Warning: Permanently added '52.71.219.131' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5515581 --chroot fedora-rawhide-x86_64 --detached Version: 0.64 PID: 33220 Logging PID: 33221 Task: {'appstream': False, 'background': True, 'build_id': 5515581, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'c3055affc6bc619e6a4bb0c13c3f0a4ba89a773c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/lxml-stripped:custom:isolated/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-4', 'project_dirname': 'lxml-stripped:custom:isolated', 'project_name': 'lxml-stripped', 'project_owner': 'churchyard', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/lxml-stripped/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'churchyard/lxml-stripped--churchyard', 'source_json': {}, 'source_type': None, 'submitter': 'churchyard', 'tags': [], 'task_id': '5515581-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/churchyard/lxml-stripped:custom:isolated/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/lxml-stripped:custom:isolated/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn'... Running: git checkout c3055affc6bc619e6a4bb0c13c3f0a4ba89a773c cmd: ['git', 'checkout', 'c3055affc6bc619e6a4bb0c13c3f0a4ba89a773c'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn rc: 0 stdout: stderr: Note: switching to 'c3055affc6bc619e6a4bb0c13c3f0a4ba89a773c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at c3055af automatic import of smoldyn Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/lxml-stripped:custom:isolated/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 92.0M 100 92.0M 0 0 30.5M 0 0:00:03 0:00:03 --:--:-- 30.5M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1676050893.978023 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1676050893.978023/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 61 kB/s | 4.6 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 147 MB/s | 63 MB 00:00 fedora 42 MB/s | 66 MB 00:01 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing: dnf noarch 4.14.0-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 467 k dnf-plugins-core noarch 4.3.1-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33 k Installing dependencies: alternatives x86_64 1.21-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k audit-libs x86_64 3.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117 k basesystem noarch 11-15.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.0 k 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 431 k xz-libs x86_64 5.4.1-1.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zchunk-libs x86_64 1.2.3-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51 k zlib x86_64 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k Transaction Summary ======================================================================================================================================== Install 137 Packages Total download size: 56 M Installed size: 200 M Downloading Packages: (1/137): alternatives-1.21-2.fc38.x86_64.rpm 576 kB/s | 38 kB 00:00 (2/137): audit-libs-3.1-2.fc39.x86_64.rpm 1.6 MB/s | 117 kB 00:00 (3/137): basesystem-11-15.fc38.noarch.rpm 97 kB/s | 7.0 kB 00:00 (4/137): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 9.9 MB/s | 41 kB 00:00 (5/137): ca-certificates-2023.2.60-2.fc38.noarc 52 MB/s | 845 kB 00:00 (6/137): bash-5.2.15-3.fc38.x86_64.rpm 66 MB/s | 1.8 MB 00:00 (7/137): coreutils-9.1-11.fc38.x86_64.rpm 55 MB/s | 1.1 MB 00:00 (8/137): crypto-policies-20221215-2.gita4c31a3. 16 MB/s | 63 kB 00:00 (9/137): curl-7.87.0-4.fc38.x86_64.rpm 42 MB/s | 347 kB 00:00 (10/137): dbus-libs-1.14.6-1.fc38.x86_64.rpm 28 MB/s | 156 kB 00:00 (11/137): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.r 58 MB/s | 794 kB 00:00 (12/137): dnf-data-4.14.0-2.fc38.noarch.rpm 10 MB/s | 40 kB 00:00 (13/137): coreutils-common-9.1-11.fc38.x86_64.r 65 MB/s | 2.0 MB 00:00 (14/137): dnf-4.14.0-2.fc38.noarch.rpm 39 MB/s | 467 kB 00:00 (15/137): elfutils-default-yama-scope-0.188-5.f 3.0 MB/s | 16 kB 00:00 (16/137): dnf-plugins-core-4.3.1-2.fc38.noarch. 3.3 MB/s | 33 kB 00:00 (17/137): elfutils-libelf-0.188-5.fc38.x86_64.r 34 MB/s | 197 kB 00:00 (18/137): expat-2.5.0-2.fc38.x86_64.rpm 28 MB/s | 110 kB 00:00 (19/137): elfutils-libs-0.188-5.fc38.x86_64.rpm 43 MB/s | 259 kB 00:00 (20/137): fedora-gpg-keys-39-0.1.noarch.rpm 25 MB/s | 116 kB 00:00 (21/137): fedora-release-39-0.1.noarch.rpm 3.4 MB/s | 12 kB 00:00 (22/137): fedora-release-identity-basic-39-0.1. 4.3 MB/s | 13 kB 00:00 (23/137): fedora-repos-39-0.1.noarch.rpm 3.5 MB/s | 9.4 kB 00:00 (24/137): fedora-release-common-39-0.1.noarch.r 3.3 MB/s | 22 kB 00:00 (25/137): fedora-repos-rawhide-39-0.1.noarch.rp 2.6 MB/s | 9.0 kB 00:00 (26/137): findutils-4.9.0-3.fc38.x86_64.rpm 50 MB/s | 483 kB 00:00 (27/137): file-libs-5.44-2.fc39.x86_64.rpm 49 MB/s | 730 kB 00:00 (28/137): filesystem-3.18-3.fc38.x86_64.rpm 62 MB/s | 1.1 MB 00:00 (29/137): gdbm-libs-1.23-3.fc38.x86_64.rpm 10 MB/s | 56 kB 00:00 (30/137): gawk-5.1.1-5.fc38.x86_64.rpm 54 MB/s | 1.0 MB 00:00 (31/137): glibc-common-2.37-1.fc38.x86_64.rpm 26 MB/s | 308 kB 00:00 (32/137): glibc-minimal-langpack-2.37-1.fc38.x8 9.4 MB/s | 35 kB 00:00 (33/137): glibc-2.37-1.fc38.x86_64.rpm 71 MB/s | 2.1 MB 00:00 (34/137): gmp-6.2.1-4.fc38.x86_64.rpm 35 MB/s | 313 kB 00:00 (35/137): glib2-2.74.1-3.fc38.x86_64.rpm 63 MB/s | 2.7 MB 00:00 (36/137): gpgme-1.17.1-3.fc38.x86_64.rpm 35 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00:00 (67/137): libnghttp2-1.51.0-2.fc38.x86_64.rpm 17 MB/s | 75 kB 00:00 (68/137): libmount-2.38.1-4.fc38.x86_64.rpm 21 MB/s | 135 kB 00:00 (69/137): libnsl2-2.0.0-5.fc38.x86_64.rpm 9.7 MB/s | 30 kB 00:00 (70/137): libpsl-0.21.2-2.fc38.x86_64.rpm 19 MB/s | 65 kB 00:00 (71/137): librepo-1.15.1-2.fc38.x86_64.rpm 22 MB/s | 96 kB 00:00 (72/137): libreport-filesystem-2.17.6-2.fc38.no 4.4 MB/s | 14 kB 00:00 (73/137): libsemanage-3.5-0.rc2.1.fc38.1.x86_64 30 MB/s | 120 kB 00:00 (74/137): libselinux-3.5-0.rc2.1.fc38.1.x86_64. 9.8 MB/s | 87 kB 00:00 (75/137): libsigsegv-2.14-4.fc38.x86_64.rpm 7.7 MB/s | 27 kB 00:00 (76/137): libsepol-3.5-0.rc2.1.fc38.1.x86_64.rp 30 MB/s | 324 kB 00:00 (77/137): libsmartcols-2.38.1-4.fc38.x86_64.rpm 14 MB/s | 64 kB 00:00 (78/137): libsolv-0.7.22-4.fc38.x86_64.rpm 58 MB/s | 412 kB 00:00 (79/137): libssh-0.10.4-3.fc38.x86_64.rpm 24 MB/s | 209 kB 00:00 (80/137): libstdc++-13.0.1-0.2.fc38.x86_64.rpm 84 MB/s | 845 kB 00:00 (81/137): libssh-config-0.10.4-3.fc38.noarch.rp 661 kB/s | 8.9 kB 00:00 (82/137): libtasn1-4.19.0-2.fc38.x86_64.rpm 11 MB/s | 74 kB 00:00 (83/137): libtirpc-1.3.3-1.fc38.x86_64.rpm 24 MB/s | 94 kB 00:00 (84/137): libuuid-2.38.1-4.fc38.x86_64.rpm 7.2 MB/s | 28 kB 00:00 (85/137): libverto-0.3.2-5.fc38.x86_64.rpm 6.9 MB/s | 21 kB 00:00 (86/137): libunistring1.0-1.0-1.fc38.x86_64.rpm 65 MB/s | 539 kB 00:00 (87/137): libyaml-0.2.5-9.fc38.x86_64.rpm 18 MB/s | 59 kB 00:00 (88/137): libzstd-1.5.2-4.fc38.x86_64.rpm 46 MB/s | 295 kB 00:00 (89/137): libxml2-2.10.3-3.fc38.x86_64.rpm 47 MB/s | 700 kB 00:00 (90/137): libxcrypt-4.4.33-7.fc39.x86_64.rpm 7.0 MB/s | 120 kB 00:00 (91/137): lua-libs-5.4.4-8.fc38.x86_64.rpm 22 MB/s | 133 kB 00:00 (92/137): lz4-libs-1.9.4-2.fc38.x86_64.rpm 14 MB/s | 67 kB 00:00 (93/137): mpdecimal-2.5.1-6.fc38.x86_64.rpm 19 MB/s | 89 kB 00:00 (94/137): ncurses-base-6.4-3.20230114.fc38.noar 12 MB/s | 62 kB 00:00 (95/137): mpfr-4.1.1-3.fc38.x86_64.rpm 64 MB/s | 600 kB 00:00 (96/137): ncurses-libs-6.4-3.20230114.fc38.x86_ 38 MB/s | 333 kB 00:00 (97/137): npth-1.6-12.fc38.x86_64.rpm 7.2 MB/s | 24 kB 00:00 (98/137): nettle-3.8-3.fc38.x86_64.rpm 50 MB/s | 412 kB 00:00 (99/137): openldap-2.6.3-2.fc38.x86_64.rpm 47 MB/s | 254 kB 00:00 (100/137): p11-kit-trust-0.24.1-6.fc38.x86_64.r 25 MB/s | 136 kB 00:00 (101/137): p11-kit-0.24.1-6.fc38.x86_64.rpm 35 MB/s | 345 kB 00:00 (102/137): pcre2-10.42-1.fc38.1.x86_64.rpm 29 MB/s | 234 kB 00:00 (103/137): pcre2-syntax-10.42-1.fc38.1.noarch.r 25 MB/s | 144 kB 00:00 (104/137): popt-1.19-2.fc38.x86_64.rpm 15 MB/s | 60 kB 00:00 (105/137): publicsuffix-list-dafsa-20221208-2.f 16 MB/s | 59 kB 00:00 (106/137): openssl-libs-3.0.8-1.fc39.x86_64.rpm 62 MB/s | 2.1 MB 00:00 (107/137): python-setuptools-wheel-65.5.1-2.fc3 47 MB/s | 715 kB 00:00 (108/137): python-pip-wheel-22.3.1-2.fc38.noarc 69 MB/s | 1.4 MB 00:00 (109/137): python3-3.11.1-4.fc38.x86_64.rpm 2.9 MB/s | 28 kB 00:00 (110/137): python3-dateutil-2.8.2-5.fc38.noarch 40 MB/s | 349 kB 00:00 (111/137): python3-distro-1.8.0-2.fc38.noarch.r 13 MB/s | 45 kB 00:00 (112/137): python3-dbus-1.3.2-2.fc38.x86_64.rpm 29 MB/s | 147 kB 00:00 (113/137): python3-dnf-plugins-core-4.3.1-2.fc3 47 MB/s | 262 kB 00:00 (114/137): python3-dnf-4.14.0-2.fc38.noarch.rpm 66 MB/s | 564 kB 00:00 (115/137): python3-hawkey-0.68.0-2.fc38.x86_64. 