Warning: Permanently added '98.83.215.222' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8488726-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.2 PID: 9169 Logging PID: 9170 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8488726, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'aba0155c823903d850f5170b54fd3fc3a170174f', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f41:custom:isolated/python-bluepyopt', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-bluepyopt', 'package_version': '1.14.13-1', 'project_dirname': 'jinja2-3.1.5-f41:custom:isolated', 'project_name': 'jinja2-3.1.5-f41', 'project_owner': 'churchyard', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/jinja2-3.1.5-f41/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f41-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch'}], 'sandbox': 'churchyard/jinja2-3.1.5-f41--churchyard', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'churchyard', 'tags': [], 'task_id': '8488726-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f41:custom:isolated/python-bluepyopt /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/jinja2-3.1.5-f41:custom:isolated/python-bluepyopt', '/var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt'... Running: git checkout aba0155c823903d850f5170b54fd3fc3a170174f -- cmd: ['git', 'checkout', 'aba0155c823903d850f5170b54fd3fc3a170174f', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt rc: 0 stdout: stderr: Note: switching to 'aba0155c823903d850f5170b54fd3fc3a170174f'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at aba0155 automatic import of python-bluepyopt Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/jinja2-3.1.5-f41:custom:isolated/python-bluepyopt/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz/md5/f5c212b4f993d6c67b3c7f23185bc1e4/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 28.2M 100 28.2M 0 0 25.5M 0 0:00:01 0:00:01 --:--:-- 25.6M INFO: Reading stdout from command: md5sum BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt/python-bluepyopt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736363797.837158 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt/python-bluepyopt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736363797.837158 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt/python-bluepyopt.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1736363797.837158/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-d5c51a2d-28c2-4223-b602-0c0affed95cd INFO: Checking that 4b6e09cb21b0b21e79a54d011edfb4c7969b61b24323a64261cbe34bd294d49e image matches host's architecture INFO: Copy content of container 4b6e09cb21b0b21e79a54d011edfb4c7969b61b24323a64261cbe34bd294d49e to /var/lib/mock/fedora-41-x86_64-bootstrap-1736363797.837158/root INFO: mounting 4b6e09cb21b0b21e79a54d011edfb4c7969b61b24323a64261cbe34bd294d49e with podman image mount INFO: image 4b6e09cb21b0b21e79a54d011edfb4c7969b61b24323a64261cbe34bd294d49e as /var/lib/containers/storage/overlay/8f016905ed6520775034a1d28a2ef6287295c05be42b7f9fb8c7a60231d9de29/merged INFO: umounting image 4b6e09cb21b0b21e79a54d011edfb4c7969b61b24323a64261cbe34bd294d49e (/var/lib/containers/storage/overlay/8f016905ed6520775034a1d28a2ef6287295c05be42b7f9fb8c7a60231d9de29/merged) with podman image umount INFO: Removing image mock-bootstrap-d5c51a2d-28c2-4223-b602-0c0affed95cd INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1736363797.837158/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 6.2 MiB/s | 7.9 MiB | 00m01s fedora 100% | 16.9 MiB/s | 35.4 MiB | 00m02s Copr repository 100% | 65.3 KiB/s | 3.0 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 127.1 MiB/s | 14.4 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B). 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KiB | 00m00s [ 79/154] openblas-srpm-macros-0:2-18.f 100% | 1.5 MiB/s | 7.7 KiB | 00m00s [ 80/154] ocaml-srpm-macros-0:10-3.fc41 100% | 1.3 MiB/s | 9.2 KiB | 00m00s [ 81/154] package-notes-srpm-macros-0:0 100% | 1.6 MiB/s | 9.8 KiB | 00m00s [ 82/154] perl-srpm-macros-0:1-56.fc41. 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 83/154] python-srpm-macros-0:3.13-3.f 100% | 4.6 MiB/s | 23.7 KiB | 00m00s [ 84/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 1.7 MiB/s | 8.9 KiB | 00m00s [ 85/154] rust-srpm-macros-0:26.3-3.fc4 100% | 2.4 MiB/s | 12.1 KiB | 00m00s [ 86/154] zig-srpm-macros-0:1-3.fc41.no 100% | 1.6 MiB/s | 8.1 KiB | 00m00s [ 87/154] zip-0:3.0-41.fc41.x86_64 100% | 43.1 MiB/s | 264.8 KiB | 00m00s [ 88/154] pkgconf-0:2.3.0-1.fc41.x86_64 100% | 8.8 MiB/s | 45.2 KiB | 00m00s [ 89/154] pkgconf-m4-0:2.3.0-1.fc41.noa 100% | 2.8 MiB/s | 14.3 KiB | 00m00s [ 90/154] libpkgconf-0:2.3.0-1.fc41.x86 100% | 5.4 MiB/s | 38.5 KiB | 00m00s [ 91/154] ed-0:1.20.2-2.fc41.x86_64 100% | 11.4 MiB/s | 81.8 KiB | 00m00s [ 92/154] libtirpc-0:1.3.6-1.rc3.fc41.x 100% | 14.6 MiB/s | 89.4 KiB | 00m00s [ 93/154] gdbm-1:1.23-7.fc41.x86_64 100% | 18.0 MiB/s | 147.2 KiB | 00m00s [ 94/154] authselect-0:1.5.0-8.fc41.x86 100% | 15.3 MiB/s | 141.2 KiB | 00m00s [ 95/154] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 5.8 MiB/s | 29.6 KiB | 00m00s [ 96/154] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 9.2 MiB/s | 56.3 KiB | 00m00s [ 97/154] openssl-libs-1:3.2.2-10.fc41. 100% | 108.4 MiB/s | 2.2 MiB | 00m00s [ 98/154] crypto-policies-0:20241029-1. 100% | 11.8 MiB/s | 72.7 KiB | 00m00s [ 99/154] libpwquality-0:1.4.5-11.fc41. 100% | 13.2 MiB/s | 108.2 KiB | 00m00s [100/154] ca-certificates-0:2024.2.69_v 100% | 106.4 MiB/s | 871.2 KiB | 00m00s [101/154] ncurses-base-0:6.5-2.20240629 100% | 12.5 MiB/s | 63.8 KiB | 00m00s [102/154] libcom_err-0:1.47.1-6.fc41.x8 100% | 4.3 MiB/s | 26.6 KiB | 00m00s [103/154] krb5-libs-0:1.21.3-3.fc41.x86 100% | 73.6 MiB/s | 753.8 KiB | 00m00s [104/154] libsepol-0:3.7-2.fc41.x86_64 100% | 47.7 MiB/s | 342.2 KiB | 00m00s [105/154] pcre2-0:10.44-1.fc41.1.x86_64 100% | 39.6 MiB/s | 243.1 KiB | 00m00s [106/154] cracklib-0:2.9.11-6.fc41.x86_ 100% | 16.0 MiB/s | 81.7 KiB | 00m00s [107/154] libxml2-0:2.12.9-1.fc41.x86_6 100% | 91.6 MiB/s | 656.8 KiB | 00m00s [108/154] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 8.6 MiB/s | 70.7 KiB | 00m00s [109/154] keyutils-libs-0:1.6.3-4.fc41. 100% | 5.2 MiB/s | 31.6 KiB | 00m00s [110/154] libzstd-0:1.5.6-2.fc41.x86_64 100% | 33.7 MiB/s | 310.3 KiB | 00m00s [111/154] libverto-0:0.3.2-9.fc41.x86_6 100% | 4.0 MiB/s | 20.7 KiB | 00m00s [112/154] basesystem-0:11-21.fc41.noarc 100% | 1.8 MiB/s | 7.4 KiB | 00m00s [113/154] glibc-common-0:2.40-17.fc41.x 100% | 52.0 MiB/s | 372.5 KiB | 00m00s [114/154] gmp-1:6.3.0-2.fc41.x86_64 100% | 44.4 MiB/s | 318.0 KiB | 00m00s [115/154] mpfr-0:4.2.1-5.fc41.x86_64 100% | 37.6 MiB/s | 346.3 KiB | 00m00s [116/154] filesystem-0:3.18-23.fc41.x86 100% | 89.1 MiB/s | 1.1 MiB | 00m00s [117/154] file-libs-0:5.45-7.fc41.x86_6 100% | 74.4 MiB/s | 762.0 KiB | 00m00s [118/154] elfutils-debuginfod-client-0: 100% | 7.1 MiB/s | 43.9 KiB | 00m00s [119/154] fedora-repos-0:41-1.noarch 100% | 1.1 MiB/s | 9.2 KiB | 00m00s [120/154] elfutils-libs-0:0.192-7.fc41. 100% | 24.5 MiB/s | 250.8 KiB | 00m00s [121/154] libffi-0:3.4.6-3.fc41.x86_64 100% | 2.6 MiB/s | 39.9 KiB | 00m00s [122/154] coreutils-common-0:9.5-11.fc4 100% | 72.3 MiB/s | 2.1 MiB | 00m00s [123/154] libstdc++-0:14.2.1-3.fc41.x86 100% | 28.9 MiB/s | 887.8 KiB | 00m00s [124/154] p11-kit-trust-0:0.25.5-3.fc41 100% | 16.1 MiB/s | 132.1 KiB | 00m00s [125/154] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 33.3 MiB/s | 477.3 KiB | 00m00s [126/154] add-determinism-0:0.3.6-3.fc4 100% | 65.8 MiB/s | 875.9 KiB | 00m00s [127/154] alternatives-0:1.31-1.fc41.x8 100% | 6.4 MiB/s | 39.4 KiB | 00m00s [128/154] jansson-0:2.13.1-10.fc41.x86_ 100% | 6.2 MiB/s | 44.4 KiB | 00m00s [129/154] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 14.3 MiB/s | 132.0 KiB | 00m00s [130/154] rpm-sequoia-0:1.7.0-3.fc41.x8 100% | 67.2 MiB/s | 825.7 KiB | 00m00s [131/154] sqlite-libs-0:3.46.1-1.fc41.x 100% | 77.3 MiB/s | 712.7 KiB | 00m00s [132/154] libgomp-0:14.2.1-3.fc41.x86_6 100% | 43.2 MiB/s | 354.1 KiB | 00m00s [133/154] pcre2-syntax-0:10.44-1.fc41.1 100% | 24.4 MiB/s | 149.9 KiB | 00m00s [134/154] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 12.1 MiB/s | 74.2 KiB | 00m00s [135/154] elfutils-default-yama-scope-0 100% | 1.7 MiB/s | 12.5 KiB | 00m00s [136/154] fedora-gpg-keys-0:41-1.noarch 100% | 15.1 MiB/s | 123.5 KiB | 00m00s [137/154] json-c-0:0.17-4.fc41.x86_64 100% | 4.3 MiB/s | 44.0 KiB | 00m00s [138/154] fedora-release-0:41-29.noarch 100% | 2.5 MiB/s | 12.8 KiB | 00m00s [139/154] xxhash-libs-0:0.8.3-1.fc41.x8 100% | 7.0 MiB/s | 35.9 KiB | 00m00s [140/154] fedora-release-identity-basic 100% | 3.3 MiB/s | 13.6 KiB | 00m00s [141/154] openldap-0:2.6.8-6.fc41.x86_6 100% | 29.7 MiB/s | 243.0 KiB | 00m00s [142/154] libcurl-0:8.9.1-2.fc41.x86_64 100% | 35.3 MiB/s | 361.9 KiB | 00m00s [143/154] gdb-minimal-0:15.2-3.fc41.x86 100% | 179.7 MiB/s | 4.3 MiB | 00m00s [144/154] libidn2-0:2.3.7-2.fc41.x86_64 100% | 12.2 MiB/s | 112.6 KiB | 00m00s [145/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 30.2 MiB/s | 340.5 KiB | 00m00s [146/154] libnghttp2-0:1.62.1-2.fc41.x8 100% | 12.5 MiB/s | 76.6 KiB | 00m00s [147/154] libpsl-0:0.21.5-4.fc41.x86_64 100% | 12.5 MiB/s | 64.1 KiB | 00m00s [148/154] libssh-0:0.10.6-8.fc41.x86_64 100% | 34.5 MiB/s | 211.8 KiB | 00m00s [149/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 86.2 MiB/s | 794.9 KiB | 00m00s [150/154] libevent-0:2.1.12-14.fc41.x86 100% | 35.9 MiB/s | 257.5 KiB | 00m00s [151/154] libtool-ltdl-0:2.4.7-12.fc41. 100% | 5.0 MiB/s | 35.6 KiB | 00m00s [152/154] libssh-config-0:0.10.6-8.fc41 100% | 2.3 MiB/s | 9.2 KiB | 00m00s [153/154] libunistring-0:1.1-8.fc41.x86 100% | 66.5 MiB/s | 544.8 KiB | 00m00s [154/154] publicsuffix-list-dafsa-0:202 100% | 11.4 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 99.2 MiB/s | 51.9 MiB | 00m01s Running transaction [ 1/156] Verify package files 100% | 865.0 B/s | 154.0 B | 00m00s [ 2/156] Prepare transaction 100% | 3.7 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-3. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s [ 4/156] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 940.0 B | 00m00s [ 7/156] Installing fedora-gpg-keys-0: 100% | 42.0 MiB/s | 172.2 KiB | 00m00s [ 8/156] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/156] Installing fedora-release-com 100% | 23.4 MiB/s | 24.0 KiB | 00m00s [ 10/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 11/156] Installing setup-0:2.15.0-8.f 100% | 59.1 MiB/s | 726.5 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/156] Installing filesystem-0:3.18- 100% | 3.3 MiB/s | 212.5 KiB | 00m00s [ 13/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 15/156] Installing coreutils-common-0 100% | 339.1 MiB/s | 11.2 MiB | 00m00s [ 16/156] Installing ncurses-base-0:6.5 100% | 68.7 MiB/s | 351.7 KiB | 00m00s [ 17/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/156] Installing ncurses-libs-0:6.5 100% | 191.8 MiB/s | 981.8 KiB | 00m00s [ 19/156] Installing glibc-0:2.40-17.fc 100% | 275.6 MiB/s | 6.6 MiB | 00m00s [ 20/156] Installing bash-0:5.2.32-1.fc 100% | 371.3 MiB/s | 8.2 MiB | 00m00s [ 21/156] Installing glibc-common-0:2.4 100% | 172.6 MiB/s | 1.0 MiB | 00m00s [ 22/156] Installing glibc-gconv-extra- 100% | 231.3 MiB/s | 7.9 MiB | 00m00s [ 23/156] Installing zlib-ng-compat-0:2 100% | 131.6 MiB/s | 134.8 KiB | 00m00s [ 24/156] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 25/156] Installing bzip2-libs-0:1.0.8 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [ 26/156] Installing libuuid-0:2.40.2-4 100% | 0.0 B/s | 38.6 KiB | 00m00s [ 27/156] Installing readline-0:8.2-10. 100% | 241.8 MiB/s | 495.3 KiB | 00m00s [ 28/156] Installing popt-0:1.19-7.fc41 100% | 70.1 MiB/s | 143.5 KiB | 00m00s [ 29/156] Installing libblkid-0:2.40.2- 100% | 253.4 MiB/s | 259.5 KiB | 00m00s [ 30/156] Installing libxcrypt-0:4.4.37 100% | 265.9 MiB/s | 272.3 KiB | 00m00s [ 31/156] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 29.5 KiB | 00m00s [ 32/156] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.7 KiB | 00m00s [ 33/156] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s [ 34/156] Installing elfutils-libelf-0: 100% | 291.8 MiB/s | 1.2 MiB | 00m00s [ 35/156] Installing gmp-1:6.3.0-2.fc41 100% | 264.9 MiB/s | 813.7 KiB | 00m00s [ 36/156] Installing libstdc++-0:14.2.1 100% | 345.8 MiB/s | 2.8 MiB | 00m00s [ 37/156] Installing libeconf-0:0.6.2-3 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 38/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s [ 39/156] Installing mpfr-0:4.2.1-5.fc4 100% | 271.4 MiB/s | 833.7 KiB | 00m00s [ 40/156] Installing gawk-0:5.3.0-4.fc4 100% | 247.4 MiB/s | 1.7 MiB | 00m00s [ 41/156] Installing dwz-0:0.15-8.fc41. 100% | 293.3 MiB/s | 300.3 KiB | 00m00s [ 42/156] Installing unzip-0:6.0-64.fc4 100% | 190.6 MiB/s | 390.3 KiB | 00m00s [ 43/156] Installing file-libs-0:5.45-7 100% | 584.4 MiB/s | 9.9 MiB | 00m00s [ 44/156] Installing file-0:5.45-7.fc41 100% | 11.4 MiB/s | 105.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41. >>> Finished pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41 >>> Scriptlet output: >>> /var/tmp/rpm-tmp.OhRAJi: line 2: rm: command not found >>> [ 45/156] Installing crypto-policies-0: 100% | 26.6 MiB/s | 163.3 KiB | 00m00s [ 46/156] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [ 47/156] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s [ 48/156] Installing pam-libs-0:1.6.1-7 100% | 137.9 MiB/s | 141.3 KiB | 00m00s [ 49/156] Installing libcap-0:2.70-4.fc 100% | 110.0 MiB/s | 225.2 KiB | 00m00s [ 50/156] Installing systemd-libs-0:256 100% | 284.3 MiB/s | 2.0 MiB | 00m00s [ 51/156] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 52/156] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 53/156] Installing libsepol-0:3.7-2.f 100% | 266.5 MiB/s | 818.8 KiB | 00m00s [ 54/156] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s [ 55/156] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 56/156] Installing sed-0:4.9-3.fc41.x 100% | 212.3 MiB/s | 869.7 KiB | 00m00s [ 57/156] Installing grep-0:3.11-9.fc41 100% | 200.7 MiB/s | 1.0 MiB | 00m00s [ 58/156] Installing findutils-1:4.10.0 100% | 265.4 MiB/s | 1.9 MiB | 00m00s [ 59/156] Installing xz-1:5.6.2-2.fc41. 