/tests.py::test_github_issue456 PASSED [ 57%] tests/tests.py::test_scatter_gather PASSED [ 57%] tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 57%] tests/tests.py::test_github_issue640 PASSED [ 58%] tests/tests.py::test_generate_unit_tests PASSED [ 58%] tests/tests.py::test_paramspace PASSED [ 58%] tests/tests.py::test_paramspace_single_wildcard PASSED [ 59%] tests/tests.py::test_github_issue806 PASSED [ 59%] tests/tests.py::test_containerize PASSED [ 60%] tests/tests.py::test_long_shell PASSED [ 60%] tests/tests.py::test_modules_all PASSED [ 60%] tests/tests.py::test_module_nested PASSED [ 61%] tests/tests.py::test_modules_all_exclude_1 PASSED [ 61%] tests/tests.py::test_modules_all_exclude_2 PASSED [ 61%] tests/tests.py::test_modules_specific PASSED [ 62%] tests/tests.py::test_use_rule_same_module PASSED [ 62%] tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 62%] tests/tests.py::test_module_worfklow_namespacing PASSED [ 63%] tests/tests.py::test_handover PASSED [ 63%] tests/tests.py::test_source_path PASSED [ 63%] tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 64%] tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 64%] tests/tests.py::test_set_resources PASSED [ 64%] tests/tests.py::test_github_issue1069 PASSED [ 65%] tests/tests.py::test_max_jobs_per_timespan PASSED [ 65%] tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 65%] tests/tests.py::test_all_temp PASSED [ 66%] tests/tests.py::test_github_issue1158 PASSED [ 66%] tests/tests.py::test_checkpoint_allowed_rules PASSED [ 67%] 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[ 86%] tests/tests.py::test_handle_storage_multi_consumers PASSED [ 87%] tests/tests.py::test_github_issue2732 PASSED [ 87%] tests/tests.py::test_expand_list_of_functions PASSED [ 87%] tests/tests.py::test_scheduler_sequential_all_cores PASSED [ 88%] tests/tests.py::test_checkpoint_open PASSED [ 88%] tests/test_expand.py::test_simple_expand PASSED [ 88%] tests/test_expand.py::test_allow_missing PASSED [ 89%] tests/test_io.py::test_wildcard_regex PASSED [ 89%] tests/test_io.py::test_expand PASSED [ 89%] tests/test_schema.py::test_config PASSED [ 90%] tests/test_schema.py::test_config_ref PASSED [ 90%] tests/test_schema.py::test_dataframe PASSED [ 90%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 91%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 91%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 91%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 92%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 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tests/test_linting.py::test_lint[path_add-positive] PASSED [ 97%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 97%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 98%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 98%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 98%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 99%] tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow PASSED [ 99%] tests/test_executor_test_suite.py::TestWorkflows::test_group_workflow PASSED [100%] =============================== warnings summary =============================== tests/tests.py::test_list_untracked :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/tests.py::test_list_untracked :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/tests.py::test_list_untracked /usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/tests.py: 4 warnings tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-8.18.2/snakemake/utils.py:52: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html === 274 passed, 11 skipped, 58 deselected, 19 warnings in 412.20s (0:06:52) ==== cannot schedule new futures after shutdown + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-8.18.2-4.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.KAaU9Y + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + DOCDIR=/builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2/README.md /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2/README-nano.md /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.18.2/README-vim.md /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.12dist(snakemake) = 8.18.2 python3dist(snakemake) = 8.18.2 snakemake = 8.18.2-4.fc40 vim-snakemake = 8.18.2-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(conda-inject) < 2~~ with python3.12dist(conda-inject) >= 1.3.1) (python3.12dist(dpath) < 3~~ with python3.12dist(dpath) >= 2.1.6) (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(pulp) < 2.10~~ with python3.12dist(pulp) >= 2.3.1) (python3.12dist(requests) < 3~~ with python3.12dist(requests) >= 2.8.1) (python3.12dist(smart-open) < 8~~ with python3.12dist(smart-open) >= 4) (python3.12dist(snakemake-interface-common) < 2~~ with python3.12dist(snakemake-interface-common) >= 1.17) (python3.12dist(snakemake-interface-executor-plugins) < 10~~ with python3.12dist(snakemake-interface-executor-plugins) >= 9.2) (python3.12dist(snakemake-interface-report-plugins) < 2~~ with python3.12dist(snakemake-interface-report-plugins) >= 1) (python3.12dist(snakemake-interface-storage-plugins) < 4~~ with python3.12dist(snakemake-interface-storage-plugins) >= 3.2.3) (python3.12dist(toposort) < 2~~ with python3.12dist(toposort) >= 1.10) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(immutables) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pyyaml) python3.12dist(reretry) python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(wrapt) Obsoletes: snakemake+azure < 8.1.0-1 snakemake+google-cloud < 8.1.0-1 snakemake-doc < 8.2.1-2 Processing files: snakemake+reports-8.18.2-4.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 8.18.2 python3dist(snakemake[reports]) = 8.18.2 snakemake+reports = 8.18.2-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-8.18.2-4.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 8.18.2 python3dist(snakemake[messaging]) = 8.18.2 snakemake+messaging = 8.18.2-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slack-sdk) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 Wrote: /builddir/build/SRPMS/snakemake-8.18.2-4.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake+reports-8.18.2-4.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-8.18.2-4.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-8.18.2-4.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.9AHnt2 + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.18.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-8.18.2-4.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.kTVPe0 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-8.18.2-SPECPARTS + rm -rf snakemake-8.18.2 snakemake-8.18.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-8.18.2-4.fc40.src.rpm Finish: build phase for snakemake-8.18.2-4.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1736364211.458127/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-8.18.2-4.fc40.src.rpm) Config(child) 7 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake", "epoch": null, "version": "8.18.2", "release": "4.fc40", "arch": "src" }, { "name": "snakemake+messaging", "epoch": null, "version": "8.18.2", "release": "4.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.18.2", "release": "4.fc40", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "8.18.2", "release": "4.fc40", "arch": "noarch" } ] } RPMResults finished