25 MB/s | 108 kB 00:00 (116/137): python3-libcomps-0.1.18-5.fc38.x86_6 13 MB/s | 47 kB 00:00 (117/137): python3-gpg-1.17.1-3.fc38.x86_64.rpm 24 MB/s | 281 kB 00:00 (118/137): python3-rpm-4.18.0-10.fc38.x86_64.rp 12 MB/s | 72 kB 00:00 (119/137): python3-libdnf-0.68.0-2.fc38.x86_64. 59 MB/s | 816 kB 00:00 (120/137): python3-six-1.16.0-9.fc38.noarch.rpm 2.8 MB/s | 42 kB 00:00 (121/137): readline-8.2-3.fc38.x86_64.rpm 16 MB/s | 212 kB 00:00 (122/137): rpm-build-libs-4.18.0-10.fc38.x86_64 22 MB/s | 94 kB 00:00 (123/137): rpm-4.18.0-10.fc38.x86_64.rpm 50 MB/s | 540 kB 00:00 (124/137): rpm-libs-4.18.0-10.fc38.x86_64.rpm 44 MB/s | 312 kB 00:00 (125/137): rpm-sequoia-1.2.0-3.fc38.x86_64.rpm 63 MB/s | 841 kB 00:00 (126/137): rpm-sign-libs-4.18.0-10.fc38.x86_64. 3.1 MB/s | 26 kB 00:00 (127/137): setup-2.14.3-2.fc38.noarch.rpm 28 MB/s | 146 kB 00:00 (128/137): sed-4.8-12.fc38.x86_64.rpm 39 MB/s | 297 kB 00:00 (129/137): sqlite-libs-3.40.1-2.fc38.x86_64.rpm 55 MB/s | 666 kB 00:00 (130/137): shadow-utils-4.13-4.fc38.x86_64.rpm 63 MB/s | 1.2 MB 00:00 (131/137): systemd-libs-253~rc2-7.fc39.x86_64.r 50 MB/s | 653 kB 00:00 (132/137): tpm2-tss-4.0.1-3.fc38.x86_64.rpm 54 MB/s | 671 kB 00:00 (133/137): tzdata-2022g-2.fc38.noarch.rpm 48 MB/s | 431 kB 00:00 (134/137): xz-libs-5.4.1-1.fc38.x86_64.rpm 21 MB/s | 108 kB 00:00 (135/137): zlib-1.2.13-3.fc38.x86_64.rpm 22 MB/s | 95 kB 00:00 (136/137): python3-libs-3.11.1-4.fc38.x86_64.rp 88 MB/s | 9.2 MB 00:00 (137/137): zchunk-libs-1.2.3-2.fc38.x86_64.rpm 2.8 MB/s | 51 kB 00:00 -------------------------------------------------------------------------------- Total 106 MB/s | 56 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.2.fc38.x86_64 1/137 Running scriptlet: libgcc-13.0.1-0.2.fc38.x86_64 1/137 Installing : tzdata-2022g-2.fc38.noarch 2/137 Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Installing : fedora-release-identity-basic-39-0.1.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-2.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-2.fc38.noarch 6/137 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 7/137 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 8/137 Installing : libssh-config-0.10.4-3.fc38.noarch 9/137 Installing : libreport-filesystem-2.17.6-2.fc38.noarch 10/137 Installing : dnf-data-4.14.0-2.fc38.noarch 11/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-39-0.1.noarch 12/137 Installing : 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cyrus-sasl-lib-2.1.28-9.fc38.x86_64 68/137 Installing : libcomps-0.1.18-5.fc38.x86_64 69/137 Installing : grep-3.8-3.fc38.x86_64 70/137 Installing : libpsl-0.21.2-2.fc38.x86_64 71/137 Installing : libblkid-2.38.1-4.fc38.x86_64 72/137 Installing : libmount-2.38.1-4.fc38.x86_64 73/137 Installing : libgcrypt-1.10.1-7.fc38.x86_64 74/137 Installing : libksba-1.6.3-2.fc38.x86_64 75/137 Installing : mpfr-4.1.1-3.fc38.x86_64 76/137 Installing : elfutils-default-yama-scope-0.188-5.fc38.noarch 77/137 Running scriptlet: elfutils-default-yama-scope-0.188-5.fc38.noarch 77/137 Installing : elfutils-libs-0.188-5.fc38.x86_64 78/137 Installing : alternatives-1.21-2.fc38.x86_64 79/137 Installing : p11-kit-trust-0.24.1-6.fc38.x86_64 80/137 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.x86_64 80/137 Installing : gnutls-3.7.8-11.fc38.x86_64 81/137 Installing : glib2-2.74.1-3.fc38.x86_64 82/137 Installing : libbrotli-1.0.9-11.fc38.x86_64 83/137 Installing : libcap-ng-0.8.3-5.fc38.x86_64 84/137 Installing : audit-libs-3.1-2.fc39.x86_64 85/137 Installing : rpm-libs-4.18.0-10.fc38.x86_64 86/137 Installing : rpm-build-libs-4.18.0-10.fc38.x86_64 87/137 Installing : libsemanage-3.5-0.rc2.1.fc38.1.x86_64 88/137 Installing : shadow-utils-2:4.13-4.fc38.x86_64 89/137 Installing : libnghttp2-1.51.0-2.fc38.x86_64 90/137 Installing : libsigsegv-2.14-4.fc38.x86_64 91/137 Installing : gawk-5.1.1-5.fc38.x86_64 92/137 Installing : libverto-0.3.2-5.fc38.x86_64 93/137 Installing : libyaml-0.2.5-9.fc38.x86_64 94/137 Installing : libmodulemd-2.14.0-5.fc38.x86_64 95/137 Installing : mpdecimal-2.5.1-6.fc38.x86_64 96/137 Installing : npth-1.6-12.fc38.x86_64 97/137 Installing : coreutils-common-9.1-11.fc38.x86_64 98/137 Installing : openssl-libs-1:3.0.8-1.fc39.x86_64 99/137 Installing : coreutils-9.1-11.fc38.x86_64 100/137 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 101/137 Installing : ca-certificates-2023.2.60-2.fc38.noarch 101/137 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 101/137 Installing : krb5-libs-1.20.1-8.fc38.x86_64 102/137 Installing : libtirpc-1.3.3-1.fc38.x86_64 103/137 Installing : libfsverity-1.4-9.fc38.x86_64 104/137 Installing : zchunk-libs-1.2.3-2.fc38.x86_64 105/137 Installing : libsolv-0.7.22-4.fc38.x86_64 106/137 Installing : libnsl2-2.0.0-5.fc38.x86_64 107/137 Installing : libssh-0.10.4-3.fc38.x86_64 108/137 Installing : python-pip-wheel-22.3.1-2.fc38.noarch 109/137 Installing : python3-3.11.1-4.fc38.x86_64 110/137 Installing : python3-libs-3.11.1-4.fc38.x86_64 111/137 Installing : python3-dbus-1.3.2-2.fc38.x86_64 112/137 Installing : python3-libcomps-0.1.18-5.fc38.x86_64 113/137 Installing : python3-distro-1.8.0-2.fc38.noarch 114/137 Installing : python3-six-1.16.0-9.fc38.noarch 115/137 Installing : python3-dateutil-1:2.8.2-5.fc38.noarch 116/137 Installing : libarchive-3.6.1-5.fc39.x86_64 117/137 Installing : libevent-2.1.12-8.fc38.x86_64 118/137 Installing : openldap-2.6.3-2.fc38.x86_64 119/137 Installing : libcurl-7.87.0-4.fc38.x86_64 120/137 Installing : gnupg2-2.4.0-2.fc38.x86_64 121/137 Installing : gpgme-1.17.1-3.fc38.x86_64 122/137 Installing : librepo-1.15.1-2.fc38.x86_64 123/137 Installing : libdnf-0.68.0-2.fc38.x86_64 124/137 Installing : python3-libdnf-0.68.0-2.fc38.x86_64 125/137 Installing : python3-hawkey-0.68.0-2.fc38.x86_64 126/137 Installing : python3-gpg-1.17.1-3.fc38.x86_64 127/137 Installing : curl-7.87.0-4.fc38.x86_64 128/137 Running scriptlet: tpm2-tss-4.0.1-3.fc38.x86_64 129/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.x86_64 129/137 Installing : ima-evm-utils-1.4-7.fc38.x86_64 130/137 Installing : rpm-sign-libs-4.18.0-10.fc38.x86_64 131/137 Installing : python3-rpm-4.18.0-10.fc38.x86_64 132/137 Installing : python3-dnf-4.14.0-2.