100% | 200.8 MiB/s | 1.2 MiB | 00m00s [ 60/156] Installing libmount-0:2.40.2- 100% | 172.3 MiB/s | 352.9 KiB | 00m00s [ 61/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 62/156] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 63/156] Installing alternatives-0:1.3 100% | 64.8 MiB/s | 66.4 KiB | 00m00s [ 64/156] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s [ 65/156] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 66/156] Installing p11-kit-0:0.25.5-3 100% | 245.3 MiB/s | 2.2 MiB | 00m00s [ 67/156] Installing libunistring-0:1.1 100% | 346.1 MiB/s | 1.7 MiB | 00m00s [ 68/156] Installing libidn2-0:2.3.7-2. 100% | 109.1 MiB/s | 335.1 KiB | 00m00s [ 69/156] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s [ 70/156] Installing p11-kit-trust-0:0. 100% | 38.4 MiB/s | 393.1 KiB | 00m00s [ 71/156] Installing openssl-libs-1:3.2 100% | 320.2 MiB/s | 7.7 MiB | 00m00s [ 72/156] Installing coreutils-0:9.5-11 100% | 228.3 MiB/s | 5.7 MiB | 00m00s [ 73/156] Installing ca-certificates-0: 100% | 3.4 MiB/s | 2.4 MiB | 00m01s [ 74/156] Installing gzip-0:1.13-2.fc41 100% | 128.4 MiB/s | 394.6 KiB | 00m00s [ 75/156] Installing authselect-libs-0: 100% | 136.3 MiB/s | 837.2 KiB | 00m00s [ 76/156] Installing cracklib-0:2.9.11- 100% | 61.1 MiB/s | 250.3 KiB | 00m00s [ 77/156] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB | 00m00s [ 78/156] Installing rpm-sequoia-0:1.7. 100% | 290.5 MiB/s | 2.3 MiB | 00m00s [ 79/156] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.5 KiB | 00m00s [ 80/156] Installing zstd-0:1.5.6-2.fc4 100% | 338.3 MiB/s | 1.7 MiB | 00m00s [ 81/156] Installing util-linux-core-0: 100% | 212.2 MiB/s | 1.5 MiB | 00m00s [ 82/156] Installing tar-2:1.35-4.fc41. 100% | 328.7 MiB/s | 3.0 MiB | 00m00s [ 83/156] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB | 00m00s [ 84/156] Installing shadow-utils-2:4.1 100% | 143.6 MiB/s | 4.2 MiB | 00m00s [ 85/156] Installing libutempter-0:1.2. 100% | 29.2 MiB/s | 59.7 KiB | 00m00s [ 86/156] Installing zip-0:3.0-41.fc41. 100% | 230.2 MiB/s | 707.1 KiB | 00m00s [ 87/156] Installing gdbm-1:1.23-7.fc41 100% | 151.6 MiB/s | 465.8 KiB | 00m00s [ 88/156] Installing cyrus-sasl-lib-0:2 100% | 329.4 MiB/s | 2.3 MiB | 00m00s [ 89/156] Installing libfdisk-0:2.40.2- 100% | 177.8 MiB/s | 364.1 KiB | 00m00s [ 90/156] Installing bzip2-0:1.0.8-19.f 100% | 97.8 MiB/s | 100.2 KiB | 00m00s [ 91/156] Installing libxml2-0:2.12.9-1 100% | 281.0 MiB/s | 1.7 MiB | 00m00s [ 92/156] Installing libarchive-0:3.7.4 100% | 302.3 MiB/s | 928.6 KiB | 00m00s [ 93/156] Installing add-determinism-0: 100% | 336.6 MiB/s | 2.4 MiB | 00m00s [ 94/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 95/156] Installing sqlite-libs-0:3.46 100% | 285.9 MiB/s | 1.4 MiB | 00m00s [ 96/156] Installing rpm-libs-0:4.20.0- 100% | 236.8 MiB/s | 727.4 KiB | 00m00s [ 97/156] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 98/156] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB | 00m00s [ 99/156] Installing elfutils-default-y 100% | 255.4 KiB/s | 2.0 KiB | 00m00s [100/156] Installing elfutils-libs-0:0. 100% | 213.8 MiB/s | 656.7 KiB | 00m00s [101/156] Installing cpio-0:2.15-2.fc41 100% | 219.9 MiB/s | 1.1 MiB | 00m00s [102/156] Installing diffutils-0:3.10-8 100% | 265.0 MiB/s | 1.6 MiB | 00m00s [103/156] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s [104/156] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [105/156] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [106/156] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [107/156] Installing krb5-libs-0:1.21.3 100% | 289.9 MiB/s | 2.3 MiB | 00m00s [108/156] Installing libtirpc-0:1.3.6-1 100% | 194.7 MiB/s | 199.4 KiB | 00m00s [109/156] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s 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0.0 B/s | 776.0 B | 00m00s [136/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/156] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [146/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [147/156] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 92.8 MiB/s | 190.1 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 99.0 MiB/s | 202.8 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 138.8 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 79.1 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1-3.fc41. 100% | 376.1 KiB/s | 362.2 KiB | 00m01s Warning: skipped OpenPGP checks for 154 packages from repository: http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-3.fc41.x86_64 alternatives-1.31-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc41.x86_64 authselect-libs-1.5.0-8.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-5.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch coreutils-9.5-11.fc41.x86_64 coreutils-common-9.5-11.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241029-1.git8baf557.fc41.noarch curl-8.9.1-2.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-2.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc41.noarch elfutils-0.192-7.fc41.x86_64 elfutils-debuginfod-client-0.192-7.fc41.x86_64 elfutils-default-yama-scope-0.192-7.fc41.noarch elfutils-libelf-0.192-7.fc41.x86_64 elfutils-libs-0.192-7.fc41.x86_64 fedora-gpg-keys-41-1.noarch fedora-release-41-29.noarch fedora-release-common-41-29.noarch fedora-release-identity-basic-41-29.noarch fedora-repos-41-1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-3.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-17.fc41.x86_64 glibc-common-2.40-17.fc41.x86_64 glibc-gconv-extra-2.40-17.fc41.x86_64 glibc-minimal-langpack-2.40-17.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc41.noarch grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 json-c-0.17-4.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-4.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-4.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc41.x86_64 libcurl-8.9.1-2.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-4.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.2.1-3.fc41.x86_64 libgomp-14.2.1-3.fc41.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-4.fc41.x86_64 libnghttp2-1.62.1-2.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-4.fc41.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-3.fc41.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.2-4.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.37-4.fc41.x86_64 libxml2-2.12.9-1.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc41.x86_64 openssl-libs-3.2.2-10.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-7.fc41.x86_64 pam-libs-1.6.1-7.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc41.noarch qt6-srpm-macros-6.8.1-4.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-293-1.fc41.noarch rpm-4.20.0-1.fc41.x86_64 rpm-build-4.20.0-1.fc41.x86_64 rpm-build-libs-4.20.0-1.fc41.x86_64 rpm-libs-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 rust-srpm-macros-26.3-3.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-8.fc41.noarch shadow-utils-4.15.1-12.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.10-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-4.fc41.x86_64 util-linux-core-2.40.2-4.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.3-1.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-3.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.13-1.fc41.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1736363797.837158/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-xm392bpf/python-bluepyopt/python-bluepyopt.spec) Config(child) 0 minutes 24 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-bluepyopt-1.14.13-1.fc41.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1736363797.837158/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1736363797.837158/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1736363797.837158/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Finish: chroot init Start: build phase for python-bluepyopt-1.14.13-1.fc41.src.rpm Start: build setup for python-bluepyopt-1.14.13-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.13-1.fc41.src.rpm Updating and loading repositories: fedora 100% | 102.9 KiB/s | 29.7 KiB | 00m00s updates 100% | 323.9 KiB/s | 29.5 KiB | 00m00s Copr repository 100% | 116.5 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 191.6 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: arbor x86_64 0.9.0-10.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 6.0 MiB gcc-c++ x86_64 14.2.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 38.2 MiB libX11-devel x86_64 1.8.10-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.0 MiB libXext-devel x86_64 1.3.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 98.9 KiB neuron-devel x86_64 8.2.2-11.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 471.2 KiB python3-devel x86_64 3.13.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.8 MiB python3-jupyter-client noarch 8.6.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 899.8 KiB python3-lfpy x86_64 2.3.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 MiB python3-matplotlib x86_64 3.9.4-1.fc41 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00m00s [171/296] Installing python3-attrs-0:24 100% | 133.7 MiB/s | 410.7 KiB | 00m00s [172/296] Installing python3-webencodin 100% | 88.6 MiB/s | 90.8 KiB | 00m00s [173/296] Installing python3-idna-0:3.7 100% | 196.0 MiB/s | 602.1 KiB | 00m00s [174/296] Installing python3-dateutil-1 100% | 218.0 MiB/s | 892.9 KiB | 00m00s [175/296] Installing python3-markupsafe 100% | 20.0 MiB/s | 61.5 KiB | 00m00s [176/296] Installing python3-pygments-0 100% | 246.4 MiB/s | 10.8 MiB | 00m00s [177/296] Installing python3-platformdi 100% | 85.5 MiB/s | 175.0 KiB | 00m00s [178/296] Installing python3-jupyter-co 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [179/296] Installing python3-rpds-py-0: 100% | 224.0 MiB/s | 688.1 KiB | 00m00s [180/296] Installing python3-referencin 100% | 163.9 MiB/s | 335.6 KiB | 00m00s [181/296] Installing python3-frozenlist 100% | 154.9 MiB/s | 158.6 KiB | 00m00s [182/296] Installing python3-multidict- 100% | 82.3 MiB/s | 168.5 KiB | 00m00s [183/296] Installing mpich-0:4.2.2-1.fc 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repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch Complete! Finish: build setup for python-bluepyopt-1.14.13-1.fc41.src.rpm Start: rpmbuild python-bluepyopt-1.14.13-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.HDOu5e + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + test -d /builddir/build/BUILD/python-bluepyopt-1.14.13-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-bluepyopt-1.14.13-build + /usr/bin/rm -rf /builddir/build/BUILD/python-bluepyopt-1.14.13-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NYkhnn + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + rm -rf BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + cp -v /builddir/build/SOURCES/_version.py bluepyopt/_version.py '/builddir/build/SOURCES/_version.py' -> 'bluepyopt/_version.py' + sed -i '/scoop/ d' setup.py + sed -i 's/^\(.*:.*\)jupyter$/\1/' Makefile + sed -i 's/python l5pc_validate_neuron_arbor_pm.py/python3 l5pc_validate_neuron_arbor_pm.py/g' Makefile + rm -f bluepyopt/tests/test_neuroml_fcts.py + find examples/ -name .gitignore -delete + find examples/ -name dummy.inc -delete + find examples/ -type f -name '*.py' -exec sed -i 's|^#![ ]*/usr/bin/env.*$|#!/usr/bin/python3/|' '{}' ';' + find examples/ -type f -name '*.py' -exec chmod -x '{}' ';' + find examples/ -type f -name '*.mod' -exec sed -i 's/\r$//' '{}' ';' + find examples/ -type f -name '*.asc' -exec sed -i 's/\r$//' '{}' ';' + find examples/ -type f -name '*.csv' -exec sed -i 's/\r$//' '{}' ';' ++ grep '^MODSUBDIR' /usr/bin/nrnivmodl ++ cut -d = -f2 + export MODSUBDIR=x86_64 + MODSUBDIR=x86_64 + sed -i s/x86_64/x86_64/ Makefile + sed -i s/x86_64/x86_64/ bluepyopt/tests/test_l5pc.py + sed -i s/x86_64/x86_64/ bluepyopt/tests/test_stochkv.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.TBZ7Jp + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info creating bluepyopt.egg-info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt writing manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.13-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 110.9 KiB/s | 29.7 KiB | 00m00s updates 100% | 323.9 KiB/s | 29.5 KiB | 00m00s Copr repository 100% | 108.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 212.8 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc41.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc41.noarch" is already installed. Package "arbor-0.9.0-10.fc41.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc41.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-6.fc41.noarch" is already installed. Package "python3-lfpy-2.3.2-4.fc41.x86_64" is already installed. Package "python3-matplotlib-3.9.4-1.fc41.x86_64" is already installed. Package "python3-meautility-1.5.1-12.fc41.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-4.fc41.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc41.noarch" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 11.4 MiB python3-wheel noarch 1:0.43.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 516.1 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 3 MiB. After this operation, 12 MiB extra will be used (install 12 MiB, remove 0 B). [1/2] python3-wheel-1:0.43.0-4.fc41.noa 100% | 4.8 MiB/s | 151.0 KiB | 00m00s [2/2] python3-pip-0:24.2-1.fc41.noarch 100% | 69.7 MiB/s | 2.5 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 71.8 MiB/s | 2.7 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 222.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 68.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.43.0 100% | 87.1 MiB/s | 535.1 KiB | 00m00s [4/4] Installing python3-pip-0:24.2-1.f 100% | 128.2 MiB/s | 11.7 MiB | 00m00s Warning: skipped OpenPGP checks for 2 packages from repository: http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.NaVn5w + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt-1.14.13.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 1.26.4) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: pandas >=0.18 Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: deap >=1.3.3 Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: efel >=2.13 Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: ipyparallel Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: pickleshare >=0.7.3 Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.5) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: Pebble >=4.6.0 Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.13.dist-info/ removed 'bluepyopt-1.14.13.dist-info/entry_points.txt' removed 'bluepyopt-1.14.13.dist-info/top_level.txt' removed 'bluepyopt-1.14.13.dist-info/METADATA' removed 'bluepyopt-1.14.13.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.13.dist-info/COPYING' removed 'bluepyopt-1.14.13.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.13.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.13.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.13-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 512.6 KiB/s | 29.7 KiB | 00m00s updates 100% | 258.6 KiB/s | 29.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 159.6 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 58.3 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc41.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc41.noarch" is already installed. Package "arbor-0.9.0-10.fc41.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc41.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-6.fc41.noarch" is already installed. Package "python3-lfpy-2.3.2-4.fc41.x86_64" is already installed. Package "python3-matplotlib-3.9.4-1.fc41.x86_64" is already installed. Package "python3-meautility-1.5.1-12.fc41.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-4.fc41.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc41.noarch" is already installed. Package "python3-jinja2-3.1.5-1.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-deap x86_64 1.4.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 897.0 KiB python3-efel x86_64 5.4.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 551.5 KiB python3-ipyparallel noarch 9.0.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.9 MiB python3-pandas x86_64 2.2.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 42.0 MiB python3-pebble noarch 5.1.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 210.3 KiB python3-pickleshare noarch 0.7.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 27.2 KiB Installing dependencies: python-jupyter-filesystem noarch 5.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 0.0 B python3-Bottleneck x86_64 1.3.7-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 627.3 KiB python3-asttokens noarch 2.4.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 209.1 KiB python3-comm noarch 0.2.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 32.3 KiB python3-decorator noarch 5.1.1-11.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 77.6 KiB python3-executing noarch 2.1.0^20240916git3f11fdc-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 265.2 KiB python3-ipykernel noarch 6.29.3-6.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 957.5 KiB python3-ipython noarch 8.26.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 4.5 MiB python3-jedi noarch 0.19.1-10.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 5.6 MiB python3-matplotlib-inline noarch 0.1.7-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 39.6 KiB python3-neo noarch 0.13.4-2.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 6.5 MiB python3-nest-asyncio noarch 1.6.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 25.8 KiB python3-numexpr x86_64 2.8.5-7.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 574.8 KiB python3-parso noarch 0.8.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 896.3 KiB python3-pexpect noarch 4.9.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 625.4 KiB python3-prompt-toolkit noarch 3.0.41-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 3.7 MiB python3-psutil x86_64 5.9.8-4.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 1.4 MiB python3-ptyprocess noarch 0.7.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 79.8 KiB python3-pure-eval noarch 0.2.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 100.3 KiB python3-pytz noarch 2024.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 223.7 KiB python3-quantities noarch 0.16.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 893.9 KiB python3-stack-data noarch 0.6.3-10.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 208.2 KiB python3-typing-extensions noarch 4.12.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 464.5 KiB python3-wcwidth noarch 0.2.13-5.fc41 http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch 559.8 KiB Transaction Summary: Installing: 30 packages Total size of inbound packages is 15 MiB. Need to download 15 MiB. After this operation, 74 MiB extra will be used (install 74 MiB, remove 0 B). [ 1/30] python3-efel-0:5.4.0-6.fc41.x86 100% | 5.7 MiB/s | 193.2 KiB | 00m00s [ 2/30] python3-pandas-0:2.2.1-7.fc41.x 100% | 255.4 MiB/s | 7.9 MiB | 00m00s [ 3/30] python3-deap-0:1.4.1-7.fc41.x86 100% | 2.9 MiB/s | 207.4 KiB | 00m00s [ 4/30] python3-ipyparallel-0:9.0.0-2.f 100% | 6.8 MiB/s | 489.9 KiB | 00m00s [ 5/30] python3-Bottleneck-0:1.3.7-7.fc 100% | 32.2 MiB/s | 165.0 KiB | 00m00s [ 6/30] python3-pickleshare-0:0.7.5-17. 100% | 2.5 MiB/s | 20.3 KiB | 00m00s [ 7/30] python3-pytz-0:2024.2-1.fc41.no 100% | 8.4 MiB/s | 59.9 KiB | 00m00s [ 8/30] python3-numexpr-0:2.8.5-7.fc41. 100% | 14.4 MiB/s | 161.7 KiB | 00m00s [ 9/30] python-jupyter-filesystem-0:5.7 100% | 2.3 MiB/s | 9.3 KiB | 00m00s [10/30] python3-decorator-0:5.1.1-11.fc 100% | 6.0 MiB/s | 30.8 KiB | 00m00s [11/30] python3-ipython-0:8.26.0-2.fc41 100% | 115.9 MiB/s | 1.0 MiB | 00m00s [12/30] python3-ipykernel-0:6.29.3-6.fc 100% | 19.1 MiB/s | 234.6 KiB | 00m00s [13/30] python3-comm-0:0.2.2-3.fc41.noa 100% | 5.0 MiB/s | 20.4 KiB | 00m00s [14/30] python3-matplotlib-inline-0:0.1 100% | 5.9 MiB/s | 24.0 KiB | 00m00s [15/30] python3-pebble-0:5.1.0-2.fc41.n 100% | 1.5 MiB/s | 71.4 KiB | 00m00s [16/30] python3-psutil-0:5.9.8-4.fc41.x 100% | 23.5 MiB/s | 265.0 KiB | 00m00s [17/30] python3-nest-asyncio-0:1.6.0-4. 100% | 3.8 MiB/s | 19.3 KiB | 00m00s [18/30] python3-typing-extensions-0:4.1 100% | 18.3 MiB/s | 93.8 KiB | 00m00s [19/30] python3-jedi-0:0.19.1-10.fc41.n 100% | 124.4 MiB/s | 1.2 MiB | 00m00s [20/30] python3-pexpect-0:4.9.0-6.fc41. 100% | 26.3 MiB/s | 161.6 KiB | 00m00s [21/30] python3-quantities-0:0.16.1-1.f 100% | 9.5 MiB/s | 223.9 KiB | 00m00s [22/30] python3-prompt-toolkit-0:3.0.41 100% | 95.2 MiB/s | 779.7 KiB | 00m00s [23/30] python3-stack-data-0:0.6.3-10.f 100% | 11.6 MiB/s | 59.2 KiB | 00m00s [24/30] python3-asttokens-0:2.4.1-7.fc4 100% | 11.2 MiB/s | 57.5 KiB | 00m00s [25/30] python3-executing-0:2.1.0^20240 100% | 10.7 MiB/s | 66.0 KiB | 00m00s [26/30] python3-pure-eval-0:0.2.3-1.fc4 100% | 6.7 MiB/s | 34.4 KiB | 00m00s [27/30] python3-ptyprocess-0:0.7.0-9.fc 100% | 7.0 MiB/s | 36.0 KiB | 00m00s [28/30] python3-wcwidth-0:0.2.13-5.fc41 100% | 9.3 MiB/s | 47.7 KiB | 00m00s [29/30] python3-parso-0:0.8.4-3.fc41.no 100% | 24.3 MiB/s | 199.4 KiB | 00m00s [30/30] python3-neo-0:0.13.4-2.fc41.noa 100% | 20.2 MiB/s | 1.3 MiB | 00m00s -------------------------------------------------------------------------------- [30/30] Total 100% | 84.5 MiB/s | 15.1 MiB | 00m00s Running transaction [ 1/32] Verify package files 100% | 612.0 B/s | 30.0 B | 00m00s [ 2/32] Prepare transaction 100% | 405.0 B/s | 30.0 B | 00m00s [ 3/32] Installing python3-matplotlib-i 100% | 42.7 MiB/s | 43.7 KiB | 00m00s [ 4/32] Installing python3-psutil-0:5.9 100% | 288.7 MiB/s | 1.4 MiB | 00m00s [ 5/32] Installing python3-decorator-0: 100% | 78.5 MiB/s | 80.3 KiB | 00m00s [ 6/32] Installing python-jupyter-files 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [ 7/32] Installing python3-parso-0:0.8. 100% | 127.2 MiB/s | 911.8 KiB | 00m00s [ 8/32] Installing python3-jedi-0:0.19. 100% | 86.0 MiB/s | 6.1 MiB | 00m00s [ 9/32] Installing python3-ptyprocess-0 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [10/32] Installing python3-pexpect-0:4. 100% | 157.2 MiB/s | 643.7 KiB | 00m00s [11/32] Installing python3-wcwidth-0:0. 100% | 184.0 MiB/s | 565.4 KiB | 00m00s [12/32] Installing python3-prompt-toolk 100% | 191.3 MiB/s | 3.8 MiB | 00m00s [13/32] Installing python3-pure-eval-0: 100% | 102.6 MiB/s | 105.0 KiB | 00m00s [14/32] Installing python3-executing-0: 100% | 131.9 MiB/s | 270.2 KiB | 00m00s [15/32] Installing python3-asttokens-0: 100% | 105.1 MiB/s | 215.3 KiB | 00m00s [16/32] Installing python3-stack-data-0 100% | 104.3 MiB/s | 213.5 KiB | 00m00s [17/32] Installing python3-ipython-0:8. 100% | 201.3 MiB/s | 4.6 MiB | 00m00s [18/32] Installing python3-quantities-0 100% | 115.2 MiB/s | 943.5 KiB | 00m00s [19/32] Installing python3-neo-0:0.13.4 100% | 222.9 MiB/s | 6.7 MiB | 00m00s [20/32] Installing python3-typing-exten 100% | 228.0 MiB/s | 466.9 KiB | 00m00s [21/32] Installing python3-nest-asyncio 100% | 27.1 MiB/s | 27.8 KiB | 00m00s [22/32] Installing python3-comm-0:0.2.2 100% | 34.5 MiB/s | 35.3 KiB | 00m00s [23/32] Installing python3-ipykernel-0: 100% | 160.6 MiB/s | 986.8 KiB | 00m00s [24/32] Installing python3-pytz-0:2024. 100% | 111.8 MiB/s | 229.0 KiB | 00m00s [25/32] Installing python3-numexpr-0:2. 100% | 142.3 MiB/s | 582.9 KiB | 00m00s [26/32] Installing python3-Bottleneck-0 100% | 90.9 MiB/s | 651.8 KiB | 00m00s [27/32] Installing python3-pandas-0:2.2 100% | 308.0 MiB/s | 42.2 MiB | 00m00s [28/32] Installing python3-ipyparallel- 100% | 180.5 MiB/s | 2.0 MiB | 00m00s [29/32] Installing python3-efel-0:5.4.0 100% | 182.6 MiB/s | 561.0 KiB | 00m00s [30/32] Installing python3-pickleshare- 100% | 28.6 MiB/s | 29.3 KiB | 00m00s [31/32] Installing python3-pebble-0:5.1 100% | 72.8 MiB/s | 223.6 KiB | 00m00s [32/32] Installing python3-deap-0:1.4.1 100% | 22.9 MiB/s | 913.6 KiB | 00m00s Warning: skipped OpenPGP checks for 30 packages from repository: http_kojipkgs_fedoraproject_org_repos_f41_build_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.AmIRDE + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt-1.14.13.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 1.26.4) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pandas >=0.18 (installed: pandas 2.2.1) Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: deap >=1.3.3 (installed: deap 1.4.1) Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: efel >=2.13 (installed: efel 5.4.0) Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: ipyparallel (installed: ipyparallel 9.0.0) Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pickleshare >=0.7.3 (installed: pickleshare 0.7.5) Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.5) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Pebble >=4.6.0 (installed: Pebble 5.1.0) Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.13.dist-info/ removed 'bluepyopt-1.14.13.dist-info/entry_points.txt' removed 'bluepyopt-1.14.13.dist-info/top_level.txt' removed 'bluepyopt-1.14.13.dist-info/METADATA' removed 'bluepyopt-1.14.13.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.13.dist-info/COPYING' removed 'bluepyopt-1.14.13.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.13.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.13.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.13-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 113.5 KiB/s | 29.7 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.6 KiB/s | 3.8 KiB | 00m00s updates 100% | 112.5 KiB/s | 29.5 KiB | 00m00s Copr repository 100% | 101.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc41.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc41.noarch" is already installed. Package "arbor-0.9.0-10.fc41.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc41.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-6.fc41.noarch" is already installed. Package "python3-lfpy-2.3.2-4.fc41.x86_64" is already installed. Package "python3-matplotlib-3.9.4-1.fc41.x86_64" is already installed. Package "python3-meautility-1.5.1-12.fc41.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-4.fc41.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc41.noarch" is already installed. Package "python3-deap-1.4.1-7.fc41.x86_64" is already installed. Package "python3-efel-5.4.0-6.fc41.x86_64" is already installed. Package "python3-ipyparallel-9.0.0-2.fc41.noarch" is already installed. Package "python3-jinja2-3.1.5-1.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.1-2.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pebble-5.1.0-2.fc41.noarch" is already installed. Package "python3-pickleshare-0.7.5-17.fc41.noarch" is already installed. Package "python3-pip-24.2-1.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-8.