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-2.fc38.noarch 135/137 Installing : dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Installing : rpm-4.18.0-10.fc38.x86_64 137/137 Running scriptlet: filesystem-3.18-3.fc38.x86_64 137/137 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 137/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Verifying : alternatives-1.21-2.fc38.x86_64 1/137 Verifying : audit-libs-3.1-2.fc39.x86_64 2/137 Verifying : basesystem-11-15.fc38.noarch 3/137 Verifying : bash-5.2.15-3.fc38.x86_64 4/137 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 5/137 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/137 Verifying : coreutils-9.1-11.fc38.x86_64 7/137 Verifying : coreutils-common-9.1-11.fc38.x86_64 8/137 Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 9/137 Verifying : curl-7.87.0-4.fc38.x86_64 10/137 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 11/137 Verifying : dbus-libs-1:1.14.6-1.fc38.x86_64 12/137 Verifying : dnf-4.14.0-2.fc38.noarch 13/137 Verifying : dnf-data-4.14.0-2.fc38.noarch 14/137 Verifying : dnf-plugins-core-4.3.1-2.fc38.noarch 15/137 Verifying : elfutils-default-yama-scope-0.188-5.fc38.noarch 16/137 Verifying : elfutils-libelf-0.188-5.fc38.x86_64 17/137 Verifying : elfutils-libs-0.188-5.fc38.x86_64 18/137 Verifying : expat-2.5.0-2.fc38.x86_64 19/137 Verifying : fedora-gpg-keys-39-0.1.noarch 20/137 Verifying : fedora-release-39-0.1.noarch 21/137 Verifying : fedora-release-common-39-0.1.noarch 22/137 Verifying : fedora-release-identity-basic-39-0.1.noarch 23/137 Verifying : fedora-repos-39-0.1.noarch 24/137 Verifying : fedora-repos-rawhide-39-0.1.noarch 25/137 Verifying : file-libs-5.44-2.fc39.x86_64 26/137 Verifying : filesystem-3.18-3.fc38.x86_64 27/137 Verifying : findutils-1:4.9.0-3.fc38.x86_64 28/137 Verifying : gawk-5.1.1-5.fc38.x86_64 29/137 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 30/137 Verifying : glib2-2.74.1-3.fc38.x86_64 31/137 Verifying : glibc-2.37-1.fc38.x86_64 32/137 Verifying : glibc-common-2.37-1.fc38.x86_64 33/137 Verifying : glibc-minimal-langpack-2.37-1.fc38.x86_64 34/137 Verifying : gmp-1:6.2.1-4.fc38.x86_64 35/137 Verifying : gnupg2-2.4.0-2.fc38.x86_64 36/137 Verifying : gnutls-3.7.8-11.fc38.x86_64 37/137 Verifying : gpgme-1.17.1-3.fc38.x86_64 38/137 Verifying : grep-3.8-3.fc38.x86_64 39/137 Verifying : ima-evm-utils-1.4-7.fc38.x86_64 40/137 Verifying : json-c-0.16-4.fc38.x86_64 41/137 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 42/137 Verifying : krb5-libs-1.20.1-8.fc38.x86_64 43/137 Verifying : libacl-2.3.1-6.fc38.x86_64 44/137 Verifying : libarchive-3.6.1-5.fc39.x86_64 45/137 Verifying : libassuan-2.5.5-6.fc38.x86_64 46/137 Verifying : libattr-2.5.1-6.fc38.x86_64 47/137 Verifying : libb2-0.98.1-8.fc38.x86_64 48/137 Verifying : libblkid-2.38.1-4.fc38.x86_64 49/137 Verifying : libbrotli-1.0.9-11.fc38.x86_64 50/137 Verifying : libcap-2.48-6.fc38.x86_64 51/137 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 52/137 Verifying : libcom_err-1.46.5-4.fc38.x86_64 53/137 Verifying : libcomps-0.1.18-5.fc38.x86_64 54/137 Verifying : libcurl-7.87.0-4.fc38.x86_64 55/137 Verifying : libdnf-0.68.0-2.fc38.x86_64 56/137 Verifying : libevent-2.1.12-8.fc38.x86_64 57/137 Verifying : libffi-3.4.4-2.fc38.x86_64 58/137 Verifying : libfsverity-1.4-9.fc38.x86_64 59/137 Verifying : libgcc-13.0.1-0.2.fc38.x86_64 60/137 Verifying : libgcrypt-1.10.1-7.fc38.x86_64 61/137 Verifying : libgomp-13.0.1-0.2.fc38.x86_64 62/137 Verifying : libgpg-error-1.46-2.fc38.x86_64 63/137 Verifying : libidn2-2.3.4-2.fc38.x86_64 64/137 Verifying : libksba-1.6.3-2.fc38.x86_64 65/137 Verifying : libmodulemd-2.14.0-5.fc38.x86_64 66/137 Verifying : libmount-2.38.1-4.fc38.x86_64 67/137 Verifying : libnghttp2-1.51.0-2.fc38.x86_64 68/137 Verifying : libnsl2-2.0.0-5.fc38.x86_64 69/137 Verifying : libpsl-0.21.2-2.fc38.x86_64 70/137 Verifying : librepo-1.15.1-2.fc38.x86_64 71/137 Verifying : libreport-filesystem-2.17.6-2.fc38.noarch 72/137 Verifying : libselinux-3.5-0.rc2.1.fc38.1.x86_64 73/137 Verifying : libsemanage-3.5-0.rc2.1.fc38.1.x86_64 74/137 Verifying : libsepol-3.5-0.rc2.1.fc38.1.x86_64 75/137 Verifying : libsigsegv-2.14-4.fc38.x86_64 76/137 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 77/137 Verifying : libsolv-0.7.22-4.fc38.x86_64 78/137 Verifying : libssh-0.10.4-3.fc38.x86_64 79/137 Verifying : libssh-config-0.10.4-3.fc38.noarch 80/137 Verifying : libstdc++-13.0.1-0.2.fc38.x86_64 81/137 Verifying : libtasn1-4.19.0-2.fc38.x86_64 82/137 Verifying : libtirpc-1.3.3-1.fc38.x86_64 83/137 Verifying : libunistring1.0-1.0-1.fc38.x86_64 84/137 Verifying : libuuid-2.38.1-4.fc38.x86_64 85/137 Verifying : libverto-0.3.2-5.fc38.x86_64 86/137 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 87/137 Verifying : libxml2-2.10.3-3.fc38.x86_64 88/137 Verifying : libyaml-0.2.5-9.fc38.x86_64 89/137 Verifying : libzstd-1.5.2-4.fc38.x86_64 90/137 Verifying : lua-libs-5.4.4-8.fc38.x86_64 91/137 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 92/137 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 93/137 Verifying : mpfr-4.1.1-3.fc38.x86_64 94/137 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 95/137 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 96/137 Verifying : nettle-3.8-3.fc38.x86_64 97/137 Verifying : npth-1.6-12.fc38.x86_64 98/137 Verifying : openldap-2.6.3-2.fc38.x86_64 99/137 Verifying : openssl-libs-1:3.0.8-1.fc39.x86_64 100/137 Verifying : p11-kit-0.24.1-6.fc38.x86_64 101/137 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 102/137 Verifying : pcre2-10.42-1.fc38.1.x86_64 103/137 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 104/137 Verifying : popt-1.19-2.fc38.x86_64 105/137 Verifying : publicsuffix-list-dafsa-20221208-2.fc38.noarch 106/137 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 107/137 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 108/137 Verifying : python3-3.11.1-4.fc38.x86_64 109/137 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 110/137 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 111/137 Verifying : python3-distro-1.8.0-2.fc38.noarch 112/137 Verifying : python3-dnf-4.14.0-2.fc38.noarch 113/137 Verifying : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 114/137 Verifying : python3-gpg-1.17.1-3.fc38.x86_64 115/137 Verifying : python3-hawkey-0.68.0-2.fc38.x86_64 116/137 Verifying : python3-libcomps-0.1.18-5.fc38.x86_64 117/137 Verifying : python3-libdnf-0.68.0-2.fc38.x86_64 118/137 Verifying : python3-libs-3.11.1-4.fc38.x86_64 119/137 Verifying : python3-rpm-4.18.0-10.fc38.x86_64 120/137 Verifying : python3-six-1.16.0-9.fc38.noarch 121/137 Verifying : readline-8.2-3.fc38.x86_64 122/137 Verifying : rpm-4.18.0-10.fc38.x86_64 123/137 Verifying : rpm-build-libs-4.18.0-10.fc38.x86_64 124/137 Verifying : rpm-libs-4.18.0-10.fc38.x86_64 125/137 Verifying : rpm-sequoia-1.2.0-3.fc38.x86_64 126/137 Verifying : rpm-sign-libs-4.18.0-10.fc38.x86_64 127/137 Verifying : sed-4.8-12.fc38.x86_64 128/137 Verifying : setup-2.14.3-2.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-4.fc38.x86_64 130/137 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 131/137 Verifying : systemd-libs-253~rc2-7.fc39.x86_64 132/137 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 133/137 Verifying : tzdata-2022g-2.fc38.noarch 134/137 Verifying : xz-libs-5.4.1-1.fc38.x86_64 135/137 Verifying : zchunk-libs-1.2.3-2.fc38.x86_64 136/137 Verifying : zlib-1.2.13-3.fc38.x86_64 137/137 Installed products updated. Installed: alternatives-1.21-2.fc38.x86_64 audit-libs-3.1-2.fc39.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-11.fc38.x86_64 coreutils-common-9.1-11.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-4.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 dbus-libs-1:1.14.6-1.fc38.x86_64 dnf-4.14.0-2.fc38.noarch dnf-data-4.14.0-2.fc38.noarch dnf-plugins-core-4.3.1-2.fc38.noarch elfutils-default-yama-scope-0.188-5.fc38.noarch elfutils-libelf-0.188-5.fc38.x86_64 elfutils-libs-0.188-5.fc38.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.1.noarch fedora-release-common-39-0.1.noarch fedora-release-identity-basic-39-0.1.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-libs-5.44-2.fc39.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.74.1-3.fc38.x86_64 glibc-2.37-1.fc38.x86_64 glibc-common-2.37-1.fc38.x86_64 glibc-minimal-langpack-2.37-1.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.0-2.fc38.x86_64 gnutls-3.7.8-11.fc38.x86_64 gpgme-1.17.1-3.fc38.x86_64 grep-3.8-3.fc38.x86_64 ima-evm-utils-1.4-7.fc38.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.5-6.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcomps-0.1.18-5.fc38.x86_64 libcurl-7.87.0-4.fc38.x86_64 libdnf-0.68.0-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.0.1-0.2.fc38.x86_64 libgcrypt-1.10.1-7.fc38.x86_64 libgomp-13.0.1-0.2.fc38.x86_64 libgpg-error-1.46-2.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.3-2.fc38.x86_64 libmodulemd-2.14.0-5.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.6-2.fc38.noarch libselinux-3.5-0.rc2.1.fc38.1.x86_64 libsemanage-3.5-0.rc2.1.fc38.1.x86_64 libsepol-3.5-0.rc2.1.fc38.1.