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1722211200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.70pvmt + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt-1.14.13.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 1.26.4) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pandas >=0.18 (installed: pandas 2.2.1) Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: deap >=1.3.3 (installed: deap 1.4.1) Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: efel >=2.13 (installed: efel 5.4.0) Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: ipyparallel (installed: ipyparallel 9.0.0) Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pickleshare >=0.7.3 (installed: pickleshare 0.7.5) Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.5) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Pebble >=4.6.0 (installed: Pebble 5.1.0) Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.13.dist-info/ removed 'bluepyopt-1.14.13.dist-info/entry_points.txt' removed 'bluepyopt-1.14.13.dist-info/top_level.txt' removed 'bluepyopt-1.14.13.dist-info/METADATA' removed 'bluepyopt-1.14.13.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.13.dist-info/COPYING' removed 'bluepyopt-1.14.13.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.13.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.13.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0jkATN + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir Processing /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info creating /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info writing /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-modern-metadata-4ddm36ke/bluepyopt-1.14.13.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: bluepyopt Building wheel for bluepyopt (pyproject.toml): started Running command Building wheel for bluepyopt (pyproject.toml) Warning: 'keywords' should be a list, got type 'tuple' running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/bluepyopt copying bluepyopt/__init__.py -> build/lib/bluepyopt copying bluepyopt/_version.py -> build/lib/bluepyopt copying bluepyopt/api.py -> build/lib/bluepyopt copying bluepyopt/evaluators.py -> build/lib/bluepyopt copying bluepyopt/objectives.py -> build/lib/bluepyopt copying bluepyopt/optimisations.py -> build/lib/bluepyopt copying bluepyopt/parameters.py -> build/lib/bluepyopt copying bluepyopt/stoppingCriteria.py -> build/lib/bluepyopt copying bluepyopt/tools.py -> build/lib/bluepyopt creating build/lib/bluepyopt/deapext copying bluepyopt/deapext/CMA_MO.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/CMA_SO.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/__init__.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/algorithms.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/hype.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/optimisations.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/optimisationsCMA.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/stoppingCriteria.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/utils.py -> build/lib/bluepyopt/deapext creating build/lib/bluepyopt/ephys copying bluepyopt/ephys/__init__.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/acc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/base.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/create_acc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/create_hoc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/efeatures.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/evaluators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/extra_features_utils.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/locations.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/mechanisms.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/models.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/morphologies.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/objectives.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/objectivescalculators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/parameters.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/protocols.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/recordings.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/responses.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/serializer.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/simulators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/stimuli.py -> build/lib/bluepyopt/ephys creating build/lib/bluepyopt/ipyp copying bluepyopt/ipyp/__init__.py -> build/lib/bluepyopt/ipyp copying bluepyopt/ipyp/bpopt_tasksdb.py -> build/lib/bluepyopt/ipyp creating build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/__init__.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/biophys.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/cell.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/morphology.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/simulation.py -> build/lib/bluepyopt/neuroml creating build/lib/bluepyopt/tests copying bluepyopt/tests/__init__.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/disable_simplecell_scoop.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_bluepyopt.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_evaluators.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_l5pc.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_lfpy.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_parameters.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_simplecell.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_stochkv.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_tools.py -> build/lib/bluepyopt/tests creating build/lib/bluepyopt/deapext/tools copying bluepyopt/deapext/tools/__init__.py -> build/lib/bluepyopt/deapext/tools copying bluepyopt/deapext/tools/selIBEA.py -> build/lib/bluepyopt/deapext/tools creating build/lib/bluepyopt/ephys/examples copying bluepyopt/ephys/examples/__init__.py -> build/lib/bluepyopt/ephys/examples creating build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/__init__.py -> build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/acc_iexpr.py -> build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/parameterscalers.py -> build/lib/bluepyopt/ephys/parameterscalers creating build/lib/bluepyopt/ephys/examples/simplecell copying bluepyopt/ephys/examples/simplecell/__init__.py -> build/lib/bluepyopt/ephys/examples/simplecell copying bluepyopt/ephys/examples/simplecell/simplecell.py -> build/lib/bluepyopt/ephys/examples/simplecell creating build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/__init__.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/deapext_test_utils.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_algorithms.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_hype.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_optimisations.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_optimisationsCMA.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_selIBEA.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_stoppingCriteria.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_utils.py -> build/lib/bluepyopt/tests/test_deapext creating build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/__init__.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_acc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_create_acc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_create_hoc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_evaluators.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_extra_features_utils.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_features.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_init.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_locations.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_mechanisms.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_models.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_morphologies.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_objectives.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_parameters.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_parameterscalers.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_protocols.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_recordings.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_serializer.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_simulators.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_stimuli.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/utils.py -> build/lib/bluepyopt/tests/test_ephys creating build/lib/bluepyopt/tests/test_ephys/testmodels copying bluepyopt/tests/test_ephys/testmodels/__init__.py -> build/lib/bluepyopt/tests/test_ephys/testmodels copying bluepyopt/tests/test_ephys/testmodels/dummycells.py -> build/lib/bluepyopt/tests/test_ephys/testmodels creating build/lib/bluepyopt/ephys/static copying bluepyopt/ephys/static/arbor_mechanisms.json -> build/lib/bluepyopt/ephys/static creating build/lib/bluepyopt/ephys/templates copying bluepyopt/ephys/templates/cell_template.jinja2 -> build/lib/bluepyopt/ephys/templates creating build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/_json_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/decor_acc_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/examples/simplecell/simple.swc -> build/lib/bluepyopt/ephys/examples/simplecell creating build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms UPDATING build/lib/bluepyopt/_version.py set build/lib/bluepyopt/_version.py to '1.14.13' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/api.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/evaluators.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/objectives.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/optimisations.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/parameters.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/tools.py -> build/bdist.linux-x86_64/wheel/bluepyopt creating build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/CMA_MO.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/CMA_SO.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/algorithms.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/hype.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/optimisations.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/optimisationsCMA.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext creating build/bdist.linux-x86_64/wheel/bluepyopt/deapext/tools copying build/lib/bluepyopt/deapext/tools/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext/tools copying build/lib/bluepyopt/deapext/tools/selIBEA.py -> build/bdist.linux-x86_64/wheel/bluepyopt/deapext/tools creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/acc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/base.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/create_acc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/create_hoc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/efeatures.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/evaluators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/extra_features_utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/locations.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/mechanisms.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/models.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/morphologies.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/objectives.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/objectivescalculators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/parameters.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/protocols.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/recordings.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/responses.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/serializer.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/simulators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/stimuli.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples copying build/lib/bluepyopt/ephys/examples/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/simplecell.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/simple.swc -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples/simplecell creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/acc_iexpr.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/parameterscalers.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/parameterscalers creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/static copying build/lib/bluepyopt/ephys/static/arbor_mechanisms.json -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/static creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates copying build/lib/bluepyopt/ephys/templates/cell_template.jinja2 -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/_json_template.jinja2 -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/decor_acc_template.jinja2 -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2 -> build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates/acc creating build/bdist.linux-x86_64/wheel/bluepyopt/ipyp copying build/lib/bluepyopt/ipyp/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ipyp copying build/lib/bluepyopt/ipyp/bpopt_tasksdb.py -> build/bdist.linux-x86_64/wheel/bluepyopt/ipyp creating build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/biophys.py -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/cell.py -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/morphology.py -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/simulation.py -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml creating build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml -> build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms creating build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/disable_simplecell_scoop.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_bluepyopt.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_evaluators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_l5pc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_lfpy.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_parameters.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_simplecell.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_stochkv.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/test_tools.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/deapext_test_utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_algorithms.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_hype.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_optimisations.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_optimisationsCMA.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_selIBEA.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_acc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_create_acc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_create_hoc.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_evaluators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_extra_features_utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_features.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_init.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_locations.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_mechanisms.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_models.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_morphologies.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_objectives.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_parameters.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_parameterscalers.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_protocols.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_recordings.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_serializer.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_simulators.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_stimuli.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/utils.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/tests/test_ephys/testmodels/__init__.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/tests/test_ephys/testmodels/dummycells.py -> build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/_version.py -> build/bdist.linux-x86_64/wheel/bluepyopt running install_egg_info running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Copying bluepyopt.egg-info to build/bdist.linux-x86_64/wheel/bluepyopt-1.14.13-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/bluepyopt-1.14.13.dist-info/WHEEL creating '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir/pip-wheel-9n22khck/.tmp-ahj53grb/bluepyopt-1.14.13-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'bluepyopt/__init__.py' adding 'bluepyopt/_version.py' adding 'bluepyopt/api.py' adding 'bluepyopt/evaluators.py' adding 'bluepyopt/objectives.py' adding 'bluepyopt/optimisations.py' adding 'bluepyopt/parameters.py' adding 'bluepyopt/stoppingCriteria.py' adding 'bluepyopt/tools.py' adding 'bluepyopt/deapext/CMA_MO.py' adding 'bluepyopt/deapext/CMA_SO.py' adding 'bluepyopt/deapext/__init__.py' adding 'bluepyopt/deapext/algorithms.py' adding 'bluepyopt/deapext/hype.py' adding 'bluepyopt/deapext/optimisations.py' adding 'bluepyopt/deapext/optimisationsCMA.py' adding 'bluepyopt/deapext/stoppingCriteria.py' adding 'bluepyopt/deapext/utils.py' adding 'bluepyopt/deapext/tools/__init__.py' adding 'bluepyopt/deapext/tools/selIBEA.py' adding 'bluepyopt/ephys/__init__.py' adding 'bluepyopt/ephys/acc.py' adding 'bluepyopt/ephys/base.py' adding 'bluepyopt/ephys/create_acc.py' adding 'bluepyopt/ephys/create_hoc.py' adding 'bluepyopt/ephys/efeatures.py' adding 'bluepyopt/ephys/evaluators.py' adding 'bluepyopt/ephys/extra_features_utils.py' adding 'bluepyopt/ephys/locations.py' adding 'bluepyopt/ephys/mechanisms.py' adding 'bluepyopt/ephys/models.py' adding 'bluepyopt/ephys/morphologies.py' adding 'bluepyopt/ephys/objectives.py' adding 'bluepyopt/ephys/objectivescalculators.py' adding 'bluepyopt/ephys/parameters.py' adding 'bluepyopt/ephys/protocols.py' adding 'bluepyopt/ephys/recordings.py' adding 'bluepyopt/ephys/responses.py' adding 'bluepyopt/ephys/serializer.py' adding 'bluepyopt/ephys/simulators.py' adding 'bluepyopt/ephys/stimuli.py' adding 'bluepyopt/ephys/examples/__init__.py' adding 'bluepyopt/ephys/examples/simplecell/__init__.py' adding 'bluepyopt/ephys/examples/simplecell/simple.swc' adding 'bluepyopt/ephys/examples/simplecell/simplecell.py' adding 'bluepyopt/ephys/parameterscalers/__init__.py' adding 'bluepyopt/ephys/parameterscalers/acc_iexpr.py' adding 'bluepyopt/ephys/parameterscalers/parameterscalers.py' adding 'bluepyopt/ephys/static/arbor_mechanisms.json' adding 'bluepyopt/ephys/templates/cell_template.jinja2' adding 'bluepyopt/ephys/templates/acc/_json_template.jinja2' adding 'bluepyopt/ephys/templates/acc/decor_acc_template.jinja2' adding 'bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2' adding 'bluepyopt/ipyp/__init__.py' adding 'bluepyopt/ipyp/bpopt_tasksdb.py' adding 'bluepyopt/neuroml/__init__.py' adding 'bluepyopt/neuroml/biophys.py' adding 'bluepyopt/neuroml/cell.py' adding 'bluepyopt/neuroml/morphology.py' adding 'bluepyopt/neuroml/simulation.py' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml' adding 'bluepyopt/tests/__init__.py' adding 'bluepyopt/tests/disable_simplecell_scoop.py' adding 'bluepyopt/tests/test_bluepyopt.py' adding 'bluepyopt/tests/test_evaluators.py' adding 'bluepyopt/tests/test_l5pc.py' adding 'bluepyopt/tests/test_lfpy.py' adding 'bluepyopt/tests/test_parameters.py' adding 'bluepyopt/tests/test_simplecell.py' adding 'bluepyopt/tests/test_stochkv.py' adding 'bluepyopt/tests/test_tools.py' adding 'bluepyopt/tests/test_deapext/__init__.py' adding 'bluepyopt/tests/test_deapext/deapext_test_utils.py' adding 'bluepyopt/tests/test_deapext/test_algorithms.py' adding 'bluepyopt/tests/test_deapext/test_hype.py' adding 'bluepyopt/tests/test_deapext/test_optimisations.py' adding 'bluepyopt/tests/test_deapext/test_optimisationsCMA.py' adding 'bluepyopt/tests/test_deapext/test_selIBEA.py' adding 'bluepyopt/tests/test_deapext/test_stoppingCriteria.py' adding 'bluepyopt/tests/test_deapext/test_utils.py' adding 'bluepyopt/tests/test_ephys/__init__.py' adding 'bluepyopt/tests/test_ephys/test_acc.py' adding 'bluepyopt/tests/test_ephys/test_create_acc.py' adding 'bluepyopt/tests/test_ephys/test_create_hoc.py' adding 'bluepyopt/tests/test_ephys/test_evaluators.py' adding 'bluepyopt/tests/test_ephys/test_extra_features_utils.py' adding 'bluepyopt/tests/test_ephys/test_features.py' adding 'bluepyopt/tests/test_ephys/test_init.py' adding 'bluepyopt/tests/test_ephys/test_locations.py' adding 'bluepyopt/tests/test_ephys/test_mechanisms.py' adding 'bluepyopt/tests/test_ephys/test_models.py' adding 'bluepyopt/tests/test_ephys/test_morphologies.py' adding 'bluepyopt/tests/test_ephys/test_objectives.py' adding 'bluepyopt/tests/test_ephys/test_parameters.py' adding 'bluepyopt/tests/test_ephys/test_parameterscalers.py' adding 'bluepyopt/tests/test_ephys/test_protocols.py' adding 'bluepyopt/tests/test_ephys/test_recordings.py' adding 'bluepyopt/tests/test_ephys/test_serializer.py' adding 'bluepyopt/tests/test_ephys/test_simulators.py' adding 'bluepyopt/tests/test_ephys/test_stimuli.py' adding 'bluepyopt/tests/test_ephys/utils.py' adding 'bluepyopt/tests/test_ephys/testmodels/__init__.py' adding 'bluepyopt/tests/test_ephys/testmodels/dummycells.py' adding 'bluepyopt-1.14.13.dist-info/AUTHORS.txt' adding 'bluepyopt-1.14.13.dist-info/COPYING' adding 'bluepyopt-1.14.13.dist-info/COPYING.lesser' adding 'bluepyopt-1.14.13.dist-info/LICENSE.txt' adding 'bluepyopt-1.14.13.dist-info/METADATA' adding 'bluepyopt-1.14.13.dist-info/WHEEL' adding 'bluepyopt-1.14.13.dist-info/entry_points.txt' adding 'bluepyopt-1.14.13.dist-info/top_level.txt' adding 'bluepyopt-1.14.13.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for bluepyopt (pyproject.toml): finished with status 'done' Created wheel for bluepyopt: filename=bluepyopt-1.14.13-py3-none-any.whl size=208269 sha256=47bed25566d54896175d6e07aa4cea051c29c1974d8f127ccd66e11e26527883 Stored in directory: /builddir/.cache/pip/wheels/db/74/dd/c5794422a378c7b030502fa4e09d206e69d0300724c0420daa Successfully built bluepyopt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sn3hbY + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + '[' /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.13-build + mkdir /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 ++ ls /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir/bluepyopt-1.14.13-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=bluepyopt==1.14.13 + '[' -z bluepyopt==1.14.13 ']' + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir bluepyopt==1.14.13 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/pyproject-wheeldir Processing ./pyproject-wheeldir/bluepyopt-1.14.13-py3-none-any.whl Installing collected packages: bluepyopt Creating /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin/bpopt_tasksdb to 755 Successfully installed bluepyopt-1.14.13 + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin/bpopt_tasksdb /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin/bpopt_tasksdb: updating + rm -rfv /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT --record /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/RECORD --output /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/RECORD removed '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/REQUESTED removed '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.13.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-files --output-modules 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/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_parameters.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_extra_features_utils.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_mechanisms.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_init.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_features.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_parameterscalers.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_models.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_protocols.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_create_acc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_morphologies.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/ephys/__pycache__/efeatures.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_recordings.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_serializer.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_create_hoc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_evaluators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_objectives.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_stimuli.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_simulators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/disable_simplecell_scoop.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_bluepyopt.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_evaluators.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_lfpy.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_l5pc.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_parameters.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_simplecell.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_tools.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_stochkv.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_lfpy.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/disable_simplecell_scoop.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_tools.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_evaluators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_parameters.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_stochkv.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_l5pc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/__pycache__/_version.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/__pycache__/tools.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/__pycache__/parameters.