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libsolv-0.7.22-4.fc38.x86_64 libssh-0.10.4-3.fc38.x86_64 libssh-config-0.10.4-3.fc38.noarch libstdc++-13.0.1-0.2.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.3-3.fc38.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.2-4.fc38.x86_64 lua-libs-5.4.4-8.fc38.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 npth-1.6-12.fc38.x86_64 openldap-2.6.3-2.fc38.x86_64 openssl-libs-1:3.0.8-1.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20221208-2.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.1-4.fc38.x86_64 python3-dateutil-1:2.8.2-5.fc38.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-2.fc38.noarch python3-dnf-4.14.0-2.fc38.noarch python3-dnf-plugins-core-4.3.1-2.fc38.noarch python3-gpg-1.17.1-3.fc38.x86_64 python3-hawkey-0.68.0-2.fc38.x86_64 python3-libcomps-0.1.18-5.fc38.x86_64 python3-libdnf-0.68.0-2.fc38.x86_64 python3-libs-3.11.1-4.fc38.x86_64 python3-rpm-4.18.0-10.fc38.x86_64 python3-six-1.16.0-9.fc38.noarch readline-8.2-3.fc38.x86_64 rpm-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-3.fc38.x86_64 rpm-sign-libs-4.18.0-10.fc38.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-4.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253~rc2-7.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2022g-2.fc38.noarch xz-libs-5.4.1-1.fc38.x86_64 zchunk-libs-1.2.3-2.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 92 kB/s | 3.0 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 16 kB/s | 3.8 kB 00:00 fedora 81 kB/s | 22 kB 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 x86_64 1.0.8-13.fc38 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k xz-libs x86_64 5.4.1-1.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zip x86_64 3.0-36.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 265 k zlib x86_64 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k zstd x86_64 1.5.2-4.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 450 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 154 Packages Total size: 52 M Installed size: 182 M Downloading Packages: [SKIPPED] alternatives-1.21-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-9.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-0.rc2.1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-0.rc2.1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-0.rc2.1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-3.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.0.1-0.2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring1.0-1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-8.fc38.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-3.20230114.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-3.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.8-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-8.fc38.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-3.fc38.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-13.fc38.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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[SKIPPED] sqlite-libs-3.40.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-253~rc2-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022g-2.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-60.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-37.fc38.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-4.fc38.x86_64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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libstdc++-13.0.1-0.2.fc38.x86_64 90/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/154 Verifying : libtirpc-1.3.3-1.fc38.x86_64 92/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 93/154 Verifying : libutempter-1.2.1-8.fc38.x86_64 94/154 Verifying : libuuid-2.38.1-4.fc38.x86_64 95/154 Verifying : libverto-0.3.2-5.fc38.x86_64 96/154 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 97/154 Verifying : libxml2-2.10.3-3.fc38.x86_64 98/154 Verifying : libzstd-1.5.2-4.fc38.x86_64 99/154 Verifying : lua-libs-5.4.4-8.fc38.x86_64 100/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 101/154 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 102/154 Verifying : mpfr-4.1.1-3.fc38.x86_64 103/154 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 104/154 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 105/154 Verifying : nettle-3.8-3.fc38.x86_64 106/154 Verifying : nim-srpm-macros-3-8.fc38.noarch 107/154 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 108/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 109/154 Verifying : openldap-2.6.3-2.fc38.x86_64 110/154 Verifying : openssl-libs-1:3.0.8-1.fc39.x86_64 111/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 112/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 113/154 Verifying : package-notes-srpm-macros-0.5-7.fc38.noarch 114/154 Verifying : pam-1.5.2-16.fc38.x86_64 115/154 Verifying : pam-libs-1.5.2-16.fc38.x86_64 116/154 Verifying : patch-2.7.6-19.fc38.x86_64 117/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 118/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 119/154 Verifying : perl-srpm-macros-1-48.fc38.noarch 120/154 Verifying : pkgconf-1.8.0-5.fc38.x86_64 121/154 Verifying : pkgconf-m4-1.8.0-5.fc38.noarch 122/154 Verifying : pkgconf-pkg-config-1.8.0-5.fc38.x86_64 123/154 Verifying : popt-1.19-2.fc38.x86_64 124/154 Verifying : publicsuffix-list-dafsa-20221208-2.fc38.noarch 125/154 Verifying : pyproject-srpm-macros-1.6.1-1.fc38.noarch 126/154 Verifying : python-srpm-macros-3.11-9.fc38.noarch 127/154 Verifying : qt5-srpm-macros-5.15.8-2.fc38.noarch 128/154 Verifying : readline-8.2-3.fc38.x86_64 129/154 Verifying : redhat-rpm-config-249-1.fc39.noarch 130/154 Verifying : rpm-4.18.0-10.fc38.x86_64 131/154 Verifying : rpm-build-4.18.0-10.fc38.x86_64 132/154 Verifying : rpm-build-libs-4.18.0-10.fc38.x86_64 133/154 Verifying : rpm-libs-4.18.0-10.fc38.x86_64 134/154 Verifying : rpm-sequoia-1.2.0-3.fc38.x86_64 135/154 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 136/154 Verifying : rust-srpm-macros-23-2.fc38.noarch 137/154 Verifying : sed-4.8-12.fc38.x86_64 138/154 Verifying : setup-2.14.3-2.fc38.noarch 139/154 Verifying : shadow-utils-2:4.13-4.fc38.x86_64 140/154 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 141/154 Verifying : systemd-libs-253~rc2-7.fc39.x86_64 142/154 Verifying : tar-2:1.34-7.fc38.x86_64 143/154 Verifying : tzdata-2022g-2.fc38.noarch 144/154 Verifying : unzip-6.0-60.fc38.x86_64 145/154 Verifying : util-linux-2.38.1-4.fc38.x86_64 146/154 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 147/154 Verifying : which-2.21-37.fc38.x86_64 148/154 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 149/154 Verifying : xz-5.4.1-1.fc38.x86_64 150/154 Verifying : xz-libs-5.4.1-1.fc38.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.2-4.fc38.x86_64 154/154 Installed: alternatives-1.21-2.fc38.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch audit-libs-3.1-2.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.39-9.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-11.fc38.x86_64 coreutils-common-9.1-11.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-4.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.9-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.188-5.fc38.x86_64 elfutils-debuginfod-client-0.188-5.fc38.x86_64 elfutils-default-yama-scope-0.188-5.fc38.noarch elfutils-libelf-0.188-5.fc38.x86_64 elfutils-libs-0.188-5.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.1.noarch fedora-release-common-39-0.1.noarch fedora-release-identity-basic-39-0.1.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-2.fc39.x86_64 file-libs-5.44-2.fc39.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-12.1-16.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-1.fc38.x86_64 glibc-common-2.37-1.fc38.x86_64 glibc-gconv-extra-2.37-1.fc38.x86_64 glibc-minimal-langpack-2.37-1.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-1.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-7.87.0-4.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.0.1-0.2.fc38.x86_64 libgomp-13.0.1-0.2.