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_locations.cpython-313.opt-1.pyc: replacing with normalized version Scanned 37 directories and 320 files, processed 135 inodes, 135 modified (78 replaced + 57 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-bluepyopt-1.14.13-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ieIJsL + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.13-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 + '[' '!' -f /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bluepyopt-1.14.13-build/python-bluepyopt-1.14.13-1.fc41.x86_64-pyproject-modules -e '*neuroml*' -e 'bluepyopt.tests*' Check import: bluepyopt Check import: bluepyopt.api Check import: bluepyopt.deapext Check import: bluepyopt.deapext.CMA_MO Check import: bluepyopt.deapext.CMA_SO Check import: bluepyopt.deapext.algorithms Check import: bluepyopt.deapext.hype Check import: bluepyopt.deapext.optimisations Check import: bluepyopt.deapext.optimisationsCMA Check import: bluepyopt.deapext.stoppingCriteria Check import: bluepyopt.deapext.tools Check import: bluepyopt.deapext.tools.selIBEA Check import: bluepyopt.deapext.utils Check import: bluepyopt.ephys Check import: bluepyopt.ephys.acc Check import: bluepyopt.ephys.base Check import: bluepyopt.ephys.create_acc Check import: bluepyopt.ephys.create_hoc Check import: bluepyopt.ephys.efeatures Check import: bluepyopt.ephys.evaluators Check import: bluepyopt.ephys.examples Check import: bluepyopt.ephys.examples.simplecell Check import: bluepyopt.ephys.examples.simplecell.simplecell Check import: bluepyopt.ephys.extra_features_utils Check import: bluepyopt.ephys.locations Check import: bluepyopt.ephys.mechanisms Check import: bluepyopt.ephys.models Check import: bluepyopt.ephys.morphologies Check import: bluepyopt.ephys.objectives Check import: bluepyopt.ephys.objectivescalculators Check import: bluepyopt.ephys.parameters Check import: bluepyopt.ephys.parameterscalers Check import: bluepyopt.ephys.parameterscalers.acc_iexpr Check import: bluepyopt.ephys.parameterscalers.parameterscalers Check import: bluepyopt.ephys.protocols Check import: bluepyopt.ephys.recordings Check import: bluepyopt.ephys.responses Check import: bluepyopt.ephys.serializer Check import: bluepyopt.ephys.simulators Check import: bluepyopt.ephys.stimuli Check import: bluepyopt.evaluators Check import: bluepyopt.ipyp Check import: bluepyopt.ipyp.bpopt_tasksdb Check import: bluepyopt.objectives Check import: bluepyopt.optimisations Check import: bluepyopt.parameters Check import: bluepyopt.stoppingCriteria Check import: bluepyopt.tools + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/make -O -j4 V=1 VERBOSE=1 stochkv_prepare l5pc_prepare sc_prepare meta_prepare cd examples/stochkv && ls mechanisms && nrnivmodl mechanisms StochKv.mod StochKv3.mod /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv Mod files: "mechanisms/mechanisms/StochKv.mod" "mechanisms/mechanisms/StochKv3.mod" Creating 'x86_64' directory for .o files. make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' -> NMODL ../mechanisms/StochKv.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "StochKv.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' -> NMODL ../mechanisms/StochKv3.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "StochKv3.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' -> Compiling mod_func.cpp gcc -DHAVE_CONFIG_H -I. -I/usr/include -fPIC -c mod_func.cpp -o mod_func.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' -> Compiling StochKv.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c StochKv.c -o StochKv.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' -> Compiling StochKv3.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c StochKv3.c -o StochKv3.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' => LINKING shared library ./libnrnmech.so g++ -std=c++11 -shared -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./StochKv.o ./StochKv3.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext g++ -std=c++11 -I /usr/include -I /usr/include/nrncvode -DAUTO_DLOPEN_NRNMECH=0 /usr/share/nrn/nrnmain.cpp -o ./special \ -L . -lnrnmech -L/usr/lib -lnrniv -lnrnmech -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64' Successfully created x86_64/special make[1]: warning: -j4 forced in submake: resetting jobserver mode. Translating StochKv.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64/StochKv.c Warning: bnl undefined. (declared within VERBATIM?) Warning: value undefined. (declared within VERBATIM?) Thread Safe Translating StochKv3.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/stochkv/x86_64/StochKv3.c Warning: bnl undefined. (declared within VERBATIM?) Warning: value undefined. (declared within VERBATIM?) Thread Safe cd examples/l5pc && nrnivmodl mechanisms /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc Mod files: "mechanisms/mechanisms/CaDynamics_E2.mod" "mechanisms/mechanisms/Ca_HVA.mod" "mechanisms/mechanisms/Ca_LVAst.mod" "mechanisms/mechanisms/Ih.mod" "mechanisms/mechanisms/Im.mod" "mechanisms/mechanisms/K_Pst.mod" "mechanisms/mechanisms/K_Tst.mod" "mechanisms/mechanisms/NaTa_t.mod" "mechanisms/mechanisms/NaTs2_t.mod" "mechanisms/mechanisms/Nap_Et2.mod" "mechanisms/mechanisms/SK_E2.mod" "mechanisms/mechanisms/SKv3_1.mod" Creating 'x86_64' directory for .o files. make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ca_HVA.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ca_HVA.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/CaDynamics_E2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "CaDynamics_E2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ca_LVAst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ca_LVAst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ih.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ih.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/Im.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Im.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/K_Pst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "K_Pst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/K_Tst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "K_Tst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/NaTa_t.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "NaTa_t.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/NaTs2_t.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "NaTs2_t.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/Nap_Et2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Nap_Et2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling mod_func.cpp gcc -DHAVE_CONFIG_H -I. -I/usr/include -fPIC -c mod_func.cpp -o mod_func.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/SK_E2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "SK_E2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> NMODL ../mechanisms/SKv3_1.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "SKv3_1.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling Ca_LVAst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ca_LVAst.c -o Ca_LVAst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling CaDynamics_E2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c CaDynamics_E2.c -o CaDynamics_E2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling Ih.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ih.c -o Ih.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling Im.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Im.c -o Im.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling Ca_HVA.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ca_HVA.c -o Ca_HVA.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling K_Pst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c K_Pst.c -o K_Pst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling K_Tst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c K_Tst.c -o K_Tst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling NaTa_t.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c NaTa_t.c -o NaTa_t.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling NaTs2_t.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c NaTs2_t.c -o NaTs2_t.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling Nap_Et2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Nap_Et2.c -o Nap_Et2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling SK_E2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c SK_E2.c -o SK_E2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' -> Compiling SKv3_1.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c SKv3_1.c -o SKv3_1.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' => LINKING shared library ./libnrnmech.so g++ -std=c++11 -shared -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./CaDynamics_E2.o ./Ca_HVA.o ./Ca_LVAst.o ./Ih.o ./Im.o ./K_Pst.o ./K_Tst.o ./NaTa_t.o ./NaTs2_t.o ./Nap_Et2.o ./SK_E2.o ./SKv3_1.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext g++ -std=c++11 -I /usr/include -I /usr/include/nrncvode -DAUTO_DLOPEN_NRNMECH=0 /usr/share/nrn/nrnmain.cpp -o ./special \ -L . -lnrnmech -L/usr/lib -lnrniv -lnrnmech -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64' Successfully created x86_64/special make[1]: warning: -j4 forced in submake: resetting jobserver mode. Translating Ca_HVA.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/Ca_HVA.c Thread Safe Translating CaDynamics_E2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/CaDynamics_E2.c Thread Safe Translating Ca_LVAst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/Ca_LVAst.c Thread Safe Translating Ih.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/Ih.c Thread Safe Translating Im.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/Im.c Thread Safe Translating K_Pst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/K_Pst.c Thread Safe Translating K_Tst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/K_Tst.c Thread Safe Translating NaTa_t.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/NaTa_t.c Thread Safe Translating NaTs2_t.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/NaTs2_t.c Thread Safe Translating Nap_Et2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/Nap_Et2.c Thread Safe Translating SK_E2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/SK_E2.c Thread Safe Translating SKv3_1.mod into /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/examples/l5pc/x86_64/SKv3_1.c Thread Safe cd examples/metaparameters && \ jupyter nbconvert --to python metaparameters.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' metaparameters.py >metaparameters.tmp && \ mv metaparameters.tmp metaparameters.py [NbConvertApp] Converting notebook metaparameters.ipynb to python [NbConvertApp] Writing 9314 bytes to metaparameters.py cd examples/simplecell && \ jupyter nbconvert --to python simplecell.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' simplecell.py >simplecell.tmp && \ mv simplecell.tmp simplecell.py && \ jupyter nbconvert --to python simplecell_arbor.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' simplecell_arbor.py >simplecell_arbor.tmp && \ mv simplecell_arbor.tmp simplecell_arbor.py [NbConvertApp] Converting notebook simplecell.ipynb to python [NbConvertApp] Writing 10724 bytes to simplecell.py [NbConvertApp] Converting notebook simplecell_arbor.ipynb to python [NbConvertApp] Writing 10785 bytes to simplecell_arbor.py cd examples/l5pc && \ jupyter nbconvert --to python L5PC.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d;/neurom/d;/axes/d;/fig/d;/for index/d' L5PC.py >L5PC.tmp && \ mv L5PC.tmp L5PC.py && \ python3 l5pc_validate_neuron_arbor_pm.py --prepare-only --regions somatic --param-values ../../bluepyopt/tests/testdata/l5pc_validate_neuron_arbor/param_values.json && \ jupyter nbconvert --to python l5pc_validate_neuron_arbor_somatic.ipynb && \ sed '/get_ipython/d;/plt\./d;/import matplotlib/d;/from IPython.display/d;/multiprocessing/d;s/pool.map/map/g;s/# test_l5pc: insert //g;/# test_l5pc: skip/d' l5pc_validate_neuron_arbor_somatic.py >l5pc_validate_neuron_arbor_somatic.tmp && \ mv l5pc_validate_neuron_arbor_somatic.tmp l5pc_validate_neuron_arbor_somatic.py [NbConvertApp] Converting notebook L5PC.ipynb to python [NbConvertApp] Writing 9158 bytes to L5PC.py INFO:numexpr.utils:NumExpr defaulting to 4 threads. INFO:root:Outputting l5pc_validate_neuron_arbor notebook to ./l5pc_validate_neuron_arbor_somatic.ipynb with all local mechs/params... mechs = {'all': ['pas'], 'somatic': ['NaTs2_t', 'SKv3_1', 'SK_E2', 'CaDynamics_E2', 'Ca_HVA', 'Ca_LVAst', 'Ih']} extra_params = {'v_init': 'global', 'celsius': 'global', 'g_pas': ['all'], 'e_pas': ['all'], 'cm': ['all'], 'Ra': ['all'], 'ena': ['somatic'], 'ek': ['somatic']} INFO:papermill:Input Notebook: l5pc_validate_neuron_arbor.ipynb INFO:papermill:Output Notebook: ./l5pc_validate_neuron_arbor_somatic.ipynb [NbConvertApp] Converting notebook l5pc_validate_neuron_arbor_somatic.ipynb to python [NbConvertApp] Writing 24826 bytes to l5pc_validate_neuron_arbor_somatic.py + k='not test_metaparameter' + k='not test_metaparameter and not test_NrnRampPulse_instantiate' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate and not test_write_acc_expsyn' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest bluepyopt/tests/ -v -m 'unit and not neuroml' '-k not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate and not test_write_acc_expsyn' ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3 configfile: pytest.ini collecting ... collected 183 items / 20 deselected / 163 selected bluepyopt/tests/test_bluepyopt.py::test_import PASSED [ 0%] bluepyopt/tests/test_deapext/test_algorithms.py::test_eaAlphaMuPlusLambdaCheckpoint PASSED [ 1%] bluepyopt/tests/test_deapext/test_algorithms.py::test_eaAlphaMuPlusLambdaCheckpoint_with_checkpoint PASSED [ 1%] bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorExact PASSED [ 2%] bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorSampled PASSED [ 3%] bluepyopt/tests/test_deapext/test_optimisations.py::test_DEAPOptimisation_constructor PASSED [ 3%] bluepyopt/tests/test_deapext/test_optimisations.py::test_IBEADEAPOptimisation_constructor PASSED [ 4%] bluepyopt/tests/test_deapext/test_optimisations.py::test_selectorname PASSED [ 4%] bluepyopt/tests/test_deapext/test_optimisationsCMA.py::test_optimisationsCMA_normspace 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bluepyopt/tests/test_parameters.py::test_MetaListEqualParameter_freeze_unfreeze PASSED [ 98%] bluepyopt/tests/test_parameters.py::test_MetaListEqualParamete_str PASSED [ 98%] bluepyopt/tests/test_tools.py::test_load PASSED [ 99%] bluepyopt/tests/test_tools.py::test_uint32_seed PASSED [100%] =================================== FAILURES =================================== _______________ test_cell_model_write_and_read_acc_replace_axon ________________ @pytest.mark.unit def test_cell_model_write_and_read_acc_replace_axon(): """ephys.create_acc: Test write_acc and read_acc w/ axon replacement""" cell = make_cell(replace_axon=True) param_values = {"gnabar_hh": 0.1, "gkbar_hh": 0.03} with tempfile.TemporaryDirectory() as acc_dir: try: nrn_sim = ephys.simulators.NrnSimulator() > cell.write_acc(acc_dir, param_values, sim=nrn_sim) bluepyopt/tests/test_ephys/test_create_acc.py:583: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:424: in write_acc create_acc.write_acc(output_dir, self, param_values, bluepyopt/ephys/create_acc.py:878: in write_acc output = cell.create_acc( bluepyopt/ephys/models.py:398: in create_acc self.instantiate_morphology_3d(sim=sim) bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = simple_ax2[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError During handling of the above exception, another exception occurred: @pytest.mark.unit def test_cell_model_write_and_read_acc_replace_axon(): """ephys.create_acc: Test write_acc and read_acc w/ axon replacement""" cell = make_cell(replace_axon=True) param_values = {"gnabar_hh": 0.1, "gkbar_hh": 0.03} with tempfile.TemporaryDirectory() as acc_dir: try: nrn_sim = ephys.simulators.NrnSimulator() cell.write_acc(acc_dir, param_values, sim=nrn_sim) except Exception as e: # fail with an older Arbor version > assert isinstance(e, NotImplementedError) E AssertionError: assert False E + where False = isinstance(TypeError('Not an iterable HocObject'), NotImplementedError) bluepyopt/tests/test_ephys/test_create_acc.py:585: AssertionError ____________________________ test_write_acc_simple _____________________________ @pytest.mark.unit def test_write_acc_simple(): SIMPLECELL_PATH = str( ( pathlib.Path(__file__).parent / "../../../examples/simplecell" ).resolve() ) sys.path.insert(0, SIMPLECELL_PATH) ref_dir = (testdata_dir / "acc/simplecell").resolve() old_cwd = os.getcwd() try: os.chdir(SIMPLECELL_PATH) import simplecell_model param_values = { "gnabar_hh": 0.10299326453483033, "gkbar_hh": 0.027124836082684685, } cell = simplecell_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() > cell.instantiate_morphology_3d(nrn_sim) bluepyopt/tests/test_ephys/test_create_acc.py:691: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = simple_cell[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError _____________________________ test_write_acc_l5pc ______________________________ @pytest.mark.unit def test_write_acc_l5pc(): L5PC_PATH = str( (pathlib.Path(__file__).parent / "../../../examples/l5pc").resolve() ) sys.path.insert(0, L5PC_PATH) ref_dir = (testdata_dir / "acc/l5pc").resolve() old_cwd = os.getcwd() try: import l5pc_model param_values = { "gNaTs2_tbar_NaTs2_t.apical": 0.026145, "gSKv3_1bar_SKv3_1.apical": 0.004226, "gImbar_Im.apical": 0.000143, "gNaTa_tbar_NaTa_t.axonal": 3.137968, "gK_Tstbar_K_Tst.axonal": 0.089259, "gamma_CaDynamics_E2.axonal": 0.002910, "gNap_Et2bar_Nap_Et2.axonal": 0.006827, "gSK_E2bar_SK_E2.axonal": 0.007104, "gCa_HVAbar_Ca_HVA.axonal": 0.000990, "gK_Pstbar_K_Pst.axonal": 0.973538, "gSKv3_1bar_SKv3_1.axonal": 1.021945, "decay_CaDynamics_E2.axonal": 287.198731, "gCa_LVAstbar_Ca_LVAst.axonal": 0.008752, "gamma_CaDynamics_E2.somatic": 0.000609, "gSKv3_1bar_SKv3_1.somatic": 0.303472, "gSK_E2bar_SK_E2.somatic": 0.008407, "gCa_HVAbar_Ca_HVA.somatic": 0.000994, "gNaTs2_tbar_NaTs2_t.somatic": 0.983955, "decay_CaDynamics_E2.somatic": 210.485284, "gCa_LVAstbar_Ca_LVAst.somatic": 0.000333, } cell = l5pc_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() > cell.instantiate_morphology_3d(nrn_sim) bluepyopt/tests/test_ephys/test_create_acc.py:750: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = l5pc[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError During handling of the above exception, another exception occurred: @pytest.mark.unit def test_write_acc_l5pc(): L5PC_PATH = str( (pathlib.Path(__file__).parent / "../../../examples/l5pc").resolve() ) sys.path.insert(0, L5PC_PATH) ref_dir = (testdata_dir / "acc/l5pc").resolve() old_cwd = os.getcwd() try: import l5pc_model param_values = { "gNaTs2_tbar_NaTs2_t.apical": 0.026145, "gSKv3_1bar_SKv3_1.apical": 0.004226, "gImbar_Im.apical": 0.000143, "gNaTa_tbar_NaTa_t.axonal": 3.137968, "gK_Tstbar_K_Tst.axonal": 0.089259, "gamma_CaDynamics_E2.axonal": 0.002910, "gNap_Et2bar_Nap_Et2.axonal": 0.006827, "gSK_E2bar_SK_E2.axonal": 0.007104, "gCa_HVAbar_Ca_HVA.axonal": 0.000990, "gK_Pstbar_K_Pst.axonal": 0.973538, "gSKv3_1bar_SKv3_1.axonal": 1.021945, "decay_CaDynamics_E2.axonal": 287.198731, "gCa_LVAstbar_Ca_LVAst.axonal": 0.008752, "gamma_CaDynamics_E2.somatic": 0.000609, "gSKv3_1bar_SKv3_1.somatic": 0.303472, "gSK_E2bar_SK_E2.somatic": 0.008407, "gCa_HVAbar_Ca_HVA.somatic": 0.000994, "gNaTs2_tbar_NaTs2_t.somatic": 0.983955, "decay_CaDynamics_E2.somatic": 210.485284, "gCa_LVAstbar_Ca_LVAst.somatic": 0.000333, } cell = l5pc_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() cell.instantiate_morphology_3d(nrn_sim) with tempfile.TemporaryDirectory() as test_dir: cell.write_acc( test_dir, param_values, # ext_catalogues=ext_catalogues, create_mod_morph=True, ) check_acc_dir(test_dir, ref_dir) except Exception as e: # fail with an older Arbor version > assert isinstance(e, NotImplementedError) E AssertionError: assert False E + where False = isinstance(TypeError('Not an iterable HocObject'), NotImplementedError) bluepyopt/tests/test_ephys/test_create_acc.py:762: AssertionError _________________________ test_CellEvaluator_evaluate __________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 204, in _run_func cell_model.instantiate(sim=sim) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/models.py", line 256, in instantiate self.instantiate_morphology(sim) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/models.py", line 241, in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/morphologies.py", line 158, in instantiate self.replace_axon(sim=sim, icell=icell) ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/morphologies.py", line 178, in replace_axon nsec = len([sec for sec in icell.axonal]) ^^^^^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_CellEvaluator_evaluate(): """ephys.evaluators: Test CellEvaluator evaluate""" sim = ephys.simulators.NrnSimulator() simple_morph = ephys.morphologies.NrnFileMorphology( simple_morphology_path, do_replace_axon=True) all_loc = ephys.locations.NrnSeclistLocation('all', 'all') cm = ephys.parameters.NrnRangeParameter( name='cm', param_name='cm', bounds=[.5, 1.5], locations=[all_loc]) cell_model = ephys.models.CellModel('CellModel', morph=simple_morph, mechs=[], params=[cm]) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.1, step_delay=100.0, step_duration=100, total_duration=200, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma]) mean = -65 efeature = ephys.efeatures.eFELFeature(name='test_eFELFeature', efel_feature_name='voltage_base', recording_names={'': 'soma.v'}, stim_start=100.0, stim_end=200.0, exp_mean=-65, exp_std=1) s_obj = ephys.objectives.SingletonObjective( 'singleton', feature=efeature) fitness_calc = ephys.objectivescalculators.ObjectivesCalculator( objectives=[s_obj]) evaluator = ephys.evaluators.CellEvaluator( cell_model=cell_model, param_names=['cm'], fitness_calculator=fitness_calc, fitness_protocols={'sweep': protocol}, sim=sim) > responses = protocol.run(cell_model, {'cm': 1.0}, sim=sim) bluepyopt/tests/test_ephys/test_evaluators.py:113: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _________________ TestNrnSeclistCompLocation.test_instantiate __________________ self = def test_instantiate(self): """ephys.locations.NrnSeclistCompLocation: test instantiate""" # Create a little test class with a soma and two dendritic sections class Cell(object): """Cell class""" pass cell = Cell() soma = self.sim.neuron.h.Section() dend1 = self.sim.neuron.h.Section(name="dend1") dend2 = self.sim.neuron.h.Section(name="dend2") cell.somatic = self.sim.neuron.h.SectionList() cell.somatic.append(soma) cell.basal = self.sim.neuron.h.SectionList() cell.basal.append(dend1) cell.basal.append(dend2) > soma_comp = self.loc.instantiate(sim=self.sim, icell=cell) bluepyopt/tests/test_ephys/test_locations.py:115: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fbc81279550> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError ____________ TestNrnTrunkSomaDistanceCompLocation.test_instantiate _____________ self = def test_instantiate(self): """ephys.locations.NrnSomaDistanceCompLocation: test instantiate""" # Create a little test class with a soma and two dendritic sections class Cell(object): """Cell class""" pass cell = Cell() soma = self.sim.neuron.h.Section(name="soma[0]") cell.soma = [soma] cell.testdend = self.sim.neuron.h.SectionList() dend1 = self.sim.neuron.h.Section(name="dend[0]") dend2 = self.sim.neuron.h.Section(name="dend[1]") dend3 = self.sim.neuron.h.Section(name="dend[2]") dend4 = self.sim.neuron.h.Section(name="dend[3]") dend5 = self.sim.neuron.h.Section(name="dend[4]") cell.testdend.append(sec=dend1) cell.testdend.append(sec=dend2) cell.testdend.append(sec=dend3) cell.testdend.append(sec=dend4) cell.testdend.append(sec=dend5) x0 = self.sim.neuron.h.Vector([0] * 10) d = self.sim.neuron.h.Vector([1] * 10) x1 = self.sim.neuron.h.Vector(np.linspace(0, 100, 10)) self.sim.neuron.h.pt3dadd(x0, x1, x0, d, sec=dend1) x2 = self.sim.neuron.h.Vector(np.linspace(100, 200, 10)) self.sim.neuron.h.pt3dadd(x0, x2, x0, d, sec=dend2) x3 = self.sim.neuron.h.Vector(np.linspace(200, 300, 10)) self.sim.neuron.h.pt3dadd(x0, x3, x0, d, sec=dend3) x4 = self.sim.neuron.h.Vector(np.linspace(300, 400, 10)) self.sim.neuron.h.pt3dadd(x0, x4, x0, d, sec=dend4) x5 = self.sim.neuron.h.Vector(np.linspace(400, 500, 10)) self.sim.neuron.h.pt3dadd(x0, x5, x0, d, sec=dend5) dend1.connect(soma(0.5), 0.0) dend2.connect(dend1(1.0), 0.0) dend3.connect(dend1(1.0), 0.0) dend4.connect(dend3(1.0), 0.0) dend5.connect(dend4(1.0), 0.0) > comp = self.loc.instantiate(sim=self.sim, icell=cell) bluepyopt/tests/test_ephys/test_locations.py:325: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/locations.py:537: in instantiate self.set_sec_index(icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = icell = .Cell object at 0x7fbc80e5a510> def set_sec_index(self, icell=None): """Search for the point furthest away along given direction.""" points = np.array( [ [ section.x3d(section.n3d() - 1), section.y3d(section.n3d() - 1), section.z3d(section.n3d() - 1), ] > for section in getattr(icell, self.seclist_name) ] ) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:521: TypeError ___________________________ test_nrnmod_instantiate ____________________________ @pytest.mark.unit def test_nrnmod_instantiate(): """ephys.mechanisms: Testing insert mechanism""" test_mech = ephys.mechanisms.NrnMODMechanism( 'test.pas', suffix='pas', locations=[simplecell.somatic_loc]) assert str(test_mech) == "test.pas: pas at ['somatic']" > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:44: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError ___________________________ test_nrnmod_determinism ____________________________ @pytest.mark.unit def test_nrnmod_determinism(): """ephys.mechanisms: Testing determinism""" test_mech = ephys.mechanisms.NrnMODMechanism( 'pas', suffix='pas', deterministic=False, locations=[simplecell.somatic_loc]) > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:146: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError __________________________ test_pprocess_instantiate ___________________________ @pytest.mark.unit def test_pprocess_instantiate(): """ephys.mechanisms: Testing insert point process""" test_pprocess = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[simplecell.somacenter_loc]) assert ( str(test_pprocess) == "expsyn: ExpSyn at ['somatic[0](0.5)']") > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:171: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError _____________________ test_nrnfilemorphology_replace_axon ______________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon(): """ephys.morphologies: testing NrnFileMorphology replace_axon""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_replace') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:69: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_replace[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ___________________ test_nrnfilemorphology_replace_axon_ax1 ____________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon_ax1(): """ephys.morphologies: testing NrnFileMorphology replace_axon with ax1""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_ax1_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_ax1') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:93: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_ax1[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ___________________ test_nrnfilemorphology_replace_axon_ax2 ____________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon_ax2(): """ephys.morphologies: testing NrnFileMorphology replace_axon with ax2""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_ax2_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_ax2') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_ax2[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ________________________ test_pprocessparam_instantiate ________________________ @pytest.mark.unit def test_pprocessparam_instantiate(): """ephys.parameters: Testing point process parameter""" simplecell = bluepyopt.ephys.examples.simplecell.SimpleCell() simple_cell = simplecell.cell_model simple_cell.freeze(simplecell.default_param_values) sim = simplecell.nrn_sim expsyn_mech = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[simplecell.somacenter_loc]) expsyn_loc = ephys.locations.NrnPointProcessLocation( 'expsyn_loc', pprocess_mech=expsyn_mech) expsyn_tau_param = ephys.parameters.NrnPointProcessParameter( name='expsyn_tau', param_name='tau', value=2, locations=[expsyn_loc]) simple_cell.mechanisms.append(expsyn_mech) simple_cell.params[expsyn_tau_param.name] = expsyn_tau_param > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_parameters.py:42: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError ____________________________ test_distloc_exception ____________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_distloc_exception(): """ephys.protocols: test if protocol raise dist loc exception""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) dend_loc = ephys.locations.NrnSomaDistanceCompLocation( name='dend_loc', soma_distance=800, seclist_name='apical') rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_dend = ephys.recordings.CompRecording( name='dend.v', location=dend_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[ rec_soma, rec_dend]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim) bluepyopt/tests/test_ephys/test_protocols.py:71: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException __________________________ test_sequenceprotocol_run ___________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sequenceprotocol_run(): """ephys.protocols: Test SequenceProtocol run""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) sweep_protocol = ephys.protocols.SweepProtocol( name='sweep_prot', stimuli=[stim], recordings=[rec_soma]) seq_protocol = ephys.protocols.SequenceProtocol( name='seq_prot', protocols=[sweep_protocol]) > responses = seq_protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim) bluepyopt/tests/test_ephys/test_protocols.py:221: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:89: in run response = protocol.run( bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException ______________________ test_sweepprotocol_run_unisolated _______________________ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) > self.instantiate(sim=sim, cell_model=cell_model) bluepyopt/ephys/protocols.