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-5.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-0.rc2.1.fc38.1.x86_64 libsemanage-3.5-0.rc2.1.fc38.1.x86_64 libsepol-3.5-0.rc2.1.fc38.1.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.4-3.fc38.x86_64 libssh-config-0.10.4-3.fc38.noarch libstdc++-13.0.1-0.2.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.3-3.fc38.x86_64 libzstd-1.5.2-4.fc38.x86_64 lua-libs-5.4.4-8.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nim-srpm-macros-3-8.fc38.noarch ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.3-2.fc38.x86_64 openssl-libs-1:3.0.8-1.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-5.fc38.x86_64 pkgconf-m4-1.8.0-5.fc38.noarch pkgconf-pkg-config-1.8.0-5.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20221208-2.fc38.noarch pyproject-srpm-macros-1.6.1-1.fc38.noarch python-srpm-macros-3.11-9.fc38.noarch qt5-srpm-macros-5.15.8-2.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-249-1.fc39.noarch rpm-4.18.0-10.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-3.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch rust-srpm-macros-23-2.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-4.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253~rc2-7.fc39.x86_64 tar-2:1.34-7.fc38.x86_64 tzdata-2022g-2.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-37.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.2-4.fc38.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: efi-srpm-macros-5-7.fc38.noarch libblkid-2.38.1-4.fc38.x86_64 libssh-config-0.10.4-3.fc38.noarch alternatives-1.21-2.fc38.x86_64 file-5.44-2.fc39.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 ncurses-libs-6.4-3.20230114.fc38.x86_64 popt-1.19-2.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 coreutils-common-9.1-11.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch libpkgconf-1.8.0-5.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch libxcrypt-4.4.33-7.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 setup-2.14.3-2.fc38.noarch findutils-4.9.0-3.fc38.x86_64 libstdc++-13.0.1-0.2.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch libffi-3.4.4-2.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch sed-4.8-12.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 systemd-libs-253~rc2-7.fc39.x86_64 zip-3.0-36.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch libarchive-3.6.1-5.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 gzip-1.12-3.fc38.x86_64 curl-7.87.0-4.fc38.x86_64 libsepol-3.5-0.rc2.1.fc38.1.x86_64 lua-libs-5.4.4-8.fc38.x86_64 elfutils-0.188-5.fc38.x86_64 python-srpm-macros-3.11-9.fc38.noarch rust-srpm-macros-23-2.fc38.noarch rpm-libs-4.18.0-10.fc38.x86_64 glibc-gconv-extra-2.37-1.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch file-libs-5.44-2.fc39.x86_64 coreutils-9.1-11.fc38.x86_64 gdb-minimal-12.1-16.fc38.x86_64 openblas-srpm-macros-2-13.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch libtasn1-4.19.0-2.fc38.x86_64 readline-8.2-3.fc38.x86_64 basesystem-11-15.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch fedora-repos-39-0.1.noarch redhat-rpm-config-249-1.fc39.noarch qt5-srpm-macros-5.15.8-2.fc38.noarch elfutils-libelf-0.188-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch nim-srpm-macros-3-8.fc38.noarch pkgconf-m4-1.8.0-5.fc38.noarch cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 audit-libs-3.1-2.fc39.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-common-39-0.1.noarch pkgconf-1.8.0-5.fc38.x86_64 rpm-4.18.0-10.fc38.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch fedora-repos-rawhide-39-0.1.noarch fedora-release-identity-basic-39-0.1.noarch authselect-libs-1.4.2-2.fc38.x86_64 binutils-2.39-9.fc38.x86_64 bash-5.2.15-3.fc38.x86_64 unzip-6.0-60.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 libselinux-3.5-0.rc2.1.fc38.1.x86_64 ed-1.19-2.fc38.x86_64 nettle-3.8-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 openssl-libs-3.0.8-1.fc39.x86_64 shadow-utils-4.13-4.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 elfutils-default-yama-scope-0.188-5.fc38.noarch elfutils-libs-0.188-5.fc38.x86_64 pam-1.5.2-16.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 glibc-common-2.37-1.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 elfutils-debuginfod-client-0.188-5.fc38.x86_64 libcap-2.48-6.fc38.x86_64 tar-1.34-7.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch pyproject-srpm-macros-1.6.1-1.fc38.noarch libattr-2.5.1-6.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 which-2.21-37.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 zstd-1.5.2-4.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch libgomp-13.0.1-0.2.fc38.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch bzip2-libs-1.0.8-13.fc38.x86_64 glibc-2.37-1.fc38.x86_64 libssh-0.10.4-3.fc38.x86_64 libsemanage-3.5-0.rc2.1.fc38.1.x86_64 p11-kit-0.24.1-6.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libcurl-7.87.0-4.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch util-linux-core-2.38.1-4.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 tzdata-2022g-2.fc38.noarch binutils-gold-2.39-9.fc38.x86_64 info-7.0.2-1.fc38.x86_64 fedora-release-39-0.1.noarch libzstd-1.5.2-4.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 diffutils-3.9-1.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 rpm-sequoia-1.2.0-3.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 glibc-minimal-langpack-2.37-1.fc38.x86_64 openldap-2.6.3-2.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch libgcc-13.0.1-0.2.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch p11-kit-trust-0.24.1-6.fc38.x86_64 pkgconf-pkg-config-1.8.0-5.fc38.x86_64 publicsuffix-list-dafsa-20221208-2.fc38.noarch mpfr-4.1.1-3.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 grep-3.8-3.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-4.fc39.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-it0znrbb/smoldyn/smoldyn.spec) Config(child) 1 minutes 0 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1676050893.978023 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1676050893.978023/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1676050893.978023/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 85 kB/s | 3.0 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 16 kB/s | 3.8 kB 00:00 fedora 70 kB/s | 22 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-4.fc39.src.rpm Start: build setup for smoldyn-2.67.3-4.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-4.fc39.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 13 kB/s | 3.0 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 16 kB/s | 3.8 kB 00:00 fedora 70 kB/s | 22 kB 00:00 Dependencies resolved. ===================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================== Installing: boost-devel x86_64 1.78.0-11.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 M cmake x86_64 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : xorg-x11-proto-devel-2022.2-3.fc38.noarch 1/245 Installing : boost-system-1.78.0-11.fc38.x86_64 2/245 Installing : boost-chrono-1.78.0-11.fc38.x86_64 3/245 Installing : boost-thread-1.78.0-11.fc38.x86_64 4/245 Installing : libicu-72.1-2.fc38.x86_64 5/245 Installing : libglvnd-1:1.6.0-2.fc38.x86_64 6/245 Installing : expat-2.5.0-2.fc38.x86_64 7/245 Installing : libXau-1.0.11-2.fc38.x86_64 8/245 Installing : libxcb-1.13.1-11.fc38.x86_64 9/245 Installing : cmake-filesystem-3.26.0~rc2-1.fc39.x86_64 10/245 Installing : boost-regex-1.78.0-11.fc38.x86_64 11/245 Installing : python-rpm-macros-3.11-9.fc38.noarch 12/245 Installing : pixman-0.40.0-7.fc38.x86_64 13/245 Installing : mesa-libglapi-22.3.3-3.fc38.x86_64 14/245 Installing : libquadmath-13.0.1-0.2.fc38.x86_64 15/245 Installing : libgfortran-13.0.1-0.2.fc38.x86_64 16/245 Installing : libmpc-1.3.1-2.fc38.x86_64 17/245 Installing : libX11-xcb-1.8.4-1.fc38.x86_64 18/245 Installing : 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Verifying : libXfixes-6.0.0-5.fc38.x86_64 87/245 Verifying : libXfixes-devel-6.0.0-5.fc38.x86_64 88/245 Verifying : libXfont2-2.0.3-14.fc38.x86_64 89/245 Verifying : libXft-2.3.6-2.fc38.x86_64 90/245 Verifying : libXi-1.8-4.fc38.x86_64 91/245 Verifying : libXi-devel-1.8-4.fc38.x86_64 92/245 Verifying : libXmu-1.1.4-2.fc38.x86_64 93/245 Verifying : libXmu-devel-1.1.4-2.fc38.x86_64 94/245 Verifying : libXrender-0.9.11-2.fc38.x86_64 95/245 Verifying : libXt-1.2.1-4.fc38.x86_64 96/245 Verifying : libXt-devel-1.2.1-4.fc38.x86_64 97/245 Verifying : libXxf86vm-1.1.5-2.fc38.x86_64 98/245 Verifying : libb2-0.98.1-8.fc38.x86_64 99/245 Verifying : libdrm-2.4.114-2.fc38.x86_64 100/245 Verifying : libdrm-devel-2.4.114-2.fc38.x86_64 101/245 Verifying : libfontenc-1.1.6-2.fc38.x86_64 102/245 Verifying : libgfortran-13.0.1-0.2.fc38.x86_64 103/245 Verifying : libglvnd-1:1.6.0-2.fc38.x86_64 104/245 Verifying : libglvnd-core-devel-1:1.6.0-2.fc38.x86_64 105/245 Verifying : libglvnd-devel-1:1.6.0-2.fc38.x86_64 106/245 Verifying : libglvnd-egl-1:1.6.0-2.fc38.x86_64 107/245 Verifying : libglvnd-gles-1:1.6.0-2.fc38.x86_64 108/245 Verifying : libglvnd-glx-1:1.6.0-2.fc38.x86_64 109/245 Verifying : libglvnd-opengl-1:1.6.0-2.fc38.x86_64 110/245 Verifying : libicu-72.1-2.fc38.x86_64 111/245 Verifying : libicu-devel-72.1-2.fc38.x86_64 112/245 Verifying : libimagequant-2.17.0-4.fc38.x86_64 113/245 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 114/245 Verifying : libmpc-1.3.1-2.fc38.x86_64 115/245 Verifying : libpciaccess-0.16-8.fc38.x86_64 116/245 Verifying : libpciaccess-devel-0.16-8.fc38.x86_64 117/245 Verifying : libpng-2:1.6.37-14.fc38.x86_64 118/245 Verifying : libqhull_r-1:7.2.1-12.fc38.x86_64 119/245 Verifying : libquadmath-13.0.1-0.2.fc38.x86_64 120/245 Verifying : libquadmath-devel-13.0.1-0.2.fc38.x86_64 121/245 Verifying : libraqm-0.8.0-4.fc38.x86_64 122/245 Verifying : libstdc++-devel-13.0.1-0.2.fc38.x86_64 123/245 Verifying : libtiff-4.4.0-5.fc38.x86_64 124/245 Verifying : libtiff-devel-4.4.0-5.fc38.x86_64 125/245 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 126/245 Verifying : libunwind-1.6.2-5.fc38.x86_64 127/245 Verifying : libuv-1:1.44.2-3.fc38.x86_64 128/245 Verifying : libwayland-client-1.21.0-2.fc38.x86_64 129/245 Verifying : libwayland-server-1.21.0-2.fc38.x86_64 130/245 Verifying : libwebp-1.3.0-2.fc38.x86_64 131/245 Verifying : libxcb-1.13.1-11.fc38.x86_64 132/245 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 133/245 Verifying : libxcrypt-devel-4.4.33-7.fc39.x86_64 134/245 Verifying : libxkbfile-1.1.1-2.fc38.x86_64 135/245 Verifying : libxshmfence-1.3-12.fc38.x86_64 136/245 Verifying : libxslt-1.1.37-2.fc38.x86_64 137/245 Verifying : make-1:4.4-3.fc38.x86_64 138/245 Verifying : mesa-libEGL-22.3.3-3.fc38.x86_64 139/245 Verifying : mesa-libGL-22.3.3-3.fc38.x86_64 140/245 Verifying : mesa-libGL-devel-22.3.3-3.fc38.x86_64 141/245 Verifying : mesa-libGLU-9.0.1-8.fc38.x86_64 142/245 Verifying : mesa-libGLU-devel-9.0.1-8.fc38.x86_64 143/245 Verifying : mesa-libgbm-22.3.3-3.fc38.x86_64 144/245 Verifying : mesa-libglapi-22.3.3-3.fc38.x86_64 145/245 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 146/245 Verifying : ncurses-6.4-3.20230114.fc38.x86_64 147/245 Verifying : openblas-0.3.21-4.fc38.x86_64 148/245 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 149/245 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 150/245 Verifying : perl-Carp-1.52-490.fc38.noarch 151/245 Verifying : perl-Class-Struct-0.66-495.fc38.noarch 152/245 Verifying : perl-DynaLoader-1.52-495.fc38.x86_64 153/245 Verifying : perl-Encode-4:3.19-493.fc38.x86_64 154/245 Verifying : perl-Errno-1.36-495.fc38.x86_64 155/245 Verifying : perl-Exporter-5.77-490.fc38.noarch 156/245 Verifying : perl-Fcntl-1.15-495.fc38.x86_64 157/245 Verifying : perl-File-Basename-2.85-495.fc38.noarch 158/245 Verifying : perl-File-Path-2.18-490.fc38.noarch 159/245 Verifying : perl-File-Temp-1:0.231.100-490.fc38.noarch 160/245 Verifying : perl-File-stat-1.12-495.fc38.noarch 161/245 Verifying : perl-Getopt-Long-1:2.54-2.fc38.noarch 162/245 Verifying : perl-Getopt-Std-1.13-495.fc38.noarch 163/245 Verifying : perl-HTTP-Tiny-0.082-2.fc38.noarch 164/245 Verifying : perl-IO-1.50-495.fc38.x86_64 165/245 Verifying : perl-IPC-Open3-1.22-495.fc38.noarch 166/245 Verifying : perl-MIME-Base64-3.16-490.fc38.x86_64 167/245 Verifying : perl-POSIX-2.03-495.fc38.x86_64 168/245 Verifying : perl-PathTools-3.84-490.fc38.x86_64 169/245 Verifying : perl-Pod-Escapes-1:1.07-490.fc38.noarch 170/245 Verifying : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 171/245 Verifying : perl-Pod-Simple-1:3.43-491.fc38.noarch 172/245 Verifying : perl-Pod-Usage-4:2.03-4.fc38.noarch 173/245 Verifying : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 174/245 Verifying : perl-SelectSaver-1.02-495.fc38.noarch 175/245 Verifying : perl-Socket-4:2.036-2.fc38.x86_64 176/245 Verifying : perl-Storable-1:3.26-490.fc38.x86_64 177/245 Verifying : perl-Symbol-1.09-495.fc38.noarch 178/245 Verifying : perl-Term-ANSIColor-5.01-491.fc38.noarch 179/245 Verifying : perl-Term-Cap-1.17-490.fc38.noarch 180/245 Verifying : perl-Text-ParseWords-3.31-490.fc38.noarch 181/245 Verifying : perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch 182/245 Verifying : perl-Time-Local-2:1.300-490.fc38.noarch 183/245 Verifying : perl-constant-1.33-491.fc38.noarch 184/245 Verifying : perl-if-0.61.000-495.fc38.noarch 185/245 Verifying : perl-interpreter-4:5.36.0-495.fc38.x86_64 186/245 Verifying : perl-libs-4:5.36.0-495.fc38.x86_64 187/245 Verifying : perl-macros-4:5.36.0-495.fc38.noarch 188/245 Verifying : perl-mro-1.26-495.fc38.x86_64 189/245 Verifying : perl-overload-1.35-495.fc38.noarch 190/245 Verifying : perl-overloading-0.02-495.fc38.noarch 191/245 Verifying : perl-parent-1:0.239-2.fc38.noarch 192/245 Verifying : perl-podlators-1:5.01-2.fc38.noarch 193/245 Verifying : perl-vars-1.05-495.fc38.noarch 194/245 Verifying : pixman-0.40.0-7.fc38.x86_64 195/245 Verifying : pybind11-devel-2.10.3-2.fc38.x86_64 196/245 Verifying : pyproject-rpm-macros-1.6.1-1.fc38.noarch 197/245 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 198/245 Verifying : python-rpm-macros-3.11-9.fc38.noarch 199/245 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 200/245 Verifying : python3-3.11.1-4.fc38.x86_64 201/245 Verifying : python3-appdirs-1.4.4-8.fc38.noarch 202/245 Verifying : python3-brotli-1.0.9-11.fc38.x86_64 203/245 Verifying : python3-cairo-1.23.0-2.fc38.x86_64 204/245 Verifying : python3-contourpy-1.0.7-2.fc38.x86_64 205/245 Verifying : python3-cycler-0.11.0-7.fc38.noarch 206/245 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 207/245 Verifying : python3-devel-3.11.1-4.fc38.x86_64 208/245 Verifying : python3-flaky-3.7.0-10.fc38.noarch 209/245 Verifying : python3-fonttools-4.38.0-2.fc38.x86_64 210/245 Verifying : python3-fs-2.4.11-13.fc38.noarch 211/245 Verifying : python3-kiwisolver-1.4.4-7.fc38.x86_64 212/245 Verifying : python3-libs-3.11.1-4.fc38.x86_64 213/245 Verifying : python3-matplotlib-3.6.3-2.fc38.x86_64 214/245 Verifying : python3-matplotlib-data-3.6.3-2.fc38.noarch 215/245 Verifying : python3-matplotlib-data-fonts-3.6.3-2.fc38.noarc 216/245 Verifying : python3-matplotlib-tk-3.6.3-2.fc38.x86_64 217/245 Verifying : python3-munkres-1.1.2-14.fc38.noarch 218/245 Verifying : python3-numpy-1:1.24.1-2.fc38.x86_64 219/245 Verifying : python3-numpy-f2py-1:1.24.1-2.fc38.x86_64 220/245 Verifying : python3-olefile-0.46-19.fc38.noarch 221/245 Verifying : python3-packaging-23.0-1.fc38.noarch 222/245 Verifying : python3-pillow-9.4.0-2.fc38.x86_64 223/245 Verifying : python3-pillow-tk-9.4.0-2.fc38.x86_64 224/245 Verifying : python3-pyparsing-3.0.9-3.fc38.noarch 225/245 Verifying : python3-pytz-2022.7.1-2.fc38.noarch 226/245 Verifying : python3-rpm-generators-14-2.fc38.noarch 227/245 Verifying : python3-rpm-macros-3.11-9.fc38.noarch 228/245 Verifying : python3-scipy-1.8.1-6.fc37.x86_64 229/245 Verifying : python3-setuptools-65.5.1-2.fc38.noarch 230/245 Verifying : python3-six-1.16.0-9.fc38.noarch 231/245 Verifying : python3-tkinter-3.11.1-4.fc38.x86_64 