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:314: in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) bluepyopt/ephys/stimuli.py:258: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fbc80e5ae40> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sweepprotocol_run_unisolated(): """ephys.protocols: Test SweepProtocol unisolated run""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) unknown_loc = ephys.locations.NrnSomaDistanceCompLocation( name='unknown_loc', seclist_name='somatic', soma_distance=100) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_unknown = ephys.recordings.CompRecording( name='unknown.v', location=unknown_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma, rec_unknown]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=False) bluepyopt/tests/test_ephys/test_protocols.py:354: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:302: in run responses = self._run_func(cell_model=cell_model, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) self.instantiate(sim=sim, cell_model=cell_model) try: if isinstance(sim, LFPySimulator): sim.run( lfpy_cell=cell_model.lfpy_cell, lfpy_electrode=cell_model.lfpy_electrode, tstop=self.total_duration, cvode_active=self.cvode_active) else: sim.run( self.total_duration, cvode_active=self.cvode_active ) except (RuntimeError, simulators.NrnSimulatorException): logger.debug( 'SweepProtocol: Running of parameter set {%s} generated ' 'an exception, returning None in responses', str(param_values)) responses = {recording.name: None for recording in self.recordings} else: responses = { recording.name: recording.response for recording in self.recordings} self.destroy(sim=sim) cell_model.destroy(sim=sim) cell_model.unfreeze(param_values.keys()) return responses except BaseException as e: > raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol bluepyopt/ephys/protocols.py:239: SweepProtocolException _______________________ test_sweepprotocol_run_isolated ________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sweepprotocol_run_isolated(): """ephys.protocols: Test SweepProtocol isolated run""" nrn_sim = ephys.simulators.NrnSimulator(dt=0.1) dummy_cell = dummycells.DummyCellModel1() soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) unknown_loc = ephys.locations.NrnSomaDistanceCompLocation( name='unknown_loc', seclist_name='somatic', soma_distance=100) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_unknown = ephys.recordings.CompRecording( name='unknown.v', location=unknown_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma, rec_unknown]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=True) bluepyopt/tests/test_ephys/test_protocols.py:405: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _________________________ test_nrnsimulator_exception __________________________ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) > self.instantiate(sim=sim, cell_model=cell_model) bluepyopt/ephys/protocols.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:314: in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) bluepyopt/ephys/stimuli.py:258: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fbc80b7d940> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError The above exception was the direct cause of the following exception: @pytest.mark.unit def test_nrnsimulator_exception(): """ephys.protocols: test if protocol raise nrn sim exception""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma]) nrn_sim.run = run_RuntimeError > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=False) bluepyopt/tests/test_ephys/test_protocols.py:450: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:302: in run responses = self._run_func(cell_model=cell_model, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) self.instantiate(sim=sim, cell_model=cell_model) try: if isinstance(sim, LFPySimulator): sim.run( lfpy_cell=cell_model.lfpy_cell, lfpy_electrode=cell_model.lfpy_electrode, tstop=self.total_duration, cvode_active=self.cvode_active) else: sim.run( self.total_duration, cvode_active=self.cvode_active ) except (RuntimeError, simulators.NrnSimulatorException): logger.debug( 'SweepProtocol: Running of parameter set {%s} generated ' 'an exception, returning None in responses', str(param_values)) responses = {recording.name: None for recording in self.recordings} else: responses = { recording.name: recording.response for recording in self.recordings} self.destroy(sim=sim) cell_model.destroy(sim=sim) cell_model.unfreeze(param_values.keys()) return responses except BaseException as e: > raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol bluepyopt/ephys/protocols.py:239: SweepProtocolException _______________________ test_nrnsimulator_cvode_minstep ________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 204, in _run_func cell_model.instantiate(sim=sim) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/models.py", line 260, in instantiate mechanism.instantiate(sim=sim, icell=self.icell) ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/mechanisms.py", line 101, in instantiate for isec in isec_list: ^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/locations.py", line 243, in return (isection for isection in isectionlist) ^^^^^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_nrnsimulator_cvode_minstep(): """ephys.simulators: test if NrnSimulator constructor works""" # Check with minstep specified neuron_sim = ephys.simulators.NrnSimulator() assert neuron_sim.cvode.minstep() == 0.0 assert neuron_sim.cvode_minstep == 0.0 # Check default minstep before and after run neuron_sim = ephys.simulators.NrnSimulator(cvode_minstep=0.01) assert neuron_sim.cvode.minstep() == 0.0 neuron_sim.run(tstop=10) assert neuron_sim.cvode.minstep() == 0.0 # Check with that minstep is set back to the original value after run neuron_sim = ephys.simulators.NrnSimulator(cvode_minstep=0.0) neuron_sim.cvode_minstep = 0.05 assert neuron_sim.cvode.minstep() == 0.05 neuron_sim.run(tstop=10) assert neuron_sim.cvode.minstep() == 0.05 # Check that the minstep is effective cvode_minstep = 0.012 params = { "gnabar_hh": 0.10299326453483033, "gkbar_hh": 0.027124836082684685, } simplecell = examples.simplecell.SimpleCell() evaluator = simplecell.cell_evaluator evaluator.cell_model.unfreeze(params.keys()) evaluator.sim = ephys.simulators.NrnSimulator(cvode_minstep=cvode_minstep) > responses = evaluator.run_protocols( protocols=evaluator.fitness_protocols.values(), param_values=params ) bluepyopt/tests/test_ephys/test_simulators.py:92: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/evaluators.py:177: in run_protocols responses.update(self.run_protocol( bluepyopt/ephys/evaluators.py:155: in run_protocol return protocol.run( bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _____________________ test_NrnNetStimStimulus_instantiate ______________________ @pytest.mark.unit def test_NrnNetStimStimulus_instantiate(): """ephys.stimuli: test if NrnNetStimStimulus instantiate works""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() icell = dummy_cell.instantiate(sim=nrn_sim) somacenter_loc = ephys.locations.NrnSeclistCompLocation( name=None, seclist_name='somatic', sec_index=0, comp_x=.5) expsyn_mech = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[somacenter_loc]) > expsyn_mech.instantiate(sim=nrn_sim, icell=icell) bluepyopt/tests/test_ephys/test_stimuli.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/mechanisms.py:308: in instantiate icomp = location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fbc80b7dd30> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError ___________________ test_NrnCurrentPlayStimulus_instantiate ____________________ @pytest.mark.unit def test_NrnCurrentPlayStimulus_instantiate(): """ephys.stimuli: test if NrnNetStimStimulus instantiate works""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() icell = dummy_cell.instantiate(sim=nrn_sim) somacenter_loc = ephys.locations.NrnSeclistCompLocation( name=None, seclist_name='somatic', sec_index=0, comp_x=.5) time_points = [10, 50] current_points = [0.1, 0.2] current_stim = ephys.stimuli.NrnCurrentPlayStimulus( time_points=time_points, current_points=current_points, location=somacenter_loc) assert current_stim.time_points == time_points assert current_stim.current_points == current_points assert str(current_stim) == 'Current play at somatic[0](0.5)' > current_stim.instantiate(sim=nrn_sim, icell=icell) bluepyopt/tests/test_ephys/test_stimuli.py:120: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/stimuli.py:88: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fbc80e5ae40> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError =============================== warnings summary =============================== bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorExact /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/deapext/hype.py:71: RuntimeWarning: divide by zero encountered in divide alpha.append(numpy.prod((k - j) / (Ps - j) / i)) bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorSampled /builddir/build/BUILD/python-bluepyopt-1.14.13-build/BluePyOpt-4fcf47a075ecbe2aa967040d297d0131339a75e3/bluepyopt/deapext/hype.py:101: RuntimeWarning: divide by zero encountered in divide alpha.append(numpy.prod((k - j) / (nrP - j) / i)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_cell_model_write_and_read_acc_replace_axon FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_write_acc_simple FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_write_acc_l5pc - A... FAILED bluepyopt/tests/test_ephys/test_evaluators.py::test_CellEvaluator_evaluate FAILED bluepyopt/tests/test_ephys/test_locations.py::TestNrnSeclistCompLocation::test_instantiate FAILED bluepyopt/tests/test_ephys/test_locations.py::TestNrnTrunkSomaDistanceCompLocation::test_instantiate FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_nrnmod_instantiate FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_nrnmod_determinism FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_pprocess_instantiate FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon_ax1 FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon_ax2 FAILED bluepyopt/tests/test_ephys/test_parameters.py::test_pprocessparam_instantiate FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_distloc_exception FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sequenceprotocol_run FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sweepprotocol_run_unisolated FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sweepprotocol_run_isolated FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_nrnsimulator_exception FAILED bluepyopt/tests/test_ephys/test_simulators.py::test_nrnsimulator_cvode_minstep FAILED bluepyopt/tests/test_ephys/test_stimuli.py::test_NrnNetStimStimulus_instantiate FAILED bluepyopt/tests/test_ephys/test_stimuli.py::test_NrnCurrentPlayStimulus_instantiate ========== 21 failed, 142 passed, 20 deselected, 2 warnings in 6.22s =========== error: Bad exit status from /var/tmp/rpm-tmp.ieIJsL (%check) Bad exit status from /var/tmp/rpm-tmp.ieIJsL (%check) RPM build errors: Finish: rpmbuild python-bluepyopt-1.14.13-1.fc41.src.rpm Finish: build phase for python-bluepyopt-1.14.13-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1736363797.837158/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-bluepyopt-1.14.13-1.fc41.src.rpm) Config(fedora-41-x86_64) 0 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 3564ddf2fd9347708eb8f78544ae479d -D /var/lib/mock/fedora-41-x86_64-1736363797.837158/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.6eq_nmyv:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/python-bluepyopt.spec' Copr build error: Build failed