232/245 Verifying : python3-wheel-1:0.38.4-2.fc38.noarch 233/245 Verifying : rhash-1.4.3-2.fc38.x86_64 234/245 Verifying : tcl-1:8.6.12-4.fc38.x86_64 235/245 Verifying : tk-1:8.6.12-4.fc38.x86_64 236/245 Verifying : vim-filesystem-2:9.0.1293-1.fc39.noarch 237/245 Verifying : xkbcomp-1.4.6-5.fc38.x86_64 238/245 Verifying : xkeyboard-config-2.38-1.fc38.noarch 239/245 Verifying : xml-common-0.6.3-60.fc38.noarch 240/245 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 241/245 Verifying : xorg-x11-server-Xvfb-1.20.14-18.fc38.x86_64 242/245 Verifying : xorg-x11-server-common-1.20.14-18.fc38.x86_64 243/245 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 244/245 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 245/245 Installed: annobin-docs-11.09-1.fc38.noarch annobin-plugin-gcc-11.09-1.fc38.x86_64 boost-1.78.0-11.fc38.x86_64 boost-atomic-1.78.0-11.fc38.x86_64 boost-chrono-1.78.0-11.fc38.x86_64 boost-container-1.78.0-11.fc38.x86_64 boost-context-1.78.0-11.fc38.x86_64 boost-contract-1.78.0-11.fc38.x86_64 boost-coroutine-1.78.0-11.fc38.x86_64 boost-date-time-1.78.0-11.fc38.x86_64 boost-devel-1.78.0-11.fc38.x86_64 boost-fiber-1.78.0-11.fc38.x86_64 boost-filesystem-1.78.0-11.fc38.x86_64 boost-graph-1.78.0-11.fc38.x86_64 boost-iostreams-1.78.0-11.fc38.x86_64 boost-json-1.78.0-11.fc38.x86_64 boost-locale-1.78.0-11.fc38.x86_64 boost-log-1.78.0-11.fc38.x86_64 boost-math-1.78.0-11.fc38.x86_64 boost-nowide-1.78.0-11.fc38.x86_64 boost-numpy3-1.78.0-11.fc38.x86_64 boost-program-options-1.78.0-11.fc38.x86_64 boost-python3-1.78.0-11.fc38.x86_64 boost-random-1.78.0-11.fc38.x86_64 boost-regex-1.78.0-11.fc38.x86_64 boost-serialization-1.78.0-11.fc38.x86_64 boost-stacktrace-1.78.0-11.fc38.x86_64 boost-system-1.78.0-11.fc38.x86_64 boost-test-1.78.0-11.fc38.x86_64 boost-thread-1.78.0-11.fc38.x86_64 boost-timer-1.78.0-11.fc38.x86_64 boost-type_erasure-1.78.0-11.fc38.x86_64 boost-wave-1.78.0-11.fc38.x86_64 cairo-1.17.6-3.fc38.x86_64 cmake-3.26.0~rc2-1.fc39.x86_64 cmake-data-3.26.0~rc2-1.fc39.noarch cmake-filesystem-3.26.0~rc2-1.fc39.x86_64 cmake-rpm-macros-3.26.0~rc2-1.fc39.noarch cpp-13.0.1-0.2.fc38.x86_64 dejavu-sans-fonts-2.37-20.fc38.noarch emacs-filesystem-1:28.2-4.fc38.noarch expat-2.5.0-2.fc38.x86_64 flexiblas-3.3.0-2.fc38.x86_64 flexiblas-netlib-3.3.0-2.fc38.x86_64 flexiblas-openblas-openmp-3.3.0-2.fc38.x86_64 fontconfig-2.14.2-1.fc38.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freeglut-3.4.0-2.fc38.x86_64 freeglut-devel-3.4.0-2.fc38.x86_64 freetype-2.12.1-4.fc38.x86_64 fribidi-1.0.12-3.fc38.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.0.1-0.2.fc38.x86_64 gcc-c++-13.0.1-0.2.fc38.x86_64 gcc-plugin-annobin-13.0.1-0.2.fc38.x86_64 gl-manpages-1.1-26.20190306.fc38.noarch glib2-2.74.1-3.fc38.x86_64 glibc-devel-2.37-1.fc38.x86_64 glibc-headers-x86-2.37-1.fc38.noarch gnutls-3.7.8-11.fc38.x86_64 google-noto-fonts-common-20230201-1.fc38.noarch google-noto-sans-vf-fonts-20230201-1.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 groff-base-1.22.4-11.fc38.x86_64 guile22-2.2.7-7.fc38.x86_64 harfbuzz-6.0.0-3.fc38.x86_64 hwdata-0.367-1.fc38.noarch jbigkit-libs-2.1-25.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 kernel-headers-6.2.0-0.rc6.git0.1.fc38.x86_64 langpacks-core-font-en-3.0-31.fc38.noarch lcms2-2.14-2.fc38.x86_64 libICE-1.0.10-10.fc38.x86_64 libICE-devel-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libSM-devel-1.2.3-12.fc38.x86_64 libX11-1.8.4-1.fc38.x86_64 libX11-common-1.8.4-1.fc38.noarch libX11-devel-1.8.4-1.fc38.x86_64 libX11-xcb-1.8.4-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXdmcp-1.1.3-10.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXext-devel-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXfixes-devel-6.0.0-5.fc38.x86_64 libXfont2-2.0.3-14.fc38.x86_64 libXft-2.3.6-2.fc38.x86_64 libXi-1.8-4.fc38.x86_64 libXi-devel-1.8-4.fc38.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXmu-devel-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXt-devel-1.2.1-4.fc38.x86_64 libXxf86vm-1.1.5-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libdrm-2.4.114-2.fc38.x86_64 libdrm-devel-2.4.114-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.0.1-0.2.fc38.x86_64 libglvnd-1:1.6.0-2.fc38.x86_64 libglvnd-core-devel-1:1.6.0-2.fc38.x86_64 libglvnd-devel-1:1.6.0-2.fc38.x86_64 libglvnd-egl-1:1.6.0-2.fc38.x86_64 libglvnd-gles-1:1.6.0-2.fc38.x86_64 libglvnd-glx-1:1.6.0-2.fc38.x86_64 libglvnd-opengl-1:1.6.0-2.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libimagequant-2.17.0-4.fc38.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpciaccess-0.16-8.fc38.x86_64 libpciaccess-devel-0.16-8.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libqhull_r-1:7.2.1-12.fc38.x86_64 libquadmath-13.0.1-0.2.fc38.x86_64 libquadmath-devel-13.0.1-0.2.fc38.x86_64 libraqm-0.8.0-4.fc38.x86_64 libstdc++-devel-13.0.1-0.2.fc38.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtiff-devel-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunwind-1.6.2-5.fc38.x86_64 libuv-1:1.44.2-3.fc38.x86_64 libwayland-client-1.21.0-2.fc38.x86_64 libwayland-server-1.21.0-2.fc38.x86_64 libwebp-1.3.0-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-7.fc39.x86_64 libxkbfile-1.1.1-2.fc38.x86_64 libxshmfence-1.3-12.fc38.x86_64 libxslt-1.1.37-2.fc38.x86_64 make-1:4.4-3.fc38.x86_64 mesa-libEGL-22.3.3-3.fc38.x86_64 mesa-libGL-22.3.3-3.fc38.x86_64 mesa-libGL-devel-22.3.3-3.fc38.x86_64 mesa-libGLU-9.0.1-8.fc38.x86_64 mesa-libGLU-devel-9.0.1-8.fc38.x86_64 mesa-libgbm-22.3.3-3.fc38.x86_64 mesa-libglapi-22.3.3-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 ncurses-6.4-3.20230114.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 perl-Carp-1.52-490.fc38.noarch perl-Class-Struct-0.66-495.fc38.noarch perl-DynaLoader-1.52-495.fc38.x86_64 perl-Encode-4:3.19-493.fc38.x86_64 perl-Errno-1.36-495.fc38.x86_64 perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-495.fc38.x86_64 perl-File-Basename-2.85-495.fc38.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-495.fc38.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-495.fc38.noarch perl-HTTP-Tiny-0.082-2.fc38.noarch perl-IO-1.50-495.fc38.x86_64 perl-IPC-Open3-1.22-495.fc38.noarch perl-MIME-Base64-3.16-490.fc38.x86_64 perl-POSIX-2.03-495.fc38.x86_64 perl-PathTools-3.84-490.fc38.x86_64 perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.43-491.fc38.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 perl-SelectSaver-1.02-495.fc38.noarch perl-Socket-4:2.036-2.fc38.x86_64 perl-Storable-1:3.26-490.fc38.x86_64 perl-Symbol-1.09-495.fc38.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.17-490.fc38.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch perl-Time-Local-2:1.300-490.fc38.noarch perl-constant-1.33-491.fc38.noarch perl-if-0.61.000-495.fc38.noarch perl-interpreter-4:5.36.0-495.fc38.x86_64 perl-libs-4:5.36.0-495.fc38.x86_64 perl-macros-4:5.36.0-495.fc38.noarch perl-mro-1.26-495.fc38.x86_64 perl-overload-1.35-495.fc38.noarch perl-overloading-0.02-495.fc38.noarch perl-parent-1:0.239-2.fc38.noarch perl-podlators-1:5.01-2.fc38.noarch perl-vars-1.05-495.fc38.noarch pixman-0.40.0-7.fc38.x86_64 pybind11-devel-2.10.3-2.fc38.x86_64 pyproject-rpm-macros-1.6.1-1.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-rpm-macros-3.11-9.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.1-4.fc38.x86_64 python3-appdirs-1.4.4-8.fc38.noarch python3-brotli-1.0.9-11.fc38.x86_64 python3-cairo-1.23.0-2.fc38.x86_64 python3-contourpy-1.0.7-2.fc38.x86_64 python3-cycler-0.11.0-7.fc38.noarch python3-dateutil-1:2.8.2-5.fc38.noarch python3-devel-3.11.1-4.fc38.x86_64 python3-flaky-3.7.0-10.fc38.noarch python3-fonttools-4.38.0-2.fc38.x86_64 python3-fs-2.4.11-13.fc38.noarch python3-kiwisolver-1.4.4-7.fc38.x86_64 python3-libs-3.11.1-4.fc38.x86_64 python3-lxml-666:4.9.2-2.fc39.x86_64 python3-matplotlib-3.6.3-2.fc38.x86_64 python3-matplotlib-data-3.6.3-2.fc38.noarch python3-matplotlib-data-fonts-3.6.3-2.fc38.noarch python3-matplotlib-tk-3.6.3-2.fc38.x86_64 python3-munkres-1.1.2-14.fc38.noarch python3-numpy-1:1.24.1-2.fc38.x86_64 python3-numpy-f2py-1:1.24.1-2.fc38.x86_64 python3-olefile-0.46-19.fc38.noarch python3-packaging-23.0-1.fc38.noarch python3-pillow-9.4.0-2.fc38.x86_64 python3-pillow-tk-9.4.0-2.fc38.x86_64 python3-pyparsing-3.0.9-3.fc38.noarch python3-pytz-2022.7.1-2.fc38.noarch python3-rpm-generators-14-2.fc38.noarch python3-rpm-macros-3.11-9.fc38.noarch python3-scipy-1.8.1-6.fc37.x86_64 python3-setuptools-65.5.1-2.fc38.noarch python3-six-1.16.0-9.fc38.noarch python3-tkinter-3.11.1-4.fc38.x86_64 python3-wheel-1:0.38.4-2.fc38.noarch rhash-1.4.3-2.fc38.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 vim-filesystem-2:9.0.1293-1.fc39.noarch xkbcomp-1.4.6-5.fc38.x86_64 xkeyboard-config-2.38-1.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xorg-x11-server-Xvfb-1.20.14-18.fc38.x86_64 xorg-x11-server-common-1.20.14-18.fc38.x86_64 xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-4.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-4.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HVZEg9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BPX8vH + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.0.1 -- The C compiler identification is GNU 13.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.11 (found version "3.11.1") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.3") -- [TEST] Found 15 test scripts -- Configuring done (2.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 55%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 58%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 66%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn creating build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.nOxLJI + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Built target nsv /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py running build_ext /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-4.fc39 --unique-debug-suffix -2.67.3-4.fc39.x86_64 --unique-debug-src-base smoldyn-2.67.3-4.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/bin/smoldyn original debug info size: 5012kB, size after compression: 4604kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3516 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6UZDyq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:422 Here: 422 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:707 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:434 Here: 434 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:3034 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:3039 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:3059 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:707 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:402 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_actions /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_api /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_connect_func /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_connect_var /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_getters /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_sanity /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:978 Updating test list for fixtures /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:1201 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestMultiProcessHandler.cxx:1412 Checking test dependency graph... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestMultiProcessHandler.cxx:1441 Checking test dependency graph end /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 2 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:518 Start 2: test_api /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:777 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:949 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:952 Testing test_api ... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.19 sec /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 3 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:518 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:777 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 3: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:949 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:952 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.22 sec /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 14 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:518 Start 14: test_sanity /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:777 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 14: test_newcursim /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 14: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 14: Testing test_get_err /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:42 14: (, '') /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:949 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:952 Testing test_sanity ... /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.17 sec /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/cmCTest.cxx:307 Current_Time: Feb 10 17:45 UTC /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:441 The following tests passed: /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:446 test_api /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:446 test_biosimulators /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:446 test_sanity /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:607 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.26.0-rc2/Source/CTest/cmCTestTestHandler.cxx:623 Total Test time (real) = 0.58 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-4.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.3q6v58 + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + cp -pr Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + cp -pr README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-4.fc39 smoldyn(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-4.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pgVHt7 + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr docs/BioNetGen docs/CMakeLists.txt docs/Doxyfile.in docs/README.md docs/SmolCrowd docs/SmolEmulate docs/Smoldyn docs/_static docs/build_doxygen docs/conf.py docs/doxygen docs/examples docs/index.rst docs/libSteve docs/python docs/requirements.txt docs/tikz docs/user docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-4.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GVoCzC + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-4.fc39 smoldyn-libs(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-4.fc39.x86_64 Provides: smoldyn-libs-devel = 2.67.3-4.fc39 smoldyn-libs-devel(x86-64) = 2.67.3-4.fc39 smoldyn-libs-static = 0:2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-4.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.hl81Su + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-4.fc39 python3-smoldyn = 2.67.3-4.fc39 python3-smoldyn(x86-64) = 2.67.3-4.fc39 python3.11-smoldyn = 2.67.3-4.fc39 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-4.fc39 Processing files: smoldyn-debugsource-2.67.3-4.fc39.x86_64 Provides: smoldyn-debugsource = 2.67.3-4.fc39 smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-4.fc39.x86_64 Provides: debuginfo(build-id) = 8f0cebcf7c46998d709f922d517c900cb547de8f smoldyn-debuginfo = 2.67.3-4.fc39 smoldyn-debuginfo(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-4.fc39.x86_64 Provides: debuginfo(build-id) = 262816a1403ea829b110ea2f8ad09820fac0977f libsmoldyn_shared.so.2.67.3-2.67.3-4.fc39.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-4.fc39 smoldyn-libs-debuginfo(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-4.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.wX1EOg + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.G5rKnz + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.67.3-4.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-4.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1676050893.978023/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm) Config(child) 2 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool